|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1446-2141 |
1.05e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1446 KKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRfdclKGEMEDDKSKMEKKESNLETELKSQTA 1525
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE----ISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1526 RIMELEDHITQKTIEIESLN---EVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELE 1602
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEeklEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1603 TKKKELEHVNLSVKSKEEELKALEDRLESesaAKLAELKRKAEQKIAAIKKqLLSQMEEKEEQYKKGTEShLSELNTKLQ 1682
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEE---AELKELQAELEELEEELEE-LQEELERLEEALEELREE-LEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1683 EREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQeEADSQGC------VQKTYEEKIS---------VLQRNLTE 1747
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG-LSGILGVlselisVDEGYEAAIEaalggrlqaVVVENLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1748 KEKLLQrvGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQHED--------------------QSMIGH------LQEEL 1801
Cdd:TIGR02168 558 AKKAIA--FLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEgflgvakdlvkfdpklrkalSYLLGGvlvvddLDNAL 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1802 EEKNKKYS----------LIVAQHVEKEGGKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELdsclvrQKEVHR 1871
Cdd:TIGR02168 636 ELAKKLRPgyrivtldgdLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL------RKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1872 VEMEELTSKYEKLQALQQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQK 1951
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1952 DLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEMTIkETINKAQEVEAELL 2031
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI-ESLAAEIEELEELI 868
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2032 ESHQEETNQLLKKIAEKDDDLKRTAKRYEEiLDAREEEMTAKVRDLQTQLEELQKK---YQQKLEQEEnpgndnVTIMEL 2108
Cdd:TIGR02168 869 EELESELEALLNERASLEEALALLRSELEE-LSEELRELESKRSELRRELEELREKlaqLELRLEGLE------VRIDNL 941
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 6715600 2109 QTQLAQK--------TTLISDSKLKEQEFREQIHNLEDRLK 2141
Cdd:TIGR02168 942 QERLSEEysltleeaEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
741-1665 |
1.25e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 741 KEHEVSIQRTEKALKdqinQLELLLKERDKHLKEHQAHVENLEA--DIKRSEGELQQASAKLDV--FQSYQSATHEQTKA 816
Cdd:TIGR02168 175 KETERKLERTRENLD----RLEDILNELERQLKSLERQAEKAERykELKAELRELELALLVLRLeeLREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 817 YEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGN 896
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 897 KEQEQTKqilvekenmILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKAKEMQEtlkkklld 976
Cdd:TIGR02168 331 KLDELAE---------ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-------- 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 977 QEAKLKKELENTALELSQkekqfnakmlemaqansagISDAVSRLETNQKEQIESLTEVHRRELNDVISIWEKKLNQQAE 1056
Cdd:TIGR02168 394 QIASLNNEIERLEARLER-------------------LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1057 ELqEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEegvkqdttlneLQEQLKQKSAHVNSLAQDETKLKAHL 1136
Cdd:TIGR02168 455 EL-ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-----------LQENLEGFSEGVKALLKNQSGLSGIL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1137 ----EKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEE 1212
Cdd:TIGR02168 523 gvlsELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1213 LAIQLDICCKKTEALLeaktnelinisssktNAILSRISHCQhrttkvkealliktctvseleaqlrqlteeqntlniSF 1292
Cdd:TIGR02168 603 VAKDLVKFDPKLRKAL---------------SYLLGGVLVVD------------------------------------DL 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1293 QQATHQLEEKENQiksmkadiESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSL 1372
Cdd:TIGR02168 632 DNALELAKKLRPG--------YRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1373 SKQLTDLNVQL-QNSISLSEKEAAISSLRKQYDEEKCE---LLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKK 1448
Cdd:TIGR02168 704 RKELEELEEELeQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1449 AQSRftqhQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEkkesNLETELKSQTARIM 1528
Cdd:TIGR02168 784 IEEL----EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE----DLEEQIEELSEDIE 855
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1529 ELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGE---EKDNRVKEAEEKILTLENQVYSMKAELETKK 1605
Cdd:TIGR02168 856 SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEelrELESKRSELRRELEELREKLAQLELRLEGLE 935
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6715600 1606 KELEHVNLSVKSK----EEELKALEDRLESESAAKLAELKRkAEQKIAAIKKQLLSQMEEKEEQ 1665
Cdd:TIGR02168 936 VRIDNLQERLSEEysltLEEAEALENKIEDDEEEARRRLKR-LENKIKELGPVNLAAIEEYEEL 998
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
921-1768 |
7.06e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 74.72 E-value: 7.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 921 KKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEK------VKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQ 994
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKreyegyELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 995 KEKQFNAKMLEMAQANsAGISDAVSRLETNQKEQIESLtEVHRRELNDVISIWEKKLNQQAEELQEIhEIQLQEKEQEVA 1074
Cdd:TIGR02169 263 LEKRLEEIEQLLEELN-KKIKDLGEEEQLRVKEKIGEL-EAEIASLERSIAEKERELEDAEERLAKL-EAEIDKLLAEIE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1075 ELKQKIllfgcekEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQ 1154
Cdd:TIGR02169 340 ELEREI-------EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1155 EQLVELKMLAEEDKRKVSELTSKLKTTDEEfqslkssheksnksLEDKSLEFKKLSEELaiqldiccKKTEALLEAKTNE 1234
Cdd:TIGR02169 413 EELQRLSEELADLNAAIAGIEAKINELEEE--------------KEDKALEIKKQEWKL--------EQLAADLSKYEQE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1235 LINISSsKTNAILSRISHCQHRttkvkealliktctVSELEAQLRQLTEEQntlnISFQQAThqlEEKENQIKSMKADIE 1314
Cdd:TIGR02169 471 LYDLKE-EYDRVEKELSKLQRE--------------LAEAEAQARASEERV----RGGRAVE---EVLKASIQGVHGTVA 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1315 SLVTEKE----ALQKEGGNQQQAA-----SEKESCITQLKkelSENINAVTLMKEELKEKKVEISSLSKQ---------L 1376
Cdd:TIGR02169 529 QLGSVGEryatAIEVAAGNRLNNVvveddAVAKEAIELLK---RRKAGRATFLPLNKMRDERRDLSILSEdgvigfavdL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1377 TDLNVQLQNSIS------------------------------LSEKEAAI---SSLRKQYDEEKCELLDQVQDLSFKVDT 1423
Cdd:TIGR02169 606 VEFDPKYEPAFKyvfgdtlvvedieaarrlmgkyrmvtlegeLFEKSGAMtggSRAPRGGILFSRSEPAELQRLRERLEG 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1424 LSKEKISALEQVDdwsnkfsewkkKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEME 1503
Cdd:TIGR02169 686 LKRELSSLQSELR-----------RIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1504 DDKSKM---EKKESNLETELKSQTARIMELEDHITQKTI-EIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNR 1579
Cdd:TIGR02169 755 NVKSELkelEARIEELEEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1580 VKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLEsesaaKLAELKRKAEQKIAAIKKQLlsqm 1659
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG-----DLKKERDELEAQLRELERKI---- 905
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1660 EEKEEQYKKgTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQ------------EEADSQ 1727
Cdd:TIGR02169 906 EELEAQIEK-KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEiralepvnmlaiQEYEEV 984
|
890 900 910 920
....*....|....*....|....*....|....*....|.
gi 6715600 1728 GCVQKTYEEKISVLQRNLTEKEKLLQRVGQEKEETVSSHFE 1768
Cdd:TIGR02169 985 LKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFE 1025
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
315-997 |
7.21e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.79 E-value: 7.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 315 EKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAknlieqlEQDKGMVIAetkRQMHETLEMKEEEIAQLRSRIKQm 394
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA-------EDAKRVEIA---RKAEDARKAEEARKAEDAKKAEA- 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 395 TTQGEELREQKE--KSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDvMKK 472
Cdd:PTZ00121 1181 ARKAEEVRKAEElrKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK-FEE 1259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 473 SSEEQIAKLQKLHEKELARKEQELTKKLQTRErefQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKK---AILT 549
Cdd:PTZ00121 1260 ARMAHFARRQAAIKAEEARKADELKKAEEKKK---ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKkadAAKK 1336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 550 ESENKLRDLQQEAETYRTRILELESSLEKS----LQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDA 625
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAeaaeKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 626 LWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLE--KLDVKQTELESLSSELSEVLKARHKL 703
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEakKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 704 EEELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLE 783
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 784 ADIKRSEGELQQASAKldvfqsyqsATHEQTKAYEEQLAQLQQKLLDLETERILLTK-QVAEVEAQKKDVCTELDAHKIQ 862
Cdd:PTZ00121 1577 NMALRKAEEAKKAEEA---------RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKK 1647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 863 VQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQilveKENMILQMREGQKKEIEILTQKLSAKEDSIHILN 942
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK----AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 943 EEYETKFKNQEKKMEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEK 997
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1271-2084 |
4.43e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 4.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1271 VSELEAQLRQLtEEQNTLNISFQQATHQLEEKenQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSE 1350
Cdd:TIGR02168 195 LNELERQLKSL-ERQAEKAERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1351 NINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQnsiSLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKIS 1430
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQ---ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1431 ALEQVDDWSNKFSEWKKKAQSRftqhQNTVKELQIQLELKSKEAYEKDEQINLLKEELdqqnkrfdclkGEMEDDKSKME 1510
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEEL----ESRLEELEEQLETLRSKVAQLELQIASLNNEI-----------ERLEARLERLE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1511 KKESNLETELKSQTARIMELEDHITQKTIEieslnevlknynqQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTL 1590
Cdd:TIGR02168 414 DRRERLQQEIEELLKKLEEAELKELQAELE-------------ELEEELEELQEELERLEEALEELREELEEAEQALDAA 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1591 ENQVYSMKAELETkkkelehvnlsvkskeeeLKALEDRLESESAAKLAELKrkaEQKIAAIKKQLLSQMEEKEEQYKKGT 1670
Cdd:TIGR02168 481 ERELAQLQARLDS------------------LERLQENLEGFSEGVKALLK---NQSGLSGILGVLSELISVDEGYEAAI 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1671 ESHLSE-LNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQGCVQKTYEEKISVLQR------ 1743
Cdd:TIGR02168 540 EAALGGrLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkals 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1744 ----------------NLTEKEKLLQRVGQEKEETVSSHF-------EMRCQYQERLIKLEHAEAKQHEDQSMIGHLQEE 1800
Cdd:TIGR02168 620 yllggvlvvddldnalELAKKLRPGYRIVTLDGDLVRPGGvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1801 LEEKNKKYSLIVAQHVEKEggknniQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSK 1880
Cdd:TIGR02168 700 LAELRKELEELEEELEQLR------KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1881 YEKLQALQQMDGRNKPTELLEENTEEKSKSHLvqpkllSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEH 1960
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREAL------DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1961 QQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELLESHQE---- 2036
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKlaql 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 6715600 2037 ---------ETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQTQLEEL 2084
Cdd:TIGR02168 928 elrleglevRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
279-801 |
9.11e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 9.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 279 KTLETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDE----------RLQELEKIKDLHMAEKTKLITQL 348
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEaqaeeyellaELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 349 RDAKNLIEQLEQDKGMVIAETKRQmHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEE 428
Cdd:COG1196 319 EELEEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 429 ARRKLK--AEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELARKEQELTKKLQTRERE 506
Cdd:COG1196 398 LAAQLEelEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 507 FQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQ 586
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 587 SKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQA 666
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 667 HIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSIIKEHEVS 746
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 747 IQRTEKALKDQinQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLD 801
Cdd:COG1196 718 EEELEEEALEE--QLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
281-565 |
1.62e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 281 LETLQQRVKRQENLLKRCKETIQSHKEQctllTSEKEALQEQLDERLQELEKikdlhmaEKTKLITQLRDAKNLIEQLEQ 360
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELEL-------ELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 361 DKgMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSEraafEELEKALSTAQKTEEARRKLKAEMDEQ 440
Cdd:COG1196 303 DI-ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE----EELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 441 IKTIEKTSEEERISLQQELSRVKQ-EVVDVMKKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKSQ 519
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQlEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 6715600 520 SEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAETY 565
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
385-1124 |
5.12e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 5.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 385 AQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERiSLQQELSRVKQ 464
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED-AKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 465 EVVDVMKKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREfqEQMKVALEKSQSEYLKisQEKEQQESLALEELELQK 544
Cdd:PTZ00121 1162 DARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAE--AARKAEEERKAEEARK--AEDAKKAEAVKKAEEAKK 1237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 545 KAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAvhlEAEKNKHNKEITVMVEKHKTElESLKHQQD 624
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK---KAEEKKKADEAKKAEEKKKAD-EAKKKAEE 1313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 625 ALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLE 704
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 705 EELSVLKDQTDKMKQELEAKMDEQK--NHHQQQVDSIIKEHEVSIQRTEKALKDQInqlelllkeRDKHLKEHQAHVENL 782
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKkaDEAKKKAEEKKKADEAKKKAEEAKKADEA---------KKKAEEAKKAEEAKK 1464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 783 EADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEV----EAQKKDVCTELDA 858
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkaeEAKKADEAKKAEE 1544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 859 HKiQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSI 938
Cdd:PTZ00121 1545 KK-KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 939 HILNEEYETKFKNQ-EKKMEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDA 1017
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQlKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1018 VSRLETNQKEQIESLTEVHRRELNDVISIWEKKlnQQAEELQEIHEiQLQEKEQEVAELKQKILLFGCEKEEMNKEITWL 1097
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAK--KEAEEDKKKAE-EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
730 740
....*....|....*....|....*..
