|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-982 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 992.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 390 KISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKeelsskdaqgeelkkraaglqseig 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLK------------------------- 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 470 qvkQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:pfam10174 296 ---QELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLT 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 550 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 629
Cdd:pfam10174 373 EEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERII 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 630 ERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEE 709
Cdd:pfam10174 453 ERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEE 532
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 710 CLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE----RQ 785
Cdd:pfam10174 533 CSKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQ 612
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 786 VKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQlqdslrkkddrieeleealresvqitaeremvlaqees 865
Cdd:pfam10174 613 MKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQ-------------------------------------- 654
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 866 artnaeKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALL 945
Cdd:pfam10174 655 ------LQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALL 728
|
810 820 830
....*....|....*....|....*....|....*...
gi 2035341070 946 ELSSS-KKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 982
Cdd:pfam10174 729 ELSSSkKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-968 |
1.62e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 101.17 E-value: 1.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVyrshskfMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 478 KDTELLALQTKLETLTNQfsdskqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAG 557
Cdd:COG1196 307 LEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 558 EIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRD 637
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 638 RDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKdsrlktlEIALEQKKEECLKMESQL 717
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAL-------LLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 718 KKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDqnkkVANLK 797
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL----VASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 798 HKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL 877
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 878 LMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEE 957
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570
....*....|.
gi 2035341070 958 VAALKREKDRL 968
Cdd:COG1196 769 LERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
261-982 |
2.69e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.43 E-value: 2.69e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 261 ELTEENFQRL---HAEHERQAKELFLLRKTLEEMelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLA 337
Cdd:TIGR02168 182 ERTRENLDRLediLNELERQLKSLERQAEKAERY---KELKAELRELELALLVLRLEELREELEELQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 338 EAEMHVhhLESLLEQKEKENNMLREEMHrrfenapdsaktkALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTE 417
Cdd:TIGR02168 259 TAELQE--LEEKLEELRLEVSELEEEIE-------------ELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 418 EREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFS 497
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 498 DSKQHIEVLKESLT-----AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERK 572
Cdd:TIGR02168 404 RLEARLERLEDRRErlqqeIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 573 VNVLQKKIENLQEQLRDKEKQMSSLKERVKSlQADTTNTDTALTTLEEALADKERTIE-----RLKEQRDRDEREKQEEI 647
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSELISVDEGYEAAIEaalggRLQAVVVENLNAAKKAI 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 648 DTYKKDLKDLKEKVSLLQGDLSEKEASLLDLK---EHASSLASSGLKKDSRLK--------------TLEIALEQKKEEC 710
Cdd:TIGR02168 563 AFLKQNELGRVTFLPLDSIKGTEIQGNDREILkniEGFLGVAKDLVKFDPKLRkalsyllggvlvvdDLDNALELAKKLR 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 711 LKM-----ESQLKKAHEATLEARASPEMSD-----RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:TIGR02168 643 PGYrivtlDGDLVRPGGVITGGSAKTNSSIlerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 781 ELERQVKDQNKKVANLKHKEqvekkksaqmlEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL 860
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEV-----------EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 861 AQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDA 940
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 2035341070 941 NIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 982
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
439-968 |
1.12e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.39 E-value: 1.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 439 KVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAA 518
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 519 ILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLK 598
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 599 ERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDL 678
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 679 KEHASSLASSGLKKDSRLKTLEIALEQkkeecLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEV 758
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 759 DRLLEILKEVENEKNDKDkkIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDssqqLQDSLRKKDDR 838
Cdd:COG1196 541 EAALAAALQNIVVEDDEV--AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL----VASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 839 IEELEEALRESVQITAEREMvlAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRK 918
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEA--ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2035341070 919 HLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL 968
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
323-969 |
8.03e-19 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 92.82 E-value: 8.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 323 AKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENN------MLREEMhRRFENAPDSAKTKALQTVIEMKDSKISSMER 396
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqALLKEK-REYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 397 GLRDLEEEIQML-KSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSS-------KDAQGEELKKRAAGLQSEI 468
Cdd:TIGR02169 252 ELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASlersiaeKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 469 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDM 548
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 549 AEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT 628
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 629 IERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQ--GDLSEKEASLLD------------------------LKEH- 681
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAqlGSVGERYATAIEvaagnrlnnvvveddavakeaielLKRRk 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 682 -------------ASSLASSGLKKDS------------------------------------------RLKTLEIALEQK 706
Cdd:TIGR02169 572 agratflplnkmrDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgkyRMVTLEGELFEK 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 707 KEECLKMESQLKKAHEATLEARAS-PEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQ 785
Cdd:TIGR02169 652 SGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 786 VKDQNKKVANLKHK---------------EQVEKKKSAQMLEEARRR------EDSLSDSS-QQLQDSLRKKDDRIEELE 843
Cdd:TIGR02169 732 EEKLKERLEELEEDlssleqeienvkselKELEARIEELEEDLHKLEealndlEARLSHSRiPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 844 EALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK-------ETHLTNLRAER 916
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdlESRLGDLKKER 891
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 2035341070 917 RKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLV 969
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-991 |
5.24e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.12 E-value: 5.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLES-LLEQKEKENNM 359
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKeLYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 360 LREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKsngalsteereeemkqmevyrshskfmkNK 439
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK----------------------------EE 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 440 VEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAI 519
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKL 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 520 LQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKE 599
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKA 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 600 RVKSlQADTTNTDTALTTLEEALADKERTIE-----RLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEAS 674
Cdd:TIGR02168 511 LLKN-QSGLSGILGVLSELISVDEGYEAAIEaalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGN 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 675 LLDLK---EHASSLASSGLKKDSRLK--------------TLEIALEQKKEECLKM-----ESQLKKAHEATLEARASPE 732
Cdd:TIGR02168 590 DREILkniEGFLGVAKDLVKFDPKLRkalsyllggvlvvdDLDNALELAKKLRPGYrivtlDGDLVRPGGVITGGSAKTN 669
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 733 MSD-----RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQvekkks 807
Cdd:TIGR02168 670 SSIlerrrEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE------ 743
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 808 aqmleearrredslsdssqQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQE 887
Cdd:TIGR02168 744 -------------------QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 888 LESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDR 967
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
810 820
....*....|....*....|....
gi 2035341070 968 LVQQLKQQTQNRMKLMADNYEDDH 991
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELES 908
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-1083 |
4.61e-16 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 84.04 E-value: 4.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 351 EQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEE--REEEMKQMEV 428
Cdd:PTZ00121 1113 EARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAarKAEEVRKAEE 1192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 429 YRSHSKFMKNKVEQLKEELSSKDA--QGEELKKRAAGLQSEIGQVKQELSRKDTEllalQTKLETLTNQFSDSKQHIEVL 506
Cdd:PTZ00121 1193 LRKAEDARKAEAARKAEEERKAEEarKAEDAKKAEAVKKAEEAKKDAEEAKKAEE----ERNNEEIRKFEEARMAHFARR 1268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 507 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIHDLKDMLDVKERKVNVLQKKIEnlqEQ 586
Cdd:PTZ00121 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK----KADEAKKKAEEAKKKADAAKKKAE---EA 1341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 587 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDtykkdlkdlkekvsllqg 666
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED------------------ 1403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 667 dlsEKEASLLDLKEHASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEAtleaRASPEMSDRIQQleremAR 746
Cdd:PTZ00121 1404 ---KKKADELKKAAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEA----KKAEEAKKKAEE-----AK 1470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 747 YKDESSKAQTEVDRLLEILKEVEnekndKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQ 826
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAE-----EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 827 QLQDSLRK-----KDDRIEELEEALRESvqitAEREMVLAQEESARTNAEKQVEELLM---------AMEKVKQELESMK 892
Cdd:PTZ00121 1546 KKADELKKaeelkKAEEKKKAEEAKKAE----EDKNMALRKAEEAKKAEEARIEEVMKlyeeekkmkAEEAKKAEEAKIK 1621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 893 AKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQE-----ALLAAISEKDANIA-LLELSSSKKKTQEEVAALKREKD 966
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEnkikaAEEAKKAEEDKKKAeEAKKAEEDEKKAAEALKKEAEEA 1701
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 967 RLVQQLKQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNRSKlklYIGHLTALCHDRDPLILRGLT 1046
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK---KIAHLKKEEEKKAEEIRKEKE 1778
|
730 740 750
....*....|....*....|....*....|....*..
gi 2035341070 1047 PPASYNADGEQAAWENELQKMTQEQLQNELEKVEGDN 1083
Cdd:PTZ00121 1779 AVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGK 1815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
711-985 |
9.04e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 9.04e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 711 LKMESQLKKAHEATLEARaspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN 790
Cdd:COG1196 218 LKEELKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 791 KKVANLKHKEQVEKkksaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNA 870
Cdd:COG1196 295 AELARLEQDIARLE----ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 871 EKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS 950
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270
....*....|....*....|....*....|....*
gi 2035341070 951 KKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMAD 985
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
434-927 |
3.75e-15 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 80.49 E-value: 3.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 434 KFMKNKVEQLKEELSSKdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLtnqfSDSKQHIEVLKESLTAK 513
Cdd:PRK03918 172 KEIKRRIERLEKFIKRT----ENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 514 EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE---------EKGTQAGEIHDLKDMLDVKERKVNV----LQKKI 580
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDELREIEKrlsrLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 581 ENLQEQLRD---KEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKER-----------TIERLKEQRDRDEREKQEe 646
Cdd:PRK03918 324 NGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEElerlkkrltglTPEKLEKELEELEKAKEE- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 647 idtYKKDLKDLKEKVSLLQGDLSEKEASLLDLK---------------EHASSLASSGLKKDSRLKTLEIALEQKKEECL 711
Cdd:PRK03918 403 ---IEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 712 KMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTE------------------VDRLLEILKEVENEKN 773
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 774 DKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQIT 853
Cdd:PRK03918 560 ELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETE 639
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 854 AEREMVLAQ-EESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK 927
Cdd:PRK03918 640 KRLEELRKElEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-843 |
9.39e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 9.39e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 230 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLESLLEQKEKENNMLREEmhrrfenapdsaktkalqtvIEMKDS 389
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRE------LEERLEELEEELAELEEE--------------------LEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 390 KISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEvyrshskfmknkveQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA--------------EAEEELEELAEELLEALRAAAELAAQLE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 470 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 550 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 629
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 630 ERLKEQRD------RDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 703
Cdd:COG1196 564 EYLKAAKAgratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLA 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 704 EQKKEECLKMESQLKKAHEATLEARASpemSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRREL---LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEE 720
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 784 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELE 843
Cdd:COG1196 721 LEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
465-842 |
2.95e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 2.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 465 QSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 545 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 624
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 625 KERTIERLKEQRdrdeREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE 704
Cdd:TIGR02168 836 TERRLEDLEEQI----EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 705 QKKEECLKMESQLKKAHEATLEARAspemsDRIQQLEREMARYKDEsskaqtevdrlleiLKEVENEKNDKDKKIAELER 784
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEV-----RIDNLQERLSEEYSLT--------------LEEAEALENKIEDDEEEARR 972
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2035341070 785 QVKDQNKKVA-----NLKHKEQVEKKKsaQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEEL 842
Cdd:TIGR02168 973 RLKRLENKIKelgpvNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
273-974 |
5.37e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 5.37e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK-IKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 353 KEKENNMLREEMhrrfenAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSH 432
Cdd:TIGR02169 313 KERELEDAEERL------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 433 SKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA 512
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 513 KEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA-----------GEIHDLKDMLDVKERKV-------- 573
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRaveevlkasiqGVHGTVAQLGSVGERYAtaievaag 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 574 -----------NVLQKKIENLQE------------QLRDKEKQMSSLKE------------------------------- 599
Cdd:TIGR02169 547 nrlnnvvveddAVAKEAIELLKRrkagratflplnKMRDERRDLSILSEdgvigfavdlvefdpkyepafkyvfgdtlvv 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 600 ----------------------------------RVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDER---E 642
Cdd:TIGR02169 627 edieaarrlmgkyrmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENrldE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 643 KQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLkkahe 722
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL----- 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 723 ATLEARASPEmsdRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQV 802
Cdd:TIGR02169 782 NDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 803 EKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnAEKQVEELLMAME 882
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-----------KRKRLSELKAKLE 927
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 883 KVKQELESMKAKLSSTQQSLAEkETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALK 962
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
810
....*....|..
