|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02900 |
PLN02900 |
alanyl-tRNA synthetase |
6-961 |
0e+00 |
|
alanyl-tRNA synthetase
Pssm-ID: 215487 [Multi-domain] Cd Length: 936 Bit Score: 1195.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDL 85
Cdd:PLN02900 12 PGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 86 DDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAagLEADLECKQIWQNLgLDDTK 165
Cdd:PLN02900 92 DDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDY-LPEER 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 166 ILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLE 245
Cdd:PLN02900 169 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 246 RLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLR 325
Cdd:PLN02900 249 RLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLR 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 326 RILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDS-- 403
Cdd:PLN02900 329 RLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANgg 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 404 KTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQ--GKGAGGEDLIMlDIYAIEELRARGLEVT 481
Cdd:PLN02900 409 PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRaaHLKAGGGAIEL-AAEATSWLQKQGVAAT 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 482 DDSPKYNYHLDSSgsyvfentvATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVkvddsSEDKTEF 561
Cdd:PLN02900 488 DDFLKYDWLSDHE---------AVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLE-----GSGGAVV 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 562 TVKNAQVRGGYVLHIGTIY-GDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFT 639
Cdd:PLN02900 554 EVSDVQKAGGFVLHIGTVTeGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDhVDQKGSLVAFEKLRFDFS 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 640 AKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGvpvsellddpsgpaGSLtS 719
Cdd:PLN02900 634 HGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG--------------GVY-S 698
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 720 VEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKCLSvmeakvKAQTAPNKDVQREIADLG 799
Cdd:PLN02900 699 MELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELD------SALKVEGSDLEKKVASLK 772
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 800 EALATAVIPQWQKDELRETLKSL-KKVMDDLDRASKADVQK---RVLEKTKQFIDSnpNQPLVILEMESGASAKALNEAL 875
Cdd:PLN02900 773 SRVDAAVIPAAKKEEIRARVSALqKELRAAQKEAAALRAKLavaKATELASKALSA--GKSVLVARLDVGVDAAALKEAA 850
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 876 KLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCLQEALQLA 955
Cdd:PLN02900 851 EKVIAKLGDPAAVVLSSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKA 930
|
....*.
gi 109148542 956 TSFAQL 961
Cdd:PLN02900 931 RAFAVA 936
|
|
| AlaS |
COG0013 |
Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Alanyl-tRNA ... |
5-963 |
0e+00 |
|
Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Alanyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439784 [Multi-domain] Cd Length: 880 Bit Score: 1019.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 5 LTASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPmaklsRAANTQKCIRAGGKHND 84
Cdd:COG0013 2 MTSAEIRQKFLDFFESKGHTIVPSSSLVPKNDPTLLFTNAGMVQFKPYFLGQEKPPYP-----RATTSQKCVRTGGKHND 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 85 LDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEaaglEAdlecKQIWQNL-GLDD 163
Cdd:COG0013 77 LENVGYTARHHTFFEMLGNFSFGDYFKEEAIAWAWELLTEVLGLPKERLWVTVYEDDD----EA----YDIWKKEiGVPE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 164 TKILPGNMKDNFWEMGDTGPCGPCSEIHYDR----IGGRDAahLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSID 239
Cdd:COG0013 149 ERIIRLGKKDNFWEMGDTGPCGPCSEIFYDRgpeyGGGPPG--SPGEDGDRYIEIWNLVFMQFNRDEDGTLTPLPKKNID 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 240 TGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGArpytgKVGAEDADgiDMAYRVLADHARTITVALADGGRPDNTG 319
Cdd:COG0013 227 TGMGLERIAAVLQGVHSNYETDLFRPLIEAAAELTGV-----KYGADEED--DVSLRVIADHIRAVAFLIADGVLPSNEG 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 320 RGYVLRRILRRAVRYAHeKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQS 399
