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Conserved domains on  [gi|2077860356|ref|NP_001382755|]
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RING-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mplasa_alph_rch super family cl37461
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 625-954 5.55e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


The actual alignment was detected with superfamily member TIGR04523:

Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 50.40  E-value: 5.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 625 KEMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEakkklelkleeVETWKKQVSAL 704
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSE-----------ISDLNNQKEQD 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 705 WNcksdhEALNTKLSKcveKGKKLKEINEKVSNSRDQLStkvfelklQLNRELETAE-TLKNERKDSAKLRNEVNQLKDQ 783
Cdd:TIGR04523 308 WN-----KELKSELKN---QEKKLEEIQNQISQNNKIIS--------QLNEQISQLKkELTNSESENSEKQRELEEKQNE 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 784 LEREREIAYGLQEEASKLRVGTgKDVKRQILESE--NAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNH 861
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQI-NDLESKIQNQEklNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 862 TEEgpsNHEDENGSYRKVLwkHQKIKDL---YRKGEQ-----QREAEEMVNKLISLNQHPE---------VQHISFL--- 921
Cdd:TIGR04523 451 VKE---LIIKNLDNTRESL--ETQLKVLsrsINKIKQnleqkQKELKSKEKELKKLNEEKKeleekvkdlTKKISSLkek 525

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2077860356 922 --ELESFKKQISDYLHTVEKNIQKIKRNDDFTNLE 954
Cdd:TIGR04523 526 ieKLESEKKEKESKISDLEDELNKDDFELKKENLE 560
 
Name Accession Description Interval E-value
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 625-954 5.55e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 50.40  E-value: 5.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 625 KEMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEakkklelkleeVETWKKQVSAL 704
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSE-----------ISDLNNQKEQD 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 705 WNcksdhEALNTKLSKcveKGKKLKEINEKVSNSRDQLStkvfelklQLNRELETAE-TLKNERKDSAKLRNEVNQLKDQ 783
Cdd:TIGR04523 308 WN-----KELKSELKN---QEKKLEEIQNQISQNNKIIS--------QLNEQISQLKkELTNSESENSEKQRELEEKQNE 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 784 LEREREIAYGLQEEASKLRVGTgKDVKRQILESE--NAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNH 861
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQI-NDLESKIQNQEklNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 862 TEEgpsNHEDENGSYRKVLwkHQKIKDL---YRKGEQ-----QREAEEMVNKLISLNQHPE---------VQHISFL--- 921
Cdd:TIGR04523 451 VKE---LIIKNLDNTRESL--ETQLKVLsrsINKIKQnleqkQKELKSKEKELKKLNEEKKeleekvkdlTKKISSLkek 525

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2077860356 922 --ELESFKKQISDYLHTVEKNIQKIKRNDDFTNLE 954
Cdd:TIGR04523 526 ieKLESEKKEKESKISDLEDELNKDDFELKKENLE 560
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
726-958 7.89e-06

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 49.13  E-value: 7.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 726 KKLKEINEKVSNSRDQLSTKVFELKlQLNRELETAET-LKNERKDSAKLRNEVNQLKDQLEREREIAYGLQEEASKLrvg 804
Cdd:COG4372    52 EELEQAREELEQLEEELEQARSELE-QLEEELEELNEqLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDL--- 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 805 tgkDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEEGPSNHEDENGSYRKVLWK-- 882
Cdd:COG4372   128 ---EQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELae 204

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2077860356 883 -HQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHISFLELESFKKQISDYLHTVEKNIQKIKRNDDFTNLEPLPE 958
Cdd:COG4372   205 aEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIA 281
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 627-916 2.75e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 48.18  E-value: 2.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 627 MKTVQNVLKDVQTQLTTMKHKSEKFEKNMtgsversKKAEQRLQEEKLDHV-------KIQVEAKKKLELKLEEVETWKK 699
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEV-------EDLKTELEKEKLKNIeltahcdKLLLENKELTQEASDMTLELKK 517

