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Conserved domains on  [gi|2173616196|ref|NP_001386288|]
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cip1-interacting zinc finger protein isoform 3 [Rattus norvegicus]

Protein Classification

ZnF_U1 and zf-C2H2_jaz domain-containing protein( domain architecture ID 10648578)

protein containing domains PHA03247, ZnF_U1, and zf-C2H2_jaz

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 2-306 2.85e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 2.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196    2 PPATYDSASLTMPTAALGNLRAYNVTAPNLAAPSLTPPQMVTPNlqqffPQATRQSLLGP------------PPVGIPIN 69
Cdd:PHA03247  2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-----RPARPPTTAGPpapappaapaagPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196   70 PSQHNHSGRNSQKQPRTPS-------STTPNHKDSSSQTVPLDDREDPTEGSEEATELQMDTAEDQDSLVFPDG-LASEP 141
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPAdppaavlAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGdVRRRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  142 QVHEPEPEPFEALEPPAKRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDQLPEPPEALVVPRIQPQVlQIQTLS 221
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP-QPPLAP 2945

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  222 KLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPEQASVPAcatepqLLSNAAEVGRDpEETL 301
Cdd:PHA03247  2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR------VSSWASSLALH-EETD 3018


                   ....*
gi 2173616196  302 PEPVS 306
Cdd:PHA03247  3019 PPPVS 3023
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 482-506 2.11e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


:

Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 41.77  E-value: 2.11e-05
                          10        20
                  ....*....|....*....|....*
gi 2173616196 482 FCTICNRYFKTPRKFVEHVKSQGHK 506
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 388-420 2.05e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 39.16  E-value: 2.05e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2173616196  388 QFFCYICKASCSSQQEFQDHMSEAQHQQRLGEM 420
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 596-629 4.60e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.31  E-value: 4.60e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2173616196  596 GYVCRICHKFYDSNSEFRlSHCKSLAHFENLQKY 629
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-306 2.85e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 2.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196    2 PPATYDSASLTMPTAALGNLRAYNVTAPNLAAPSLTPPQMVTPNlqqffPQATRQSLLGP------------PPVGIPIN 69
Cdd:PHA03247  2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-----RPARPPTTAGPpapappaapaagPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196   70 PSQHNHSGRNSQKQPRTPS-------STTPNHKDSSSQTVPLDDREDPTEGSEEATELQMDTAEDQDSLVFPDG-LASEP 141
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPAdppaavlAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGdVRRRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  142 QVHEPEPEPFEALEPPAKRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDQLPEPPEALVVPRIQPQVlQIQTLS 221
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP-QPPLAP 2945

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  222 KLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPEQASVPAcatepqLLSNAAEVGRDpEETL 301
Cdd:PHA03247  2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR------VSSWASSLALH-EETD 3018


                   ....*
gi 2173616196  302 PEPVS 306
Cdd:PHA03247  3019 PPPVS 3023
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 482-506 2.11e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 41.77  E-value: 2.11e-05
                          10        20
                  ....*....|....*....|....*
gi 2173616196 482 FCTICNRYFKTPRKFVEHVKSQGHK 506
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 388-420 2.05e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 39.16  E-value: 2.05e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2173616196  388 QFFCYICKASCSSQQEFQDHMSEAQHQQRLGEM 420
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
ftsN TIGR02223
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ...
 137-283 2.11e-04

cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]


Pssm-ID: 274041 [Multi-domain]  Cd Length: 298  Bit Score: 43.91  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 137 LASEPQVHEPEPEPFEALEPpakRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDQ----LPEPPEALVVPRIQP 212
Cdd:TIGR02223  75 LPPKPEERWSYIEELEAREV---LINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAekvlATAPSEQTVAVEARK 151

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2173616196 213 QVlqIQTLSKLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKT-QDQPQTWPQGSAPPPEQASVPACATE 283
Cdd:TIGR02223 152 QT--AEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTaETQSNSKPIETAPKADKADKTKPKPK 221
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 596-629 4.60e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.31  E-value: 4.60e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2173616196  596 GYVCRICHKFYDSNSEFRlSHCKSLAHFENLQKY 629
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 388-414 4.66e-03