Cdd:COG0013 300 RGYVLRRILRRAVRHGR-LLGIKEPFLYKLVPVVVEEMGDAYPELKEKQELIEKVLKAEEERFLRTLERGLKLLDEAIAK 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 400 LGD--SKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEE----RKLAQLKSQGKGAGGEDLImldiyaIEEL 473
Cdd:COG0013 379 LKAagGKVLSGEDAFKLYDTYGFPLDLTEEIARERGLTVDEEGFEAAmeeqRERARAAAKFSGDAAVDGV------WREL 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 474 RARGLEVtddspkynyhlDSSGsYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvdd 553
Cdd:COG0013 453 LEEGGPT-----------EFVG-YDTLEAEAKVLALVKDGELVDSAKAGEEVEVVLDRTPFYAESGGQVGDTGTIEG--- 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 554 sseDKTEFTVKNAQ-VRGGYVLHIGTI-YGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVA 630
Cdd:COG0013 518 ---DGGVFEVTDTQkPPGGLIVHIGKVeEGELKVGDTVTAQVDAERRRAIARNHSATHLLHAALREVLGEhVTQAGSLVA 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 631 PDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAiQGLRAVFDETYPDPVRVVSIGvpvselldDp 710
Cdd:COG0013 595 PDRLRFDFSHFEALTPEELAEIEDLVNEKIRENLPVETREMPLDEAKA-LGAMALFGEKYGDEVRVVSIG--------D- 664
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 711 sgpagslTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRK--------AESLKKCLSVMEAKVK 782
Cdd:COG0013 665 -------FSRELCGGTHVSRTGDIGLFKIVSESSVAAGVRRIEAVTGEAALEYLREqeallkelAELLKAPPEELPERVE 737
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 783 AQTAPNKDVQREIADLGEALATAvipqwQKDELRETLKSLKKVmddldraskadvqkrvlektkqfidsnpnqPLVILEM 862
Cdd:COG0013 738 ALLEELKELEKELEQLKAKLASA-----AADDLLAQAEEIGGV------------------------------KVLAARV 782
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 863 EsGASAKALNEALKLFKMHSPQTSAMLFTVDNeaGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATG 942
Cdd:COG0013 783 E-GVDAKDLRDLADDLKDKLGSGVVVLASVAD--GKVSLVAGVTKDLVKKGLKAGDLVKEVAKIVGGGGGGRPDMAQAGG 859
|
970 980
....*....|....*....|.
gi 109148542 943 KNVGCLQEALQLATSFAQLRL 963
Cdd:COG0013 860 KDPSKLDEALAAVKEWLAEKL 880
|
|
| tRNA-synt_2c |
pfam01411 |
tRNA synthetases class II (A); Other tRNA synthetase sub-families are too dissimilar to be ... |
9-597 |
0e+00 |
|
tRNA synthetases class II (A); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only alanyl-tRNA synthetases.
Pssm-ID: 279719 [Multi-domain] Cd Length: 548 Bit Score: 841.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 9 EIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDpshpMAKLSRAANTQKCIRAGgkhnDLDDV 88
Cdd:pfam01411 1 EIRQTFLDFFEKKGHTRVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGVA----KPPYNRATNSQKCIRAG----DLENV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 89 GKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEaagleadlECKQIWQNL-GLDDTKIL 167
Cdd:pfam01411 73 GRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWELLTKELGLPPERLYVTVFEWDD--------EAGPIWEKIvGGPEERIL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 168 PGNMKDNFWEMGDTGPCGPCSEIHYDR---IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGL 244
Cdd:pfam01411 145 RFGDKDNFWEMGDTGPCGPCSEIDYDRgeeIGGWDSGGTPTADDDRFLEIWNLVFMQFNRENDGTLKPLPKKSIDTGMGL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTgkvgaedADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVL 324
Cdd:pfam01411 225 ERLVAVLQDVRSNYDTDVFIPVIELIEEISGARYYT-------VDETDEAYRVIADHTRALTFALADGVVPSNEGRGYVL 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 325 RRILRRAVRYAHeKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGD-S 403
Cdd:pfam01411 298 RRILRRAVRHAK-KLGLKEPFLYDLVPTVVEVLGDAYPELKEDEDFIQEILELEEERFAKTLERGLRLLERLIAKLKKgK 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 404 KTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQGKGAGGEDliMLDIYAIEELRArglevTDD 483
Cdd:pfam01411 377 KTLPGEDAFKLYDTYGFPVDLTKEIAEERGLKVDMPGFEYAMVEQRERSKQAVKEKGE--KLDVSALKELPA-----TTE 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 484 SPKYNYHLDSsgsyvfentvATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvddsseDKTEFTV 563
Cdd:pfam01411 450 FLGYDDLESE----------AKILALPKDGEFVAEVLAGQEGGVILDRTPFYAESGGQIGDTGYIIG------DGGEFRV 513
|
570 580 590
....*....|....*....|....*....|....*
gi 109148542 564 KNAQVRGGYVLHIGTI-YGDLKVGDQVWLFIDEPR 597
Cdd:pfam01411 514 TDVQKYGGVVVHKGKLeSGKLKVGDKVIAVIDEDR 548