gi 2035341070 963 REKDRLVQQLKQ 974
Cdd:TIGR02169 1007 ERIEEYEKKKRE 1018
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
389-966 |
1.18e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 75.44 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 389 SKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEI 468
Cdd:TIGR04523 96 DKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 469 GQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE---VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQI 545
Cdd:TIGR04523 176 NLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 546 QDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQ-----MSSLKERVKSLQADTTNTDTALTTLEE 620
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKSELKNQEKKLEEIQNQISQNNK 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 621 ALADKERTIERLKEQRDRDEREKQEeidtykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE 700
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSE------------------KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 701 IALEQKKEECLKMESQLKKAHEATlearaspemsdriQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEK-------------ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 781 ELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQI-----TAE 855
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKeskisDLE 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 856 REMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 935
Cdd:TIGR04523 545 DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
570 580 590
....*....|....*....|....*....|.
gi 2035341070 936 SEKDANIALLELSSSKKKTQEEVAALKREKD 966
Cdd:TIGR04523 625 ENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
452-849 |
1.54e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.49 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 452 AQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 531
Cdd:TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 532 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 611
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 612 DTALTTLEEALADKERTIERLKEQRDrDEREKQEEIDTYKKDlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLK 691
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIK-SIEKEIENLNGKKEE----------LEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 692 KDSRLKTLEIALEQkkeecLKMESQLKKAHEATLEARASpEMSDRIQQLEREMARYKDESSKaqtevdrlLEILKEVENE 771
Cdd:TIGR02169 894 LEAQLRELERKIEE-----LEAQIEKKRKRLSELKAKLE-ALEEELSEIEDPKGEDEEIPEE--------ELSLEDVQAE 959
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 772 KNDKDKKIAELERqvkdqnkkvANLKHKEQvekkksaqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRES 849
Cdd:TIGR02169 960 LQRVEEEIRALEP---------VNMLAIQE---------YEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
380-638 |
2.57e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 380 LQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKK 459
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 460 RAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 539
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 540 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLE 619
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
250
....*....|....*....
gi 2035341070 620 EALADKERTIERLKEQRDR 638
Cdd:TIGR02168 922 EKLAQLELRLEGLEVRIDN 940
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
691-975 |
5.25e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 5.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 691 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASpEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVEN 770
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA-ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 771 EKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRkkddRIEELEEALRESV 850
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE----ALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 851 QITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA 930
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 2035341070 931 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 975
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
382-895 |
1.46e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.98 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 382 TVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRA 461
Cdd:TIGR04523 204 SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 462 AGLQSEIGQVKQELS------------RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRL 529
Cdd:TIGR04523 284 KELEKQLNQLKSEISdlnnqkeqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQR 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 530 RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTT 609
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 610 NTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEK---EASLLDLKEHASSLA 686
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVKDLTKKISSLK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 687 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKaheATLEARASpEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILK 766
Cdd:TIGR04523 524 EKIEKLESEKKEKESKISDLEDELNKDDFELKK---ENLEKEID-EKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 767 EVENEKNDKDKKIAELERQVKDQNKK-------VANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRI 839
Cdd:TIGR04523 600 DLIKEIEEKEKKISSLEKELEKAKKEneklssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDII 679
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 840 EELEEALRESVQITAER--EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 895
Cdd:TIGR04523 680 ELMKDWLKELSLHYKKYitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
398-925 |
4.61e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 70.45 E-value: 4.61e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 398 LRDLEEEIQMLKSNG------ALSTEERE--EEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:PRK02224 189 LDQLKAQIEEKEEKDlherlnGLESELAEldEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 470 QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 549
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 550 EEkgtqageIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQAD----TTNTDTALTTLEEALADK 625
Cdd:PRK02224 349 ED-------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdaPVDLGNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 626 ERTIERLKEQR------DRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTL 699
Cdd:PRK02224 422 DELREREAELEatlrtaRERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 700 EIALE-----QKKEECLKMESQLKKAHEATLEAR--ASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:PRK02224 502 EDLVEaedriERLEERREDLEELIAERRETIEEKreRAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 773 NDKDKKIAELERqVKDQNKKVANLkhkeqvekkksAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESvqi 852
Cdd:PRK02224 582 AELKERIESLER-IRTLLAAIADA-----------EDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA--- 646
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2035341070 853 taeremVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEkethLTNLRaERRKHLEEVLE 925
Cdd:PRK02224 647 ------RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE----LEELR-ERREALENRVE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-895 |
6.13e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 6.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 153 DLQTQLKEVlrENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEAsKITIWKEQYRVVQEENQHMQMTIQAL 232
Cdd:TIGR02168 217 ELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE-KLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 233 QDEL-RIQRDLNQLFQQDSSSRTGEPCVAELTEENFQR---LHAEHERQAKELFLLRKTLEEMELRIET---QKQTLNAR 305
Cdd:TIGR02168 294 ANEIsRLEQQKQILRERLANLERQLEELEAQLEELESKldeLAEELAELEEKLEELKEELESLEAELEEleaELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 306 DESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAemHVHHLESLLEQKEKENNMLREEMHRrfenapdsAKTKALQTVIE 385
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEA--RLERLEDRRERLQQEIEELLKKLEE--------AELKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 386 MKDSKISSMERGLRDLEEEIQMLKSngalSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQ 465
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELRE----ELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 466 SEIGQVKQELSRKDTELLALQTKLET-----LTNQFSDSKQHIEVLKES-----------------LTAKEQRAAILQTE 523
Cdd:TIGR02168 520 GILGVLSELISVDEGYEAAIEAALGGrlqavVVENLNAAKKAIAFLKQNelgrvtflpldsikgteIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 524 VDALRLRLEEKETMLNK-------------KTKQIQDMAEEKG------TQAGEI----------HDLKDMLDVK----- 569
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKalsyllggvlvvdDLDNALELAKKLRpgyrivTLDGDLvrpggvitggSAKTNSSILErrrei 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 570 ---ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDERE---K 643
Cdd:TIGR02168 680 eelEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElteL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 644 QEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLK-KAHE 722
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAaTERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 723 ATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHkeqv 802
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR---- 915
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 803 EKKKSAQMLEEARRREDSLsdssqqlqdslrkkDDRIEELEEALRESVQITAEremvlaqeesartNAEKQVEELLMAME 882
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGL--------------EVRIDNLQERLSEEYSLTLE-------------EAEALENKIEDDEE 968
|
810
....*....|...
gi 2035341070 883 KVKQELESMKAKL 895
Cdd:TIGR02168 969 EARRRLKRLENKI 981
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
488-1028 |
1.22e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.30 E-value: 1.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 488 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 565
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 566 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALttlEEALADKERT---IERLKEQRDRD 639
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGLDdadAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 640 EREKQEeidtykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKK 719
Cdd:PRK02224 320 EDRDEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 720 AHEATLEARaspemsDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAnlkhk 799
Cdd:PRK02224 375 AREAVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE----- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 800 eqvekkKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARtNAEKQVEELLM 879
Cdd:PRK02224 444 ------EAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEE 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 880 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK------ 953
Cdd:PRK02224 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESlerirt 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 954 TQEEVAALKREKDRLVQQLKQQ----TQNRMKL---------MADNYEDDHFRSSRSNQTNHKPSPDQIIQPLLELDQNR 1020
Cdd:PRK02224 597 LLAAIADAEDEIERLREKREALaelnDERRERLaekrerkreLEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREER 676
|
....*...
gi 2035341070 1021 SKLKLYIG 1028
Cdd:PRK02224 677 DDLQAEIG 684
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
261-904 |
1.70e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.55 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 261 ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsakaTEEDHERTRRLAEAE 340
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL------REELEKLEKEVKELE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 341 MHVHHLESLLEQKEKENNMLREEmhrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALST--EE 418
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKL----------EEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEfyEE 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 419 REEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKqELSRKDTELLALQTKLETLTNQFSD 498
Cdd:PRK03918 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 499 skQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmlDVKERKVNVLQK 578
Cdd:PRK03918 384 --LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHRKELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 579 KIENLQEQLRDKEKQMSSLKERVKSLQadttntdtALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLK 658
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELE--------KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 659 EKVSLLQGDLSEKEASLLDLKEhasslassgLKKdsRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRIQ 738
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLEE---------LKK--KLAELEKKLDELEEELAELLKELEELGFESVE-----ELEERLK 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 739 QLEREMARYKdESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVanlkhkEQVEKKKSAQMLEEARRRE 818
Cdd:PRK03918 596 ELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL------EELEKKYSEEEYEELREEY 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 819 DSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitaeremvLAQEESARTNAEKQVEELLMAMEKVKQELESMKA-KLSS 897
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEK-----------LKEELEEREKAKKELEKLEKALERVEELREKVKKyKALL 737
|
....*..
gi 2035341070 898 TQQSLAE 904
Cdd:PRK03918 738 KERALSK 744
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
212-797 |
3.38e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.84 E-value: 3.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 212 KEQYRVVQEENQH-MQMTIQALQDELRI-----QRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLR 285
Cdd:pfam15921 244 EDQLEALKSESQNkIELLLQQHQDRIEQlisehEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 286 KTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDhERTRRLAEAEMHVHHLESLLEQKEKENNMLREEMH 365
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSE-LTEARTERD-QFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 366 RRFE-NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLK 444
Cdd:pfam15921 402 RLWDrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 445 EELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKEsltakeqraaiLQTEV 524
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN-----------VQTEC 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 525 DALRLRLEEKETMLNKKTKQIQDMAE---EKGTQAGEIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQL---EKEINDRRLELQEFKILKDKKDAKIRELEARV 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 602 KSLQADTTNTDtalttleEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEH 681
Cdd:pfam15921 628 SDLELEKVKLV-------NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQ 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 682 ASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkAHEATLEAraspeMSDRIQQLEREMARYKDESSKAQTEVDRL 761
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQIT-AKRGQIDA-----LQSKIQFLEEAMTNANKEKHFLKEEKNKL 774
|
570 580 590
....*....|....*....|....*....|....*.
gi 2035341070 762 LEILKEVENEKNDKDKKIAELERQVKDQNKKVANLK 797
Cdd:pfam15921 775 SQELSTVATEKNKMAGELEVLRSQERRLKEKVANME 810
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
396-981 |
8.30e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.70 E-value: 8.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 396 RGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRshskfmknKVEQLKEELSSKdaqGEELKKRAAGLQSEIGQVKQEL 475
Cdd:PTZ00121 1070 EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAK--------KTETGKAEEARK---AEEAKKKAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 476 SRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV-DALRLRLEEKETMLNKKTKQIQDMAEEKGT 554
Cdd:PTZ00121 1139 ARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 555 QAGEIHDLKDMLDVKERKVNVLQ----KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAlaDKERTIE 630
Cdd:PTZ00121 1219 KAEDAKKAEAVKKAEEAKKDAEEakkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK--KKADEAK 1296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 631 RLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEEC 710
Cdd:PTZ00121 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 711 LKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN 790
Cdd:PTZ00121 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 791 KKVANLKHKEQvEKKKSAQMLEEArrREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAqEESARTNA 870
Cdd:PTZ00121 1457 KKAEEAKKKAE-EAKKADEAKKKA--EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA-DEAKKAEE 1532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 871 EKQVEELLMAMEKVK-------QELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvlEMKQEALLAAISEKDANIA 943
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKadelkkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAE 1610
|
570 580 590
....*....|....*....|....*....|....*...