gi 6715600 1098 KEEGVKQDTTLNELQEQLKQKSAHVNS 1124
Cdd:PTZ00121 1781 IEEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-972 |
6.17e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 6.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 287 RVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDE-RLQELEKIKDLHMAEKTklitqLRDAKNLIEQLEQDKgMV 365
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEElRLEVSELEEEIEELQKE-----LYALANEISRLEQQK-QI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 366 IAETKRQMHETLEMKEEEIAQLRSRI-------KQMTTQGEELREQKE------KSERAAFEELEKALSTAQKTEEARRK 432
Cdd:TIGR02168 307 LRERLANLERQLEELEAQLEELESKLdelaeelAELEEKLEELKEELEsleaelEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 433 LKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEkELARKEQELtKKLQTREREFQEQMK 512
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA-ELEELEEEL-EELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 513 VAL----EKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRTRILEL-------ESSLEKSLQ 581
Cdd:TIGR02168 465 ELReeleEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyEAAIEAALG 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 582 EN-------KNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLK------------------- 635
Cdd:TIGR02168 545 GRlqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKdlvkfdpklrkalsyllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 636 ----QQYQTEMEKLREKCEQE-----KETLLKDKEIIFQAHiEEMNEKTLEK---LDVKQTELESLSSELSEVLKARHKL 703
Cdd:TIGR02168 625 vlvvDDLDNALELAKKLRPGYrivtlDGDLVRPGGVITGGS-AKTNSSILERrreIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 704 EEELSVLKDQTDKMKQELEAKMDEQKNHHQQ--QVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDK---HLKEHQAH 778
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDlaRLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 779 VENLEADIKRSEGELQQASAKLDVFQSYQSATHE-----QTKAYEEQLAQLQQKLLDLETERIL--LTKQVAEVEAQKKD 851
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEeaanlRERLESLERRIAATERRLEDLEEQIeeLSEDIESLAAEIEE 863
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 852 VCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVyESKLEDGNKEQEQTKQILVEKENMILQMREgqkkEIEILTQKL 931
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEEL-SEELRELESKRSELRRELEELREKLAQLEL----RLEGLEVRI 938
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 6715600 932 SAKEDSihiLNEEYETKFKNQEKKMEKVKQKAKEMQETLKK 972
Cdd:TIGR02168 939 DNLQER---LSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
547-1316 |
6.38e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 6.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 547 ILTESENKLRDLQQEAET---YRtRILELESSLEKSLQENKNQSkdlavhLEAEKNKHNKEITVMVEKHKtELESLKHQQ 623
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKaerYK-ELKAELRELELALLVLRLEE------LREELEELQEELKEAEEELE-ELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 624 DALWTEKlqvlkqqyQTEMEKLREKCEQEKETLLKDKEIIfqAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKL 703
Cdd:TIGR02168 266 EEKLEEL--------RLEVSELEEEIEELQKELYALANEI--SRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 704 EEELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSiikehevsiQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLE 783
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEEL---------ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 784 ADIKRSEGELQQASakldvfqsyQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKdvctELDAHKIQV 863
Cdd:TIGR02168 407 ARLERLEDRRERLQ---------QEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE----ELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 864 QDLMQQLEKQNSEMEQKVKSLtqvyESKLEDGNKEQEQTKQILVEKENM---------ILQMREGQKKEIE--------- 925
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVDEGYEAAIEaalggrlqa 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 926 ILTQKLSAKEDSIHILNEEYETK-----------FKNQEKKMEKVKQKAKEMQetLKKKLLDQEAKLKKELEN------- 987
Cdd:TIGR02168 550 VVVENLNAAKKAIAFLKQNELGRvtflpldsikgTEIQGNDREILKNIEGFLG--VAKDLVKFDPKLRKALSYllggvlv 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 988 -----TALELSQKEK-QFNAKMLEMAQANSAGISdavsrleTNQKEQIESLTEVHRRELNDVisiwEKKLNQQAEELQEI 1061
Cdd:TIGR02168 628 vddldNALELAKKLRpGYRIVTLDGDLVRPGGVI-------TGGSAKTNSSILERRREIEEL----EEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1062 hEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEV 1141
Cdd:TIGR02168 697 -EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1142 DLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEElaiqldicc 1221
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ--------- 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1222 KKTEALLEAKTNELINISSSKTNAILSRISHCQHRTTKVKEALliktctvSELEAQLRQLTEEQNTLNISFQQATHQLEE 1301
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL-------ALLRSELEELSEELRELESKRSELRRELEE 919
|
810
....*....|....*
gi 6715600 1302 KENQIKSMKADIESL 1316
Cdd:TIGR02168 920 LREKLAQLELRLEGL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
318-637 |
7.00e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 7.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 318 ALQEQLDERLQELEKIKDLHM-AEKTKLITQLRDAKNLIEQLEqdkgmviaetkrqmhETLEMKEEEIAQLRSRIKQMTT 396
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELeAELEELEAELEELEAELEELE---------------AELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 397 QGEELREQkEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIektsEEERISLQQELSRVKQEVVDVMKK--SS 474
Cdd:COG1196 282 ELEEAQAE-EYELLAELARLEQDIARLEERRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEEleEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 475 EEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENK 554
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 555 LRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVL 634
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
...
gi 6715600 635 KQQ 637
Cdd:COG1196 517 AGL 519
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
703-1026 |
8.87e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 8.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 703 LEEELSVLKDQTDKMK--QELEAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVE 780
Cdd:COG1196 198 LERQLEPLERQAEKAEryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 781 NLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHK 860
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 861 IQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVekenmILQMREGQKKEIEILTQKLSAKEDSIHI 940
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE-----LEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 941 LNEEYETKFKNQEKKMEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDAVSR 1020
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
....*.
gi 6715600 1021 LETNQK 1026
Cdd:COG1196 513 ALLLAG 518
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1390-1858 |
1.12e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1390 SEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQiQLEL 1469
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE-AAEE 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1470 KSKEAYEKDEQINLLKEELD---QQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTARimeledhitqktieiESLNE 1546
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK---------------KKAEE 1429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1547 VLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQvysMKAELETKKKELEHVNLSVKSKEEELKALE 1626
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK---KKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1627 DRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETL 1706
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1707 --IVPRSAKNVAAYTEQEEADSQGCVQKTYEEKISVLQ-RNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHA 1783
Cdd:PTZ00121 1587 kkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 1784 EAKQHEDQSMIGHLQEELEEKNKKYSLIVAQHVEKEGGKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKE 1858
Cdd:PTZ00121 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1049-1704 |
1.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1049 KKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQK---------- 1118
Cdd:TIGR02168 203 KSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELrlevseleee 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1119 ----SAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEK 1194
Cdd:TIGR02168 283 ieelQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1195 SNKSLEDKSLEFKKLSEE-----------------LAIQLDICCKKTEALLEAKTNELINISSSKTNAILSRISHCQHRT 1257
Cdd:TIGR02168 363 LEAELEELESRLEELEEQletlrskvaqlelqiasLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1258 TKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEK 1337
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1338 ESCITQLKKE----------LSENINAVTLmkEELKEKKVEISSLSKQL--------------TDLNVQLQNSISLSEKE 1393
Cdd:TIGR02168 523 GVLSELISVDegyeaaieaaLGGRLQAVVV--ENLNAAKKAIAFLKQNElgrvtflpldsikgTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1394 AAISSLRKQYDEEKCELLDQVQDLSFKVDTLSkekiSALEQV--------------DDWSNKFS---EWKKKAQSRFTQH 1456
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLGGVLVVDDLD----NALELAkklrpgyrivtldgDLVRPGGVitgGSAKTNSSILERR 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1457 QNtVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDdkskMEKKESNLETELKSQTARIMELEDHITQ 1536
Cdd:TIGR02168 677 RE-IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----LSRQISALRKDLARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1537 KTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKD---NRVKEAEEKILTLENQVYSMKAELETKKKELEHVNL 1613
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEqlkEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1614 SVKSKEEELKALEDRLE--SESAAKLAELKRKAEQKIAAIKKQL--LSQMEEKEEQYKKGTESHLSELNTKLQEREREVH 1689
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEelSEDIESLAAEIEELEELIEELESELeaLLNERASLEEALALLRSELEELSEELRELESKRS 911
|
730
....*....|....*
gi 6715600 1690 ILEEKLKSVESSQSE 1704
Cdd:TIGR02168 912 ELRRELEELREKLAQ 926
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
256-783 |
1.58e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 256 EVFTKEENPESDGEPVVEDGTSVKTLETLQQRVKRQENLLKRCKET---IQSHKEQCTLLTSEKEALQEQLDERLQELEK 332
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAkkkADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 333 IKDLHMAEKTKLITQLRDAKNLIEQLEQDKGmviAETKRQMHETLEMKEEEIAQLRSRIKQmttqGEELREQKEKSERAa 412
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKK---ADEAKKKAEEDKKKADELKKAAAAKKK----ADEAKKKAEEKKKA- 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 413 fEELEKALSTAQKTEEARRKlkAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELARK 492
Cdd:PTZ00121 1434 -DEAKKKAEEAKKADEAKKK--AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 493 EQELTKKLQTR----------EREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEA 562
Cdd:PTZ00121 1511 KADEAKKAEEAkkadeakkaeEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 563 ETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLKQQYQTEM 642
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 643 EKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSvLKDQTDKMKQELE 722
Cdd:PTZ00121 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAK-KEAEEDKKKAEEA 1749
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6715600 723 AKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQL-ELLLKERDKHLKEHQAHVENLE 783
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEdEKRRMEVDKKIKDIFDNFANII 1811
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1461-2086 |
1.92e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1461 KELQIQLELKSKEAYEKdeQINLLKEELDQQNKRFDclkgEMEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTIE 1540
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELE----ELEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1541 IESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDN---RVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKS 1617
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAEleeELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1618 KEEELKALEDRLESESAAKLAELKRKAEQkiaaikKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKS 1697
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAEL------AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1698 VESSQSETLivprsaknvAAYTEQEEAdsqgcvqktyEEKISVLQRNLTEKEKLLQRVGQEKEETVSshfemrcqyqeRL 1777
Cdd:COG1196 444 LEEAAEEEA---------ELEEEEEAL----------LELLAELLEEAALLEAALAELLEELAEAAA-----------RL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1778 IKLEHAEAKQHEDQSMIGHLQEELEEKNKKYSLIVAQHVEKEGGKNNIQAKQNLENvfDDVQKTLQEKELTCQILEQKIK 1857
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQ--NIVVEDDEVAAAAIEYLKAAKA 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1858 ELDSCLVRQKEVHRVEMEELTSKYEKLQA--LQQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGA 1935
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAvdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1936 EREKQKLGKEIVRLQ-KDLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEM 2014
Cdd:COG1196 652 EGEGGSAGGSLTGGSrRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6715600 2015 TIKETINKAQEVEAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEI----LDAREE--EMTAKVRDLQTQLEELQK 2086
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEEyeELEERYDFLSEQREDLEE 809
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-933 |
1.93e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 317 EALQEQLDERLQELEKikdlhMAEKTklitqlRDAKNLIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTT 396
Cdd:COG1196 192 EDILGELERQLEPLER-----QAEKA------ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 397 QGEELREQKEKsERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTS---EEERISLQQELSRVKQEVVDVmkKS 473
Cdd:COG1196 261 ELAELEAELEE-LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELEEELAELEEELEEL--EE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 474 SEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEksqseylkisQEKEQQESLALEELELQKKAILTESEN 553
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----------LEELAEELLEALRAAAELAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 554 KLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAvHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQV 633
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALE-EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 634 LKQQYQTEMEKlrekcEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKAR-HKLEEELSVLKD 712
Cdd:COG1196 487 AEAAARLLLLL-----EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALqNIVVEDDEVAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 713 QTDKMKQELEAKMDEqknhhqQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGE 792
Cdd:COG1196 562 AIEYLKAAKAGRATF------LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 793 LQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEK 872
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6715600 873 QNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMILQM--REGQKKEIEILTQKLSA 933
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
311-606 |
2.55e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 311 LLTSEKEALQEQLDERLQELEKIkDLHMAEKTKLITQLRDAKNLIEQLEQDKGmviaETKRQMHETLEMKEEEIAQLRSR 390
Cdd:COG1196 236 ELEAELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELELEEAQ----AEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 391 IKQMTTQGEELREQKEKSERAAfEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVM 470
Cdd:COG1196 311 RRELEERLEELEEELAELEEEL-EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 471 KKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKSQSEylKISQEKEQQESLALEELELQKKAILTE 550
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE--EEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 6715600 551 SENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEIT 606
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1004-1889 |
2.63e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 2.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1004 LEMAQANSAGISDAVSRLETN------QKEQIESLTEVHRRELNDVISIWEKKLNQQAEELQEIHEiQLQEKEQEVAELK 1077
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQE-ELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1078 QKILLFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQL 1157
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1158 VELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELAIQldicckktealleakTNELIN 1237
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL---------------NNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1238 ISSSktnaiLSRISHCQHRTTKVKEALLIKTctvseLEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLv 1317
Cdd:TIGR02168 405 LEAR-----LERLEDRRERLQQEIEELLKKL-----EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEA- 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1318 teKEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEElkekkveisslsKQLTDLNVQLQNSISLSEK-EAAI 1396
Cdd:TIGR02168 474 --EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ------------SGLSGILGVLSELISVDEGyEAAI 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1397 SSLrkqydeekceLLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQIQLELKSKEAYE 1476
Cdd:TIGR02168 540 EAA----------LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1477 KDEQINLLKEELDQQNKRFDCLKGEMEDDKSKmekkesnletelkSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKD 1556
Cdd:TIGR02168 610 FDPKLRKALSYLLGGVLVVDDLDNALELAKKL-------------RPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERR 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1557 IEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESaak 1636
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS--- 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1637 laelkrkAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETlivprsaknva 1716
Cdd:TIGR02168 754 -------KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----------- 815
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1717 ayteQEEADSQGCVQKTYEEKISVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMIGH 1796
Cdd:TIGR02168 816 ----NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1797 LQEELEEKNKKyslivaqhvEKEGGKNNIQAKQNLENvfddVQKTLQEKELTCQILEQKIKELdscLVRQKEVHRVEMEE 1876
Cdd:TIGR02168 892 LRSELEELSEE---------LRELESKRSELRRELEE----LREKLAQLELRLEGLEVRIDNL---QERLSEEYSLTLEE 955
|
890
....*....|...
gi 6715600 1877 LTSKYEKLQALQQ 1889
Cdd:TIGR02168 956 AEALENKIEDDEE 968
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
368-987 |
2.80e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 2.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 368 ETKRQMHETlemkEEEIAQLRSRIKQMTTQGEELREQKEKSERAAfeELEKALSTAQKTEEARRKLKAEMDEQIKTIEKT 447
Cdd:COG1196 176 EAERKLEAT----EENLERLEDILGELERQLEPLERQAEKAERYR--ELKEELKELEAELLLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 448 SEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELARKEQELTkklQTREREFQEQMKVALEKSQSEyLKISQ 527
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR---LEQDIARLEERRRELEERLEE-LEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 528 EKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEitv 607
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL--- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 608 mvEKHKTELESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEiifQAHIEEMNEKTLEKLDVKQTELE 687
Cdd:COG1196 403 --EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL---EEEEEALLELLAELLEEAALLEA 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 688 SLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSII----KEHEVSIQRTEKALKDQINQLEL 763
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaAYEAALEAALAAALQNIVVEDDE 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 764 LLKERDKHLKEHQAH-VENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQV 842
Cdd:COG1196 558 VAAAAIEYLKAAKAGrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALR 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 843 AEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMILQMREGQKK 922
Cdd:COG1196 638 RAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERL 717
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 923 EIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKAKEMQETLKKKLldqeAKLKKELEN 987
Cdd:COG1196 718 EEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL----ERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1553-2114 |
3.38e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 3.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1553 QQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESE 1632
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1633 SAAK--LAELKRKAEQKIAAIKKQLLSQMEEKEEQykkgtESHLSELNTKLQEREREVHILEEKLKSVESSQSETL--IV 1708
Cdd:COG1196 301 EQDIarLEERRRELEERLEELEEELAELEEELEEL-----EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEaeLA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1709 PRSAKNVAAYTEQEEADSQgcvQKTYEEKISVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQH 1788
Cdd:COG1196 376 EAEEELEELAEELLEALRA---AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1789 EDQSMIGHLQEELEEKNKKYSLIVAQHVEKEGGKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKE 1868
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1869 VHRVEMEELTSkyekLQALQQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHndlefKLAGAEREKQKLGKEIVR 1948
Cdd:COG1196 533 EAAYEAALEAA----LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRAR-----AALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1949 LQKDLRMLRKEHQQELEILKKEYDQER--EEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEV 2026
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAArlEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2027 EAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQKLEQEENPGNDNVTIM 2106
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
....*...
gi 6715600 2107 ELQTQLAQ 2114
Cdd:COG1196 764 ELERELER 771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
288-1080 |
5.97e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 5.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 288 VKRQENLLKRCKETIQSHKE--------QCTLLTSEKEALQEQLDERLQELEKikdlhmaektkLITQLRDAKNLIEQLE 359
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKElkaelrelELALLVLRLEELREELEELQEELKE-----------AEEELEELTAELQELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 360 QDkgmvIAETKRQMHEtlemKEEEIAQLRSRIKQMTTQGEELREQKE--KSERAAFEELEKALSTAQKTEEARRKLKAEM 437
Cdd:TIGR02168 267 EK----LEELRLEVSE----LEEEIEELQKELYALANEISRLEQQKQilRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 438 DEQIKTIEKTSEEERISLQQELSRVKQEVVDvmkksSEEQIAKLQKLHEKelARKEQELTKKLQTREREFQEQMKVALEK 517
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEE-----LESRLEELEEQLET--LRSKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 518 SQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLavhleAE 597
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL-----AQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 598 KNKHNKEITVMVEKHKTELESLKHQQDALWTEK--LQVLKQQYQTEmeklrEKCEQEKETLL---------KDKEIIFQA 666
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLSgiLGVLSELISVD-----EGYEAAIEAALggrlqavvvENLNAAKKA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 667 hIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQ----------------ELEAKMDEQKN 730
Cdd:TIGR02168 562 -IAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvvdDLDNALELAKK 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 731 HHQQ----------------------QVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHqahvENLEADIKR 788
Cdd:TIGR02168 641 LRPGyrivtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL----EELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 789 SEGELQQASAKLdvfqsyqSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQ 868
Cdd:TIGR02168 717 LRKELEELSRQI-------SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 869 QLEKQNSEMEQKVKSLtqvyeSKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETK 948
Cdd:TIGR02168 790 QIEQLKEELKALREAL-----DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 949 FKNQEKKMEKVK--QKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSagisdAVSRLETNQK 1026
Cdd:TIGR02168 865 EELIEELESELEalLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL-----RLEGLEVRID 939
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....