|
|
| alaS |
TIGR00344 |
alanine--tRNA ligase; The model describes alanine--tRNA ligase. This enzyme catalyzes the ... |
9-942 |
0e+00 |
|
alanine--tRNA ligase; The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273026 [Multi-domain] Cd Length: 845 Bit Score: 820.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 9 EIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPmaklsRAANTQKCIRAggkhNDLDDV 88
Cdd:TIGR00344 1 EIRQTFLDFFKEKGHQVIPSAPLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSN-----RLTNAQPCIRL----NDLENV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 89 GKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLeadleckqIWQNLGLDDTKILP 168
Cdd:TIGR00344 72 GRTARHHTLFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLDKERLYVTVYEDDEEAYK--------IWEKIGIPADRIIK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 169 GNMKDNFWEMGDtGPCGPCSEIHYDRIGGRDAAHLVnqDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLERLV 248
Cdd:TIGR00344 144 CDAKDNFWDMGD-GPCGPCTEIYYDFVGGKPGEPLE--ENDRYLEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 249 SVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGID--MAYRVLADHARTITVALADGGRPDNTGRGYVLRR 326
Cdd:TIGR00344 221 AVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEdlRSLRVIADHTRAIAFMLADGVVPSNEGRGYVLRR 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 327 ILRRAVRYAHeKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGdSKTI 406
Cdd:TIGR00344 301 LIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKTG-KKEL 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 407 PGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQGKGAGGEDLIMLdiyaieelrargLEVTDDSPK 486
Cdd:TIGR00344 379 DGEDAFKLYDTYGFPVELTKEIAEERGLTVDMPGFEALMAEQRERSKQNSQFQEQEIAL------------VNVYPATEF 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 487 YNYH-LDSSgsyvfentvATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvddsseDKTEFTVKN 565
Cdd:TIGR00344 447 LGYDdLEFE---------AKVIGLFDDGYLVEQALAGQSVYVILDQTPFYAESGGQIGDTGYLIA------NDGKFRVVD 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 566 AQVRGGYVLHIGTIY-GDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGA 643
Cdd:TIGR00344 512 VQKPNGVVFHFGEVEgGSLKVGDKVIAVIDEKRRFRIMRNHSATHLLHAALQKVLGNhVWQAGSLVSFKKLRFDFSHFRA 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 644 MSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAvFDETYP--DPVRVVSIGVpvsellddpsgpagslTSVE 721
Cdd:TIGR00344 592 LTREELEEIEDLANEQILANIPIKVIFMDLDEAKRKGAFAL-FGEKYVpgEKVRVVSVGD----------------FSVE 654
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 722 FCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRK--------AESLKKCLSVMEAKVKAQTAPNKDVQR 793
Cdd:TIGR00344 655 LCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGEAAIEYLNEqedklkelADILKVTPNELPKKVERFFEEWKALQK 734
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 794 EIADLGEALATAVIpqwqkDELR---ETLKSLKKVMDDLDrASKADVQKRVLEKTKQfidsnpnqplvilemESGASAKA 870
Cdd:TIGR00344 735 ELESLKLKIADQKI-----DELKdkaETINGVKVLVEVVD-AKDMKSLKTMADRLKS---------------KLGSAIYV 793
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109148542 871 LnealklfkmhspqtsamlftVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATG 942
Cdd:TIGR00344 794 L--------------------ASFAEGKVKLVCGVSNDVLTKKIKAGELINQIAQVLGGKGGGRPDFAQGGG 845
|
|
| AlaRS_core |
cd00673 |
Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is ... |
7-254 |
5.71e-139 |
|
Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Pssm-ID: 238360 [Multi-domain] Cd Length: 232 Bit Score: 414.84 E-value: 5.71e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 7 ASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPmaklsRAANTQKCIRAGGKHNdld 86
Cdd:cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPAN-----RLVNSQKCIRAGDIDN--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 87 dVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDeaagleaDLECKQIWQNLGLDDTKI 166
Cdd:cd00673 73 -VGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGD-------DEEEAIWWWKIGLPGIRI 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 167 LPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLER 246
Cdd:cd00673 145 ERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLER 224
|
....*...