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 34.84  E-value: 4.66e-03
                          10        20
                  ....*....|....*....|....*..
gi 2173616196 388 QFFCYICKASCSSQQEFQDHMSEAQHQ 414
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-306 2.85e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 2.85e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196    2 PPATYDSASLTMPTAALGNLRAYNVTAPNLAAPSLTPPQMVTPNlqqffPQATRQSLLGP------------PPVGIPIN 69
Cdd:PHA03247  2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-----RPARPPTTAGPpapappaapaagPPRRLTRP 2786

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196   70 PSQHNHSGRNSQKQPRTPS-------STTPNHKDSSSQTVPLDDREDPTEGSEEATELQMDTAEDQDSLVFPDG-LASEP 141
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPAdppaavlAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGdVRRRP 2866

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  142 QVHEPEPEPFEALEPPAKRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDQLPEPPEALVVPRIQPQVlQIQTLS 221
Cdd:PHA03247  2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP-QPPLAP 2945

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  222 KLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPEQASVPAcatepqLLSNAAEVGRDpEETL 301
Cdd:PHA03247  2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSR------VSSWASSLALH-EETD 3018


                   ....*
gi 2173616196  302 PEPVS 306
Cdd:PHA03247  3019 PPPVS 3023
PRK10927 PRK10927
cell division protein FtsN;
146-313 1.01e-05

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 48.14  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 146 PEPEP----FEALEPPAKRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQT---QTPDQLPEPPEALVVPRIQPQVLQIQ 218
Cdd:PRK10927   77 PKPEErwryIKELESRQPGVRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQAdmrQQPTQLVEVPWNEQTPEQRQQTLQRQ 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 219 ----TLSKLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKTQDQPQTwpqgsaPPPEQASVPACATEPQLLSNAAEVG 294
Cdd:PRK10927  157 rqaqQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQ------PYQDLLQTPAHTTAQSKPQQAAPVT 230

                         170
                  ....*....|....*....
gi 2173616196 295 RDPEEtlPEPVSAQSSEDR 313
Cdd:PRK10927  231 RAADA--PKPTAEKKDERR 247
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 482-506 2.11e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 41.77  E-value: 2.11e-05
                          10        20
                  ....*....|....*....|....*
gi 2173616196 482 FCTICNRYFKTPRKFVEHVKSQGHK 506
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 137-311 1.28e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.24  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 137 LASEPQVHEPEPE-PFEALEPPAkrlrsseestEKGPTGQPQARVQPQTQMTAPKQ-TQTPDQLPEPPEALVVPRI---Q 211
Cdd:PRK07994  357 LAFHPAAPLPEPEvPPQSAAPAA----------SAQATAAPTAAVAPPQAPAVPPPpASAPQQAPAVPLPETTSQLlaaR 426

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 212 PQVLQIQTLSKLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPEQASVPacATEPQLLSNAA 291
Cdd:PRK07994  427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEP--VATPKALKKAL 504

                         170       180
                  ....*....|....*....|
gi 2173616196 292 EVGRDPEetLPEPVSAQSSE 311
Cdd:PRK07994  505 EHEKTPE--LAAKLAAEAIE 522
PHA03247 PHA03247
large tegument protein UL36; Provisional
 16-387 1.39e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 1.39e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196   16 AALGNLRAYNVTAPNLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGIPINPSQHNHSGRNSQKQPRTPSSTTPnhk 95
Cdd:PHA03247  2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP--- 2766

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196   96 dsSSQTVPlddrEDPTEGSEEATElqmdtaedqdslvfPDGLASEPQVHEPEPEPFEALEPPAKRLRSSEESTekgPTGQ 175
Cdd:PHA03247  2767 --PAPAPP----AAPAAGPPRRLT--------------RPAVASLSESRESLPSPWDPADPPAAVLAPAAALP---PAAS 2823

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  176 PQARVQPQT--QMTAPKQTQTPDQLPEPPEALVVPRiqpqvlqiqtlSKLQKQAQTQTSPEHLA-PQQNQVSTQAQPQEQ 252
Cdd:PHA03247  2824 PAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPG-----------GDVRRRPPSRSPAAKPAaPARPPVRRLARPAVS 2892