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 700 QVSALWNCKSDHEALNTKLSKCVEKGKKLKEINEKVsnsRDQLSTKVFELKLQLNRELETAETLKNE----RKDSAKLRN 775
Cdd:pfam05483 518 HQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV---REEFIQKGDEVKCKLDKSEENARSIEYEvlkkEKQMKILEN 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 776 EVNQLKDQLEREREIAYGLQEEASKL-RVGTGK-------DVKRQILESENAQLRQ------EKQRREMEKSSLLETKMI 841
Cdd:pfam05483 595 KCNNLKKQIENKNKNIEELHQENKALkKKGSAEnkqlnayEIKVNKLELELASAKQkfeeiiDNYQKEIEDKKISEEKLL 674

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 842 LSRQN-----EEQHKLiQSLMD---QNHTEEGPSNHEDENGSYRKVLWKHQKIKDLYRKGEQQR---------EAEEMVN 904
Cdd:pfam05483 675 EEVEKakaiaDEAVKL-QKEIDkrcQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQssakaaleiELSNIKA 753

                         330
                  ....*....|..
gi 2077860356 905 KLISLNQHPEVQ 916
Cdd:pfam05483 754 ELLSLKKQLEIE 765
PTZ00121 PTZ00121
MAEBL; Provisional
 626-918 1.26e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  626 EMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEAKKKLELKLEEVETWKKQVSALW 705
Cdd:PTZ00121  1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  706 NCKSDHEALNTKLSKCVEKGKKLKEINEKVSNSRDQLSTKVFELKlqlnrelETAETLKNERKDSAKLRNEVNQLKDQLE 785
Cdd:PTZ00121  1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK-------KKAEEAKKAEEDEKKAAEALKKEAEEAK 1702

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  786 REREIAYGLQEEASKL-RVGTGKDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEE 864
Cdd:PTZ00121  1703 KAEELKKKEAEEKKKAeELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2077860356  865 GPSNHEDEngsyRKVLWKHQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHI 918
Cdd:PTZ00121  1783 EELDEEDE----KRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
 
Name Accession Description Interval E-value
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 625-954 5.55e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 50.40  E-value: 5.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 625 KEMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEakkklelkleeVETWKKQVSAL 704
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSE-----------ISDLNNQKEQD 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 705 WNcksdhEALNTKLSKcveKGKKLKEINEKVSNSRDQLStkvfelklQLNRELETAE-TLKNERKDSAKLRNEVNQLKDQ 783
Cdd:TIGR04523 308 WN-----KELKSELKN---QEKKLEEIQNQISQNNKIIS--------QLNEQISQLKkELTNSESENSEKQRELEEKQNE 371

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 784 LEREREIAYGLQEEASKLRVGTgKDVKRQILESE--NAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNH 861
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQI-NDLESKIQNQEklNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDS 450

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 862 TEEgpsNHEDENGSYRKVLwkHQKIKDL---YRKGEQ-----QREAEEMVNKLISLNQHPE---------VQHISFL--- 921
Cdd:TIGR04523 451 VKE---LIIKNLDNTRESL--ETQLKVLsrsINKIKQnleqkQKELKSKEKELKKLNEEKKeleekvkdlTKKISSLkek 525

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2077860356 922 --ELESFKKQISDYLHTVEKNIQKIKRNDDFTNLE 954
Cdd:TIGR04523 526 ieKLESEKKEKESKISDLEDELNKDDFELKKENLE 560
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
726-958 7.89e-06

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 49.13  E-value: 7.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 726 KKLKEINEKVSNSRDQLSTKVFELKlQLNRELETAET-LKNERKDSAKLRNEVNQLKDQLEREREIAYGLQEEASKLrvg 804
Cdd:COG4372    52 EELEQAREELEQLEEELEQARSELE-QLEEELEELNEqLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDL--- 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 805 tgkDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEEGPSNHEDENGSYRKVLWK-- 882
Cdd:COG4372   128 ---EQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELae 204

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2077860356 883 -HQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHISFLELESFKKQISDYLHTVEKNIQKIKRNDDFTNLEPLPE 958
Cdd:COG4372   205 aEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIA 281
SCP-1 pfam05483
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ...
 627-916 2.75e-05

Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.