gi 2035341070 944 LLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMK 981
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
150-898 |
1.50e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.52 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 150 TIMDLQTQLKEVLRENDLLrKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTI 229
Cdd:pfam15921 111 SVIDLQTKLQEMQMERDAM-ADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 230 QALQDELRiQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLE--------EMELRIETQK-- 299
Cdd:pfam15921 190 RSILVDFE-EASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQdr 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 300 --QTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAE--MHVHHLESLLEQKEKENNMLREEmHRRFENAPDSA 375
Cdd:pfam15921 269 ieQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsMYMRQLSDLESTVSQLRSELREA-KRMYEDKIEEL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 376 KTKALQTVIEMKDSKIS----SMERGlrDLEEEIQMLKSNgaLSTEEREEEMKQMEVYRSHSKFMKNK--VEQLKEELSS 449
Cdd:pfam15921 348 EKQLVLANSELTEARTErdqfSQESG--NLDDQLQKLLAD--LHKREKELSLEKEQNKRLWDRDTGNSitIDHLRRELDD 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 450 KDAQGEELKKRAAGLQSEI-GQVKQELSRKDTELLALQtKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALR 528
Cdd:pfam15921 424 RNMEVQRLEALLKAMKSECqGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLT 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 529 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmldvKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ--A 606
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN----EGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTqlV 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 607 DTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEeidtykkdlkdlkekvsllqGDLSEKEASLLDLKEHASSLA 686
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKD--------------------AKIRELEARVSDLELEKVKLV 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 687 SSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASpeMSDRIQQLEREMARYKDESSKAQTEVDRLLEILK 766
Cdd:pfam15921 639 NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRN--FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 767 EVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELeEAL 846
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGEL-EVL 795
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 2035341070 847 RESVQITAERemvLAQEESARTNAEKQVEELLMAMEkvKQELESMKAKLSST 898
Cdd:pfam15921 796 RSQERRLKEK---VANMEVALDKASLQFAECQDIIQ--RQEQESVRLKLQHT 842
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
437-968 |
1.93e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.06 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 437 KNKVEQLKEELSSKDAQgeELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLtnqfsdskqhievlKESLTAKEQR 516
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEK--DLHERLNGLESELAELDEEIERYEEQREQARETRDEA--------------DEVLEEHEER 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 517 AAILQT---EVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVK-------ERKVNVLQKKIENLQEQ 586
Cdd:PRK02224 250 REELETleaEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDdadaeavEARREELEDRDEELRDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 587 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRdRDEREKQEEIDTYKKDLKDLKEKVSLLQG 666
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV-EDRREEIEELEEEIEELRERFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 667 DLSEKEASLLDLKEHASslassglkkdSRLKTLEIALEQKKEECLKMESQLK--KAHEATLEARASP------EMSDRIQ 738
Cdd:PRK02224 409 NAEDFLEELREERDELR----------EREAELEATLRTARERVEEAEALLEagKCPECGQPVEGSPhvetieEDRERVE 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 739 QLEREMARYKDESSKAQTEVDRlLEILKEVENEKNDKDKKIAELERQVKDQnkkvanlkhkeqvekkksAQMLEEARRRE 818
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLER-AEDLVEAEDRIERLEERREDLEELIAER------------------RETIEEKRERA 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 819 DSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKqVEELLMAMEKVKQELESMKAKLSST 898
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREAL 618
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 899 QQSLAEKETHLTNLRaERRKHLEEvlEMKQEALLAAISEKD------ANIA--LLELSSSKKKTQEEVAALKREKDRL 968
Cdd:PRK02224 619 AELNDERRERLAEKR-ERKRELEA--EFDEARIEEAREDKEraeeylEQVEekLDELREERDDLQAEIGAVENELEEL 693
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
197-938 |
3.09e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.60 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 197 ERALRKDEASKITIWKEQYRVVQ----EENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAElTEENFQRLHA 272
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQE-EQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 353 KEKENNMLREEMHRRFENApdsaKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSH 432
Cdd:TIGR00618 344 RRLLQTLHSQEIHIRDAHE----VATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAF 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 433 SkfmknkveQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTA 512
Cdd:TIGR00618 420 R--------DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 513 KEQRAailqtevdalrLRLEEKETMLNKKTKQIqdmaEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEK 592
Cdd:TIGR00618 492 VLARL-----------LELQEEPCPLCGSCIHP----NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 593 QMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKqeeidtykkDLKDLKEKVSLLQGdlsEKE 672
Cdd:TIGR00618 557 QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE---------DMLACEQHALLRKL---QPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 673 ASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESS 752
Cdd:TIGR00618 625 QDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQT 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 753 KAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSL 832
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLA 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 833 RKKDDRIEELEEALRESVQITAEremvlaqeesARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNL 912
Cdd:TIGR00618 785 AEIQFFNRLREEDTHLLKTLEAE----------IGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY 854
|
730 740
....*....|....*....|....*.
gi 2035341070 913 rAERRKHLEEVleMKQEALLAAISEK 938
Cdd:TIGR00618 855 -EECSKQLAQL--TQEQAKIIQLSDK 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
455-645 |
3.71e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.24 E-value: 3.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 455 EELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK 534
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 535 ETMLNKKTKQIQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 610
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190
....*....|....*....|....*....|....*
gi 2035341070 611 TDTALTTLEEALADKERTIERLKEQRDRDEREKQE 645
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-597 |
4.26e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 277 QAKELFLLRKTLEEMELRIETQKQTLNArdesIKKLLEMLQSKGLSAKATEEDHERTRRLAEaemhvhhlESLLEQKEKE 356
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAE----LRKELEELEEELEQLRKELEELSRQISALR--------KDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 357 NNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQmlKSNGALSTEEREEEMKQMEVYRSHSKF- 435
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE--QLKEELKALREALDELRAELTLLNEEAa 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 436 -MKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKE 514
Cdd:TIGR02168 821 nLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 515 QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL-KDMLDVKERKVNVLQKKIENLQEQLRDKEKQ 593
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
....
gi 2035341070 594 MSSL 597
Cdd:TIGR02168 981 IKEL 984
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
734-974 |
1.80e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.93 E-value: 1.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 734 SDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKvanlkhkeqvekkksaqmLEE 813
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE------------------LAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 814 ARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAErEMVLAQEESArtnaekQVEELLMAMEKVKQELESMKA 893
Cdd:COG4942 81 LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPL-ALLLSPEDFL------DAVRRLQYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 894 KLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIAllELSSSKKKTQEEVAALKREKDRLVQQLK 973
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAE-LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQQEAEELEALIA 230
|
.
gi 2035341070 974 Q 974
Cdd:COG4942 231 R 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
193-789 |
3.58e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 3.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQDSSSRTGepcvAELTEENFQRLH 271
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYeLLAELARLEQDIARLEER----RRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEED-HERTRRLAEAEMHVHHLESLL 350
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEElEELAEELLEALRAAAELAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 351 EQKEK--ENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEmkqmev 428
Cdd:COG1196 403 EELEEaeEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE------ 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 429 yrshskfmkNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLAlqtklETLTNQFSDSKQHIEVLKE 508
Cdd:COG1196 477 ---------AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-----GAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 509 SLTAKEQRaAILQTEVDALRLRLEEKETMLNKKT-----KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 583
Cdd:COG1196 543 ALAAALQN-IVVEDDEVAAAAIEYLKAAKAGRATflpldKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 584 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDtykkDLKDLKEKVSL 663
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE----RLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 664 LQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLERE 743
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE--ELERELERLERE 775
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 2035341070 744 MARY-------KDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQ 789
Cdd:COG1196 776 IEALgpvnllaIEEYEELEERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
392-974 |
4.40e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.90 E-value: 4.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 392 SSMERGLRDLEEEIQMLKS-----NGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQS 466
Cdd:pfam15921 220 SAISKILRELDTEISYLKGrifpvEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQS 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 467 EIGQVKQELSRKDTELLALQTKLETLTNQFSDSkqhievLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ 546
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESG 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 547 DMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK-------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTle 619
Cdd:pfam15921 374 NLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMA-- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 620 eALADKERTIERLKEQRDRDEREKQ------EEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASS---GL 690
Cdd:pfam15921 452 -AIQGKNESLEKVSSLTAQLESTKEmlrkvvEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 691 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPE-MSDRIQQLEREMARYKDESSKAQTEV-DRLLEiLKEV 768
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEF 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 769 ENEKNDKDKKIAELERQVKD---QNKKVANLKHKE----QVEKKKSAQMLEE---ARRREDSLSDSSQQLQDSLRKKDDR 838
Cdd:pfam15921 610 KILKDKKDAKIRELEARVSDlelEKVKLVNAGSERlravKDIKQERDQLLNEvktSRNELNSLSEDYEVLKRNFRNKSEE 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 839 IEELEEALRESVQiTAEREmvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRK 918
Cdd:pfam15921 690 METTTNKLKMQLK-SAQSE--LEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHF 766
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 2035341070 919 HLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 974
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
527-973 |
6.16e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.46 E-value: 6.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 527 LRLRLEEKETMLnKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQA 606
Cdd:PRK03918 174 IKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 607 DTTNTDTALTTLEEALADKERTIERLKEQRDRDErEKQEEIDTYKKDLKDLKEKVSLLQgDLSEKEASLLDLKEHASSLA 686
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 687 SSGLKKDSRLKTLEialeQKKEECLKMESQLKKAHEATLEARAspeMSDRIQQLEREMARYKDEssKAQTEVDRLLEILK 766
Cdd:PRK03918 331 KELEEKEERLEELK----KKLKELEKRLEELEERHELYEEAKA---KKEELERLKKRLTGLTPE--KLEKELEELEKAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 767 EVENEKNDKDKKIAELERQVKDQNKKVANLKH--------KEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDR 838
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 839 IEELEEALRESVQITAEREMV----LAQEESARTNAEKqVEELLMAMEKVKQELESMKAKLSSTQQSLaEKETHLTNLRA 914
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAeqlkELEEKLKKYNLEE-LEKKAEEYEKLKEKLIKLKGEIKSLKKEL-EKLEELKKKLA 559
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2035341070 915 ERRKHLEEVLEMKQEAL-----LAAISEKDANIAL----------LELSSSKKKTQEEVAALKREKDRLVQQLK 973
Cdd:PRK03918 560 ELEKKLDELEEELAELLkeleeLGFESVEELEERLkelepfyneyLELKDAEKELEREEKELKKLEEELDKAFE 633
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-890 |
7.48e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 7.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 272 AEHERQAKELFL----LRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLE 347
Cdd:PTZ00121 1311 AEEAKKADEAKKkaeeAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA------AK 1384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 348 SLLEQKEKENNMLR--EEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQ 425
Cdd:PTZ00121 1385 KKAEEKKKADEAKKkaEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 426 MEVYRSHSKFMKNKVEQLKEELSSKDaQGEELKKRAAGLQSeigqvKQELSRKDTELLALQTKLETLTNQFSDSKQHIEV 505
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKK-KAEEAKKKADEAKK-----AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 506 LKEsltAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDlKDMLDVKERKVNVLQKKIENLQ- 584
Cdd:PTZ00121 1539 AKK---AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE-ARIEEVMKLYEEEKKMKAEEAKk 1614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 585 -EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSL 663
Cdd:PTZ00121 1615 aEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 664 LQGDLSEKEASLLDLKEhasslaSSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEatlEARASPEMSDRIQQLERE 743
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKE------AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE---EAKKDEEEKKKIAHLKKE 1765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 744 MARYKDESSKAQTEVDRlleilkevENEKNDKDKKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLSD 823
Cdd:PTZ00121 1766 EEKKAEEIRKEKEAVIE--------EELDEEDEKRRMEVDKKIKDIFDNFANI----IEGGKEGNLVINDSKEMEDSAIK 1833
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341070 824 SSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELES 890
Cdd:PTZ00121 1834 EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIER 1900
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
380-793 |
1.80e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 380 LQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKK 459
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 460 RAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 539
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 540 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQadttnTDTALTTLE 619
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD-----FELKKENLE 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 620 EALADKERTIERLKEQRD---RDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRL 696
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKslkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 697 KTLEIALEQKKEECLKMESqlkKAHEATLEARASPEMSDRIQQLereMARYKDESSK----------AQTEVDRLLEILK 766
Cdd:TIGR04523 641 NKLKQEVKQIKETIKEIRN---KWPEIIKKIKESKTKIDDIIEL---MKDWLKELSLhykkyitrmiRIKDLPKLEEKYK 714
|
410 420
....*....|....*....|....*..