gi 6715600 1027 EQIESLTEVHRRELndvisiwekklnQQAEELQEIHEIQLQEKEQEVAELKQKI 1080
Cdd:TIGR02168 940 NLQERLSEEYSLTL------------EEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
316-1043 |
7.80e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 7.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 316 KEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNL--IEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQ 393
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEErkAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 394 MTTQGEELREQKEKSERAAF--------EELEKAlSTAQKTEEARrklKAEMDEQIKTIEKTSEEERislqqELSRVKQE 465
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIkaeearkaDELKKA-EEKKKADEAK---KAEEKKKADEAKKKAEEAK-----KADEAKKK 1323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 466 VVDVMKKSSEEQIAKLQKLHEKELARKEQELTKKlqtrEREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKK 545
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD----EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK 1399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 546 AiltESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKdlavhleAEKNKHNKEITVMVEKHKTELESLKHQQDA 625
Cdd:PTZ00121 1400 A---EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK-------AEEAKKADEAKKKAEEAKKAEEAKKKAEEA 1469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 626 LWTEKLQVlKQQYQTEMEKLREKCEQEKEtllKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEE 705
Cdd:PTZ00121 1470 KKADEAKK-KAEEAKKADEAKKKAEEAKK---KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 706 ELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKehQAHVENLEAD 785
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK--KAEEAKIKAE 1623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 786 IKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQV--AEVEAQKKDVCTELDAHKIQV 863
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkAEEDEKKAAEALKKEAEEAKK 1703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 864 QDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEkenmiLQMREGQKKEIEILTQKLSAKEDSIHI--- 940
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE-----AKKDEEEKKKIAHLKKEEEKKAEEIRKeke 1778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 941 ------LNEEYETKFKNQEKKMEKVKQKAKEMQE---------TLKKKLLDQEAKLKKELENTALELSQKEKQ--FNAKM 1003
Cdd:PTZ00121 1779 avieeeLDEEDEKRRMEVDKKIKDIFDNFANIIEggkegnlviNDSKEMEDSAIKEVADSKNMQLEEADAFEKhkFNKNN 1858
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 6715600 1004 LEMAQANSAGISDAVSRLETNQKEQIESLTEVHRRELNDV 1043
Cdd:PTZ00121 1859 ENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDI 1898
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
710-1504 |
1.35e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 710 LKDQTDKMKQELEAKMDEQKNHHQQQVDSIIKEHE---VSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADI 786
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAEeelEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 787 KRSEGELQQASAKLDvfqsyqsATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDL 866
Cdd:TIGR02168 298 SRLEQQKQILRERLA-------NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 867 MQQLEKQNSEMEQKVKSLTQVYEsKLEDGNKEQE----QTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILN 942
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLEL-QIASLNNEIErleaRLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 943 EEYETKFKNQEKKMEKVKQKAKEMQETLkKKLLDQEAKLKKELENTALELSQKEK-QFNAKMLEMAQANSAGISDAVSRL 1021
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQAL-DAAERELAQLQARLDSLERLQENLEGfSEGVKALLKNQSGLSGILGVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1022 ETNQKEQIESLTEVHRRELNDVISIWEKKLNQQAE-------------ELQEIHEIQLQEKEQEVAELKQKILLFGCEKE 1088
Cdd:TIGR02168 529 ISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAflkqnelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLV 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1089 EMNKEIT-----WLkeEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHleklEVDLNKSLKENTFLQEQLVELKML 1163
Cdd:TIGR02168 609 KFDPKLRkalsyLL--GGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPG----GVITGGSAKTNSSILERRREIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1164 AEEDKR---KVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELAIQLdiccKKTEALLEAKTNELINISS 1240
Cdd:TIGR02168 683 EEKIEEleeKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEERIAQLSKELTE 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1241 SktnailsrishcQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEK 1320
Cdd:TIGR02168 759 L------------EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1321 EALQKEGGNQQQAASEkescITQLKKELSENINAVTLmkeelkekkvEISSLSKQLTDLNVQLQ-NSISLSEKEAAISSL 1399
Cdd:TIGR02168 827 ESLERRIAATERRLED----LEEQIEELSEDIESLAA----------EIEELEELIEELESELEaLLNERASLEEALALL 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1400 RKQYDeekcELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKA---QSRFTQHQNTVKELQIQLELKSKEAYE 1476
Cdd:TIGR02168 893 RSELE----ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIdnlQERLSEEYSLTLEEAEALENKIEDDEE 968
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 6715600 1477 K-DEQINLLK--------------EELDQQNKRFDCLKGEMED 1504
Cdd:TIGR02168 969 EaRRRLKRLEnkikelgpvnlaaiEEYEELKERYDFLTAQKED 1011
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1427-2102 |
3.95e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 3.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1427 EKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDK 1506
Cdd:PTZ00121 1224 KKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1507 SKMEKK---ESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEA 1583
Cdd:PTZ00121 1304 ADEAKKkaeEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1584 EEKILTLENQVYSMKAELETKKK---------ELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAikkq 1654
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKadelkkaaaAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA---- 1459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1655 llsqmeekEEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQGCVQKTY 1734
Cdd:PTZ00121 1460 --------EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1735 EEKISVLQRNLTEKEKLLQrvgQEKEETVSSHFEMRCQYQERliklehaeaKQHEDQSMIGHLQEELEEKNKKYSLIVAQ 1814
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADE---LKKAEELKKAEEKKKAEEAK---------KAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1815 HVEKEGGKNNIQAKQNLENVF--DDVQKTLQEKELTCQILEQKIKEldsclVRQKEVHRVEMEELTSKYEKLQALQQMDG 1892
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIkaEELKKAEEEKKKVEQLKKKEAEE-----KKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1893 RNKPTELLEENTEEKSKSHLVQpkllsnmeaqhndlEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEHQQELEILKKEyd 1972
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKK--------------EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE-- 1738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1973 qEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELLESHQEETNQLLKKIAEKDDDL 2052
Cdd:PTZ00121 1739 -AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEG 1817
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 6715600 2053 KRTAKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQKLEQEENPGNDN 2102
Cdd:PTZ00121 1818 NLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKE 1867
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
315-1182 |
7.31e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.53 E-value: 7.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 315 EKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETkrqmheTLEMKEEEIAQLRSRIKQM 394
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY------LLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 395 TTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSS 474
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 475 EEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKS--QSEYLKISQEKEQQESLALEELELQKKAILTESE 552
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLeqLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 553 NKLRDLQQEAETYRTRILELESSLEKSLQENKnqskdLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQ 632
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEE-----ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 633 VLKQQYQTEMEKLREkcEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKD 712
Cdd:pfam02463 480 VKLQEQLELLLSRQK--LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 713 QTDKMKQELEAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGE 792
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 793 LQQASAKLDVFQSYQSATHEQTkayEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEK 872
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLA---EKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 873 QNSEMEQKVKSLTQVYESKL-EDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKN 951
Cdd:pfam02463 715 LKLEAEELLADRVQEAQDKInEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 952 QEKKMEKVKQKAKEmqetlKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDAVSRLETNQKEQIES 1031
Cdd:pfam02463 795 KLKAQEEELRALEE-----ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 869
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1032 LTEVHRRELNDVISIWEKKLNQQAEELQEIHE-IQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNE 1110
Cdd:pfam02463 870 QELLLKEEELEEQKLKDELESKEEKEKEEKKElEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKE 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6715600 1111 LQEQLKQKSAHVNSLAQDEtklKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTD 1182
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLA---KEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
740-1487 |
9.72e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 9.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 740 IKEHEVSIQRTEK---ALKDQINQLELLLKERDKHLKEHQAHVENLEADIKR-SEGELQQASAKLDVFQSYQSATHEQTK 815
Cdd:TIGR02169 232 KEALERQKEAIERqlaSLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 816 AYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSL------TQVYE 889
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFaetrdeLKDYR 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 890 SKLEDGNKEQEQTKQILVEKENMILQMREgqkkEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQkAKEMQET 969
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSE----ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-LAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 970 LKKKLLDQEA---KLKKELENTALELSQKEKQ---------FNAKMLEMAQANSAGISDAVSRLETNQKEQIESLTEVHR 1037
Cdd:TIGR02169 467 YEQELYDLKEeydRVEKELSKLQRELAEAEAQaraseervrGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAG 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1038 RELNDVISIWEKKLNQQAEELQE----------IHEIQLQEKEQEVAELKQKIL----LFGCEKEEMNKEITWLKEEGVK 1103
Cdd:TIGR02169 547 NRLNNVVVEDDAVAKEAIELLKRrkagratflpLNKMRDERRDLSILSEDGVIGfavdLVEFDPKYEPAFKYVFGDTLVV 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1104 QDTT----------LNELQEQLKQKSAHV-------NSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEE 1166
Cdd:TIGR02169 627 EDIEaarrlmgkyrMVTLEGELFEKSGAMtggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1167 DKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELA---IQLDICCKKTEALLEAKTNELINISSSKT 1243
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEnvkSELKELEARIEELEEDLHKLEEALNDLEA 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1244 NAILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEAL 1323
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1324 QKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNsisLSEKEAAISSLRKQY 1403
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA---LEEELSEIEDPKGED 943
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1404 DEEKCELLDqVQDLSFKVDTLsKEKISALEQVDdwsNKFSEWKKKAQSRFtqhqNTVKELQIQLELKSKEAYEKDEQINL 1483
Cdd:TIGR02169 944 EEIPEEELS-LEDVQAELQRV-EEEIRALEPVN---MLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEK 1014
|
....
gi 6715600 1484 LKEE 1487
Cdd:TIGR02169 1015 KKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1447-1704 |
1.08e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1447 KKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRfdclKGEMEDDKSKMEKKESNLETELKSQTAR 1526
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE----LARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1527 IMELEDHITQKTIEIESLNEVLknynQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKK 1606
Cdd:COG1196 325 LAELEEELEELEEELEELEEEL----EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1607 ELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQERER 1686
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250
....*....|....*...
gi 6715600 1687 EVHILEEKLKSVESSQSE 1704
Cdd:COG1196 481 ELLEELAEAAARLLLLLE 498
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
299-618 |
1.35e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 60.14 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 299 KETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQ----LEQDKGMVIAETKRQMH 374
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQermaMERERELERIRQEERKR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 375 ETLEMKEEEIAQLRSRIKQMttqgEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEqiktIEKTSEEERIS 454
Cdd:pfam17380 361 ELERIRQEEIAMEISRMREL----ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVE----MEQIRAEQEEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 455 LQQELSRVKQEVVDVMKKSSEEQIAK---LQKLHEKELARKEQELTKKLQTRER-EFQEQMKVALEKSQSEYLKISQEKE 530
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERqqqVERLRQQEEERKRKKLELEKEKRDRkRAEEQRRKILEKELEERKQAMIEEE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 531 QQESLALEELELQKKAILTESEnklrdlQQEAETYRTRILELESslEKSLQENKNQSKDLAVHLEA-EKNKHNKEITVMV 609
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEER------RREAEEERRKQQEMEE--RRRIQEQMRKATEERSRLEAmEREREMMRQIVES 584
|
....*....
gi 6715600 610 EKHKTELES 618
Cdd:pfam17380 585 EKARAEYEA 593
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1444-2083 |
1.79e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1444 EWKKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKgEMEDDKSKMEKKESNLETELKSQ 1523
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1524 TARIMELEDHITQKTIEIESLNEVLKNYNQQKdiEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELET 1603
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKELKELK--EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1604 KKKELEHVNLSVKSKEEELKALEDRLES-ESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQ 1682
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1683 EREREVHILEEKLKSVESSQSETLIVPRSaknvaaYTEQEEADsqgcVQKTYEEKISVLQRNLTEKEKLLQRVGQEKEEt 1762
Cdd:PRK03918 416 ELKKEIKELKKAIEELKKAKGKCPVCGRE------LTEEHRKE----LLEEYTAELKRIEKELKEIEEKERKLRKELRE- 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1763 vsshFEMRCQYQERLIKL-EHAEAKQHEDQSMIGHLQEELEEKNKKYSLIVAQHVEKEGG----KNNIQAKQNLENVFDD 1837
Cdd:PRK03918 485 ----LEKVLKKESELIKLkELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEikslKKELEKLEELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1838 VQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLqalqqmdgrnkptelleenteekskshlvqpkl 1917
Cdd:PRK03918 561 LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLEL--------------------------------- 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1918 lSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEhqqeLEILKKEYDQEREEKIKQEQEDLELKHNSTLKQL 1997
Cdd:PRK03918 608 -KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE----LEELEKKYSEEEYEELREEYLELSRELAGLRAEL 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1998 mrefntqlaqkeqelemtiketinkaqeveaELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDARE--EEMTAKVR 2075
Cdd:PRK03918 683 -------------------------------EELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALErvEELREKVK 731
|
....*...
gi 6715600 2076 DLQTQLEE 2083
Cdd:PRK03918 732 KYKALLKE 739
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
855-1683 |
3.42e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 3.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 855 ELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYEsKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAK 934
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE-RLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 935 EDSIHILNEEYETKFKNQEKKMEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQAnSAGI 1014
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA-EERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1015 SDAVSRLEtNQKEQIESLTE------VHRRELNDVISIWEKKLNQQAEELQEIhEIQLQEKEQEVAELKQKILLFGCEKE 1088
Cdd:TIGR02169 325 AKLEAEID-KLLAEIEELEReieeerKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1089 EMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLnkslkentflqEQLVELKMLAEEDK 1168
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL-----------EQLAADLSKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1169 RKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEAKTNELINISSSKTNAI-- 1246
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLnn 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1247 ----------------------------LSRISHCQHRTTKVKEALLI----------------------KTCTVSELEA 1276
Cdd:TIGR02169 552 vvveddavakeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIgfavdlvefdpkyepafkyvfgDTLVVEDIEA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1277 ------QLRQLTEEQNTL----------NISFQQATHQLEEKEnQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESC 1340
Cdd:TIGR02169 632 arrlmgKYRMVTLEGELFeksgamtggsRAPRGGILFSRSEPA-ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1341 ITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSIS--------LSEKEAAISSLRKQ----YDEEKC 1408
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkelearIEELEEDLHKLEEAlndlEARLSH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1409 ELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRftqhQNTVKELQIQLELKSKEAYEKDEQINLLKEEL 1488
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE----IQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1489 DQQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDiehkelvqklqh 1568
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS------------ 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1569 fqELGEEKDNRVKEAEEkILTLEnQVYSMKAELETKKKELEHVNlsvkskeeeLKALEDRleSESAAKLAELKRKaEQKI 1648
Cdd:TIGR02169 935 --EIEDPKGEDEEIPEE-ELSLE-DVQAELQRVEEEIRALEPVN---------MLAIQEY--EEVLKRLDELKEK-RAKL 998
|
890 900 910
....*....|....*....|....*....|....*
gi 6715600 1649 AAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQE 1683
Cdd:TIGR02169 999 EEERKAILERIEEYEKKKREVFMEAFEAINENFNE 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
677-1350 |
4.93e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 4.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 677 EKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQQvdSIIKEHEVSIQRTEKALKD 756
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI--SRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 757 QINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERI 836
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 837 LLTKQVAEVEAQKKD-------------------VCTELDAHKIQVQDLMQQLEK---QNSEMEQKVKSLTQVYESKLE- 893
Cdd:TIGR02168 397 SLNNEIERLEARLERledrrerlqqeieellkklEEAELKELQAELEELEEELEElqeELERLEEALEELREELEEAEQa 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 894 -DGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKfKNQEKKMEKV------------K 960
Cdd:TIGR02168 477 lDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIEAAlggrlqavvvenL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 961 QKAKEMQETLKKKLLDQEAKL------KKELENTALELSQKEKQFNAKMLEMAQANSAgISDAVS------RLETNQKEQ 1028
Cdd:TIGR02168 556 NAAKKAIAFLKQNELGRVTFLpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPK-LRKALSyllggvLVVDDLDNA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1029 IESLTEVHRRE----LNDVISIWEKKLNQQAEElqeiHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEgvkq 1104
Cdd:TIGR02168 635 LELAKKLRPGYrivtLDGDLVRPGGVITGGSAK----TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKE---- 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1105 dttLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEE 1184
Cdd:TIGR02168 707 ---LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1185 FQSLKSSHEKSNKSLEDKSLEFKKLSEELaiqldicckktealleAKTNELINISSSKTNAILSRISHCQHRTTKVKEAL 1264
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAEL----------------TLLNEEAANLRERLESLERRIAATERRLEDLEEQI 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1265 LIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQL 1344
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
....*.