Pssm-ID: 114219 [Multi-domain]  Cd Length: 787  Bit Score: 48.18  E-value: 2.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 627 MKTVQNVLKDVQTQLTTMKHKSEKFEKNMtgsversKKAEQRLQEEKLDHV-------KIQVEAKKKLELKLEEVETWKK 699
Cdd:pfam05483 445 LQAREKEIHDLEIQLTAIKTSEEHYLKEV-------EDLKTELEKEKLKNIeltahcdKLLLENKELTQEASDMTLELKK 517

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 700 QVSALWNCKSDHEALNTKLSKCVEKGKKLKEINEKVsnsRDQLSTKVFELKLQLNRELETAETLKNE----RKDSAKLRN 775
Cdd:pfam05483 518 HQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV---REEFIQKGDEVKCKLDKSEENARSIEYEvlkkEKQMKILEN 594

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 776 EVNQLKDQLEREREIAYGLQEEASKL-RVGTGK-------DVKRQILESENAQLRQ------EKQRREMEKSSLLETKMI 841
Cdd:pfam05483 595 KCNNLKKQIENKNKNIEELHQENKALkKKGSAEnkqlnayEIKVNKLELELASAKQkfeeiiDNYQKEIEDKKISEEKLL 674

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 842 LSRQN-----EEQHKLiQSLMD---QNHTEEGPSNHEDENGSYRKVLWKHQKIKDLYRKGEQQR---------EAEEMVN 904
Cdd:pfam05483 675 EEVEKakaiaDEAVKL-QKEIDkrcQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQssakaaleiELSNIKA 753

                         330
                  ....*....|..
gi 2077860356 905 KLISLNQHPEVQ 916
Cdd:pfam05483 754 ELLSLKKQLEIE 765
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 624-864 9.24e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.59  E-value: 9.24e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  624 RKEMKTVQNVLKDVQTQL----TTMKHKSEKFEKNMTGSVERSKKAEQ-------------------RLQEEKLDHVKIQ 680
Cdd:TIGR02168  238 REELEELQEELKEAEEELeeltAELQELEEKLEELRLEVSELEEEIEElqkelyalaneisrleqqkQILRERLANLERQ 317

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  681 VEAKKKLELKLE--------EVETWKKQVSALwncKSDHEALNTKLSKCVEKGKKLKEINEKVSNSRDQLSTKVFELKLQ 752
Cdd:TIGR02168  318 LEELEAQLEELEskldelaeELAELEEKLEEL---KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  753 LNreletaetlknerkdsaKLRNEVNQLKDQLERereiaygLQEEasklrvgtgkdvkRQILESENAQLRQEKQRREMEk 832
Cdd:TIGR02168  395 IA-----------------SLNNEIERLEARLER-------LEDR-------------RERLQQEIEELLKKLEEAELK- 436

                          250       260       270
                   ....*....|....*....|....*....|..
gi 2077860356  833 ssllETKMILSRQNEEQHKLIQSLMDQNHTEE 864
Cdd:TIGR02168  437 ----ELQAELEELEEELEELQEELERLEEALE 464
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 647-918 4.28e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 4.28e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  647 KSEKFEKNMTGSVERSKKAEQRL--QEEKLDHVKIQVEAKKKLelkleeVETWKKQVSALwncKSDHEALNTKLSKCVEK 724
Cdd:TIGR02168  664 GSAKTNSSILERRREIEELEEKIeeLEEKIAELEKALAELRKE------LEELEEELEQL---RKELEELSRQISALRKD 734

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  725 GKKLKEINEKVSNSRDQLSTKVFELKLQ---LNRELETAETLKNERKD-SAKLRNEVNQLKDQLEREREIAYGLQEEASK 800
Cdd:TIGR02168  735 LARLEAEVEQLEERIAQLSKELTELEAEieeLEERLEEAEEELAEAEAeIEELEAQIEQLKEELKALREALDELRAELTL 814