gi 2035341070 767 EVENEKNDKDKKIAELERQVKDQNKKV 793
Cdd:TIGR04523 715 EIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
438-916 |
2.43e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.39 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 438 NKVEQLKEELSSKDAQ--GEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIEVLK 507
Cdd:COG4913 272 AELEYLRAALRLWFAQrrLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQEQL 587
Cdd:COG4913 352 RELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 588 RDKEKQMSSLKERVKS----LQADTTNTDTALTTLEEAL---------ADKERT----IERL-----------KEQRDR- 638
Cdd:COG4913 422 RELEAEIASLERRKSNiparLLALRDALAEALGLDEAELpfvgelievRPEEERwrgaIERVlggfaltllvpPEHYAAa 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 639 ----DEREKQEEIDTYK-KDLKDLKEKVSLLQGDLSEK------------EASLL------------DLKEHASSLASSG 689
Cdd:COG4913 502 lrwvNRLHLRGRLVYERvRTGLPDPERPRLDPDSLAGKldfkphpfrawlEAELGrrfdyvcvdspeELRRHPRAITRAG 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 690 LKKDS------------------------RLKTLEIALEQKKEECLKMESQLKKAHEatlEARASPEMSDRIQQLErEMA 745
Cdd:COG4913 582 QVKGNgtrhekddrrrirsryvlgfdnraKLAALEAELAELEEELAEAEERLEALEA---ELDALQERREALQRLA-EYS 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 746 RYKDESSKAQTEVDRLLEILKEVENEKNDkdkkIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSS 825
Cdd:COG4913 658 WDEIDVASAEREIAELEAELERLDASSDD----LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQ 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 826 QQLQD-SLRKKDDRIEELEEALRESVQITAEREMVLAQEES---ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQS 901
Cdd:COG4913 734 DRLEAaEDLARLELRALLEERFAAALGDAVERELRENLEERidaLRARLNRAEEELERAMRAFNREWPAETADLDADLES 813
|
570
....*....|....*
gi 2035341070 902 LAEKETHLTNLRAER 916
Cdd:COG4913 814 LPEYLALLDRLEEDG 828
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-758 |
3.85e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 3.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 388 DSKIssmERGLRDLEEEIQMLKSNGALSTEER------EEEMKQMEVYRS-HSKFMKNKVEQLKEELSSKDAQGEELKKR 460
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLIIDEKRqqlerlRREREKAERYQAlLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 461 AAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDskqhievlkesLTAKEQRAaiLQTEVDALRLRLEEKETMLNK 540
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD-----------LGEEEQLR--VKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 541 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE 620
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 621 ALADKERTIERLKEQRDRDEREKQEeidtykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE 700
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQR------------------LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 701 IALEQKKEECLKMESQLKKAhEATLEaraspEMSDRIQQLEREMARYKDESSKAQTEV 758
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDL-KEEYD-----RVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
265-984 |
4.98e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.29 E-value: 4.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 265 ENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKllEMLQSKGLSAKATEEDHERTRRLAEAEMHVH 344
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE--KKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 345 HLESLLEQKEKENNMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMK 424
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE 504
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 505 VLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQ-----------DMAEEKGTQAGEIHDLKDMLDVKERKV 573
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdgvggriISAHGRLGDLGVAVENYKVAISTAVIV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 574 NVLQKKIENLQEQ------------LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKE-QRDRDE 640
Cdd:pfam02463 552 EVSATADEVEERQklvraltelplgARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVvEGILKD 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 641 REKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKA 720
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 721 HEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKE 800
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 801 QVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLma 880
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL-- 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 881 MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 960
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
730 740
....*....|....*....|....
gi 2035341070 961 LKREKDRLVQQLKQQTQNRMKLMA 984
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEELG 973
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-821 |
1.56e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.54 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSR 477
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 478 KDT--ELLALQTKLETLTNQFSDSKQHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKGT 554
Cdd:COG4717 128 LPLyqELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 555 QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK--------SLQADTTNTDTALTTLEEALADKE 626
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 627 RTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQK 706
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 707 KEECLKMESQ--LKKAHEATLEA-RASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEIL--KEVENEKNDKDKKIAE 781
Cdd:COG4717 364 QLEELEQEIAalLAEAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEE 443
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2035341070 782 LERQVKDQNKKVANLKHkeQVEKKKSAQMLEEARRREDSL 821
Cdd:COG4717 444 LEEELEELREELAELEA--ELEQLEEDGELAELLQELEEL 481
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
735-960 |
3.07e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.07 E-value: 3.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 735 DRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEA 814
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 815 RRREDSLSD-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELE 889
Cdd:COG3883 96 YRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALKAELE 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341070 890 SMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 960
Cdd:COG3883 168 AAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
428-984 |
3.21e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 428 VYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLK 507
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 508 eslTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQageIHDLKDMLDVKERKVNVLQKKIenlqeqL 587
Cdd:pfam15921 159 ---CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK---IYEHDSMSTMHFRSLGSAISKI------L 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 588 RDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALadkertierLKEQRDRDEREkqeeidtykkdlkdlkekvsllqgd 667
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---------LQQHQDRIEQL------------------------- 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 668 LSEKEASLLDLKEHASSLASsglKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEAR-----ASPEMSDRIQQLER 742
Cdd:pfam15921 273 ISEHEVEITGLTEKASSARS---QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRselreAKRMYEDKIEELEK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 743 EMARYKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELERQVKDQNkkVANLKHKEQVEKKKSAQMLEEARRREdsLS 822
Cdd:pfam15921 350 QLVLANSELTEARTERDQFSQ---ESGNLDDQLQKLLADLHKREKELS--LEKEQNKRLWDRDTGNSITIDHLRRE--LD 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 823 DSSQQLQdslrkkddRIEELEEALRESVQITAEREM---------------VLAQEESARTNAEKQVEELL---MAMEKV 884
Cdd:pfam15921 423 DRNMEVQ--------RLEALLKAMKSECQGQMERQMaaiqgkneslekvssLTAQLESTKEMLRKVVEELTakkMTLESS 494
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 885 KQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAllaaisekdaniallelsSSKKKTQEEVAALK-- 962
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG------------------DHLRNVQTECEALKlq 556
|
570 580
....*....|....*....|...
gi 2035341070 963 -REKDRLVQQLKQQTQNRMKLMA 984
Cdd:pfam15921 557 mAEKDKVIEILRQQIENMTQLVG 579
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
390-999 |
4.70e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.28 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 390 KISSMERGLRDLEEEIQMLKSngalSTEEREEEMKQMEVYRShsKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKS----RKKQMEKDNSELELKME--KVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 470 ---QVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKE-----QRAAILQTEVD-ALRLRLEEKETMLNK 540
Cdd:TIGR00606 330 klnKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfERGPFSERQIKnFHTLVIERQEDEAKT 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 541 KTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL--------QADTTNTD 612
Cdd:TIGR00606 410 AAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIleldqelrKAERELSK 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 613 TALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQgDLSEKEASLLDLKEHASSLASSGLKK 692
Cdd:TIGR00606 490 AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTK-DKMDKDEQIRKIKSRHSDELTSLLGY 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 693 DSRLKTLEIALEQKKEECLKMESQLKKaheatlearaspeMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEK 772
Cdd:TIGR00606 569 FPNKKQLEDWLHSKSKEINQTRDRLAK-------------LNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 773 nDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEAR----------RREDSLSDSSQQLQDSLRKKDDRIEEL 842
Cdd:TIGR00606 636 -DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQsccpvcqrvfQTEAELQEFISDLQSKLRLAPDKLKST 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 843 EEALResvQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH--- 919
Cdd:TIGR00606 715 ESELK---KKEKRRDEMLGLAPGRQSIIDLKEKEI----PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvc 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 920 LEEVLEMKQ-EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFRSSRSN 998
Cdd:TIGR00606 788 LTDVTIMERfQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN 867
|
.
gi 2035341070 999 Q 999
Cdd:TIGR00606 868 E 868
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
414-945 |
4.85e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 4.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 414 LSTEEREEEMKQMEVYRSHSKfmkNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLT 493
Cdd:pfam05483 247 IQITEKENKMKDLTFLLEESR---DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIAT 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 494 NQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK------------------ETMLNKKTKQIQDMAEEKGTQ 555
Cdd:pfam05483 324 KTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELlrteqqrleknedqlkiiTMELQKKSSELEEMTKFKNNK 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 556 AGEIHDLKDMLDVKERKVNVlQKKIENLQEQLRDKEKQMSSLkervksLQADTTNTDTALTTLEEALADKERTIERLKEQ 635
Cdd:pfam05483 404 EVELEELKKILAEDEKLLDE-KKQFEKIAEELKGKEQELIFL------LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDL 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 636 RDRDEREKQEEIDTYKKDLKDLKEKVSLLQgdlsEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKkeecLKMES 715
Cdd:pfam05483 477 KTELEKEKLKNIELTAHCDKLLLENKELTQ----EASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKE----MNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 716 QLKKAHEATLEARasPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAN 795
Cdd:pfam05483 549 ELESVREEFIQKG--DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSA 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 796 LKHKEQVEKKKSAQM---LEEARRREDSLSDSSQ-QLQDSLRKKDDRIEELEEAlresvQITAEREMVLAQEESARtnAE 871
Cdd:pfam05483 627 ENKQLNAYEIKVNKLeleLASAKQKFEEIIDNYQkEIEDKKISEEKLLEEVEKA-----KAIADEAVKLQKEIDKR--CQ 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 872 KQVEELLMAMEKVKQ-----------ELESMKAKLSSTQQSLAEKETHLTNLRAERRKhLEEVLEMKQEALLAAISEKDA 940
Cdd:pfam05483 700 HKIAEMVALMEKHKHqydkiieerdsELGLYKNKEQEQSSAKAALEIELSNIKAELLS-LKKQLEIEKEEKEKLKMEAKE 778
|
....*
gi 2035341070 941 NIALL 945
Cdd:pfam05483 779 NTAIL 783
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
1068-1108 |
5.77e-07 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 46.95 E-value: 5.77e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2035341070 1068 TQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDILEQV 1108
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
389-602 |
5.97e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 389 SKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEI 468
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 469 GQVKQELSR--KDTELLALQTKLETLTNQ--FSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544
Cdd:COG4942 100 EAQKEELAEllRALYRLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 545 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
753-979 |
9.78e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 9.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 753 KAQTEVDRLLEILKEVEnekndkdKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSL 832
Cdd:COG1196 183 ATEENLERLEDILGELE-------RQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 833 RKKDDRIEELE---EALRESVQiTAEREMVLAQEEsaRTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHL 909
Cdd:COG1196 256 EELEAELAELEaelEELRLELE-ELELELEEAQAE--EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 910 TNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 979
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-892 |
9.88e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 9.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalsTEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE-----LEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 440 VEQLKEELSSKDAQ---GEELKKRAAGLQSEIGQVKQELSRKDtELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQR 516
Cdd:PRK01156 307 IENKKQILSNIDAEinkYHAIIKKLSVLQKDYNDYIKKKSRYD-DLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 517 AAILQTEVDALRLRLEEKETMLNKKTKQIqdmaeekgtqageihdlKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 596
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEI-----------------NVKLQDISSKVSSLNQRIRALRENLDELSRNMEM 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 597 LKERVK-----------SLQADTTNTDTALTTLEEALADKERTI----ERLKEQRDRDEREKQEEIDTYKKDLKDlkekv 661
Cdd:PRK01156 449 LNGQSVcpvcgttlgeeKSNHIINHYNEKKSRLEEKIREIEIEVkdidEKIVDLKKRKEYLESEEINKSINEYNK----- 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 662 sllqgdLSEKEASLLDLKEHASSLASSGLKK---DSRLKTLEIA-LEQKKEECLKMESQLKKAHEATLEARaSPEMSDRI 737
Cdd:PRK01156 524 ------IESARADLEDIKIKINELKDKHDKYeeiKNRYKSLKLEdLDSKRTSWLNALAVISLIDIETNRSR-SNEIKKQL 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 738 QQLEremarykdesskaqtevDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVanlkhKEQVEKKKSAQMLEEARRR 817
Cdd:PRK01156 597 NDLE-----------------SRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKY-----NEIQENKILIEKLRGKIDN 654
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 818 EDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 892
Cdd:PRK01156 655 YKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
564-780 |
1.32e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREK 643
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 644 QEEIDTYKK-------DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 713
Cdd:COG4942 100 EAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341070 714 ESQLKKAHEATLEARAspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIA 780
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
464-645 |
3.70e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 3.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktK 543
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------E 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 544 QIQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAL 615
Cdd:COG3883 91 RARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190
....*....|....*....|....*....|
gi 2035341070 616 TTLEEALADKERTIERLKEQRDRDEREKQE 645
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAE 200
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
532-971 |
3.77e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 532 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 611
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 612 DTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLK 691
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 692 KDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREM-----ARYKD----------ESSKAQT 756
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELifllqAREKEihdleiqltaIKTSEEH 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 757 EVDRLLEILKEVENEK-------NDKDKKIAELERQVKDQNKKVANLKHKEQ---VEKKKSAQML---EEARRREDSLSD 823
Cdd:pfam05483 469 YLKEVEDLKTELEKEKlknieltAHCDKLLLENKELTQEASDMTLELKKHQEdiiNCKKQEERMLkqiENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 824 SSQQLQDSLRKKDD----RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 899
Cdd:pfam05483 549 ELESVREEFIQKGDevkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEN 628
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341070 900 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 971
Cdd:pfam05483 629 KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
512-886 |
4.11e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 512 AKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKE 591
Cdd:pfam02463 150 MKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 592 KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLqgdLSEK 671
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL---LKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 672 EASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEEclkmESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDES 751
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL----KELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 752 SKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKvanlKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDS 831
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKE----EKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 832 LRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQ 886
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-760 |
4.95e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 508 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 587
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 588 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDerekQEEIDTYKKDLKDLKEKVSLLQGD 667
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR----REQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 668 LSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKkaheatlearaspEMSDRIQQLEREMARY 747
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE-------------ELEALIARLEAEAAAA 239
|
250
....*....|...