gi 6715600 1345 KKELSE 1350
Cdd:TIGR02168 928 ELRLEG 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
651-1188 |
5.30e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 651 QEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQtelESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKmDEQKN 730
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAEL---EELEAELEELEAELAELEAELEELRLELEELELELEEA-QAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 731 HHQQQVDSIIKEHEVSIQRtEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSAT 810
Cdd:COG1196 292 ELLAELARLEQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 811 HEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYES 890
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 891 KLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEIltQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKAKE----- 965
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEEL--AEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavav 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 966 ------------------------MQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGI----SDA 1017
Cdd:COG1196 529 ligveaayeaaleaalaaalqnivVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVdlvaSDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1018 VSRLETNQKEQIESLTEVHRRELNDVISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWL 1097
Cdd:COG1196 609 READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1098 KEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSK 1177
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570
....*....|.
gi 6715600 1178 LKTTDEEFQSL 1188
Cdd:COG1196 769 LERLEREIEAL 779
|
|
| Grip |
smart00755 |
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245; |
2172-2215 |
7.01e-08 |
|
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245;
Pssm-ID: 197860 Cd Length: 46 Bit Score: 50.68 E-value: 7.01e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 6715600 2172 PTEFEYLRKVLFEYMMGRET--KTMAKVITTVLKFPDDQTQKILER 2215
Cdd:smart00755 1 EANFEYLKNVLLQFLTLRESerETLLPVISTVLQLSPEEMQKLLEV 46
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-680 |
1.04e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 287 RVKRQENLLKRCKEtIQSHKEQCTLLTSEKEALQEQLDE---RLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKG 363
Cdd:TIGR02168 665 SAKTNSSILERRRE-IEELEEKIEELEEKIAELEKALAElrkELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 364 MViAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSEraafEELEKALSTAQKTEEARRKLKAEM-DEQIK 442
Cdd:TIGR02168 744 QL-EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE----AQIEQLKEELKALREALDELRAELtLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 443 TIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEkelarkeqeltkKLQTREREFQEQMKVALEKSQSEY 522
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE------------ELEELIEELESELEALLNERASLE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 523 LKISQEKEQQESLALEELELQKKAilTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHN 602
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKR--SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6715600 603 KEItvmvEKHKTELESLKHQQDALWTEKLQVLkQQYQTEMEKLREKcEQEKETLLKDKEIIFQAhIEEMNEKTLEKLD 680
Cdd:TIGR02168 965 DDE----EEARRRLKRLENKIKELGPVNLAAI-EEYEELKERYDFL-TAQKEDLTEAKETLEEA-IEEIDREARERFK 1035
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1922-2140 |
1.66e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1922 EAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRML-----RKEHQQELEILKKEYDQEREEKIKQEQEDLElKHNSTLKQ 1996
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELlaelaRLEQDIARLEERRRELEERLEELEEELAELE-EELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1997 LMREFNTQLAQKEQELEMTIKETINKAQEVEA---------ELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDARE 2067
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEaeaelaeaeEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6715600 2068 EEMTAKVRDLQTQLEELQKKYQQKLEQEEnpgnDNVTIMELQTQLAQKTTLISDSKLKEQEFREQIHNLEDRL 2140
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEE----AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
281-518 |
3.03e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 3.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 281 LETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQ------------EQLDERLQELEKikDLHMAEKT-----K 343
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeyswdeidvASAEREIAELEA--ELERLDASsddlaA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 344 LITQLRDAKNLIEQLEQDKGMVIAETKRqmhetlemKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTA 423
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGR--------LEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 424 QKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVM--KKSSEEQIAKLQKLHEKELARKEQELTKKLQ 501
Cdd:COG4913 762 AVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDadLESLPEYLALLDRLEEDGLPEYEERFKELLN 841
|
250
....*....|....*..
gi 6715600 502 TREREFQEQMKVALEKS 518
Cdd:COG4913 842 ENSIEFVADLLSKLRRA 858
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
368-1126 |
3.09e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 368 ETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERaaFEELEKALSTAQKTEEARRKLKAEmdEQIKTIEKt 447
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER--YQALLKEKREYEGYELLKEKEALE--RQKEAIER- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 448 seeERISLQQELSRVKQEVVDVMKKSseEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQmkVALEKSQSEYLKISQ 527
Cdd:TIGR02169 245 ---QLASLEEELEKLTEEISELEKRL--EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAE--IASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 528 EKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKeitv 607
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK---- 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 608 mVEKHKTELESLKHQQDALWTEKLQVLKQQYQTEME---KLREKCEQEKETLLKDKEIifqAHIEEMNEKTLEKLDVKQT 684
Cdd:TIGR02169 394 -LEKLKREINELKRELDRLQEELQRLSEELADLNAAiagIEAKINELEEEKEDKALEI---KKQEWKLEQLAADLSKYEQ 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 685 ELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQ------QVDSIIKEHEVSIQRTEKALKDQI 758
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgTVAQLGSVGERYATAIEVAAGNRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 759 NQL----ELLLKERDKHLKEHQA-----------HVENLEADIKRSEGELQQASAKLDVFQSYQSATH------------ 811
Cdd:TIGR02169 550 NNVvvedDAVAKEAIELLKRRKAgratflplnkmRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKyvfgdtlvvedi 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 812 EQTKAYEEQLAQLQQKLLDLE----------TERILLTKQVAEvEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKv 881
Cdd:TIGR02169 630 EAARRLMGKYRMVTLEGELFEksgamtggsrAPRGGILFSRSE-PAELQRLRERLEGLKRELSSLQSELRRIENRLDEL- 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 882 KSLTQVYESKLEDGNKEQEQtkqilvekenmILQMREGQKKEIEILTQKLSAKEDSIhilneeyetkfKNQEKKMEKVKQ 961
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQ-----------LEQEEEKLKERLEELEEDLSSLEQEI-----------ENVKSELKELEA 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 962 KAKEMQETLKKkLLDQEAKLKKELENTALELSQKEKQfnaKMLEMAQANSAGISDAVSRLetNQKEQIESLTEVHRRELN 1041
Cdd:TIGR02169 766 RIEELEEDLHK-LEEALNDLEARLSHSRIPEIQAELS---KLEEEVSRIEARLREIEQKL--NRLTLEKEYLEKEIQELQ 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1042 DVISIWEKKLNQQAEELQEIhEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAH 1121
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENL-NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
....*
gi 6715600 1122 VNSLA 1126
Cdd:TIGR02169 919 LSELK 923
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1260-2145 |
8.09e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 8.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1260 VKEALLIKTCTVSELEAQLRQLTEEQNTLnISFQQATHQLEEKENQIKSmkADIESLVTEKEALQKEggnqqqaASEKES 1339
Cdd:TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKA-ERYQALLKEKREYEGYELL--KEKEALERQKEAIERQ-------LASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1340 CITQLKKELSENinavtlmKEELKEKKVEISSLSKQLTDLNVQLQNSIS--LSEKEAAISSLRKQYDEEKcellDQVQDL 1417
Cdd:TIGR02169 252 ELEKLTEEISEL-------EKRLEEIEQLLEELNKKIKDLGEEEQLRVKekIGELEAEIASLERSIAEKE----RELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1418 SFKVDTLSKEKISALEQVDDWSNKFSEWKKkaqsRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDC 1497
Cdd:TIGR02169 321 EERLAKLEAEIDKLLAEIEELEREIEEERK----RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1498 LKGEMEDdkskMEKKESNLETELKSQTARIMELEdhitqktieieslnevlknyNQQKDIEhkelvQKLQHFQELGEEKD 1577
Cdd:TIGR02169 397 LKREINE----LKRELDRLQEELQRLSEELADLN--------------------AAIAGIE-----AKINELEEEKEDKA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1578 NRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLeseSAAKLAELKRKAEQKIAAIKKQ--- 1654
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA---RASEERVRGGRAVEEVLKASIQgvh 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1655 -LLSQMEEKEEQYKKGTESHLS-ELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSaknvaayteqeeADSQGCVQK 1732
Cdd:TIGR02169 525 gTVAQLGSVGERYATAIEVAAGnRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKM------------RDERRDLSI 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1733 TYEEKISVLQRNLTEKEKLLQRVgqekeetvsshfeMRCQYQERLIKLEHAEAKQHEDQSMIGHLQEELEEKNkkySLIV 1812
Cdd:TIGR02169 593 LSEDGVIGFAVDLVEFDPKYEPA-------------FKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKS---GAMT 656
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1813 AQHVEKEGGKNNiqakqnlenvfddvQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSkyeKLQALQQMDG 1892
Cdd:TIGR02169 657 GGSRAPRGGILF--------------SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQ---ELSDASRKIG 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1893 RNKPTELLEENTEEKSKshlvqpKLLSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKehqqELEILKKEYD 1972
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLK------ERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE----ALNDLEARLS 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1973 QEREEKIKQEQEDLELKHNSTLKQLmREFNTQLAQKEQELEMTIKETINKAQEVEA--ELLESHQEETNQLLKKIAEKDD 2050
Cdd:TIGR02169 790 HSRIPEIQAELSKLEEEVSRIEARL-REIEQKLNRLTLEKEYLEKEIQELQEQRIDlkEQIKSIEKEIENLNGKKEELEE 868
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2051 DLKRTAKRYEEiLDAREEEMTAKVRDLQTQLEELQKKYQQ-KLEQEENPGNDNVTIMELQTQLAQKTTlISDSKLKEQEF 2129
Cdd:TIGR02169 869 ELEELEAALRD-LESRLGDLKKERDELEAQLRELERKIEElEAQIEKKRKRLSELKAKLEALEEELSE-IEDPKGEDEEI 946
|
890
....*....|....*.
gi 6715600 2130 REQIHNLEDRLKKYEK 2145
Cdd:TIGR02169 947 PEEELSLEDVQAELQR 962
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
413-1217 |
9.27e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.59 E-value: 9.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 413 FEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELARK 492
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 493 EQELTKKLQTREREF----------QEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEA 562
Cdd:pfam02463 239 IDLLQELLRDEQEEIesskqeiekeEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 563 ETYRTRILELESSLEKSLQENKNQSKDLavhLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLKQQYQTEM 642
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKE---LEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 643 EKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELE 722
Cdd:pfam02463 396 ELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 723 AKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKrsegelqQASAKLDV 802
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN-------YKVAISTA 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 803 FQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTK-QVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKV 881
Cdd:pfam02463 549 VIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKlKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 882 KSLTqvYESKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQ 961
Cdd:pfam02463 629 LKDT--ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 962 KAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQ-FNAKMLEMAQANSAGISDAVSRLETNQKEQIESLTEVHRREL 1040
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQkIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1041 NDVISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCE---KEEMNKEITWLKEEGVKQDTTLNELQEQLKQ 1117
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEeelEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1118 KSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTfLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNK 1197
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELESKEEKEKEEKK-ELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA 945
|
810 820
....*....|....*....|
gi 6715600 1198 SLEDKSLEFKKLSEELAIQL 1217
Cdd:pfam02463 946 DEKEKEENNKEEEEERNKRL 965
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1488-2013 |
1.28e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1488 LDQQNKRFDCLKGEMEDDKSK-MEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDiEHKELVQKL 1566
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKdLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERRE-ELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1567 QHFQEL-------GEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLEsESAAKLAE 1639
Cdd:PRK02224 261 EDLRETiaetereREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE-ECRVAAQA 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1640 LKRKAEQKIAAIKkQLLSQMEEKEEQYKKgTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYT 1719
Cdd:PRK02224 340 HNEEAESLREDAD-DLEERAEELREEAAE-LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1720 EQEEADSQGCVqKTYEEKISVLQRNLTEKEKLLQ-----RVGQEKEEtvSSHFEMRCQYQERLIKLEhAEAKQHEDQsmi 1794
Cdd:PRK02224 418 REERDELRERE-AELEATLRTARERVEEAEALLEagkcpECGQPVEG--SPHVETIEEDRERVEELE-AELEDLEEE--- 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1795 ghlQEELEEKNKKYSLIVAQHVEKEGGKNNiqaKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEM 1874
Cdd:PRK02224 491 ---VEEVEERLERAEDLVEAEDRIERLEER---REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1875 EELTSKYEKLQALQQMDGRNKPTELleenteekskshlvqpkllsnmeaQHNDLEFKLAGAErekqKLGKEIVRLQKdlr 1954
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIE------------------------SLERIRTLLAAIA----DAEDEIERLRE--- 613
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 6715600 1955 mlRKEHQQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELE 2013
Cdd:PRK02224 614 --KREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLD 670
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
840-1696 |
1.84e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 840 KQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMILQMREG 919
Cdd:pfam02463 172 KEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 920 QKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKmEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQF 999
Cdd:pfam02463 252 EIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEE-LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1000 NAKMLEMAQANSAGISDAVSRLETNQKEQIESLTEVHRRELNDVISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQK 1079
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1080 ILLFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVE 1159
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1160 LKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSnksledKSLEFKKLSEELAIQLDICCKKTEALLEAKTNELINIS 1239
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIS------AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1240 SSKTNAILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTE 1319
Cdd:pfam02463 565 KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1320 KEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSISLSEKEAAISSL 1399
Cdd:pfam02463 645 ESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1400 RKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDE 1479
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1480 QINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLETELksqtariMELEDHITQKTIEIESLNEVLKNYNQQKDIEH 1559
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE-------QKLEKLAEEELERLEEEITKEELLQELLLKEE 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1560 KELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAE 1639
Cdd:pfam02463 878 ELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEE 957
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6715600 1640 LKRKAEQKIAAIKK------QLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLK 1696
Cdd:pfam02463 958 EEERNKRLLLAKEElgkvnlMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLK 1020
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
136-452 |
2.46e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 136 KEQLIQRLRRMERSLSSYRGKYSElvtAYQMLqREKKKLQGILSQSQDKSLRRIAELREELQMDQQ---AKKHLQEEFDA 212
Cdd:TIGR02169 690 LSSLQSELRRIENRLDELSQELSD---ASRKI-GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQeieNVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 213 SLEEKDQYISVLQTQVSLLKQRLRNGPMNV------DVLKPLPQLEPQAEVFTKEENPESDGEPVVEDgtSVKTLETLQQ 286
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEiqaelsKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK--EIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 287 RVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGmvi 366
Cdd:TIGR02169 844 DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS--- 920
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 367 aetkrQMHETLEMKEEEIAQLRSRIKQMTTQGEE------LREQKEKSERA----------AFEELEKALSTAQKTEEAR 430
Cdd:TIGR02169 921 -----ELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAELQRVEEEiralepvnmlAIQEYEEVLKRLDELKEKR 995
|
330 340
....*....|....*....|..