gi 109148542 247 LVSVLQNK 254
Cdd:cd00673 225 LVWVLQGV 232
|
|
| tRNA_SAD |
smart00863 |
Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active form of ... |
694-752 |
1.12e-11 |
|
Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Pssm-ID: 197931 [Multi-domain] Cd Length: 43 Bit Score: 60.09 E-value: 1.12e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 109148542 694 VRVVSIGVpvsellddpsgpagslTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRI 752
Cdd:smart00863 1 VRVVSIGD----------------FSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02900 |
PLN02900 |
alanyl-tRNA synthetase |
6-961 |
0e+00 |
|
alanyl-tRNA synthetase
Pssm-ID: 215487 [Multi-domain] Cd Length: 936 Bit Score: 1195.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDL 85
Cdd:PLN02900 12 PGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHNDL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 86 DDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAagLEADLECKQIWQNLgLDDTK 165
Cdd:PLN02900 92 DDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDY-LPEER 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 166 ILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLE 245
Cdd:PLN02900 169 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAKHVDTGMGLE 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 246 RLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLR 325
Cdd:PLN02900 249 RLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVPSNEGRGYVLR 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 326 RILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDS-- 403
Cdd:PLN02900 329 RLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANgg 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 404 KTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQ--GKGAGGEDLIMlDIYAIEELRARGLEVT 481
Cdd:PLN02900 409 PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRaaHLKAGGGAIEL-AAEATSWLQKQGVAAT 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 482 DDSPKYNYHLDSSgsyvfentvATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVkvddsSEDKTEF 561
Cdd:PLN02900 488 DDFLKYDWLSDHE---------AVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLE-----GSGGAVV 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 562 TVKNAQVRGGYVLHIGTIY-GDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFT 639
Cdd:PLN02900 554 EVSDVQKAGGFVLHIGTVTeGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDhVDQKGSLVAFEKLRFDFS 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 640 AKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGvpvsellddpsgpaGSLtS 719
Cdd:PLN02900 634 HGKPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG--------------GVY-S 698
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 720 VEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKCLSvmeakvKAQTAPNKDVQREIADLG 799
Cdd:PLN02900 699 MELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELD------SALKVEGSDLEKKVASLK 772
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 800 EALATAVIPQWQKDELRETLKSL-KKVMDDLDRASKADVQK---RVLEKTKQFIDSnpNQPLVILEMESGASAKALNEAL 875
Cdd:PLN02900 773 SRVDAAVIPAAKKEEIRARVSALqKELRAAQKEAAALRAKLavaKATELASKALSA--GKSVLVARLDVGVDAAALKEAA 850
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 876 KLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCLQEALQLA 955
Cdd:PLN02900 851 EKVIAKLGDPAAVVLSSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKA 930
|
....*.
gi 109148542 956 TSFAQL 961
Cdd:PLN02900 931 RAFAVA 936
|
|
| AlaS |
COG0013 |
Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Alanyl-tRNA ... |
5-963 |
0e+00 |
|
Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Alanyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439784 [Multi-domain] Cd Length: 880 Bit Score: 1019.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 5 LTASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPmaklsRAANTQKCIRAGGKHND 84
Cdd:COG0013 2 MTSAEIRQKFLDFFESKGHTIVPSSSLVPKNDPTLLFTNAGMVQFKPYFLGQEKPPYP-----RATTSQKCVRTGGKHND 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 85 LDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEaaglEAdlecKQIWQNL-GLDD 163
Cdd:COG0013 77 LENVGYTARHHTFFEMLGNFSFGDYFKEEAIAWAWELLTEVLGLPKERLWVTVYEDDD----EA----YDIWKKEiGVPE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 164 TKILPGNMKDNFWEMGDTGPCGPCSEIHYDR----IGGRDAahLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSID 239
Cdd:COG0013 149 ERIIRLGKKDNFWEMGDTGPCGPCSEIFYDRgpeyGGGPPG--SPGEDGDRYIEIWNLVFMQFNRDEDGTLTPLPKKNID 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 240 TGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGArpytgKVGAEDADgiDMAYRVLADHARTITVALADGGRPDNTG 319
Cdd:COG0013 227 TGMGLERIAAVLQGVHSNYETDLFRPLIEAAAELTGV-----KYGADEED--DVSLRVIADHIRAVAFLIADGVLPSNEG 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 320 RGYVLRRILRRAVRYAHeKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQS 399
Cdd:COG0013 300 RGYVLRRILRRAVRHGR-LLGIKEPFLYKLVPVVVEEMGDAYPELKEKQELIEKVLKAEEERFLRTLERGLKLLDEAIAK 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 400 LGD--SKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEE----RKLAQLKSQGKGAGGEDLImldiyaIEEL 473
Cdd:COG0013 379 LKAagGKVLSGEDAFKLYDTYGFPLDLTEEIARERGLTVDEEGFEAAmeeqRERARAAAKFSGDAAVDGV------WREL 452
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 474 RARGLEVtddspkynyhlDSSGsYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvdd 553
Cdd:COG0013 453 LEEGGPT-----------EFVG-YDTLEAEAKVLALVKDGELVDSAKAGEEVEVVLDRTPFYAESGGQVGDTGTIEG--- 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 554 sseDKTEFTVKNAQ-VRGGYVLHIGTI-YGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVA 630
Cdd:COG0013 518 ---DGGVFEVTDTQkPPGGLIVHIGKVeEGELKVGDTVTAQVDAERRRAIARNHSATHLLHAALREVLGEhVTQAGSLVA 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 631 PDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAiQGLRAVFDETYPDPVRVVSIGvpvselldDp 710
Cdd:COG0013 595 PDRLRFDFSHFEALTPEELAEIEDLVNEKIRENLPVETREMPLDEAKA-LGAMALFGEKYGDEVRVVSIG--------D- 664
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 711 sgpagslTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRK--------AESLKKCLSVMEAKVK 782
Cdd:COG0013 665 -------FSRELCGGTHVSRTGDIGLFKIVSESSVAAGVRRIEAVTGEAALEYLREqeallkelAELLKAPPEELPERVE 737
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 783 AQTAPNKDVQREIADLGEALATAvipqwQKDELRETLKSLKKVmddldraskadvqkrvlektkqfidsnpnqPLVILEM 862
Cdd:COG0013 738 ALLEELKELEKELEQLKAKLASA-----AADDLLAQAEEIGGV------------------------------KVLAARV 782
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 863 EsGASAKALNEALKLFKMHSPQTSAMLFTVDNeaGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATG 942
Cdd:COG0013 783 E-GVDAKDLRDLADDLKDKLGSGVVVLASVAD--GKVSLVAGVTKDLVKKGLKAGDLVKEVAKIVGGGGGGRPDMAQAGG 859
|
970 980
....*....|....*....|.