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  801 LRVG-TGKDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQ--------NEEQHKLIQSLMDQNHTEEGPSNHED 871
Cdd:TIGR02168  815 LNEEaANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEieeleeliEELESELEALLNERASLEEALALLRS 894

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 2077860356  872 ENGSYRKVLWKH-QKIKDLYRKGEQQREA-EEMVNKLISLNQhpEVQHI 918
Cdd:TIGR02168  895 ELEELSEELRELeSKRSELRRELEELREKlAQLELRLEGLEV--RIDNL 941
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 661-864 1.26e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 1.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 661 RSKKAEQRLQEEKLDHVKIQVEAKKKLelkleeVETWKKQVSALwncKSDHEALNTKLSkcvEKGKKLKEINEKVSNSRD 740
Cdd:COG1196   235 RELEAELEELEAELEELEAELEELEAE------LAELEAELEEL---RLELEELELELE---EAQAEEYELLAELARLEQ 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 741 QLStkvfELKLQLNRELETAETLKNERkdsAKLRNEVNQLKDQLEREREIAYGLQEEASKLRvgtgkdVKRQILESENAQ 820
Cdd:COG1196   303 DIA----RLEERRRELEERLEELEEEL---AELEEELEELEEELEELEEELEEAEEELEEAE------AELAEAEEALLE 369

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 2077860356 821 LRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEE 864
Cdd:COG1196   370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL 413
PTZ00121 PTZ00121
MAEBL; Provisional
 626-918 1.26e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  626 EMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEAKKKLELKLEEVETWKKQVSALW 705
Cdd:PTZ00121  1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  706 NCKSDHEALNTKLSKCVEKGKKLKEINEKVSNSRDQLSTKVFELKlqlnrelETAETLKNERKDSAKLRNEVNQLKDQLE 785
Cdd:PTZ00121  1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK-------KKAEEAKKAEEDEKKAAEALKKEAEEAK 1702

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  786 REREIAYGLQEEASKL-RVGTGKDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEE 864
Cdd:PTZ00121  1703 KAEELKKKEAEEKKKAeELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2077860356  865 GPSNHEDEngsyRKVLWKHQKIKDLYRKGEQQREAEEMVNKLISLNQHPEVQHI 918
Cdd:PTZ00121  1783 EELDEEDE----KRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAI 1832
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 615-944 1.64e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.65  E-value: 1.64e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  615 ANCTDCSGVRKEMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEakkklelkLEEV 694
Cdd:TIGR00618  525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNI--------TVRL 596

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  695 ETWKKQVSALwncksdhealntKLSKCVEKGKKLKEINEKVSNSRDQLSTKVF--ELKLQLNRELETAETLKNERKDSAK 772
Cdd:TIGR00618  597 QDLTEKLSEA------------EDMLACEQHALLRKLQPEQDLQDVRLHLQQCsqELALKLTALHALQLTLTQERVREHA 664

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  773 LRNEVNQLKDQLEREREiaygLQEEASKLRVGTGkdvKRQILESENAQLRQEKQ-----RREMEKSSLLETKMI--LSRQ 845
Cdd:TIGR00618  665 LSIRVLPKELLASRQLA----LQKMQSEKEQLTY---WKEMLAQCQTLLRELEThieeyDREFNEIENASSSLGsdLAAR 737

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  846 NEEQHKLIQSLMDQNHTEEGPSNHEDENGSYRKV--LWKHQKIKDLYRKGE-QQREAEEMVNKLISL----NQH-PEVQH 917
Cdd:TIGR00618  738 EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTaaLQTGAELSHLAAEIQfFNRLREEDTHLLKTLeaeiGQEiPSDED 817

                          330       340
                   ....*....|....*....|....*..
gi 2077860356  918 ISFLELESFKKQISDYLHTVEKNIQKI 944
Cdd:TIGR00618  818 ILNLQCETLVQEEEQFLSRLEEKSATL 844
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
694-947 1.71e-03