gi 2035341070 748 KDESSKAQTEVDR 760
Cdd:COG4942 240 AERTPAAGFAALK 252
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
285-848 |
5.16e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 5.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 285 RKTLEEMELRIETQKQTLNARDEsIKKLLEMLQskglsakATEEDHERTRrlAEAEMHVHHLESLLEQKEKENNMLREEM 364
Cdd:PRK02224 233 RETRDEADEVLEEHEERREELET-LEAEIEDLR-------ETIAETERER--EELAEEVRDLRERLEELEEERDDLLAEA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 365 HRrfenapDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLK 444
Cdd:PRK02224 303 GL------DDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 445 EELSSKDAQGEELKKRAAglqseigqvkqelsrkdtellALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEV 524
Cdd:PRK02224 377 EAVEDRREEIEELEEEIE---------------------ELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 525 DALRLRLEEKETMLNK----------KTKQIQDMAEEKgtqAGEIHDLKDMLDVKERKVNVLQKKIENLqEQLRDKEKQM 594
Cdd:PRK02224 436 RTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEED---RERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRI 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 595 SSLKERVKSLQadttntdTALTTLEEALADKERTIERLKEQRDRDE---REKQEEIDTYKKDLKDLKEKVSLLQGDLSEK 671
Cdd:PRK02224 512 ERLEERREDLE-------ELIAERRETIEEKRERAEELRERAAELEaeaEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 672 EASLLDLKEHASSLASSGLKKDSRlktleIALEQKKEECLKMESQLKKaheaTLEARaspemSDRIQQLEREMAryKDES 751
Cdd:PRK02224 585 KERIESLERIRTLLAAIADAEDEI-----ERLREKREALAELNDERRE----RLAEK-----RERKRELEAEFD--EARI 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 752 SKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKhkeqvEKKKSAQMLEEARRREDSLSDSSQQLQDS 831
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE-----ELRERREALENRVEALEALYDEAEELESM 723
|
570 580
....*....|....*....|....
gi 2035341070 832 -------LRKKDdrIEELEEALRE 848
Cdd:PRK02224 724 ygdlraeLRQRN--VETLERMLNE 745
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
729-982 |
5.34e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 729 ASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDK---KIAELERQVKDQNKKVANLKHKeqveKK 805
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEK----IR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 806 KSAQMLEEARRREDSLSDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVK 885
Cdd:PRK03918 263 ELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL----EEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 886 QELESMKAKLSSTQQSLAEKETHLTNLraERRKHLEEVLEmKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREK 965
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELY--EEAKAKKEELE-RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414
|
250
....*....|....*..
gi 2035341070 966 DRLVQQLKQQTQNRMKL 982
Cdd:PRK03918 415 GELKKEIKELKKAIEEL 431
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-966 |
6.23e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.56 E-value: 6.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 335 RLAEAEMHVHHLESLLEQKEKENNMLREEMHRRFE--------NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaeaeemRARLAARKQELEEILHELESRLEEEEERSQQLQNEKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 407 MLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELS---RKDTELL 483
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAeeeEKAKSLS 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 484 ALQTKLETLTNQFSD-------SKQHIEVLKESLtakEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA 556
Cdd:pfam01576 180 KLKNKHEAMISDLEErlkkeekGRQELEKAKRKL---EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEET 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 557 GEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQR 636
Cdd:pfam01576 257 AQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 637 DRDEREKQEEIdtyKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQ 716
Cdd:pfam01576 337 EEETRSHEAQL---QEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQ 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 717 LKkaheatlearaspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN------ 790
Cdd:pfam01576 414 LQ-------------ELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQellqee 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 791 --KKVANLKHKEQVEKKKSAQM-----LEEARRR-EDSLSDSSQQLQDSLRKKDDR---IEELEEA-------LRESVQI 852
Cdd:pfam01576 481 trQKLNLSTRLRQLEDERNSLQeqleeEEEAKRNvERQLSTLQAQLSDMKKKLEEDagtLEALEEGkkrlqreLEALTQQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 853 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALL 932
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALS 640
|
650 660 670
....*....|....*....|....*....|....
gi 2035341070 933 AAISEKDANIALLELSSSKKKTQEEVAALKREKD 966
Cdd:pfam01576 641 LARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
736-896 |
6.47e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.77 E-value: 6.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAnlKHKEQVEKKKSAQMLEEAR 815
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--KYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 816 RREDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 895
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
.
gi 2035341070 896 S 896
Cdd:COG1579 173 P 173
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
718-903 |
7.50e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.78 E-value: 7.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 718 KKAHEATLEARaspemsDRIQQLEREMARYKDEsskAQTEV-DRLLEILKEVENEKNDKDKKIAELERQVKDqnkKVANL 796
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKE---ALLEAkEEIHKLRNEFEKELRERRNELQKLEKRLLQ---KEENL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 797 KHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESARTNAEKQ 873
Cdd:PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARHEAAVL 174
|
170 180 190
....*....|....*....|....*....|..
gi 2035341070 874 VEEllmAMEKVKQELEsMKAK--LSSTQQSLA 903
Cdd:PRK12704 175 IKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
425-606 |
8.14e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 8.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 425 QMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKR---------AAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQ 495
Cdd:COG3206 169 RREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvdlseeAKLLLQQLSELESQLAEARAELAEAEARLAALRAQ 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 496 FSDSKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERK 572
Cdd:COG3206 249 LGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlASLEAELEALQAR 328
|
170 180 190
....*....|....*....|....*....|....*..
gi 2035341070 573 VNVLQKKIENLQEQLR---DKEKQMSSLKERVKSLQA 606
Cdd:COG3206 329 EASLQAQLAQLEARLAelpELEAELRRLEREVEVARE 365
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
445-981 |
9.35e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 9.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 445 EELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDS----------KQHIEVLKESLTAK- 513
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaarKQELEEILHELESRl 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 514 ---EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDK 590
Cdd:pfam01576 85 eeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 591 EKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERT---IERLKEQRDRDEREKQEEIdtykkdlKDLKEKVSLLQGD 667
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQI-------AELQAQIAELRAQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 668 LSEKEASLLDLKehaSSLASSGLKKDSRLKTLeialeqkkEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARY 747
Cdd:pfam01576 238 LAKKEEELQAAL---ARLEEETAQKNNALKKI--------RELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 748 KDESSKAQTEVDRLLEILKEVENEKNDKdkkiaELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ 827
Cdd:pfam01576 307 ELEDTLDTTAAQQELRSKREQEVTELKK-----ALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQA 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 828 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQslaeKET 907
Cdd:pfam01576 382 LESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEG----KNI 457
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2035341070 908 HLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMK 981
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
474-648 |
1.36e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.61 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 474 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 553
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 554 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK 633
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 2035341070 634 EQRDRDEREKQEEID 648
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
344-902 |
1.75e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 49.28 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 344 HHLESLLEQKEKENNMLREEMHR--RFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQinDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTS 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 422 EMKQMEVYRSHSKFM-KNKVEQLKEELSSKDAQGEELKKRAAGLqSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSK 500
Cdd:TIGR01612 1209 LEEVKGINLSYGKNLgKLFLEKIDEEKKKSEHMIKAMEAYIEDL-DEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDK 1287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 501 QHievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH----------------DLK 563
Cdd:TIGR01612 1288 DH------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneianiynilklnKIK 1361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALADKE--RTIERLKEQRDRDER 641
Cdd:TIGR01612 1362 KIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIKKIKELKNHILS 1433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 642 EkQEEIDTYKKDLKDLKEKVSLLQGDL-------------------SEKEASLLDLKEHASSLASSGLKKDSRLKTLE-- 700
Cdd:TIGR01612 1434 E-ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDEADKNAKAIEkn 1512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 701 -IALEQKKEECLKMES-----------------------QLKKAH-EATLEARASPEmsdRIQQLEREMARYKDESSKAQ 755
Cdd:TIGR01612 1513 kELFEQYKKDVTELLNkysalaiknkfaktkkdseiiikEIKDAHkKFILEAEKSEQ---KIKEIKKEKFRIEDDAAKND 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 756 TEVDRLLEILKEVENEKNdKDKKIAELERQVKDqnkkvaNLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKK 835
Cdd:TIGR01612 1590 KSNKAAIDIQLSLENFEN-KFLKISDIKKKIND------CLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESL 1662
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 836 DDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 902
Cdd:TIGR01612 1663 KDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
621-854 |
2.09e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 621 ALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE 700
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 701 IALEQKKEEclkMESQLKKAHEAtleARASPEM----SDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKD 776
Cdd:COG4942 97 AELEAQKEE---LAELLRALYRL---GRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2035341070 777 KKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 854
Cdd:COG4942 171 AERAELEALLAELEEERAAL----EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
441-982 |
2.48e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 441 EQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAIL 520
Cdd:pfam02463 191 DLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQV 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 521 QTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER 600
Cdd:pfam02463 271 LKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 601 VKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQG------DLSEKEAS 674
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQledllkEEKKEELE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 675 LLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKA 754
Cdd:pfam02463 431 ILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 755 QTE---VDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDS 831
Cdd:pfam02463 511 VLLaliKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 832 LRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTN 911
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341070 912 LRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 982
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLL 741
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
464-791 |
2.60e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.97 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 464 LQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 543
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 544 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 623
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 624 DKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 703
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 704 EQKKEECLKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*...
gi 2035341070 784 RQVKDQNK 791
Cdd:COG4372 361 KGAEAGVA 368
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
593-831 |
2.62e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.09 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 593 QMSSL-KERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEK 671
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 672 EASLLDLKEHASSLASSGLKKDSRLKTL--EIALEQKKEECL-----------KMESQLKKAHEATLEARaspEMSDRIQ 738
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPtctqqisegpdRITKIKDKLKELQHSLE---KLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 739 QLEREMARYKDESSKA---QTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEar 815
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLlelKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE-- 401
|
250
....*....|....*.
gi 2035341070 816 rrEDSLSDSSQQLQDS 831
Cdd:PHA02562 402 --KYHRGIVTDLLKDS 415
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
716-928 |
2.83e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 716 QLKKAHEATLEARAS-------PEMSDRIQQLEREMARYKDESSK-----AQTEVDRLLEILKEVENEKNDKDKKIAELE 783
Cdd:COG4913 236 DLERAHEALEDAREQiellepiRELAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 784 RQVKDQNKKVANLKhkeqvekkksAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALResvqitaeremvlAQE 863
Cdd:COG4913 316 ARLDALREELDELE----------AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLA-------------ALG 372
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 864 ESARTNAEkqveELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 928
Cdd:COG4913 373 LPLPASAE----EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
473-605 |
3.09e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 47.65 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 473 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 552
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 553 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 605
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
577-890 |
3.39e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 577 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLK-EQRDRD-EREKQEEIdtykKDL 654
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEI----AME 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 655 KDLKEKVSLLQGDLSEKEASLLDLKEHAsslassglkkdSRLKTLEIALEQKKEECLKMESQLKKAHEatlEARASpEMS 734
Cdd:pfam17380 374 ISRMRELERLQMERQQKNERVRQELEAA-----------RKVKILEEERQRKIQQQKVEMEQIRAEQE---EARQR-EVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 735 DRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKiAELERQVKDQNKKVAnlkhkEQVEKKKSAQMLEEA 814
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE-KRDRKRAEEQRRKIL-----EKELEERKQAMIEEE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 815 RRREdSLSDSSQQLQDSLRKKDDRiEELEEALRESVQITAER----EMVLAQEESARTNAEKQVEELLMAM---EKVKQE 887
Cdd:pfam17380 513 RKRK-LLEKEMEERQKAIYEEERR-REAEEERRKQQEMEERRriqeQMRKATEERSRLEAMEREREMMRQIvesEKARAE 590
|
...