gi 109148542 943 KNVGCLQEALQLATSFAQLRL 963
Cdd:COG0013 860 KDPSKLDEALAAVKEWLAEKL 880
|
|
| tRNA-synt_2c |
pfam01411 |
tRNA synthetases class II (A); Other tRNA synthetase sub-families are too dissimilar to be ... |
9-597 |
0e+00 |
|
tRNA synthetases class II (A); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only alanyl-tRNA synthetases.
Pssm-ID: 279719 [Multi-domain] Cd Length: 548 Bit Score: 841.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 9 EIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDpshpMAKLSRAANTQKCIRAGgkhnDLDDV 88
Cdd:pfam01411 1 EIRQTFLDFFEKKGHTRVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGVA----KPPYNRATNSQKCIRAG----DLENV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 89 GKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEaagleadlECKQIWQNL-GLDDTKIL 167
Cdd:pfam01411 73 GRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWELLTKELGLPPERLYVTVFEWDD--------EAGPIWEKIvGGPEERIL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 168 PGNMKDNFWEMGDTGPCGPCSEIHYDR---IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGL 244
Cdd:pfam01411 145 RFGDKDNFWEMGDTGPCGPCSEIDYDRgeeIGGWDSGGTPTADDDRFLEIWNLVFMQFNRENDGTLKPLPKKSIDTGMGL 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTgkvgaedADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVL 324
Cdd:pfam01411 225 ERLVAVLQDVRSNYDTDVFIPVIELIEEISGARYYT-------VDETDEAYRVIADHTRALTFALADGVVPSNEGRGYVL 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 325 RRILRRAVRYAHeKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGD-S 403
Cdd:pfam01411 298 RRILRRAVRHAK-KLGLKEPFLYDLVPTVVEVLGDAYPELKEDEDFIQEILELEEERFAKTLERGLRLLERLIAKLKKgK 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 404 KTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQGKGAGGEDliMLDIYAIEELRArglevTDD 483
Cdd:pfam01411 377 KTLPGEDAFKLYDTYGFPVDLTKEIAEERGLKVDMPGFEYAMVEQRERSKQAVKEKGE--KLDVSALKELPA-----TTE 449
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 484 SPKYNYHLDSsgsyvfentvATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvddsseDKTEFTV 563
Cdd:pfam01411 450 FLGYDDLESE----------AKILALPKDGEFVAEVLAGQEGGVILDRTPFYAESGGQIGDTGYIIG------DGGEFRV 513
|
570 580 590
....*....|....*....|....*....|....*
gi 109148542 564 KNAQVRGGYVLHIGTI-YGDLKVGDQVWLFIDEPR 597
Cdd:pfam01411 514 TDVQKYGGVVVHKGKLeSGKLKVGDKVIAVIDEDR 548
|
|
| alaS |
TIGR00344 |
alanine--tRNA ligase; The model describes alanine--tRNA ligase. This enzyme catalyzes the ... |
9-942 |
0e+00 |
|
alanine--tRNA ligase; The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273026 [Multi-domain] Cd Length: 845 Bit Score: 820.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 9 EIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPmaklsRAANTQKCIRAggkhNDLDDV 88
Cdd:TIGR00344 1 EIRQTFLDFFKEKGHQVIPSAPLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSN-----RLTNAQPCIRL----NDLENV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 89 GKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLeadleckqIWQNLGLDDTKILP 168
Cdd:TIGR00344 72 GRTARHHTLFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLDKERLYVTVYEDDEEAYK--------IWEKIGIPADRIIK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 169 GNMKDNFWEMGDtGPCGPCSEIHYDRIGGRDAAHLVnqDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLERLV 248
Cdd:TIGR00344 144 CDAKDNFWDMGD-GPCGPCTEIYYDFVGGKPGEPLE--ENDRYLEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLERFV 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 249 SVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGID--MAYRVLADHARTITVALADGGRPDNTGRGYVLRR 326
Cdd:TIGR00344 221 AVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEdlRSLRVIADHTRAIAFMLADGVVPSNEGRGYVLRR 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 327 ILRRAVRYAHeKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGdSKTI 406
Cdd:TIGR00344 301 LIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKTG-KKEL 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 407 PGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQGKGAGGEDLIMLdiyaieelrargLEVTDDSPK 486
Cdd:TIGR00344 379 DGEDAFKLYDTYGFPVELTKEIAEERGLTVDMPGFEALMAEQRERSKQNSQFQEQEIAL------------VNVYPATEF 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 487 YNYH-LDSSgsyvfentvATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvddsseDKTEFTVKN 565
Cdd:TIGR00344 447 LGYDdLEFE---------AKVIGLFDDGYLVEQALAGQSVYVILDQTPFYAESGGQIGDTGYLIA------NDGKFRVVD 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 566 AQVRGGYVLHIGTIY-GDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGE-ADQKGSLVAPDRLRFDFTAKGA 643