gi 6715600 431 RKLKAEMDEQIKTIEKTSEEER 452
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1510-1854 |
2.82e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1510 EKKESNLEtELKSQTARIMELEDHITQKTIEIESLNEvlknyNQQKDIEHKELVQKLQHFQelGEEKDNRVKEAEEKILT 1589
Cdd:TIGR02169 170 RKKEKALE-ELEEVEENIERLDLIIDEKRQQLERLRR-----EREKAERYQALLKEKREYE--GYELLKEKEALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1590 LENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAE---------QKIAAIKKQLLSQME 1660
Cdd:TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGeleaeiaslERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1661 EKEEQYKKGTESHLSELnTKLQEREREVHILEEKLKSVESSQSETLIVPRSAknvaayTEQEEADSQGCVQKT--YEEKI 1738
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKEELEDLRAE------LEEVDKEFAETRDELkdYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1739 SVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRcqyqerlIKLEHAEAKQHEDQSMIGHLQEELEEKNKKYSLIVAQHVEK 1818
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLN-------AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
330 340 350
....*....|....*....|....*....|....*..
gi 6715600 1819 EGGKNNIQAKQN-LENVFDDVQKTLQEKELTCQILEQ 1854
Cdd:TIGR02169 468 EQELYDLKEEYDrVEKELSKLQRELAEAEAQARASEE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1131-1700 |
3.01e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 3.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1131 KLKAHLEKLEVDLnkSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLS 1210
Cdd:COG1196 217 ELKEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1211 EELAiqldicckKTEALLEAKTNELINISSSKTNAILSRISHCQHRttkvkealliktctvSELEAQLRQLTEEQNTLNI 1290
Cdd:COG1196 295 AELA--------RLEQDIARLEERRRELEERLEELEEELAELEEEL---------------EELEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1291 SFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEIS 1370
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1371 SLSKQLTDLNVQLQNSIS----LSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWK 1446
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEeeaeLEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1447 KKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTAR 1526
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1527 IMELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKlqhfQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKK 1606
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA----RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1607 ELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQERER 1686
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
570
....*....|....
gi 6715600 1687 EVHILEEKLKSVES 1700
Cdd:COG1196 748 LEEEALEELPEPPD 761
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
170-1009 |
3.89e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 3.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 170 EKKKLQGILSQSQDKSLRRIAELREELQMDQQAKKHLQEEFDASLEEKDQYISVLQTQVSLLKQRLRNGPMNVDVLKPLP 249
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 250 QLEPQAEVFTKEENpesdgepvvedgtsvktletlqQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQE 329
Cdd:pfam02463 254 ESSKQEIEKEEEKL----------------------AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 330 LEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSE 409
Cdd:pfam02463 312 DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 410 RAAFEELEKALSTAQKTEEARRKLKAEMD-----EQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKL 484
Cdd:pfam02463 392 LKEEELELKSEEEKEAQLLLELARQLEDLlkeekKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 485 HEKELARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRD---LQQE 561
Cdd:pfam02463 472 DLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAistAVIV 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 562 AETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLKQQYQTE 641
Cdd:pfam02463 552 EVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKD 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 642 MEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQEL 721
Cdd:pfam02463 632 TELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 722 EAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLD 801
Cdd:pfam02463 712 LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 802 VFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKV 881
Cdd:pfam02463 792 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 882 KSLTQVYESKLED-GNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVK 960
Cdd:pfam02463 872 LLLKEEELEEQKLkDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKE 951
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 6715600 961 QKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQA 1009
Cdd:pfam02463 952 ENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
137-404 |
4.11e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 52.27 E-value: 4.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 137 EQLIQRLRRMERSLSSYRGKYSELVTAYQMLQREKKKLQGILSQS---QDKSL-RRIAELREELQMDQQAKKHLQ----- 207
Cdd:PRK04863 840 RQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLnllADETLaDRVEEIREQLDEAEEAKRFVQqhgna 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 208 ----EEFDASLEEKDQYISVLQTQVSLLKQRLRNGPMNVDVLKPLPQlepQAEVFTKEENPESDGEpvvEDGTSvktlET 283
Cdd:PRK04863 920 laqlEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ---RRAHFSYEDAAEMLAK---NSDLN----EK 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 284 LQQRVKRQENLLKRCKETIQSHKEQCTL-------LTSEKEALQEQLDERLQELEKI--------KDLHMAEKTKLITQL 348
Cdd:PRK04863 990 LRQRLEQAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLgvpadsgaEERARARRDELHARL 1069
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 6715600 349 RDAKNLIEQLEQdkgmviaetkrqmheTLEMKEEEIAQLRSRIKQMTTQGEELREQ 404
Cdd:PRK04863 1070 SANRSRRNQLEK---------------QLTFCEAEMDNLTKKLRKLERDYHEMREQ 1110
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1336-2152 |
6.96e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1336 EKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQ 1415
Cdd:pfam02463 206 AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1416 DLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQIQLE--LKSKEAYEKDEQINLLKEELDQQNK 1493
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEelEKELKELEIKREAEEEEEEELEKLQ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1494 RFDCLKGEMEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTIEI----ESLNEVLKNYNQQKDIEHKELVQKLQHF 1569
Cdd:pfam02463 366 EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELarqlEDLLKEEKKEELEILEEEEESIELKQGK 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1570 QELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIA 1649
Cdd:pfam02463 446 LTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRII 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1650 AIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQGC 1729
Cdd:pfam02463 526 SAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNL 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1730 VQKTYEE-KISVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMIGHLQEELEEKNKKY 1808
Cdd:pfam02463 606 AQLDKATlEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1809 SLIVAQHVEKEGGKNNIQAKQNLENVFDDVQKTLQEKELT-CQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLQAL 1887
Cdd:pfam02463 686 ESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADrVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1888 QQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEHQQELEIL 1967
Cdd:pfam02463 766 KSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1968 KKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELLESHQEETNQLLKKIAE 2047
Cdd:pfam02463 846 QKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKE 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2048 KDDDLKrtaKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQKLEQEENPGNDNVTIMELQTQLAQKTTLISDSKLKEQ 2127
Cdd:pfam02463 926 EAEILL---KYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEE 1002
|
810 820
....*....|....*....|....*
gi 6715600 2128 EFREQIHNLEDRLKKYEKNVYATTV 2152
Cdd:pfam02463 1003 EKKKLIRAIIEETCQRLKEFLELFV 1027
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
189-969 |
7.56e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 7.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 189 IAELREELQMDQQAKKHLqEEFDASLEEKDQYisvlqTQVSLLKQRLRNGPMNVDVLKPLPQLEPQAEVFTKEENpesdg 268
Cdd:TIGR02169 193 IDEKRQQLERLRREREKA-ERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS----- 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 269 EPVVEDGTSVKTLETLQQRVKR----QENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKL 344
Cdd:TIGR02169 262 ELEKRLEEIEQLLEELNKKIKDlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 345 ITQLRDAKNLIEQLeQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQ 424
Cdd:TIGR02169 342 EREIEEERKRRDKL-TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 425 KTEEARRKLK----------AEMDEQIKTIEKtSEEERISLQQELSRVKQEVVDvmKKSSEEQIAKLQKLHEKELARKEQ 494
Cdd:TIGR02169 421 ELADLNAAIAgieakineleEEKEDKALEIKK-QEWKLEQLAADLSKYEQELYD--LKEEYDRVEKELSKLQRELAEAEA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 495 ELtKKLQTREREFQEQMKVALEKSQSEYLKISQ---EKEQQESLALEELELQKKAILTESE-------NKLRDLQQEAET 564
Cdd:TIGR02169 498 QA-RASEERVRGGRAVEEVLKASIQGVHGTVAQlgsVGERYATAIEVAAGNRLNNVVVEDDavakeaiELLKRRKAGRAT 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 565 Y--RTRILELESSLEKSLqenKNQSKDLAVHLEAEKNKHNKEI------TVMVEkhktELESLKHQQD------------ 624
Cdd:TIGR02169 577 FlpLNKMRDERRDLSILS---EDGVIGFAVDLVEFDPKYEPAFkyvfgdTLVVE----DIEAARRLMGkyrmvtlegelf 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 625 ---------ALWTEKLQVLKQQYQTEMEKLREkceqEKETLLKDKEIIFQ--AHIEEMNEKTLEKLDVKQTELESLSSEL 693
Cdd:TIGR02169 650 eksgamtggSRAPRGGILFSRSEPAELQRLRE----RLEGLKRELSSLQSelRRIENRLDELSQELSDASRKIGEIEKEI 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 694 SEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKnhhqqQVDSIIKEHEVSIQRTEKALKD--------QINQLELLL 765
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-----ELEARIEELEEDLHKLEEALNDlearlshsRIPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 766 KERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEV 845
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 846 EAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVK--SLTQVYESKLEDGNKEQEQTKQILVEKENMILQMREGQkKE 923
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKrlSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ-AE 959
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 6715600 924 IEILTQKLSAKEDSIHILNEEYET---KFKNQEKKMEKVKQKAKEMQET 969
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEvlkRLDELKEKRAKLEEERKAILER 1008
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
739-1205 |
8.64e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 8.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 739 IIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYE 818
Cdd:TIGR04523 79 ILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLN 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 819 EQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDA---------HKIQVQDLMQ----QLEKQNSEMEQKVKSLT 885
Cdd:TIGR04523 159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKlelllsnlkKKIQKNKSLEsqisELKKQNNQLKDNIEKKQ 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 886 QVYESKLEDGNKEQEQTKQILVEKENMILQMREGQKkEIEILTQKLSAKEDSIHILNEEYE---------------TKFK 950
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK-ELEQNNKKIKELEKQLNQLKSEISdlnnqkeqdwnkelkSELK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 951 NQEKKMEKVKQKAKEMQETLKKkLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISdavsrletnQKEQIE 1030
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNKIISQ-LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQS---------YKQEIK 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1031 SLtEVHRRELNDVISIwEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNE 1110
Cdd:TIGR04523 388 NL-ESQINDLESKIQN-QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES 465
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1111 LQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKS 1190
Cdd:TIGR04523 466 LETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
490
....*....|....*
gi 6715600 1191 SHEKSNKSLEDKSLE 1205
Cdd:TIGR04523 546 ELNKDDFELKKENLE 560
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
716-1227 |
8.79e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 716 KMKQELEAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQ 795
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 796 ASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKdvctELDAHKIQVQDLMQQLEKQNS 875
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKKADAAKK 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 876 EMEQKVKSlTQVYESKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKK 955
Cdd:PTZ00121 1386 KAEEKKKA-DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 956 MEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDAVSRLETNQK-EQIESLTE 1034
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKaDEAKKAEE 1544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1035 VHR----RELNDVISIWEKKLNQQAEELQEIHEIQLQEKEqevaELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNE 1110
Cdd:PTZ00121 1545 KKKadelKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE----EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1111 LQEQLKQKSAHVNSLAQDETKLKAHLEKLEvDLNKSLKENTFLQEQlveLKMLAEEDKRKVSELTSKLKTTDEEFQSLKS 1190
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAE---EAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
490 500 510
....*....|....*....|....*....|....*....
gi 6715600 1191 SHEKSNKS--LEDKSLEFKKLSEELAIQLDICCKKTEAL 1227
Cdd:PTZ00121 1697 EAEEAKKAeeLKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
868-1700 |
1.06e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 868 QQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYET 947
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 948 KfkNQEKKMEKVKQKAKEMQETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDAVSRLETNQKE 1027
Cdd:pfam02463 249 E--QEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1028 QIESLTEVHRRELndvISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTT 1107
Cdd:pfam02463 327 EKELKKEKEEIEE---LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1108 LNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQS 1187
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1188 LKSSHEKSNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEAKTNELINISSSKTNAILSRISHCQHRTTKVKEALLIK 1267
Cdd:pfam02463 484 EQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1268 TCTVSELEAQLRQLTEEQnTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKE 1347
Cdd:pfam02463 564 QKLVRALTELPLGARKLR-LLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1348 LSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKE 1427
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1428 KISALEQVDDWSNKFSEWKKKAQSRFTQhqntvKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKS 1507
Cdd:pfam02463 723 LADRVQEAQDKINEELKLLKQKIDEEEE-----EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLK 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1508 KMEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKI 1587
Cdd:pfam02463 798 AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1588 LTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQ-----KIAAIKKQLLSQMEEK 1662
Cdd:pfam02463 878 ELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEpeellLEEADEKEKEENNKEE 957
|
810 820 830
....*....|....*....|....*....|....*...
gi 6715600 1663 EEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVES 1700
Cdd:pfam02463 958 EEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDEL 995
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1402-2145 |
1.41e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1402 QYDEEK---CELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWK----KKAQSRFTQHQNTVKELQIQLELKSKEA 1474
Cdd:TIGR02169 167 EFDRKKekaLEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQallkEKREYEGYELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1475 YEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESN----LETELKSQTARIMELEDHITQKTIEIESLNEVLKN 1550
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1551 YNQQ---KDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLS---VKSKEEELKA 1624
Cdd:TIGR02169 327 LEAEidkLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKlekLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1625 LEDRLESES---AAKLAELKRKAEQKIAAIKkQLLSQMEEKEEQYKKGT-------------ESHLSELNTKLQEREREV 1688
Cdd:TIGR02169 407 ELDRLQEELqrlSEELADLNAAIAGIEAKIN-ELEEEKEDKALEIKKQEwkleqlaadlskyEQELYDLKEEYDRVEKEL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1689 HILEEKLKSVESSQSetLIVPRSAKNVAAyTEQEEADSQGcVQKTYEEKISVLQRNLTEKE----KLLQRVGQEKEETVS 1764
Cdd:TIGR02169 486 SKLQRELAEAEAQAR--ASEERVRGGRAV-EEVLKASIQG-VHGTVAQLGSVGERYATAIEvaagNRLNNVVVEDDAVAK 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1765 SHFEMRCQYQ-ERLIKLEHAEAKQHEDQSMIGHLQE------ELEEKNKKYSLIVAQHVEKEGGKNNIQAKQNLENVFDD 1837
Cdd:TIGR02169 562 EAIELLKRRKaGRATFLPLNKMRDERRDLSILSEDGvigfavDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRM 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1838 VQktlqekeLTCQILEQK--IKELDSCLVRQKEVHRVEMEELTSKYEKLQALQqmdgrnkptelleenteekskshlvqp 1915
Cdd:TIGR02169 642 VT-------LEGELFEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLK--------------------------- 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1916 KLLSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEHQQELEILKkeydqEREEKIKQEQEDLElkhnsTLK 1995
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE-----ELEEDLSSLEQEIE-----NVK 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1996 QLMREFNTQLAQKEQELEmtiketinkaqEVEAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVR 2075
Cdd:TIGR02169 758 SELKELEARIEELEEDLH-----------KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2076 DLQTQLEELQKKYQQKLEQEENPGNDNVTIMELQTQLAQKTTLISDSKLKEQEFREQIHNLEDRLKKYEK 2145
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1459-1687 |
1.47e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1459 TVKELQ----IQLELKSKEayEKDEQINLLKEELDQQNKRFDCLKGEME----DDKSKMEKKESNLETELKSQTARIMEL 1530
Cdd:PRK05771 21 VLEALHelgvVHIEDLKEE--LSNERLRKLRSLLTKLSEALDKLRSYLPklnpLREEKKKVSVKSLEELIKDVEEELEKI 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1531 EDHITQKTIEIESLNEVLKNYNQQKDIehkelVQKLQHF----QELGEEKD-----NRVKEAEEKILTLENQVYsmKAEL 1601
Cdd:PRK05771 99 EKEIKELEEEISELENEIKELEQEIER-----LEPWGNFdldlSLLLGFKYvsvfvGTVPEDKLEELKLESDVE--NVEY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1602 ETKKKELEHVNLSVKSK-----EEELKALE-DRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLS 1675
Cdd:PRK05771 172 ISTDKGYVYVVVVVLKElsdevEEELKKLGfERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA 251
|
250
....*....|..
gi 6715600 1676 ELNTKLQERERE 1687
Cdd:PRK05771 252 LYEYLEIELERA 263
|
|
| GRIP |
pfam01465 |
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in ... |
2173-2212 |
1.57e-05 |
|
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. The GRIP domain contains a completely conserved tyrosine residue. At least some of these domains have been shown to bind to GTPase Arl1, see structures in.