gi 2035341070 888 LES 890
Cdd:pfam17380 591 YEA 593
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-935 |
3.65e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 473 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmLNKKTKQIQDMAEEK 552
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA--LEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 553 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR-DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIER 631
Cdd:COG4717 152 EERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 632 LKEQRDRDEREKQeeidtykkdlkdlkekvsllqgdLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECL 711
Cdd:COG4717 232 LENELEAAALEER-----------------------LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 712 KMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQnk 791
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE-- 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 792 kvANLKHKEQVEKKKSAQMLEEARRRedslsdssQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAE 871
Cdd:COG4717 367 --ELEQEIAALLAEAGVEDEEELRAA--------LEQAEEYQELKEELEELEEQLEE-----LLGELEELLEALDEEELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2035341070 872 KQVEELLMAMEKVKQELESMKAKLSSTQQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 935
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
713-946 |
4.79e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 713 MESQLKKAHEATLEARAS-----PEMSDRIQQLEREMARYKDE------SSKAQTEVDRLLEI---LKEVENEKNDKDKK 778
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELesqLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 779 IAELERQVKDQNKKVANLKHKEQVEKKKSAqmLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEalresvQITAEREM 858
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALRA------QLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 859 VLAQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALLAAi 935
Cdd:COG3206 314 ILASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARLAE- 381
|
250
....*....|.
gi 2035341070 936 SEKDANIALLE 946
Cdd:COG3206 382 ALTVGNVRVID 392
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-626 |
5.75e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 436 MKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSD----------SKQHIEV 505
Cdd:COG3883 28 LQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraralyrsggSVSYLDV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 506 LKESLTAKE--QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 583
Cdd:COG3883 108 LLGSESFSDflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQL 187
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2035341070 584 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKE 626
Cdd:COG3883 188 SAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
398-999 |
6.98e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 6.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 398 LRDLEEEIQML--KSNGALSTEEREEEMKQMEVYR---SHSKFMKNKVEQLKEELSSKD---AQGEELKKRAAGLQSEIG 469
Cdd:pfam12128 292 LRTLDDQWKEKrdELNGELSAADAAVAKDRSELEAledQHGAFLDADIETAAADQEQLPswqSELENLEERLKALTGKHQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 470 QVKQELSRKDtellalQTKLETLTNQFSDSKQHIEVLKEslTAKEQRAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ 546
Cdd:pfam12128 372 DVTAKYNRRR------SKIKEQNNRDIAGIKDKLAKIRE--ARDRQLAVAeddLQALESELREQLEAGKLEFNEEEYRLK 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 547 D-MAEEKGTQAGEIHDLKDMLDvkerkvnvlqkkIENLQEQL-RDKEKQMSSLKErVKSLQADTTNTDTALTTLEEALAD 624
Cdd:pfam12128 444 SrLGELKLRLNQATATPELLLQ------------LENFDERIeRAREEQEAANAE-VERLQSELRQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 625 KERtieRLKEQRDRDERekqeeidtykkdlkdlkekvslLQGDLSEKEASLL--------DLKEHASSLASSGLKKDSRL 696
Cdd:pfam12128 511 ASR---RLEERQSALDE----------------------LELQLFPQAGTLLhflrkeapDWEQSIGKVISPELLHRTDL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 697 KTLEIALEQKKEECL--------KMESQLKKAHEATLEARASP------EMSDRIQQLEREMARYKDESSKAQTEVDRLL 762
Cdd:pfam12128 566 DPEVWDGSVGGELNLygvkldlkRIDVPEWAASEEELRERLDKaeealqSAREKQAAAEEQLVQANGELEKASREETFAR 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 763 EILKEVE--------NEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQ-LQDSLR 833
Cdd:pfam12128 646 TALKNARldlrrlfdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAyWQVVEG 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 834 KKDDRIEELEEALrESVQITAEREMVLAQEESARTNAEKQVEELLMAmeKVKQELESMKAKLSSTQQSLAE--------K 905
Cdd:pfam12128 726 ALDAQLALLKAAI-AARRSGAKAELKALETWYKRDLASLGVDPDVIA--KLKREIRTLERKIERIAVRRQEvlryfdwyQ 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 906 ET---HLTNLRAERRKHLEEVLEMKQEaLLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVqqlkQQTQNRMKL 982
Cdd:pfam12128 803 ETwlqRRPRLATQLSNIERAISELQQQ-LARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCE----MSKLATLKE 877
|
650
....*....|....*..
gi 2035341070 983 MADNYEDDHFRSSRSNQ 999
Cdd:pfam12128 878 DANSEQAQGSIGERLAQ 894
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
735-1006 |
7.74e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.04 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 735 DRIQQLE--REMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLE 812
Cdd:pfam17380 351 ERIRQEErkRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 813 EARRREdslsdsSQQLQDSLRKKDDRIEELEEALRESVQITAEREmvlAQEESARTNAEKQVEELLMAMEKVKQELESmk 892
Cdd:pfam17380 431 EARQRE------VRRLEEERAREMERVRLEEQERQQQVERLRQQE---EERKRKKLELEKEKRDRKRAEEQRRKILEK-- 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 893 aKLSSTQQSLAEKEthltnlraERRKHLEEVLEMKQEALLAAISEKDAniallelsSSKKKTQEEVaalkREKDRLVQQL 972
Cdd:pfam17380 500 -ELEERKQAMIEEE--------RKRKLLEKEMEERQKAIYEEERRREA--------EEERRKQQEM----EERRRIQEQM 558
|
250 260 270
....*....|....*....|....*....|....
gi 2035341070 973 KQQTQNRMKLMADNYEDDHFRSSRSNQTNHKPSP 1006
Cdd:pfam17380 559 RKATEERSRLEAMEREREMMRQIVESEKARAEYE 592
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
473-685 |
8.22e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 473 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 552
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 553 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAD 624
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2035341070 625 KERTIERLKEQRDRDEREKQEEIDtykkdlkDLKEKVSLLQGDLSEKEASLLDLKEHASSL 685
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALA-------EAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
626-856 |
1.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 626 ERTIERLKEQRD--RDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDlkehasslassglkkdSRLKTLEIAL 703
Cdd:COG4913 241 HEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE----------------AELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 704 EQKKEECLKMESQLKKAHEATLEARASPEMS--DRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAE 781
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 782 LERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAER 856
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAE 459
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
791-964 |
1.39e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 791 KKVANLKHKEqvEKKKSAQMLEEARRREDSLSDssQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESartNA 870
Cdd:PRK12704 26 KKIAEAKIKE--AEEEAKRILEEAKKEAEAIKK--EALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE---NL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 871 EKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEallaaisekDANIALLElsSS 950
Cdd:PRK12704 99 DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---------EAKEILLE--KV 163
|
170
....*....|....
gi 2035341070 951 KKKTQEEVAALKRE 964
Cdd:PRK12704 164 EEEARHEAAVLIKE 177
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
570-848 |
1.97e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 570 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--ADKERTIERLKEQRDRDEREKQEei 647
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDD-- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 648 dtykkdlkdlkekVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEA 727
Cdd:COG4913 687 -------------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 728 RASPEMSDRI-----QQLEREMARYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELE--RQVKDQNKKVANLKHK 799
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPeyLALLDRLEEDGLPEYE 833
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2035341070 800 EQVEKKKSAQMleearrrEDSLSDSSQQLQDSLRKKDDRIEELEEALRE 848
Cdd:COG4913 834 ERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-590 |
2.13e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSkgLSAKATEEdheRTRRLAEAEMHV 343
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQS--EKDKKNKA---LAERKDSANERL 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 344 HHLESLLEQKEKENNMLREEMHRRFENApDSAKTKALQTVIEMKDSKISSmerglrdLEEEIQMLKSNGALSTEEREEEM 423
Cdd:pfam12128 685 NSLEAQLKQLDKKHQAWLEEQKEQKREA-RTEKQAYWQVVEGALDAQLAL-------LKAAIAARRSGAKAELKALETWY 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 424 KQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEelKKRAAGLQSEIGQVKQELSRKD---TELLALQTKLE----TLTNQF 496
Cdd:pfam12128 757 KRDLASLGVDPDVIAKLKREIRTLERKIERIA--VRRQEVLRYFDWYQETWLQRRPrlaTQLSNIERAISelqqQLARLI 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 497 SDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 576
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
330
....*....|....
gi 2035341070 577 QKKIENLQEQLRDK 590
Cdd:pfam12128 910 KKYVEHFKNVIADH 923
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-567 |
2.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 334 RRLAEAEMHVHHLESLLEQKEKEnnmlREEMHRRFEnapdsaktkALQTVIEMKDSKI--SSMERGLRDLEEEIQMLKSN 411
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAE----LDALQERRE---------ALQRLAEYSWDEIdvASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 412 GAlsteereeemkqmevyrshskfmknKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLET 491
Cdd:COG4913 684 SD-------------------------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 492 LTNQFS-DSKQHIEVLKESLTAKEQRAAI---LQTEVDALRLRLEEKETMLNKKTKQIQ----DMAEEKGTQAGEIHDLK 563
Cdd:COG4913 739 AEDLARlELRALLEERFAAALGDAVERELrenLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYL 818
|
....
gi 2035341070 564 DMLD 567
Cdd:COG4913 819 ALLD 822
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
436-596 |
2.21e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 436 MKNKVEQLkEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQ 515
Cdd:COG1579 2 MPEDLRAL-LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 516 R---------AAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ 586
Cdd:COG1579 81 QlgnvrnnkeYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEE 160
|
170
....*....|
gi 2035341070 587 LRDKEKQMSS 596
Cdd:COG1579 161 LEAEREELAA 170
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
278-974 |
2.24e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 278 AKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKEN 357
Cdd:TIGR00606 418 QSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 358 NMLREEMHRRFENAPDSAKTKALQTVIEMKD------SKISSMERGLRDLEEEIQMLKSNGAlsteereEEMKQMEVYRS 431
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNhhtttrTQMEMLTKDKMDKDEQIRKIKSRHS-------DELTSLLGYFP 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 432 HSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQfSDSKQHIEVLKESLT 511
Cdd:TIGR00606 571 NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLERLKEEIE 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 512 AKEQRAAILQTEVDALRLRLEEketmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKE 591
Cdd:TIGR00606 650 KSSKQRAMLAGATAVYSQFITQ----LTDENQSCCPVCQRVFQTEAELQEFISDL---QSKLRLAPDKLKSTESELKKKE 722
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 592 KQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEqrDRDEREKQEEidtykkDLKDLKEKVSLLQGDLSEK 671
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN--DIEEQETLLG------TIMPEEESAKVCLTDVTIM 794
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 672 EASLLDLKEHASSLASSGLKKDSRLKTLEIA-LEQKKEEclKMESQLKKAHEATLEARASPEMSDRIQQLEREMARYKDE 750
Cdd:TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQqVNQEKQE--KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE 872
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 751 SSKAQTEVDRLleilKEVENEKNDKDKKIAELERQVKDQNKKVANLkhkEQVEKKKSAQMLEEARRREDSLSDSSQQLQD 830
Cdd:TIGR00606 873 KLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPL---ETFLEKDQQEKEELISSKETSNKKAQDKVND 945
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 831 sLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAekQVEELLMAMEKVKQELESMKAKLSSTQQ---------S 901
Cdd:TIGR00606 946 -IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNA--QLEECEKHQEKINEDMRLMRQDIDTQKIqerwlqdnlT 1022
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2035341070 902 LAEKETHLTNLRAERRKHLEEVLEMKqeallaaisekdaniaLLELSSSKKKTQEEVAALKREKDRLVQQLKQ 974
Cdd:TIGR00606 1023 LRKRENELKEVEEELKQHLKEMGQMQ----------------VLQMKQEHQKLEENIDLIKRNHVLALGRQKG 1079
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
735-981 |
2.57e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.07 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 735 DRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENekndkdkkiaelerqvkdqnkkvANLKHKEQVEkkksaqmLEEA 814
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEA-----------------------AALQPGEEEE-------LEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 815 RRRedsLSdSSQQLQDSLRKKDDRIEELEEALRESVQiTAEREMV-LAQEESARTNAEKQVEELLMAMEKVKQELESMKA 893
Cdd:COG0497 215 RRR---LS-NAEKLREALQEALEALSGGEGGALDLLG-QALRALErLAEYDPSLAELAERLESALIELEEAASELRRYLD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 894 KLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKREKDRL 968
Cdd:COG0497 290 SLEFDPERLEEVEERLALLRRLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAELLEA 360
|
250
....*....|...
gi 2035341070 969 VQQLkqqTQNRMK 981
Cdd:COG0497 361 AEKL---SAARKK 370
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
776-937 |
2.60e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 776 DKKIAELERQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEAL------RES 849
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELED----ELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 850 VQITAEremvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQE 929
Cdd:COG1579 92 EALQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-ERE 166
|
....*...