Cdd:TIGR00344 512 VQKPNGVVFHFGEVEgGSLKVGDKVIAVIDEKRRFRIMRNHSATHLLHAALQKVLGNhVWQAGSLVSFKKLRFDFSHFRA 591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 644 MSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAvFDETYP--DPVRVVSIGVpvsellddpsgpagslTSVE 721
Cdd:TIGR00344 592 LTREELEEIEDLANEQILANIPIKVIFMDLDEAKRKGAFAL-FGEKYVpgEKVRVVSVGD----------------FSVE 654
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 722 FCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRK--------AESLKKCLSVMEAKVKAQTAPNKDVQR 793
Cdd:TIGR00344 655 LCGGTHVRNTGEIGLFKIVKESGIAAGVRRIEAVTGEAAIEYLNEqedklkelADILKVTPNELPKKVERFFEEWKALQK 734
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 794 EIADLGEALATAVIpqwqkDELR---ETLKSLKKVMDDLDrASKADVQKRVLEKTKQfidsnpnqplvilemESGASAKA 870
Cdd:TIGR00344 735 ELESLKLKIADQKI-----DELKdkaETINGVKVLVEVVD-AKDMKSLKTMADRLKS---------------KLGSAIYV 793
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109148542 871 LnealklfkmhspqtsamlftVDNEAGKITCLCQVPQNAANRGLKASEWVQQVSGLMDGKGGGKDVSAQATG 942
Cdd:TIGR00344 794 L--------------------ASFAEGKVKLVCGVSNDVLTKKIKAGELINQIAQVLGGKGGGRPDFAQGGG 845
|
|
| PRK01584 |
PRK01584 |
alanyl-tRNA synthetase; Provisional |
5-755 |
2.85e-150 |
|
alanyl-tRNA synthetase; Provisional
Pssm-ID: 234962 [Multi-domain] Cd Length: 594 Bit Score: 458.08 E-value: 2.85e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 5 LTASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHpmaklSRAANTQKCIRAGgkhnD 84
Cdd:PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSG-----TRLVDVQKCLRTG----D 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 85 LDDVGkDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE--FGIPIERLYVTYFGGDEAAglEADLECKQIWQNLGLD 162
Cdd:PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPdyLNIPKDKLYVTVFEGDEEI--PRDEETASVWESLGIP 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 163 DTKILPGNMKDNFW-EMGDTGPCGPCSEIHYDRigGRDAAHlvNQDDPNV-----LEIWNLVFIQYNREADGILKPLPKK 236
Cdd:PRK01584 149 KDRIFYLSREHNWWgPVGETGPCGPDTEIFVDT--GKPKCS--VNCRPTCscgkyFEIWNNVFMQYNKDEDGNYEELKRK 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 237 SIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARpytgkvgAEDADGIDMAYRVLADHARTITVALAD--GGR 314
Cdd:PRK01584 225 CVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKI-------YGQNEEDDRSIRIIADHIRAACFILGDpfVVL 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 315 PDNTGRGYVLRRILRRAVRYAhEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILD 394
Cdd:PRK01584 298 PSNVGQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFI 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 395 RKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQgKGAggedlimldiyaieelr 474
Cdd:PRK01584 377 KLIPNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSK-KGA----------------- 438
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 475 arglevtddspkynyhldssgsyvfentvatvmalrrEKMFveevstgqecgvvldktcfyaeQGGqiydegylvkVDDS 554
Cdd:PRK01584 439 -------------------------------------DKVF----------------------KGG----------LADH 449
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 555 SEDKTEFtvknaqvrggyvlhigtiygdlkvgdqvwlfideprrrpimsnHTATHILNFALRSVLGE-ADQKGSLVAPDR 633
Cdd:PRK01584 450 SYETTKL-------------------------------------------HTATHLLHKALRLVLGDhVRQKGSNITAER 486
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 634 LRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIqGLRAVFDETYPDPVRVVSIGVpvsellddpsgp 713
Cdd:PRK01584 487 LRFDFSHPEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEIDG------------ 553
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 109148542 714 agslTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAV 755
Cdd:PRK01584 554 ----FSKEVCGGPHVENTGELGTFKIQKEQSSSSGVRRIRAI 591
|
|
| AlaRS_core |
cd00673 |
Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is ... |
7-254 |
5.71e-139 |
|
Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Pssm-ID: 238360 [Multi-domain] Cd Length: 232 Bit Score: 414.84 E-value: 5.71e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 7 ASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPmaklsRAANTQKCIRAGGKHNdld 86
Cdd:cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPAN-----RLVNSQKCIRAGDIDN--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 87 dVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDeaagleaDLECKQIWQNLGLDDTKI 166
Cdd:cd00673 73 -VGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGD-------DEEEAIWWWKIGLPGIRI 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 167 LPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLER 246
Cdd:cd00673 145 ERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLER 224
|
....*...