Pssm-ID: 460221 [Multi-domain] Cd Length: 44 Bit Score: 43.88 E-value: 1.57e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 6715600 2173 TEFEYLRKVLFEYMMGRET---KTMAKVITTVLKFPDDQTQKI 2212
Cdd:pfam01465 2 ANLEYLKNVLLQFLESKESserKQLLPVIATLLKFSPEEEQKI 44
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
295-522 |
2.38e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 295 LKRCKETIQSHKEQCTLLTSEKEALQE--QLDERLQELEKIKdlHMAEKTKLITQLRDAKNLIEQLEQDkgmviaetkrq 372
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERyaAARERLAELEYLR--AALRLWFAQRRLELLEAELEELRAE----------- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 373 mhetLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEER 452
Cdd:COG4913 304 ----LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 453 islqQELSRVKQEVVDVMKKSSEEQIAKLQKLHekELARKEQELTKKLQTREREFQeqmkvALEKSQSEY 522
Cdd:COG4913 380 ----EEFAALRAEAAALLEALEEELEALEEALA--EAEAALRDLRRELRELEAEIA-----SLERRKSNI 438
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1510-2096 |
2.47e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1510 EKKESNLETELKSQTARIMELEDHITQKTIEIES-LNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKIL 1588
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARkAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1589 TLENQVYSMKAE----LETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEE 1664
Cdd:PTZ00121 1162 DARKAEEARKAEdakkAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1665 QYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQGCVQKTYEE--KISVLQ 1742
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEakKADEAK 1321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1743 RNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMIGHLQEELE------EKNKKYSLIVAQHV 1816
Cdd:PTZ00121 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADaakkkaEEKKKADEAKKKAE 1401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1817 EKEGGKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLQALQQMDGRNKP 1896
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1897 TELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGAEREKQKL-----GKEIVRLQKDLRMLRKEHQQELEILKKEY 1971
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkaeeAKKADEAKKAEEKKKADELKKAEELKKAE 1561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1972 DQEREEKIKQEQED--LELKHNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQE--VEAELLESHQEETNQL--LKKI 2045
Cdd:PTZ00121 1562 EKKKAEEAKKAEEDknMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEakIKAEELKKAEEEKKKVeqLKKK 1641
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 6715600 2046 AEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQKLEQEE 2096
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
138-679 |
2.53e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 138 QLIQRLRRMERSLSSYRGKYSELVTAYQMLQREKKKLQgilsQSQDKSLRRIAELREELQMDQQAKKHLQEEFDASLEEK 217
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELE----EELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 218 DQYISVLQTQVSLLKQRLRngpmnvDVLKPLPQLEPQAEVFTKEENPESDGEpvVEDGTSVKTLETLQQRVKRQENLLKR 297
Cdd:COG1196 368 LEAEAELAEAEEELEELAE------ELLEALRAAAELAAQLEELEEAEEALL--ERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 298 CKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHETL 377
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 378 EMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEERISLQQ 457
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 458 ELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALE-KSQSEYLKISQEKEQQESLA 536
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAgGSLTGGSRRELLAALLEAEA 679
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 537 LEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTEL 616
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6715600 617 ESLKHQQdalwtEKLQVLKQQYQT----------EMEKLREKCE---QEKETLLKDKEIIFQAhIEEMNEKTLEKL 679
Cdd:COG1196 760 PDLEELE-----RELERLEREIEAlgpvnllaieEYEELEERYDflsEQREDLEEARETLEEA-IEEIDRETRERF 829
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
299-1215 |
2.93e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 299 KETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLhmaEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHETLE 378
Cdd:TIGR00606 151 NNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKAL---ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQIT 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 379 MKEEEIAQLRSRIKQMTTQGEELREQKEKSE--RAAFEELEKALSTAQKTEEARRKLKAEM-----------DEQIKTIE 445
Cdd:TIGR00606 228 SKEAQLESSREIVKSYENELDPLKNRLKEIEhnLSKIMKLDNEIKALKSRKKQMEKDNSELelkmekvfqgtDEQLNDLY 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 446 -------KTSEEERISLQQELSRVKQEVVDVMKKSSEEQIA------KLQKLHEKELARKEQELTKKLQTREREFQEQMK 512
Cdd:TIGR00606 308 hnhqrtvREKERELVDCQRELEKLNKERRLLNQEKTELLVEqgrlqlQADRHQEHIRARDSLIQSLATRLELDGFERGPF 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 513 VALEKSQSEYLKIS-QEKEQQESLALEELELQKKAILTESENKLRDlqqeAETYRTRILELESSLeksLQENKNQSKDLA 591
Cdd:TIGR00606 388 SERQIKNFHTLVIErQEDEAKTAAQLCADLQSKERLKQEQADEIRD----EKKGLGRTIELKKEI---LEKKQEELKFVI 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 592 VHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEM 671
Cdd:TIGR00606 461 KELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEML 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 672 NEKTLEKLD----------VKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELeAKMDEQKNHHQQQVDSiIK 741
Cdd:TIGR00606 541 TKDKMDKDEqirkiksrhsDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKEL-ASLEQNKNHINNELES-KE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 742 EHEVSIQR------TEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTK 815
Cdd:TIGR00606 619 EQLSSYEDklfdvcGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFIS 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 816 AYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMeQKVKSLTQVYESKLEDG 895
Cdd:TIGR00606 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI-QRLKNDIEEQETLLGTI 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 896 NKEQEQTKQILVEKEnmILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEK--KMEKVKQKAKEMQetlkkK 973
Cdd:TIGR00606 778 MPEEESAKVCLTDVT--IMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKqhELDTVVSKIELNR-----K 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 974 LLDQEAKLKKELENTALELSQKEKQFNAKMLEMAQANsagisdavSRLETNQKEQIESLTEV-HRRELNDVISIWEKKLN 1052
Cdd:TIGR00606 851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFE--------EQLVELSTEVQSLIREIkDAKEQDSPLETFLEKDQ 922
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1053 QQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQ-DTTLNELQEQLKQKSAHVNSLAQDetk 1131
Cdd:TIGR00606 923 QEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQkETELNTVNAQLEECEKHQEKINED--- 999
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1132 lkahLEKLEVDLNKSLKENTFLQEQLVELKMlaeedKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSE 1211
Cdd:TIGR00606 1000 ----MRLMRQDIDTQKIQERWLQDNLTLRKR-----ENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNH 1070
|
....
gi 6715600 1212 ELAI 1215
Cdd:TIGR00606 1071 VLAL 1074
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
556-1117 |
3.00e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 3.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 556 RDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQDALWTEKLQVLK 635
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 636 QQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTD 715
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 716 KMKQELEAKMDEQKNHHQQQVDsiIKEHEVSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQ 795
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAE--LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 796 ASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVcteLDAHKIQVQDLMQQLEKQNS 875
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV---KAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 876 EMEQKVKSLTQVYESKLEDGNkeQEQTKQILVEKENMILQMREGQKKEIEILTQK-LSAKEDSIHILNEEYETKFKNQEK 954
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNI--VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRaRAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 955 KMEKVKQKAKEMQ---ETLKKKLLDQEAKLKKELENTALELSQKEKQFNAKmLEMAQANSAGISDAVSRLETNQKEQIES 1031
Cdd:COG1196 609 READARYYVLGDTllgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG-GSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1032 LTEVHRRELNDVISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFgcEKEEMNKEITWLKEEGVKQDTTLNEL 1111
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE--ELLEEEELLEEEALEELPEPPDLEEL 765
|
....*.
gi 6715600 1112 QEQLKQ 1117
Cdd:COG1196 766 ERELER 771
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1581-1889 |
3.09e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1581 KEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLE--SESAAKLAELKRKAEQKIAAIKKQLLSQ 1658
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGeiEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1659 MEEKEEQykkgtESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIvprsaknvaaYTEQEEADSQGCVQKTYEEKI 1738
Cdd:TIGR02169 750 EQEIENV-----KSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI----------PEIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1739 SVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMIGHLQEELEEKNKKYSLIVAQHVEK 1818
Cdd:TIGR02169 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6715600 1819 EGGKNNIQAKQN-LENVFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMeELTSKYEKLQALQQ 1889
Cdd:TIGR02169 895 EAQLRELERKIEeLEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEE 965
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
436-1146 |
3.76e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 436 EMDEQIKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIaklqklhekelarkEQELTKKLQTREREFQEQMKVAL 515
Cdd:pfam15921 82 EYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQM--------------ERDAMADIRRRESQSQEDLRNQL 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 516 EKSQSEYLKISQEKEQQESLALEELELQKKAILTEsENKLRDLqqeaetyRTRILELESSLEKSLQENKNQSkdlAVHLE 595
Cdd:pfam15921 148 QNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-EGVLQEI-------RSILVDFEEASGKKIYEHDSMS---TMHFR 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 596 AeknkHNKEITVMVEKHKTELESLKHQQDALwTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIifqaHIEEMNEKT 675
Cdd:pfam15921 217 S----LGSAISKILRELDTEISYLKGRIFPV-EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEV----EITGLTEKA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 676 LEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQEL-EAKMDEQKNHHQQQVDSIIKEHEVSIQRTEK-- 752
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELrEAKRMYEDKIEELEKQLVLANSELTEARTERdq 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 753 ------ALKDQINQLELLLKERDKHLKEHQAH--------------VENLEADIKRSEGELQQASAKLDVFQSYQSATHE 812
Cdd:pfam15921 368 fsqesgNLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 813 QTKAY----EEQLAQLQQKLLDLETERILLTKQVAEVEAQKkdvcTELDAHKIQVQDLMQQLEKQNSEME------QKVK 882
Cdd:pfam15921 448 RQMAAiqgkNESLEKVSSLTAQLESTKEMLRKVVEELTAKK----MTLESSERTVSDLTASLQEKERAIEatnaeiTKLR 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 883 SLTQVYESKLEDGNKEQEQTKQILVEKENMILQMREgQKKEIEILTQKLsakEDSIHILNEEYETKFKNQEKKMEKVK-- 960
Cdd:pfam15921 524 SRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAE-KDKVIEILRQQI---ENMTQLVGQHGRTAGAMQVEKAQLEKei 599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 961 -------QKAKEMQETLKKKLLDQEAKLKK-ELENTALELSQKE--------KQFNAKMLEMAQANSAGISDAVSRLET- 1023
Cdd:pfam15921 600 ndrrlelQEFKILKDKKDAKIRELEARVSDlELEKVKLVNAGSErlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVl 679
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1024 -----NQKEQIESLTEVHRRELNDVISIWEKKLNQ-QAEELQEIHEI--------QLQEKEQEVAELKQKILLFGCEKEE 1089
Cdd:pfam15921 680 krnfrNKSEEMETTTNKLKMQLKSAQSELEQTRNTlKSMEGSDGHAMkvamgmqkQITAKRGQIDALQSKIQFLEEAMTN 759
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 6715600 1090 MNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKS 1146
Cdd:pfam15921 760 ANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKA 816
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1449-1672 |
3.77e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1449 AQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLET---ELKSQTA 1525
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErreELGERAR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1526 RIMELEDHITQKTI--EIESLNEVLKNYNQQKDIE--HKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAEL 1601
Cdd:COG3883 94 ALYRSGGSVSYLDVllGSESFSDFLDRLSALSKIAdaDADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6715600 1602 ETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTES 1672
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1549-1662 |
3.85e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1549 KNYNQQKDIEHKELVQKL--QHFQELgEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALE 1626
Cdd:PRK12704 52 EAIKKEALLEAKEEIHKLrnEFEKEL-RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130
|
90 100 110
....*....|....*....|....*....|....*.
gi 6715600 1627 DRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEK 1662
Cdd:PRK12704 131 EELEELIEEQLQELERISGLTAEEAKEILLEKVEEE 166
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1097-1722 |
4.29e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1097 LKEEGVKQDTTLNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTS 1176
Cdd:TIGR04523 24 YKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1177 KLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELAIQLDICCKKTEALLEA-----KTNELINISSSKTNAILSRIS 1251
Cdd:TIGR04523 104 DLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLnnkynDLKKQKEELENELNLLEKEKL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1252 HCQHRTTKVKEALLIKTCTVSELEAqlrqLTEEQNTLNIsfqqathQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQ 1331
Cdd:TIGR04523 184 NIQKNIDKIKNKLLKLELLLSNLKK----KIQKNKSLES-------QISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1332 QAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSIS------LSEKEAAISSLRKQYDE 1405
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNkelkseLKNQEKKLEEIQNQISQ 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1406 EK---CELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQN---TVKELQIQLELKSKEAYEKDE 1479
Cdd:TIGR04523 333 NNkiiSQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNlesQINDLESKIQNQEKLNQQKDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1480 QINLLKEELDQQNKRFDCLKGEMEDDKSKMekkeSNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIEH 1559
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEI----KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQ 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1560 KELVQKLQHFQELGEEKdnrvKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAE 1639
Cdd:TIGR04523 489 KELKSKEKELKKLNEEK----KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEID 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1640 LKRKAEQKIAAIKKQLLSQMEEKEEQYKKgTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYT 1719
Cdd:TIGR04523 565 EKNKEIEELKQTQKSLKKKQEEKQELIDQ-KEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
...