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 41.43  E-value: 1.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 694 VETWKKQvsalwncksdHEALNTKLSKCVEKGKKLKE----INEKVSNSRDQLStkvfELKLQLNRELETAETLKNERKD 769
Cdd:COG1340    38 LKELAEK----------RDELNAQVKELREEAQELREkrdeLNEKVKELKEERD----ELNEKLNELREELDELRKELAE 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 770 SAKLRNEVNQLKDQLEREReiayglqeeasklrvgtgkdvKRQilesENAQLRQEKQRREMEKSSLLETKMILSRQNEEQ 849
Cdd:COG1340   104 LNKAGGSIDKLRKEIERLE---------------------WRQ----QTEVLSPEEEKELVEKIKELEKELEKAKKALEK 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 850 HKLIQSLMDQNHT--EEGPSNHEDENGSYRKVLWKHQKIKDLYRKGEQQR-EAEEMVNKLISLNQHPEVQHISFLELESF 926
Cdd:COG1340   159 NEKLKELRAELKElrKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRkEADELHKEIVEAQEKADELHEEIIELQKE 238

                         250       260
                  ....*....|....*....|.
gi 2077860356 927 KKQISDYLHTVEKNIQKIKRN 947
Cdd:COG1340   239 LRELRKELKKLRKKQRALKRE 259
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
666-857 1.96e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 42.06  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 666 EQRLQEEKLDHVKIQVEakkKLELKLEEVETWKKQVSALWNCKSDHEALNTKLSKCVEKGKKLKEINEKVSNSRDQLSTK 745
Cdd:COG4717    48 LERLEKEADELFKPQGR---KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 746 VF---------ELKLQLNRELETAETLKNERKDSAKLRNEVNQLKDQLEREREIAYGLQEEASKLRVGTGKDVKRQI--L 814
Cdd:COG4717   125 LQllplyqeleALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELeeL 204

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2077860356 815 ESENAQLRQEKQRREMEKSSL------LETKMILSRQNEEQHKLIQSLM 857
Cdd:COG4717   205 QQRLAELEEELEEAQEELEELeeeleqLENELEAAALEERLKEARLLLL 253
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
 625-848 2.25e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 42.08  E-value: 2.25e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  625 KEMKTVQNVLKDVQTQLTTMK----------HKSEKFEKNMTG----------SVERSKKAEQRLQEEKLDHVKIQVEAK 684
Cdd:pfam01576  798 KQLKKLQAQMKDLQRELEEARasrdeilaqsKESEKKLKNLEAellqlqedlaASERARRQAQQERDELADEIASGASGK 877

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  685 KKLELKLEEVETWKKQV-SALWNCKSDHEALNTKLSKCVEKGKKL-------KEINEKVSNSRDQLSTKVFELKLQLnRE 756
Cdd:pfam01576  878 SALQDEKRRLEARIAQLeEELEEEQSNTELLNDRLRKSTLQVEQLttelaaeRSTSQKSESARQQLERQNKELKAKL-QE 956

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  757 LETaeTLKNERKDS-AKLRNEVNQLKDQLERE-REiayglQEEASKLRVGTGKDVKRQILESENAQLRQEKQRREMEKSS 834
Cdd:pfam01576  957 MEG--TVKSKFKSSiAALEAKIAQLEEQLEQEsRE-----RQAANKLVRRTEKKLKEVLLQVEDERRHADQYKDQAEKGN 1029

                          250
                   ....*....|....
gi 2077860356  835 LLETKmiLSRQNEE 848
Cdd:pfam01576 1030 SRMKQ--LKRQLEE 1041
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
623-859 2.93e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 41.59  E-value: 2.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 623 VRKEMKTVQNVLKDVQTQLTTMKHKSEKFEK--NMTGSVERSKKAEQRLQEEKLDHVKiqvEAKKKLELKLEEVETWKKQ 700
Cdd:PRK03918  464 IEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELE---KKAEEYEKLKEKLIKLKGE 540

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 701 VSALwncKSDHEALNTKLSKCVEKGKKLKEINEKVSNSRDQLSTKVFELKLQLNRELETAE-------TLKNERKDSAKL 773
Cdd:PRK03918  541 IKSL---KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEpfyneylELKDAEKELERE 617

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 774 RNEVNQLKDQLEREREIAYGLQEEASKLRvGTGKDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLI 853
Cdd:PRK03918  618 EKELKKLEEELDKAFEELAETEKRLEELR-KELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696


                  ....*.
gi 2077860356 854 QSLMDQ 859
Cdd:PRK03918  697 EKLKEE 702
ADIP pfam11559
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ...
 715-835 3.36e-03

Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.