gi 109148542 247 LVSVLQNK 254
Cdd:cd00673 225 LVWVLQGV 232
|
|
| AlaX |
COG2872 |
Ser-tRNA(Ala) deacylase AlaX (editing enzyme) [Translation, ribosomal structure and biogenesis] ... |
489-753 |
5.78e-33 |
|
Ser-tRNA(Ala) deacylase AlaX (editing enzyme) [Translation, ribosomal structure and biogenesis];
Pssm-ID: 442119 [Multi-domain] Cd Length: 238 Bit Score: 127.62 E-value: 5.78e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 489 YHLDSsgsYVFENTvATVmalrrekmfveeVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKvddsseDKTEFTVKNAQV 568
Cdd:COG2872 6 YLEDS---YLKEFE-ATV------------TAVTEEGGVVLDRTAFYPTGGGQPGDTGTLVW------DGKEIRVVDVRK 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 569 RGGYVLHIGTIYGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGeADQKGSLVAPDRLRFDFtAKGAMSTQQ 648
Cdd:COG2872 64 EDGEIVHVLEGAPLPEVGDEVTGEIDWERRYRHMRLHTALHLLSAVVYREYG-APVTGGQIGEDRARIDF-DLPEFDEED 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 649 IKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGL-RAVFDETYP--DPVRVVSI-GVPVSellddPsgpagsltsvefCG 724
Cdd:COG2872 142 LEEIEAEANELIAADLPVRIYWITREELEAIPGLvRTMSVLPPPgvGRVRIVEIgGVDLQ-----P------------CG 204
|
250 260
....*....|....*....|....*....
gi 109148542 725 GTHLRNSSHAGAFVIVTEEAIAKGIRRIV 753
Cdd:COG2872 205 GTHVANTGEIGRIKITKIEKKGKGNRRVY 233
|
|
| DHHA1 |
pfam02272 |
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ... |
813-959 |
1.55e-18 |
|
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain] Cd Length: 139 Bit Score: 82.87 E-value: 1.55e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 813 DELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIdsnpNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTV 892
Cdd:pfam02272 2 ESLNEELKELEKELEELKEALALLKAKELLEKAEEIN----GVKVLVAEVGEGWDAGALGIAADRLKKKLGDPVIVLVAK 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 109148542 893 DNEaGKITCLCQVPQNaanRGLKASEWVQQVSGLMDGKGGGKDVsAQATGKNVGCLQEALQLATSFA 959
Cdd:pfam02272 78 EDG-DKVKVSARSSKD---KGVDAGELLKEVAAILGGGGGGHDL-AAGAGIDAEKLDEALELLEEAI 139
|
|
| PLN02961 |
PLN02961 |
alanine-tRNA ligase |
525-753 |
1.63e-12 |
|
alanine-tRNA ligase
Pssm-ID: 178546 [Multi-domain] Cd Length: 223 Bit Score: 67.80 E-value: 1.63e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 525 CGVVLDKTCFYAEQGGQIYDEGYLVkvddSSEDKTEFTVKNAQVRGGYVLHIGTIYG-------DLKVGDQVWLFIDEPR 597
Cdd:PLN02961 3 IALVLDRTIFHPQGGGQPSDTGRIV----ISGGDTKFSVQDVRRKDGVVYHYGVFEGsnpesasPFEAGDEVTVTVDESR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 598 RRPIMSNHTATHILNFALRSVlgeadQKGSLVA------PDRLRFDFTAKGAMSTQQIKKAE--EIANEMIEAAKAVYTQ 669
Cdd:PLN02961 79 RKLHSRLHSAGHLLDVCMARV-----GLGPLEPgkgyhfPDGPFVEYKGKIPQGELDSKQDEleAEANELIAEGGKVSAA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 670 DCPLAAAKAIQGLRA---VFDETYPdpvRVVSIGvpvsellDDPSGPagsltsvefCGGTHLRNSSHAGAfVIVTEEAIA 746
Cdd:PLN02961 154 VLPYDEAAELCGGSLpdyIAKDSTP---RIVKIG-------DSPGCP---------CGGTHVADVSEITS-VKVTQIRVK 213
|
....*..