gi 2035341070 930 ALLAAISE 937
Cdd:COG1579 167 ELAAKIPP 174
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-892 |
2.71e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.13 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 339 AEMHVHHLESLLEQKEKENNMLREEMHrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEiqmlksngalstee 418
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEQL--------SSLTQAHEEALSSLTSKAEGLEKSLNSLETK-------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 419 REEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGlqseigQVKQELSRKDTELlALQTKLETLtnqfsd 498
Cdd:pfam07111 185 RAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVGE------QVPPEVHSQTWEL-ERQELLDTM------ 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 499 skQHIEVLKESLTAKEQraaILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAgeihdlKDMLDVKERKVNVLQK 578
Cdd:pfam07111 252 --QHLQEDRADLQATVE---LLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKC------RSLLNRWREKVFALMV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 579 KIENLQEQLRDKEKQmssLKERVKSLQADTTNTDTALTTLEEALADK--ERTIERLK--------EQRDRDEREKQEEID 648
Cdd:pfam07111 321 QLKAQDLEHRDSVKQ---LRGQVAELQEQVTSQSQEQAILQRALQDKaaEVEVERMSakglqmelSRAQEARRRQQQQTA 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 649 TYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLA---SSGLKKDSRLKTL---EIALEQkkeecLKMESQLKKAHE 722
Cdd:pfam07111 398 SAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSnrlSYAVRKVHTIKGLmarKVALAQ-----LRQESCPPPPPA 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 723 ATLEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEilkEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQV 802
Cdd:pfam07111 473 PPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEV 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 803 EKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKddrIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAME 882
Cdd:pfam07111 550 ARQGQQESTEEAASLRQELTQQQEIYGQALQEK---VAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEK 626
|
650
....*....|
gi 2035341070 883 KVKQELESMK 892
Cdd:pfam07111 627 ERNQELRRLQ 636
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
682-896 |
2.79e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 682 ASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEATLEARAspEMSDRIQQLEREMARYKDESSKAQTEVDRL 761
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 762 LEILKEVENEKNDKDKKIAELER--QVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDSLSDSSQQ 827
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRalYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2035341070 828 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 896
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
421-903 |
3.01e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 3.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 421 EEMKQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELsRKDTELLALQTKLETLTNQFSDSK 500
Cdd:TIGR00606 200 QKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRL-KEIEHNLSKIMKLDNEIKALKSRK 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 501 QHIEVLKESLTAKeqraailqtevdalrlrleeKETMLNKKTKQIQDMAEEKGTQAGEihdlkdmldvKERKVNVLQKKI 580
Cdd:TIGR00606 279 KQMEKDNSELELK--------------------MEKVFQGTDEQLNDLYHNHQRTVRE----------KERELVDCQREL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 581 ENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRD-EREKQEEIDTYKKDLKDLKE 659
Cdd:TIGR00606 329 EKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFsERQIKNFHTLVIERQEDEAK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 660 KVSLLQGDLSEKEAslldLKEHASSlassglKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASpemSDRIQQ 739
Cdd:TIGR00606 409 TAAQLCADLQSKER----LKQEQAD------EIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS---SDRILE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 740 LEREMARYKDESSKAQ--TEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKS---AQMLEEA 814
Cdd:TIGR00606 476 LDQELRKAERELSKAEknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkdEQIRKIK 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 815 RRREDSLSD------SSQQLQDSLRKKDDRIEELEEALRE---SVQITAEREMVLAQEESARTNAEKQVEELLM---AME 882
Cdd:TIGR00606 556 SRHSDELTSllgyfpNKKQLEDWLHSKSKEINQTRDRLAKlnkELASLEQNKNHINNELESKEEQLSSYEDKLFdvcGSQ 635
|
490 500
....*....|....*....|.
gi 2035341070 883 KVKQELESMKAKLSSTQQSLA 903
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRA 656
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
754-968 |
3.05e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 754 AQTEVDRLLEILKEVENEKndkdKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLR 833
Cdd:COG4913 230 LVEHFDDLERAHEALEDAR----EQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 834 KKDDRIEELEEalresvQITAEREMVLAQEESARTNAEKQVEELlmamekvKQELESMKAKLSSTQQSLAEKETHLTNLR 913
Cdd:COG4913 306 RLEAELERLEA------RLDALREELDELEAQIRGNGGDRLEQL-------EREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2035341070 914 AERRKHLEEVLEMKQEA--LLAAISEKDANI--ALLELSSSKKKTQEEVAALKREKDRL 968
Cdd:COG4913 373 LPLPASAEEFAALRAEAaaLLEALEEELEALeeALAEAEAALRDLRRELRELEAEIASL 431
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
529-968 |
3.12e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 529 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 608
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 609 TNTDTALTTLEEALADKERTIERLKEQRDRDER----------EKQEEIDTYKKdlkdlkekvslLQGDlsekeasLLDL 678
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERhmkiindpvyKNRNYINDYFK-----------YKND-------IENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 679 KEHASSLASSGLKKDSRLKTLEIaLEQKKEECLKMESQLKKAHEATLEARA-SPEMSDRIQQLEREMARYKDESSKAQTE 757
Cdd:PRK01156 311 KQILSNIDAEINKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNNQILELEGyEMDYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 758 VDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDSLS--------------D 823
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL----NQRIRALRENLDELSRNMEMLNgqsvcpvcgttlgeE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 824 SSQQLQDSLRKKDDRIEE-LEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSstqqSL 902
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN----EL 541
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2035341070 903 AEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEkdanIALLELSSSKKKTQEEVAALKREKDRL 968
Cdd:PRK01156 542 KDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAV----ISLIDIETNRSRSNEIKKQLNDLESRL 603
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
697-848 |
4.27e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 697 KTLEIALEQKKEECLKMESQlKKAHEATLEARASPEMSDRIQQLEREmarykdesskaqteVDRLLEILKEVENEKNDKD 776
Cdd:COG2433 376 LSIEEALEELIEKELPEEEP-EAEREKEHEERELTEEEEEIRRLEEQ--------------VERLEAEVEELEAELEEKD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341070 777 KKIAELERQVKDqnkkvanLKHKEQVEKKKSaqmlEEARRREDSLSdssqQLQDSLRKKDDRIEELEEALRE 848
Cdd:COG2433 441 ERIERLERELSE-------ARSEERREIRKD----REISRLDREIE----RLERELEEERERIEELKRKLER 497
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
5.91e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.85 E-value: 5.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341070 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
736-880 |
7.11e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 736 RIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQ--NKKVANLKHKEQVEKKKSAQMLEE 813
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2035341070 814 ARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMA 880
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
369-605 |
8.00e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 8.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 369 ENAPDSAKTKALQTVIE-MKDSKISSMERGL--RDLEEEIQMLKSngalsTEEREEEMKQMEVYRSHS----KFMKNKVE 441
Cdd:PRK11281 30 ASNGDLPTEADVQAQLDaLNKQKLLEAEDKLvqQDLEQTLALLDK-----IDRQKEETEQLKQQLAQApaklRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 442 QLKEELSSKDAQG------EELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIE----VLKESLT 511
Cdd:PRK11281 105 ALKDDNDEETRETlstlslRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQqirnLLKGGKV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 512 AKEQ----RAAILQTEVDALRLRLEEKETMLNKKTkQIQDMAEEKgtqageihdlkdmLDVKERKVNVLQKKIENLQEQL 587
Cdd:PRK11281 185 GGKAlrpsQRVLLQAEQALLNAQNDLQRKSLEGNT-QLQDLLQKQ-------------RDYLTARIQRLEHQLQLLQEAI 250
|
250
....*....|....*...
gi 2035341070 588 RDKEKQMSslKERVKSLQ 605
Cdd:PRK11281 251 NSKRLTLS--EKTVQEAQ 266
|
|
| Gp58 |
pfam07902 |
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage ... |
384-606 |
1.38e-03 |
|
gp58-like protein; Sequences found in this family are derived from a number of bacteriophage and prophage proteins. They are similar to gp58, a minor structural protein of Lactococcus delbrueckii bacteriophage LL-H.
Pssm-ID: 369586 [Multi-domain] Cd Length: 594 Bit Score: 42.63 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 384 IEMKDSKIS-----------SMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKVEQLKEELSSKDA 452
Cdd:pfam07902 92 LELTDTKNSnlwskiklnnnGMLREYHNDTIKTEIVESAEGIATRISEDTDKKLALINETISGIRREYQDADRQLSSSYQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 453 QGEE-----LKKRAAGLQSEIGQVKQELSRK-DTELLALQTKLETLTNQFSDS-KQHIEVLKESLTAKEQraailqtevd 525
Cdd:pfam07902 172 AGIEglkatMASDKIGLQAEIQASAQGLSQRyDNEIRKLSAKITTTSSGTTEAyESKLDDLRAEFTRSNQ---------- 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 526 ALRLRLEEKETMLnkktkqiqdmaeeKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQ 605
Cdd:pfam07902 242 GMRTELESKISGL-------------QSTQQSTAYQISQEISNREGAVSRVQQDLDSYQRRLQDAEKNYSSLTQTVKGLQ 308
|
.
gi 2035341070 606 A 606
Cdd:pfam07902 309 S 309
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
811-1114 |
1.44e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 811 LEEARRREDSLSDSSQQLQDSLRKKDD-----------RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLM 879
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAElrelelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 880 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRaERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK-TQEEV 958
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILR-ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEeLKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 959 AALKREKDRLVQQLKQQTQNRMKLmadnyeDDHFRSSRSNqtnhkpspdqIIQPLLELDQNRSKLKLYIGHLTALchdrd 1038
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEEL------EEQLETLRSK----------VAQLELQIASLNNEIERLEARLERL----- 412
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2035341070 1039 plilrgltppasynadgeqaawENELQKMTQEQLQNELEKVEGDNAELQEFANTILQQIADHCPDiLEQVVNALEE 1114
Cdd:TIGR02168 413 ----------------------EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE-LERLEEALEE 465
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
431-902 |
1.68e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 431 SHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESl 510
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 511 takEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDML---DVKERKVNVLQKKIENLQ--- 584
Cdd:PRK01156 262 ---ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILsniDAEINKYHAIIKKLSVLQkdy 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 585 EQLRDKEKQMSSLKERVKSLQadttntdtaltTLEEALADKERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLL 664
Cdd:PRK01156 339 NDYIKKKSRYDDLNNQILELE-----------GYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 665 QGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE--IALEQKKEECLKMESQLKKAHEATLEARASPEMS---DRIQQ 739
Cdd:PRK01156 408 KKELNEINVKLQDISSKVSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSrleEKIRE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 740 LEREMARYKDESSKAQTEVDRLL-EILKEVENEKNDKDKKIAELERQVKDQNK-KVANLKHKEQVEKKKSAQMLEEARRR 817
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDIKIKINElKDKHDKYEEIKNRYKSLKLEDLDSKR 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 818 EDSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSS 897
Cdd:PRK01156 568 TSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEK 647
|
....*
gi 2035341070 898 TQQSL 902
Cdd:PRK01156 648 LRGKI 652
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
818-988 |
2.37e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 818 EDSLSDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 897
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 898 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 975
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 2035341070 976 TQNRMKLMADNYE 988
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
703-873 |
2.39e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 42.13 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 703 LEQKKEECLK----MESQLKKAHEATL-------------EARA-SPEMSDRIQQLE--REMARYKDESSKAQTE--VDR 760
Cdd:NF012221 1574 LEQEKQQQLAaisgSQSQLESTDQNALetngqaqrdaileESRAvTKELTTLAQGLDalDSQATYAGESGDQWRNpfAGG 1653
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 761 LLE-ILKEVENEKNDKDKKIAELERQVKDQNKKVanlkhKEQVEKK-----KSAQMLEEARRR-EDSLSDSSQQLQDSLR 833
Cdd:NF012221 1654 LLDrVQEQLDDAKKISGKQLADAKQRHVDNQQKV-----KDAVAKSeagvaQGEQNQANAEQDiDDAKADAEKRKDDALA 1728
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2035341070 834 KKDD--RIEELEEALRESVQITAEREMVLAQEESARTNAEKQ 873
Cdd:NF012221 1729 KQNEaqQAESDANAAANDAQSRGEQDASAAENKANQAQADAK 1770
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
732-938 |
2.40e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 732 EMSDRIQQLEREM-ARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKD-QNKKVANLKHKEQVEKKKSAQ 809
Cdd:PRK05771 54 KLSEALDKLRSYLpKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISElENEIKELEQEIERLEPWGNFD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 810 M-LEEARRREDSLSD----SSQQLQDSLRKKDDRIEELEEALRESV----------QITAEREMVLAQEESARTNAEKQV 874
Cdd:PRK05771 134 LdLSLLLGFKYVSVFvgtvPEDKLEELKLESDVENVEYISTDKGYVyvvvvvlkelSDEVEEELKKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 875 EELLmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEALL-AAISEK 938
Cdd:PRK05771 214 SELI---REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
375-606 |
2.49e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKS-NGALSTEEREE-EMKQMEVYRShskfmknKVEQLKEELSSKDA 452
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKlLLQQLSELES-------QLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 453 QGEELKKRAAGLQSEIGQVKQ--ELSRKDTELLALQTKLETLTNQFSDS-------KQHIEVLKESLTAKEQRAAI-LQT 522
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRILAsLEA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 523 EVDALRLRLEEKETMLNKKTKQIQDMAEekgtqageihdlkdmldvkerkvnvLQKKIENLQEQLRDKEKQMSSLKERVK 602
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPE-------------------------LEAELRRLEREVEVARELYESLLQRLE 375
|
....