gi 6715600 1720 EQE 1722
Cdd:TIGR04523 644 KQE 646
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1918-2145 |
4.97e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 4.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1918 LSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEhQQELEILKKEYDQEREEKIKQEQEDLELKHNST--LK 1995
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER-LANLERQLEELEAQLEELESKLDELAEELAELEekLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1996 QLMREFNtQLAQKEQELEMTIKETINKAQEVEAELLE------SHQEETNQLLKKIAEKDDDLKRTAKRYE----EILDA 2065
Cdd:TIGR02168 348 ELKEELE-SLEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARLERLEDRRErlqqEIEEL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2066 REEEMTAKVRDLQTQLEELQKKYQQKLEQEENPgndNVTIMELQTQLAQKTTLISDSKLKEQEFREQIHNLEDRLKKYEK 2145
Cdd:TIGR02168 427 LKKLEEAELKELQAELEELEEELEELQEELERL---EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
187-497 |
5.05e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 187 RRIAELREELQMDQQAKKHLQEEFDASLEEKDQyisvLQTQVSLLKQRLRngpmnvDVLKPLPQLEPQAEVFTKEEnpes 266
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEE----LEEELEQLRKELE------ELSRQISALRKDLARLEAEV---- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 267 dgepvvedgtsvktlETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKLit 346
Cdd:TIGR02168 743 ---------------EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-- 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 347 qlrDAKNLIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEEL---REQKEKSERAAFEELEKALSTA 423
Cdd:TIGR02168 806 ---DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeIEELEELIEELESELEALLNER 882
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6715600 424 QKTEEARRKLKAEMDEQIKTIEKTsEEERISLQQELSRVKQEVVDVmkkSSEEQIAKLQKLHEKELARKEQELT 497
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELREL-ESKRSELRRELEELREKLAQL---ELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1270-1805 |
6.47e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1270 TVSELEAQLRQLTEEQNTLNISFQQATHQL----------EEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKES 1339
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRdeadevleehEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1340 CITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQL-QNSISLSEKEAAISSLRKQYDEekceLLDQVQDLS 1418
Cdd:PRK02224 287 RLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLeECRVAAQAHNEEAESLREDADD----LEERAEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1419 FKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKE-ELDQQNKRFDC 1497
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAElEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1498 LKGEMEDDKSK-----MEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIEHK--ELVQKLQHFQ 1570
Cdd:PRK02224 443 EEAEALLEAGKcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRieRLEERREDLE 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1571 ELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLEsESAAKLAELKRKAEqkiaa 1650
Cdd:PRK02224 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA-ELKERIESLERIRT----- 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1651 ikkqLLSQMEEKEEQYKKGTE--SHLSELNTKLQEREREvhiLEEKLKSVESSQSETLIvprsaknvaayteqEEADSQG 1728
Cdd:PRK02224 597 ----LLAAIADAEDEIERLREkrEALAELNDERRERLAE---KRERKRELEAEFDEARI--------------EEAREDK 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1729 CVQKTYEEKISVLQRNLTEKE-KLLQRVGQEKEE--TVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMIGHLQEELEEKN 1805
Cdd:PRK02224 656 ERAEEYLEQVEEKLDELREERdDLQAEIGAVENEleELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRN 735
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1578-2097 |
6.81e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 6.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1578 NRVKEAEEKILT----LENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLEsesaaklaELKRKAEqKIAAIKK 1653
Cdd:PRK03918 175 KRRIERLEKFIKrtenIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK--------ELEELKE-EIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1654 QLlsqmeEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQGcvQKT 1733
Cdd:PRK03918 246 EL-----ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKR--LSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1734 YEEKISVLQRNLTEKEKLLQRVGQEKEETVsshfemrcQYQERLIKLEhaeaKQHEDQSMIGHLQEELEEKNKKYSLIVA 1813
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLK--------ELEKRLEELE----ERHELYEEAKAKKEELERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1814 QHVEKEGgKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELDS----CLVRQKEVHRVEMEELTSKY-------- 1881
Cdd:PRK03918 387 EKLEKEL-EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkCPVCGRELTEEHRKELLEEYtaelkrie 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1882 EKLQALQQMDGRNKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEF----KLAGAEREKQKLGKEIVRLQKDLRMLR 1957
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1958 KEhQQELEILKKEYDQEREEKIKQEQEDLELKHNstLKQLMREFNTQLAQKEQELEMTIKETIN-----KAQEVEAELLE 2032
Cdd:PRK03918 546 KE-LEKLEELKKKLAELEKKLDELEEELAELLKE--LEELGFESVEELEERLKELEPFYNEYLElkdaeKELEREEKELK 622
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 2033 SHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQKLEQEEN 2097
Cdd:PRK03918 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEK 687
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
279-604 |
8.80e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 279 KTLETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAKnlIEQL 358
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK--AEEA 1612
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 359 EQdkgmviAETKRQMHETLEMKEEE---IAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARrklKA 435
Cdd:PTZ00121 1613 KK------AEEAKIKAEELKKAEEEkkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK---KA 1683
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 436 EMDEQIKTIEKTSEEERISLQQELSRVKQEVV---DVMKKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMK 512
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkkaEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 513 VALEKSQSEYLK-----ISQEKEQQESLALEELELQKKAILTESENkLRDLQQEAETYRTRILELESSLEKSLQENKNQS 587
Cdd:PTZ00121 1764 KEEEKKAEEIRKekeavIEEELDEEDEKRRMEVDKKIKDIFDNFAN-IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQ 1842
|
330
....*....|....*..
gi 6715600 588 KDLAVHLEAEKNKHNKE 604
Cdd:PTZ00121 1843 LEEADAFEKHKFNKNNE 1859
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
456-784 |
9.19e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 456 QQELSRVKQEVVDVMKKSSEEQIAKLQKLHEKELARKEQeltkkLQTREREFQEQMKVALEKSQsEYLKISQEKEQQESL 535
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAE-----MDRQAAIYAEQERMAMERER-ELERIRQEERKRELE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 536 ALEElelQKKAILTESENKLRDLQQEAETYRTRI-LELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEitvmvEKHKT 614
Cdd:pfam17380 364 RIRQ---EEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE-----EARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 615 ELESLKHQQdALWTEKLQVLKQQYQTEMEKLRE-KCEQEKETLLKDKEIIFQAHIEEMNEKTLEKldvkqtELESLSSEL 693
Cdd:pfam17380 436 EVRRLEEER-AREMERVRLEEQERQQQVERLRQqEEERKRKKLELEKEKRDRKRAEEQRRKILEK------ELEERKQAM 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 694 SEVLKARHKLEEElsvLKDQTDKMKQELEAKMDEQKNHHQQQVdsiikEHEVSIQRTEKALKDQINQLELLLKERD--KH 771
Cdd:pfam17380 509 IEEERKRKLLEKE---MEERQKAIYEEERRREAEEERRKQQEM-----EERRRIQEQMRKATEERSRLEAMEREREmmRQ 580
|
330
....*....|...
gi 6715600 772 LKEHQAHVENLEA 784
Cdd:pfam17380 581 IVESEKARAEYEA 593
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1245-1807 |
1.07e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1245 AILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQlteEQNTLNISFQQATHQLEEKENQ--------IKSMKADIE-- 1314
Cdd:pfam12128 273 LIASRQEERQETSAELNQLLRTLDDQWKEKRDELNG---ELSAADAAVAKDRSELEALEDQhgafldadIETAAADQEql 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1315 -SLVTEKEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSISLSEKE 1393
Cdd:pfam12128 350 pSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLE 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1394 AAISSLRkqydEEKCELLDQVQDLSFKVD--TLSKEKISALEQVDDWSNKfsewkkkAQSRFTQHQNTVKELQIQLELKS 1471
Cdd:pfam12128 430 AGKLEFN----EEEYRLKSRLGELKLRLNqaTATPELLLQLENFDERIER-------AREEQEAANAEVERLQSELRQAR 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1472 KEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTARIMELED-HITQKTIEI--ESLNEVL 1548
Cdd:pfam12128 499 KRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELlHRTDLDPEVwdGSVGGEL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1549 KNYNQQKDIEHKELVQKLQHFQELGEEKD---NRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKAL 1625
Cdd:pfam12128 579 NLYGVKLDLKRIDVPEWAASEEELRERLDkaeEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1626 EDRLESESAAK---LAELKRKAEQKIAAIKKQlLSQMEEKEEQYKKGTESHLSELNTKLQEREREVhilEEKLKSVESSQ 1702
Cdd:pfam12128 659 FDEKQSEKDKKnkaLAERKDSANERLNSLEAQ-LKQLDKKHQAWLEEQKEQKREARTEKQAYWQVV---EGALDAQLALL 734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1703 SETLIVPRSAKNVAAYTEQEEADSQGCVQKTYEEKISVLQRNLTEKEKLLQRVGQEKEETVSSHFEMRCQY----QERLI 1778
Cdd:pfam12128 735 KAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWlqrrPRLAT 814
|
570 580
....*....|....*....|....*....
gi 6715600 1779 KLEHAEAKQHEDQSMIGHLQEELEEKNKK 1807
Cdd:pfam12128 815 QLSNIERAISELQQQLARLIADTKLRRAK 843
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
321-884 |
1.71e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 321 EQLDERLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAETKRQMHEtLEMKEEEIAQLRSRIKQMTTQGEE 400
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE-LPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 401 LREQKEK--SERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIE--KTSEEERISLQQELSRVKQEVVDVMKKSS-- 474
Cdd:PRK03918 240 IEELEKEleSLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREIEKRLSrl 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 475 EEQIAKLQKLHEK--ELARKEQELTKKLQTREREFQEqmkvaLEKSQSEYLKISQEKEQqeslaleeLELQKKAILTESE 552
Cdd:PRK03918 320 EEEINGIEERIKEleEKEERLEELKKKLKELEKRLEE-----LEERHELYEEAKAKKEE--------LERLKKRLTGLTP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 553 NKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITV---MVEKHKTELESLKHQQDALWTE 629
Cdd:PRK03918 387 EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgreLTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 630 KLQVLKQQyqteMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKAR-HKLEEELS 708
Cdd:PRK03918 467 ELKEIEEK----ERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKlIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 709 VLKDQTDKmKQELE---AKMDEQKNHHQQQVDSIIKEHEVSIQRTEKALKDQINQLELLLKERDKhLKEHQAHVENLEAD 785
Cdd:PRK03918 543 SLKKELEK-LEELKkklAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE-LKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 786 IKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERilLTKQVAEVEAQKKdvctELDAHKIQVQD 865
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE--LSRELAGLRAELE----ELEKRREEIKK 694
|
570
....*....|....*....
gi 6715600 866 LMQQLEKQNSEMEQKVKSL 884
Cdd:PRK03918 695 TLEKLKEELEEREKAKKEL 713
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
367-588 |
1.80e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 367 AETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAfEELEKALSTAQKTEEARRKLKAEMDEQIKTIEK 446
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 447 TSEE------ERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLheKELARKEQELTKKLQTREREFQEQmKVALEKSQS 520
Cdd:COG4942 98 ELEAqkeelaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYL--KYLAPARREQAEELRADLAELAAL-RAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6715600 521 EyLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSK 588
Cdd:COG4942 175 E-LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
117-404 |
1.86e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 117 PSDMDSEAEDLVGNSDSLNK-EQLIQRLRRMERSLS---SYRGKYSELVTAYQMLQREKKKLQGILSQSQDKSLR-RIAE 191
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERaHEALEDAREQIELLEpirELAERYAAARERLAELEYLRAALRLWFAQRRLELLEaELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 192 LREELQMDQQAKKHLQEEFDASLEEKDQyisvlqtqvsLLKQRLRNGpmnVDVLKPLPQLEPQAEvftkeenpesdgepv 271
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDE----------LEAQIRGNG---GDRLEQLEREIERLE--------------- 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 272 vedgtsvKTLETLQQRVKRQENLLKRCKETIQSHKEqctlltsEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDA 351
Cdd:COG4913 352 -------RELEERERRRARLEALLAALGLPLPASAE-------EFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 6715600 352 KNLIEQLEQdkgmviaetkrqmhetlemkeeEIAQLRSRIKQMTTQGEELREQ 404
Cdd:COG4913 418 RRELRELEA----------------------EIASLERRKSNIPARLLALRDA 448
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
282-956 |
1.91e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 282 ETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLdeRLQELEKIKDLHMAEKTKLITQLRDAKNLIEQ---- 357
Cdd:TIGR00618 215 DTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQL--KKQQLLKQLRARIEELRAQEAVLEETQERINRarka 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 358 ----LEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKL 433
Cdd:TIGR00618 293 aplaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 434 KAEMDEQ----IKTIEKTSEEERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLHekelARKEQELTKKLQTREREF-- 507
Cdd:TIGR00618 373 QQHTLTQhihtLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH----AKKQQELQQRYAELCAAAit 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 508 -QEQMKVALEKSQSEYLKISQEKEQQESLALEELElQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQ 586
Cdd:TIGR00618 449 cTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL-QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 587 SKDLAVHLEaeknkhnkeitvmVEKHKTELESLKHQQDALwTEKLQVLKQQYQTEMEKLREKCEQEKET-----LLKDKE 661
Cdd:TIGR00618 528 RRMQRGEQT-------------YAQLETSEEDVYHQLTSE-RKQRASLKEQMQEIQQSFSILTQCDNRSkedipNLQNIT 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 662 IIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKnHHQQQVDSIIK 741
Cdd:TIGR00618 594 VRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR-EHALSIRVLPK 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 742 EHEVSIQRTEKALKDQINQLELLLKE-RDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQ 820
Cdd:TIGR00618 673 ELLASRQLALQKMQSEKEQLTYWKEMlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQA 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 821 LAQLQQKLLDLETERILLTKQVaEVEAQKKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQE 900
Cdd:TIGR00618 753 RTVLKARTEAHFNNNEEVTAAL-QTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 6715600 901 QTKQILVEKENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKM 956
Cdd:TIGR00618 832 QFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQ 887
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
558-1210 |
1.94e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 558 LQQEAETYRTRILEL-------------ESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKTELESLKHQQD 624
Cdd:pfam12128 246 LQQEFNTLESAELRLshlhfgyksdetlIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELE 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 625 ALWTEKLQVLKQQYQTEmeklreKCEQEKETLlkdkeiiFQAHIEEMNEKtLEKLDVKQteLESLSSELSEVLKARHKLE 704
Cdd:pfam12128 326 ALEDQHGAFLDADIETA------AADQEQLPS-------WQSELENLEER-LKALTGKH--QDVTAKYNRRRSKIKEQNN 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 705 EELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSIIKEHEVSIQRTEKA----------LKDQINQL----ELLLKERDK 770
Cdd:pfam12128 390 RDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEeyrlksrlgeLKLRLNQAtatpELLLQLENF 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 771 -----HLKEHQ----AHVENLEADIKRSEG-------ELQQASAKLDVFQSYQSATHEQTKA---------YEEQLAQLQ 825
Cdd:pfam12128 470 derieRAREEQeaanAEVERLQSELRQARKrrdqaseALRQASRRLEERQSALDELELQLFPqagtllhflRKEAPDWEQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 826 QKLLDLETERILLTKQVAEV-EAQKKDVCT----ELDAHKIQVQDLMQqlekqnseMEQKVKSLTQVYESKLEDGNKEQE 900
Cdd:pfam12128 550 SIGKVISPELLHRTDLDPEVwDGSVGGELNlygvKLDLKRIDVPEWAA--------SEEELRERLDKAEEALQSAREKQA 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 901 QTKQILVEKENmilQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKAKEMQ--ETLKKKLLDQE 978
Cdd:pfam12128 622 AAEEQLVQANG---ELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNslEAQLKQLDKKH 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 979 AKLKKELENTALELSQKEKQFNAKMLEMAQANSAGISDAVSRLETNQKEQIESLTEVHRRELN--DVISIWEKKLNQQAE 1056
Cdd:pfam12128 699 QAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLAslGVDPDVIAKLKREIR 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1057 ELQEIHEiQLQEKEQEVAELKQkillfgCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNS-LAQDETKLKAh 1135
Cdd:pfam12128 779 TLERKIE-RIAVRRQEVLRYFD------WYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLrRAKLEMERKA- 850
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 1136 LEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSeLTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLS 1210
Cdd:pfam12128 851 SEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGS-IGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHS 924
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
348-819 |
2.04e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 348 LRDAKNLIEQLEQDkgmvIAETK-RQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSE---------RAAFEELE 417
Cdd:PRK02224 182 LSDQRGSLDQLKAQ----IEEKEeKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADevleeheerREELETLE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 418 KALSTAQKTEEARRKLKAEMDEQIKTIEKTSEE-------------------ERISLQQE-LSRVKQEVVDVMkksseEQ 477
Cdd:PRK02224 258 AEIEDLRETIAETEREREELAEEVRDLRERLEEleeerddllaeaglddadaEAVEARREeLEDRDEELRDRL-----EE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 478 IAKLQKLHEKElARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKK-----AILTESE 552
Cdd:PRK02224 333 CRVAAQAHNEE-AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 553 NKLRDLQQEAETYRTRILELESSLeKSLQENKNQSKDLavhLEA----------EKNKHNKEIT---VMVEKHKTELESL 619
Cdd:PRK02224 412 DFLEELREERDELREREAELEATL-RTARERVEEAEAL---LEAgkcpecgqpvEGSPHVETIEedrERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 620 KHQQDALwTEKLQVLKQQYQTE--MEKLREKCEQEKEtLLKDKEiifqAHIEEMNEKTLEKLDVKQTELESLSSELSEVL 697
Cdd:PRK02224 488 EEEVEEV-EERLERAEDLVEAEdrIERLEERREDLEE-LIAERR----ETIEEKRERAEELRERAAELEAEAEEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 698 KARHKLEEELSVLKdqtdkmkqELEAKMDEQKNHHQQ--QVDSIIKEHEVSIQRTEKaLKDQINQLELLLKERDKHLKEH 775
Cdd:PRK02224 562 EAEEEAEEAREEVA--------ELNSKLAELKERIESleRIRTLLAAIADAEDEIER-LREKREALAELNDERRERLAEK 632
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 6715600 776 QAHVENLEADIkrSEGELQQASAKLDVFQSYQSATHEQTKAYEE 819
Cdd:PRK02224 633 RERKRELEAEF--DEARIEEAREDKERAEEYLEQVEEKLDELRE 674
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
346-499 |
3.44e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.84 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 346 TQLRDAKNLIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMttqgeelrEQKEKSERAAFEELekalstaqk 425
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEAL--------KARWEAEKELIEEI--------- 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 426 teearRKLKAEMDEQ---IKTIEKTSEEERISLQQELSRVKQEVvdvmkksSEEQIAK---------LQKLHEKE---LA 490
Cdd:COG0542 474 -----QELKEELEQRygkIPELEKELAELEEELAELAPLLREEV-------TEEDIAEvvsrwtgipVGKLLEGErekLL 541
|
....*....