gi 109148542 747 KGIRRIV 753
Cdd:PLN02961 214 KGVTRVS 220
|
|
| tRNA_SAD |
pfam07973 |
Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of ... |
694-752 |
2.38e-12 |
|
Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Pssm-ID: 429764 [Multi-domain] Cd Length: 43 Bit Score: 62.08 E-value: 2.38e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 109148542 694 VRVVSIGVpvsellddpsgpagslTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRI 752
Cdd:pfam07973 1 VRVVSIGD----------------FDVDLCGGTHVPNTGEIGAFKILKGESKNKGLRRI 43
|
|
| tRNA_SAD |
smart00863 |
Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active form of ... |
694-752 |
1.12e-11 |
|
Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Pssm-ID: 197931 [Multi-domain] Cd Length: 43 Bit Score: 60.09 E-value: 1.12e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 109148542 694 VRVVSIGVpvsellddpsgpagslTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRI 752
Cdd:smart00863 1 VRVVSIGD----------------FSVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRI 43
|
|
| mtIF2_IVc |
cd03692 |
C2 subdomain of domain IV in mitochondrial translation initiation factor 2; This model ... |
495-531 |
4.20e-04 |
|
C2 subdomain of domain IV in mitochondrial translation initiation factor 2; This model represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 has been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Pssm-ID: 293893 [Multi-domain] Cd Length: 84 Bit Score: 40.17 E-value: 4.20e-04
10 20 30
....*....|....*....|....*....|....*..
gi 109148542 495 GSYVFENTVATvmaLRREKMFVEEVSTGQECGVVLDK 531
Cdd:cd03692 39 GEVIYEGKISS---LKRFKDDVKEVKKGYECGITLEN 72
|
|
| class_II_aaRS-like_core |
cd00768 |
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA ... |
8-247 |
5.07e-04 |
|
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Pssm-ID: 238391 [Multi-domain] Cd Length: 211 Bit Score: 42.49 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 8 SEIRQRFIDFFKR----NEHTYV-------HSSATIPLDDPTLLFANAGMNQFKPIF---LNTIDPSHPMAKLSRAANTQ 73
Cdd:cd00768 3 SKIEQKLRRFMAElgfqEVETPIverepllEKAGHEPKDLLPVGAENEEDLYLRPTLepgLVRLFVSHIRKLPLRLAEIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 74 KCIRAGGKHNDLDdvgkdvyHHTFFEMLGSWSFGDYFKELA----CKMALELLTQEFGIPIERLYVTYFGGDEAAglead 149
Cdd:cd00768 83 PAFRNEGGRRGLR-------RVREFTQLEGEVFGEDGEEASefeeLIELTEELLRALGIKLDIVFVEKTPGEFSP----- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109148542 150 leckqiwqnlglddtkilpgnmkdnfwemgdtGPCGPCSEIHYDRIGGRDaahlvnqddpnvLEIWNLVFIQYN------ 223
Cdd:cd00768 151 --------------------------------GGAGPGFEIEVDHPEGRG------------LEIGSGGYRQDEqaraad 186
|
250 260
....*....|....*....|....*..
gi 109148542 224 ---READGILKPLPKKSIdtGMGLERL 247
Cdd:cd00768 187 lyfLDEALEYRYPPTIGF--GLGLERL 211
|
|
| CoA_binding_2 |
pfam13380 |
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins ... |
700-768 |
3.50e-03 |
|
CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Pssm-ID: 433162 [Multi-domain] Cd Length: 116 Bit Score: 38.29 E-value: 3.50e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 109148542 700 GVPVSELLDDPSGPagsLTSVEFCggthlRNSSHAGAFVivtEEAIAKGIRRIVAVTGAEAQKALRKAE 768
Cdd:pfam13380 42 GEPVYPSLADPPEP---VDLVDVF-----RPPEAVPEIV---EEALALGAKAVWLQPGIENEEAAAIAR 99
|
|
| |