gi 2035341070 603 SLQA 606
Cdd:COG3206 376 EARL 379
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
663-985 |
3.70e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 663 LLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEARASPEMSDR-IQQLE 741
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKeLSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 742 REMARYKDESSKAQTE-VDRLLEILKEVENEKNDKDKKIAELERqVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDS 820
Cdd:pfam07888 111 EELSEEKDALLAQRAAhEARIRELEEDIKTLTQRVLERETELER-MKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 821 LSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQeesartnaekqveellmaMEKVKQELESMKAKLSSTQQ 900
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE------------------NEALLEELRSLQERLNASER 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 901 SLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLE-----------LSSSKKKTQEEVAALKREKDRLV 969
Cdd:pfam07888 252 KVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREgrarwaqeretLQQSAEADKDRIEKLSAELQRLE 331
|
330
....*....|....*.
gi 2035341070 970 QQLKQQTQNRMKLMAD 985
Cdd:pfam07888 332 ERLQEERMEREKLEVE 347
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
564-809 |
3.90e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 564 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDERek 643
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 644 qeeiDTYKKDLKDLKEKVSLLQGDLSEkeasLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEa 723
Cdd:COG3883 94 ----ALYRSGGSVSYLDVLLGSESFSD----FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKA- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 724 tlearaspEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE 803
Cdd:COG3883 165 --------ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
....*.
gi 2035341070 804 KKKSAQ 809
Cdd:COG3883 237 AAAAAA 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
809-975 |
5.08e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 809 QMLEEARRREDSLSDSsQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEEsartnaekqveellmaMEKVKQEL 888
Cdd:COG4913 242 EALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAE----------------LEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 889 ESMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEALLAAISEKDANIALLE-----LSSSKKKTQEEVAA 960
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNggdRLEQLEREIERLERELEERERRRARLEallaaLGLPLPASAEEFAA 384
|
170
....*....|....*
gi 2035341070 961 LKREKDRLVQQLKQQ 975
Cdd:COG4913 385 LRAEAAALLEALEEE 399
|
|
| GAS |
pfam13851 |
Growth-arrest specific micro-tubule binding; This family is the highly conserved central ... |
442-632 |
5.12e-03 |
|
Growth-arrest specific micro-tubule binding; This family is the highly conserved central region of a number of metazoan proteins referred to as growth-arrest proteins. In mouse, Gas8 is predominantly a testicular protein, whose expression is developmentally regulated during puberty and spermatogenesis. In humans, it is absent in infertile males who lack the ability to generate gametes. The localization of Gas8 in the motility apparatus of post-meiotic gametocytes and mature spermatozoa, together with the detection of Gas8 also in cilia at the apical surfaces of epithelial cells lining the pulmonary bronchi and Fallopian tubes suggests that the Gas8 protein may have a role in the functioning of motile cellular appendages. Gas8 is a microtubule-binding protein localized to regions of dynein regulation in mammalian cells.
Pssm-ID: 464001 [Multi-domain] Cd Length: 200 Bit Score: 39.50 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 442 QLKEELsskdaqgEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHievlKESLTAKEQRAAILQ 521
Cdd:pfam13851 30 SLKEEI-------AELKKKEERNEKLMSEIQQENKRLTEPLQKAQEEVEELRKQLENYEKD----KQSLKNLKARLKVLE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 522 TEVDALRLRLEEKEtMLNKKTKQIQDMAEEKGTQAgeIHDLKDMLDVKErkvNVLQKKIENLQEQLRDKEKQMSSLKERV 601
Cdd:pfam13851 99 KELKDLKWEHEVLE-QRFEKVERERDELYDKFEAA--IQDVQQKTGLKN---LLLEKKLQALGETLEKKEAQLNEVLAAA 172
|
170 180 190
....*....|....*....|....*....|.
gi 2035341070 602 KslqADTTNTDTALTTLEEALADKERTIERL 632
Cdd:pfam13851 173 N---LDPDALQAVTEKLEDVLESKNQLIKDL 200
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
465-977 |
5.35e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 465 QSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 544
Cdd:TIGR00618 151 QGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 545 IQD-MAEEKGTQA--GEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKS--LQADTTNTDTALTTLE 619
Cdd:TIGR00618 231 LREaLQQTQQSHAylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAapLAAHIKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 620 EALAD-KERTIERLKEQRDRDEREKQEEIDTYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKT 698
Cdd:TIGR00618 311 RIHTElQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 699 LEialeqKKEECLKMESQLKKAHEATLEARASPEMSDRIQ--QLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKD 776
Cdd:TIGR00618 391 LT-----QKLQSLCKELDILQREQATIDTRTSAFRDLQGQlaHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 777 KKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRiEELEEALRESVQITAER 856
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT-RRMQRGEQTYAQLETSE 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 857 EMVLAQEESARtnaeKQVEELLMAMEKVKQELEsmkaKLSSTQQSLAEKETHLTNLRAERRKHLEEVLE---MKQEALLA 933
Cdd:TIGR00618 545 EDVYHQLTSER----KQRASLKEQMQEIQQSFS----ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEaedMLACEQHA 616
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2035341070 934 AISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQ 977
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERV 660
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
578-974 |
5.64e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 578 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAlttlEEALADKERTIERLKEQRDRDEREKQeeidtykkdLKDL 657
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL----EEELEELEAELEELREELEKLEKLLQ---------LLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 658 KEKVSLLQGDLSEKEASLLDLKEHASSLASsglkKDSRLKTLEIALEQKKEECLKMESQLKKAHEATLEaraspEMSDRI 737
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQ-----DLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 738 QQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKD--KKIAELERQV----------------------------- 786
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleERLKEARLLLliaaallallglggsllsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 787 ----------KDQNKKVANLKHKEQVEKKKSAQMLEEARRRE--DSLSDSSQQLQDSLRKKDDRIEELEEALRESVQITA 854
Cdd:COG4717 282 vlgllallflLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 855 EREMVLAQEESARTNAEKQVEELLMAMEKVKQelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAA 934
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQ------------AEEYQELKEELEELEEQLEELLGEL-----EELLEA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 2035341070 935 ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 974
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
331-816 |
5.79e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 331 ERTRRLAEAEMHVHHLESLLEQKEKENNMLREE---MHRRFENAPDSAKTKALQTVIEMKDSKISSMERG---LRDLEEE 404
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREElekLEKLLQLLPLYQELEALEAELAELPERLEELEERleeLRELEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 405 IQMLKSNGALSTEEREEEMKQMEVYrshskfMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIGQVKQELSRKDTELLA 484
Cdd:COG4717 165 LEELEAELAELQEELEELLEQLSLA------TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 485 LQTkletltnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktkqiqdmaeekgTQAGEIHDLKD 564
Cdd:COG4717 239 AAL------------EERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF---------------LVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 565 MLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTIERLKEQRDRDEREKQ 644
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 645 EEidtykkdlkdlkekvSLLQGDLSEKEASLLDLkehasslassgLKKDSRLKTLEIALEQKKEEClkmeSQLKKAHEAT 724
Cdd:COG4717 372 IA---------------ALLAEAGVEDEEELRAA-----------LEQAEEYQELKEELEELEEQL----EELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 725 LEARASPEMSDRIQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKN--DKDKKIAELERQVKDQNKKVANLK----- 797
Cdd:COG4717 422 LEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALKlalel 501
|
490 500
....*....|....*....|..
gi 2035341070 798 ---HKEQVEKKKSAQMLEEARR 816
Cdd:COG4717 502 leeAREEYREERLPPVLERASE 523
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
821-984 |
6.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 821 LSDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQ 900
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 901 SLAEKETHLTNLRAERRKHLEEVLEMKQ----EALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT 976
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
....*...
gi 2035341070 977 QNRMKLMA 984
Cdd:COG4942 171 AERAELEA 178
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
328-566 |
6.44e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 328 EDHERTRRLAE-AEMHVHHLESLLEQKEKENNMLREEMHRRFENAPdsAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:COG4913 235 DDLERAHEALEdAREQIELLEPIRELAERYAAARERLAELEYLRAA--LRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 407 mlksngalSTEEREEEMKQmevyrshskfmknKVEQLKEELSSKDAQgeelkkRAAGLQSEIGQVKQELSRKDTELLALQ 486
Cdd:COG4913 313 --------RLEARLDALRE-------------ELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 487 TKLETLTNQFSDSKQ----HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 562
Cdd:COG4913 366 ALLAALGLPLPASAEefaaLRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
....
gi 2035341070 563 KDML 566
Cdd:COG4913 446 RDAL 449
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
532-641 |
6.62e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 532 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 610
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110
....*....|....*....|....*....|..
gi 2035341070 611 TDTALTTLEEALADKERTIERL-KEQRDRDER 641
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELiEEQLQELER 146
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
395-844 |
6.91e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.80 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 395 ERGLRDLEEEIQMLKSNGALSTEEREEEM-----KQMEVYRSHSKFMKNKVEQLKEELSSKDAQGEELKKRAAGLQSEIG 469
Cdd:PTZ00108 998 EYLLGKLERELARLSNKVRFIKHVINGELvitnaKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDED 1077
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 470 QVKQELSRKDTELLaLQTKLETLTnqfsdsKQHIEVLKESLTAKEQRAAILqtevdalrlrleeketmlnkKTKQIQDMA 549
Cdd:PTZ00108 1078 DEEELGAAVSYDYL-LSMPIWSLT------KEKVEKLNAELEKKEKELEKL--------------------KNTTPKDMW 1130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 550 EEkgtqageihDLKDMLDVKERKVNVLQKKIeNLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKERTI 629
Cdd:PTZ00108 1131 LE---------DLDKFEEALEEQEEVEEKEI-AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 630 ERLKEQRDRDERekqeeidtykkdlkdlkEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEE 709
Cdd:PTZ00108 1201 VDSDEKRKLDDK-----------------PDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSD 1263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 710 CLKMESQLKKAHEATLEARASPEMSDriQQLEREMARYKDESSKAQTEVDRLLEILKEVENEKNDKDKKIAElerqvkdq 789
Cdd:PTZ00108 1264 DLSKEGKPKNAPKRVSAVQYSPPPPS--KRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR-------- 1333
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 790 nkkvaNLKHKEQVEKKKSAQMLEEARRREDSLSDSSqQLQDSLRKKDDRIEELEE 844
Cdd:PTZ00108 1334 -----KKKSKTRVKQASASQSSRLLRRPRKKKSDSS-SEDDDDSEVDDSEDEDDE 1382
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
769-907 |
6.98e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 6.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 769 ENEKNDKDKKIAELERQVKDQNKKVAnlkhkeqvekkKSAQMLEEARRREDSLSDSSQQLQDSLRKKDDRIEELEEALRE 848
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLA-----------AEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQ 346
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2035341070 849 SVQIT------AEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKET 907
Cdd:PRK04863 347 QEKIEryqadlEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT 411
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-535 |
8.19e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSK------FMKNKVEQLKEELS 448
Cdd:COG4942 48 KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAellralYRLGRQPPLALLLS 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2035341070 449 SKD-------------------AQGEELKKRAAGLQSEIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKES 509
Cdd:COG4942 128 PEDfldavrrlqylkylaparrEQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE 207
|
170 180
....*....|....*....|....*.
gi 2035341070 510 LTAKEQRAAILQTEVDALRLRLEEKE 535
Cdd:COG4942 208 LAELAAELAELQQEAEELEALIARLE 233
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
918-989 |
9.13e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 9.13e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2035341070 918 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 989
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| |