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  253 TSekTQDQPQtwPQGSAPPPEQASVPACATEPQllsnaaevgrdPEETLPEPVSAQSSEDRSQEPSAGGLDVGECEKRAG 332
Cdd:PHA03247  2893 RS--TESFAL--PPDQPERPPQPQAPPPPQPQP-----------QPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2173616196  333 EVLGMW-GAGSSLKVTILQSSNSRAFNTTPLTSGPRPGDSASATPALASTPSKQSL 387
Cdd:PHA03247  2958 AVPQPWlGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLAL 3013
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 388-420 2.05e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 39.16  E-value: 2.05e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2173616196  388 QFFCYICKASCSSQQEFQDHMSEAQHQQRLGEM 420
Cdd:smart00451   3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
ftsN TIGR02223
cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a ...
 137-283 2.11e-04

cell division protein FtsN; FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis. [Cellular processes, Cell division]


Pssm-ID: 274041 [Multi-domain]  Cd Length: 298  Bit Score: 43.91  E-value: 2.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 137 LASEPQVHEPEPEPFEALEPpakRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDQ----LPEPPEALVVPRIQP 212
Cdd:TIGR02223  75 LPPKPEERWSYIEELEAREV---LINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAekvlATAPSEQTVAVEARK 151

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2173616196 213 QVlqIQTLSKLQKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKT-QDQPQTWPQGSAPPPEQASVPACATE 283
Cdd:TIGR02223 152 QT--AEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTaETQSNSKPIETAPKADKADKTKPKPK 221
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 194-318 2.29e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 44.69  E-value: 2.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  194 TPDQLPEP-PEALVVPRIQPQVLQiQTLSKLQKQAQTQTSpehLAPQQNQVSTQaQPQEQTSEKTQDQPQTWPQGSAPPP 272
Cdd:PRK10263   746 TPIVEPVQqPQQPVAPQQQYQQPQ-QPVAPQPQYQQPQQP---VAPQPQYQQPQ-QPVAPQPQYQQPQQPVAPQPQYQQP 820

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2173616196  273 EQASVPacatEPQLLSNAAEVGRDPEETLPEPVSAQSSEDRS-QEPS 318
Cdd:PRK10263   821 QQPVAP----QPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPlHKPT 863
PRK12757 PRK12757
cell division protein FtsN; Provisional
 172-272 3.44e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 43.11  E-value: 3.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 172 PTGQPQARVQPQ---------TQMTAPKQtQTPDQLPEPPEALVVPRIQPQVLQIQTLSKLQKQAQTQTSPEHLAPQQnq 242
Cdd:PRK12757   68 PSAGGEVNSPTQltdeqrqllEQMQADMR-QQPTQLSEVPYNEQTPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPR-- 144

                          90       100       110
                  ....*....|....*....|....*....|
gi 2173616196 243 vsTQAQPQEQTSEKTQDQPQTWPQGSAPPP 272
Cdd:PRK12757  145 --QTTAPVQPQTPAPVRTQPAAPVTQAVEA 172
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 175-278 5.31e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.54  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  175 QPQARVQPQTQMTAPKQTQTPDQLPEPPEALVVPRIQPQvlqiqtlsklQKQAQTQTSPEHLAPQQNQVSTQ--AQPQEQ 252
Cdd:PRK10263   767 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ----------QPQQPVAPQPQYQQPQQPVAPQPqyQQPQQP 836

                           90       100
                   ....*....|....*....|....*....
gi 2173616196  253 TSEKTQD---QPQTWPQGSAPPPEQASVP 278
Cdd:PRK10263   837 VAPQPQDtllHPLLMRNGDSRPLHKPTTP 865
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 70-270 8.22e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 42.79  E-value: 8.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  70 PSQHNHSGRNSQKQPRTPSSTTPNHKDSSSQTVP-----LDDREDPTEGSEEATELQMDTAEDQDSlvfpDGLASEPQVH 144
Cdd:PRK14949  569 DDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAaaslaDDDILDAVLAARDSLLSDLDALSPKEG----DGKKSSADRK 644

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 145 E--------PEPEPFEALEPPAKRLRSSEESTEKGPT----GQPQARVQPQTQMTAPKQTQTPDQLP--EPPEALVVPRI 210
Cdd:PRK14949  645 PktppsrapPASLSKPASSPDASQTSASFDLDPDFELathqSVPEAALASGSAPAPPPVPDPYDRPPweEAPEVASANDG 724