Pssm-ID: 463295 [Multi-domain]  Cd Length: 151  Bit Score: 39.22  E-value: 3.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356 715 NTKLSKCVEKGKKLKEINEKVSNSRDQLSTKVFELKLQLNRELET----AETLKNERKDSAKLRNEVNQLKDQLER-ERE 789
Cdd:pfam11559   9 QTLLSRGFLRSGLLFDTAEGVEENIARIINVIYELLQQRDRDLEFreslNETIRTLEAEIERLQSKIERLKTQLEDlERE 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2077860356 790 IAYGLQEEAS---KLRVGTGK------DVKRQ--ILESENAQLRQEKQRREMEKSSL 835
Cdd:pfam11559  89 LALLQAKERQlekKLKTLEQKlknekeELQRLknALQQIKTQFAHEVKKRDREIEKL 145
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
 644-948 5.13e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 40.73  E-value: 5.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  644 MKHKSEKFEKNMTGSVERSKKAEQRLQEEKLDHVKIQVEAKKKLELKLEEVETWKKQVSALWNCKSDHEAlntklskcve 723
Cdd:pfam02463  167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE---------- 236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  724 kgKKLKEINEKVSNSRDQLSTKVFELKlqlnRELETAETLKNERKDSAKLRNEVNQLKDQLEREREIaygLQEEASKLRV 803
Cdd:pfam02463  237 --ERIDLLQELLRDEQEEIESSKQEIE----KEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEE---LKSELLKLER 307

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  804 GTGKDVKRQILESENAQLRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEEgpSNHEDENGSYRKVLWKH 883
Cdd:pfam02463  308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL--EQLEEELLAKKKLESER 385

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2077860356  884 QKiKDLYRKGEQQREAEEMVNKLISLNQHPEVQhisFLELESFKKQISDYLHTVEKNIQKIKRND 948
Cdd:pfam02463  386 LS-SAAKLKEEELELKSEEEKEAQLLLELARQL---EDLLKEEKKEELEILEEEEESIELKQGKL 446
PTZ00121 PTZ00121
MAEBL; Provisional
 645-902 9.56e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 9.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  645 KHKSEKFEKnmtgsVERSKKAEQ-RLQEE--KLDHVKIQVEAKKKLELKLEEVETWKKQVSAL----WNCKSDHEALNTK 717
Cdd:PTZ00121  1277 ARKADELKK-----AEEKKKADEaKKAEEkkKADEAKKKAEEAKKADEAKKKAEEAKKKADAAkkkaEEAKKAAEAAKAE 1351

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  718 LSKCVEKGKKLKEINEKVSNSRDQLSTKVFELKLQLnRELETAETLKNERKDSAKLRNEVNqlkdQLEREREIAYGLQEE 797
Cdd:PTZ00121  1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA-EEKKKADEAKKKAEEDKKKADELK----KAAAAKKKADEAKKK 1426

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2077860356  798 ASKLRvgTGKDVKRQILESENAQlRQEKQRREMEKSSLLETKMILSRQNEEQHKLIQSLMDQNHTEEGPSNHEDENGSYR 877
Cdd:PTZ00121  1427 AEEKK--KADEAKKKAEEAKKAD-EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAK 1503

                          250       260
                   ....*....|....*....|....*
gi 2077860356  878 KVLWKHQKIKDLyRKGEQQREAEEM 902
Cdd:PTZ00121  1504 KAAEAKKKADEA-KKAEEAKKADEA 1527
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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