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 211 QPQVLQIQTLSKLQKQAQTQTSPEHLAPQQnQVSTQAQPQEQTSEKTQDQPQTWPQGSAP 270
Cdd:PRK14949  725 PNNAAEGNLSESVEDASNSELQAVEQQATH-QPQVQAEAQSPASTTALTQTSSEVQDTEL 783
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 141-273 1.88e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.61  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  141 PQVHEPEPEPFEALE--PPAKRLRSSEESTEKgPTGQPQARVQPQTQMTAPKQTQTPDQLPEPPEALVVPRIQPQVLQIQ 218
Cdd:PRK10263   364 PGPQTGEPVIAPAPEgyPQQSQYAQPAVQYNE-PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPV 442

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2173616196  219 TLSKLQKQAQTQtspeHLAPQQNQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPE 273
Cdd:PRK10263   443 AGNAWQAEEQQS----TFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE 493
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 125-315 3.66e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 3.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  125 AEDQDSLVFPDGLASEPQVHEPEP--------EPFEALEPPAKRLRSSEESTEkgPTGQPQARVQPQTQMTAPKQTQTPD 196
Cdd:PRK10263   286 AADPDDVLFSGNRATQPEYDEYDPllngapitEPVAVAAAATTATQSWAAPVE--PVTQTPPVASVDVPPAQPTVAWQPV 363

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  197 QLPEPPEALVVPRI-----QPQVLQIQTLSKLQKQAQTQTSPEHLAPQQNQVStQAQPQEQTSEKTQDQPQTWPQGSAPP 271
Cdd:PRK10263   364 PGPQTGEPVIAPAPegypqQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPA-QQPYYAPAPEQPAQQPYYAPAPEQPV 442

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 2173616196  272 PEQASVPacatEPQLLSNAAEVGRDPEETLPEPVSAQSSEDRSQ 315
Cdd:PRK10263   443 AGNAWQA----EEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQ 482
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 596-629 4.60e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 35.31  E-value: 4.60e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2173616196  596 GYVCRICHKFYDSNSEFRlSHCKSLAHFENLQKY 629
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 388-414 4.66e-03

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 34.84  E-value: 4.66e-03
                          10        20
                  ....*....|....*....|....*..
gi 2173616196 388 QFFCYICKASCSSQQEFQDHMSEAQHQ 414
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 134-324 6.04e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 6.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 134 PDGLASEPQVHEPEPEPFEALEPPAKRLRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDQLPEPPEALVVPRIQPQ 213
Cdd:PRK07764  629 PAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196 214 vlqiqtlsklqKQAQTQTSPEHLAPQQNQVSTQAQPQEQTSEKTQDQPQTWPQGSAPPPEQASVPACATEPQLLSNAAEV 293
Cdd:PRK07764  709 -----------PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2173616196 294 GRD-PEETLPEPVSAQSSEDRsQEPSAGGLDV 324
Cdd:PRK07764  778 PPSeEEEMAEDDAPSMDDEDR-RDAEEVAMEL 808
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 135-315 9.47e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 9.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  135 DGLASEPQVHEPEPEPFEALEP--PAKRLRSSEESTEKGPTGQPQA--RVQPQTQMTAPKQTQTPDQLPEPPEALVVPRI 210
Cdd:PRK10263   338 EPVTQTPPVASVDVPPAQPTVAwqPVPGPQTGEPVIAPAPEGYPQQsqYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQ 417

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173616196  211 QPQVLQiqtlSKLQKQAQTQTSPEHLAPQQNQvSTQAQPQEQT--SEKTQDQPQTWPQGSAPPP----EQASVPACATEP 284
Cdd:PRK10263   418 QPYYAP----APEQPAQQPYYAPAPEQPVAGN-AWQAEEQQSTfaPQSTYQTEQTYQQPAAQEPlyqqPQPVEQQPVVEP 492

                          170       180       190
                   ....*....|....*....|....*....|.
gi 2173616196  285 QLLSNAAEVGRDPEETLpEPVSAQSSEDRSQ 315
Cdd:PRK10263   493 EPVVEETKPARPPLYYF-EEVEEKRAREREQ 522
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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