gi 6715600 491 RKEQELTKK 499
Cdd:COG0542 542 NLEEELHER 550
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1046-1176 |
3.94e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.54 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1046 IWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGceKEEMNKEITWLKEEGVKQDTTLNELQEQLKQKSAHVNSL 1125
Cdd:PRK12704 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEA--KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRK 101
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 6715600 1126 AQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTS 1176
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA 152
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
613-1660 |
4.13e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 613 KTELESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNeKTLEKLDVKQTELESLSSE 692
Cdd:TIGR01612 695 KAKLDDLKSKIDKEYDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLN-KILEDFKNKEKELSNKIND 773
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 693 LSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQQVDSI----IKEHEVSIQRTE-KALKDQI-NQLELLLK 766
Cdd:TIGR01612 774 YAKEKDELNKYKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIktisIKEDEIFKIINEmKFMKDDFlNKVDKFIN 853
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 767 ERDKHLKEHQAHVENLEADIKRSEGEL--QQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILL-TKQVA 843
Cdd:TIGR01612 854 FENNCKEKIDSEHEQFAELTNKIKAEIsdDKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLKKVDEYIKICEnTKESI 933
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 844 EVEAQKKDVCTELDAHKIQVQDLMQQLEK------QNSEMEQKV---KSLTQVYESKLEDGNKEQEQTKQILVE-----K 909
Cdd:TIGR01612 934 EKFHNKQNILKEILNKNIDTIKESNLIEKsykdkfDNTLIDKINeldKAFKDASLNDYEAKNNELIKYFNDLKAnlgknK 1013
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 910 ENMILQMREGQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKAKEmqetlkkkLLDQEAKLKKELENTA 989
Cdd:TIGR01612 1014 ENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIGKNIE--------LLNKEILEEAEINITN 1085
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 990 L-ELSQKEKQFN----AKMLEMAQANSAG-ISDAVSRLETNQKEQIESLTEVHRRELNDVisiweKKLNQQAEELQEIHE 1063
Cdd:TIGR01612 1086 FnEIKEKLKHYNfddfGKEENIKYADEINkIKDDIKNLDQKIDHHIKALEEIKKKSENYI-----DEIKAQINDLEDVAD 1160
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1064 IQLQEKEQEVAELKQKILLFGCEK-----EEMNKEITWLKEEGvKQDTTLNELQEQLKQKSAHVNSL---AQDETKLKAH 1135
Cdd:TIGR01612 1161 KAISNDDPEEIEKKIENIVTKIDKkkniyDEIKKLLNEIAEIE-KDKTSLEEVKGINLSYGKNLGKLfleKIDEEKKKSE 1239
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1136 -----LEKLEVDLNKSLKentflQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLS 1210
Cdd:TIGR01612 1240 hmikaMEAYIEDLDEIKE-----KSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDF 1314
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1211 EELAIQLDICCKKTEALLEAKTNelinisSSKTNAILSRISHCQHrttkvkealLIKTCTVSELEAQLRQLTEEQNTLNi 1290
Cdd:TIGR01612 1315 SEESDINDIKKELQKNLLDAQKH------NSDINLYLNEIANIYN---------ILKLNKIKKIIDEVKEYTKEIEENN- 1378
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1291 sfQQATHQLEEKENQIKSMKADIeslvtekealqkeggNQQQAASEKESCITQlkKELSENINAVTLMKEELKEKKVEIS 1370
Cdd:TIGR01612 1379 --KNIKDELDKSEKLIKKIKDDI---------------NLEECKSKIESTLDD--KDIDECIKKIKELKNHILSEESNID 1439
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1371 SLSKQLTDLNvqlqNSISLSEKEAAISSLRKQYDEeKCELLDQVQDLSFKVDTLsKEKISALEQVDDWSNKFSEWKKKAQ 1450
Cdd:TIGR01612 1440 TYFKNADENN----ENVLLLFKNIEMADNKSQHIL-KIKKDNATNDHDFNINEL-KEHIDKSKGCKDEADKNAKAIEKNK 1513
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1451 SRFTQHQNTVKEL---QIQLELKSKEAYEKDEQINLLKEELDQQNKRFdcLKGEMEDDKSKMEKKEsnlETELKSQTARI 1527
Cdd:TIGR01612 1514 ELFEQYKKDVTELlnkYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFI--LEAEKSEQKIKEIKKE---KFRIEDDAAKN 1588
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1528 MELEDHITQKTIEIESL-NEVLKNYNQQKDI-----EHKELVQKLQHFQElgEEKDNRVKEAEEKILTLENQVYSMKAE- 1600
Cdd:TIGR01612 1589 DKSNKAAIDIQLSLENFeNKFLKISDIKKKIndclkETESIEKKISSFSI--DSQDTELKENGDNLNSLQEFLESLKDQk 1666
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6715600 1601 --LETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQME 1660
Cdd:TIGR01612 1667 knIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIE 1728
|
|
| Macoilin |
pfam09726 |
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 ... |
849-1080 |
5.15e-04 |
|
Macoilin family; The Macoilin proteins has an N-terminal portion that is composed of 5 trasnmembrane helices, followed by a C-terminal coiled-coil region. Macoilin is a highly conserved protein present in eukaryotes. Macoilin appears to be found in the ER and be involved in the function of neurons.
Pssm-ID: 462859 [Multi-domain] Cd Length: 670 Bit Score: 45.23 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 849 KKDVCTELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYES-KLEDGNKEQEQtkQILVEKENMILQMREGQKKEIEIL 927
Cdd:pfam09726 393 KPDALVRLEQDIKKLKAELQASRQTEQELRSQISSLTSLERSlKSELGQLRQEN--DLLQTKLHNAVSAKQKDKQTVQQL 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 928 TQKLSAKEDSI----HILNEEYETKFKNQEKKMEKVKQKA---KEMQETLKKKLLDQEAKLKK-------------ELEN 987
Cdd:pfam09726 471 EKRLKAEQEARasaeKQLAEEKKRKKEEEATAARAVALAAasrGECTESLKQRKRELESEIKKlthdiklkeeqirELEI 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 988 TALELSQKEKqfNAKMLEMAQANSAGISDAVSRLEtnqkeqiESLTEVHRRELnDVISiwekKLNQQAEELqEIHEIQLQ 1067
Cdd:pfam09726 551 KVQELRKYKE--SEKDTEVLMSALSAMQDKNQHLE-------NSLSAETRIKL-DLFS----ALGDAKRQL-EIAQGQIY 615
|
250
....*....|...
gi 6715600 1068 EKEQEVAELKQKI 1080
Cdd:pfam09726 616 QKDQEIKDLKQKI 628
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
954-1701 |
5.36e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 954 KKMEKVKQKAKEMQETL--KKKLLDQEAKLKKELENTALELSQKEKQfnakmLEMAQANSAGISDAVSRLETNQKEQies 1031
Cdd:TIGR00606 210 KYLKQYKEKACEIRDQItsKEAQLESSREIVKSYENELDPLKNRLKE-----IEHNLSKIMKLDNEIKALKSRKKQM--- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1032 ltEVHRRELNDVISIWEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKEEMNKEITWLKEEGVKQDTTLNEL 1111
Cdd:TIGR00606 282 --EKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRH 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1112 QEQLKQKSAHVNSLAqdetkLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSS 1191
Cdd:TIGR00606 360 QEHIRARDSLIQSLA-----TRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1192 HEKSNKSLEDKSLEFKKLSEELAI------QLDICCKKTEALLEAKTNELINISSSKTNAILSRISHCQHRTTKVKEALL 1265
Cdd:TIGR00606 435 KKGLGRTIELKKEILEKKQEELKFvikelqQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1266 IKTCTVSELEAQLRQLTEEQNTLnisfQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLK 1345
Cdd:TIGR00606 515 RKLRKLDQEMEQLNHHTTTRTQM----EMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTR 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1346 KELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCEL-------------LD 1412
Cdd:TIGR00606 591 DRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRamlagatavysqfIT 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1413 QVQDLSFKVDTLSKEKISALEQVDDWSNKFSEWKKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQN 1492
Cdd:TIGR00606 671 QLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELR 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1493 KRFDCLKGEMEDDKSKMEKKESNLETELKSQTA----------------RIMELEDHITQKTIEIESLN-----EVLKNY 1551
Cdd:TIGR00606 751 NKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESakvcltdvtimerfqmELKDVERKIAQQAAKLQGSDldrtvQQVNQE 830
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1552 NQQKDIEHKELVQKLQHFQELGEE----------KDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEE 1621
Cdd:TIGR00606 831 KQEKQHELDTVVSKIELNRKLIQDqqeqiqhlksKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1622 LKALEDRLE------SESAAKLAELKRKAEQKIAAIK----------KQLLSQMEEKEEQYKKGTESHLSELNTKLQERE 1685
Cdd:TIGR00606 911 DSPLETFLEkdqqekEELISSKETSNKKAQDKVNDIKekvknihgymKDIENKIQDGKDDYLKQKETELNTVNAQLEECE 990
|
810
....*....|....*.
gi 6715600 1686 REVHILEEKLKSVESS 1701
Cdd:TIGR00606 991 KHQEKINEDMRLMRQD 1006
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
276-660 |
5.93e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 5.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 276 TSVKTLETLQQRVKRQENL---LKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKDLHMAEKTKLITQLRDAK 352
Cdd:PRK02224 231 QARETRDEADEVLEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 353 NLIEQLE--QDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKekseraafEELEKALSTAQKTEEAR 430
Cdd:PRK02224 311 AVEARREelEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEA--------AELESELEEAREAVEDR 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 431 RKLKAEMDEQIKTIEKT----------SEEERISLQQELSRVKQEVVDVMK--KSSEEQIAKLQKLHEkelARKEQELTK 498
Cdd:PRK02224 383 REEIEELEEEIEELRERfgdapvdlgnAEDFLEELREERDELREREAELEAtlRTARERVEEAEALLE---AGKCPECGQ 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 499 KLQTRER-EFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTES-ENKLRDLQQEAETYRTRILELESSL 576
Cdd:PRK02224 460 PVEGSPHvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERlEERREDLEELIAERRETIEEKRERA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 577 EkSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEKHKT---ELESLKHQQDALWT-EKLQVLKQQYQTEMEKLREKCEQ- 651
Cdd:PRK02224 540 E-ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAElnsKLAELKERIESLERiRTLLAAIADAEDEIERLREKREAl 618
|
410
....*....|
gi 6715600 652 -EKETLLKDK 660
Cdd:PRK02224 619 aELNDERRER 628
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
313-510 |
6.17e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 6.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 313 TSEKEALQEQLDE---RLQELEKIKDLHMAEKTKLITQLRDAKNLIEQLEQDkgmvIAETKRQMHETlemkEEEIAQLRS 389
Cdd:COG4942 19 ADAAAEAEAELEQlqqEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAAL----EAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 390 RIKQMTTQGEELREQKEKSERAA-----------------FEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEE-- 450
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEle 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6715600 451 -----------ERISLQQELSRVKQEVVDVMKKSSEEQIAKLQKLheKELARKEQELTKKLQTREREFQEQ 510
Cdd:COG4942 171 aeraeleallaELEEERAALEALKAERQKLLARLEKELAELAAEL--AELQQEAEELEALIARLEAEAAAA 239
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
354-514 |
6.66e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 354 LIEQLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQ-KEKSERAafEELEKALSTAQKteEARRK 432
Cdd:COG2433 385 LIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAElEEKDERI--ERLERELSEARS--EERRE 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 433 LKaemdeqiKTIEKTSEEERIS-LQQELSRVKQEVvdvmkKSSEEQIAKLQKLHEKElARKEQELTKKLQ--TRE--REF 507
Cdd:COG2433 461 IR-------KDREISRLDREIErLERELEEERERI-----EELKRKLERLKELWKLE-HSGELVPVKVVEkfTKEaiRRL 527
|
....*..
gi 6715600 508 QEQMKVA 514
Cdd:COG2433 528 EEEYGLK 534
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1394-2021 |
7.70e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1394 AAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVddwsnkFSEWKKKAQSRFTQHQNTVKELQIQLELKSKE 1473
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSARSQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1474 AYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEkkeSNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQ 1553
Cdd:pfam15921 294 ANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLR---SELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1554 qkdiEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESES 1633
Cdd:pfam15921 371 ----ESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1634 AAKLAELKRKAE--QKIAAIKKQLLSQMEE-----KEEQYKKGT----ESHLSELNTKLQEREREVHILEEKLKSVESSQ 1702
Cdd:pfam15921 447 ERQMAAIQGKNEslEKVSSLTAQLESTKEMlrkvvEELTAKKMTlessERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1703 SETLIVPRSAKNVAAYTEQEEADSQGcVQKTYEEKISVLQRNLTEKEKLLQRVGQ----------EKEETVSSHFEMRCQ 1772
Cdd:pfam15921 527 DLKLQELQHLKNEGDHLRNVQTECEA-LKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagamqvEKAQLEKEINDRRLE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1773 YQERLIKLEHAEAKQHEDQSMIGHLQEEleeknkKYSLIVAQHVEKEGGKNNIQAKQNL----ENVFDDVQKTLQEKELT 1848
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDLELE------KVKLVNAGSERLRAVKDIKQERDQLlnevKTSRNELNSLSEDYEVL 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1849 CQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLQALQQMDGRNKPTELLEENTEEKSKSHLvqpkllSNMEAQHNDL 1928
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQI------DALQSKIQFL 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1929 EFKLAGAEREKQKLGKEIVRLQKDLRMLRKEHQQ---ELEILKKEydqerEEKIKQEQEDLELKHNSTLKQLMREFNTQL 2005
Cdd:pfam15921 754 EEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKmagELEVLRSQ-----ERRLKEKVANMEVALDKASLQFAECQDIIQ 828
|
650
....*....|....*.
gi 6715600 2006 AQKEQELEMTIKETIN 2021
Cdd:pfam15921 829 RQEQESVRLKLQHTLD 844
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
698-886 |
7.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 698 KARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQqvdsiIKEHEVSIQRTEKALKD---QINQLELLLKERDKHLKE 774
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ-----LAALERRIAALARRIRAleqELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 775 HQAHVENLEADIKR------------------SEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERI 836
Cdd:COG4942 95 LRAELEAQKEELAEllralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 6715600 837 LLTKQVAEVEAQKKdvctELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQ 886
Cdd:COG4942 175 ELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1542-1694 |
8.09e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.46 E-value: 8.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1542 ESLNEVLKnynqqkDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVysmkAELETKKKELEHvnlSVKSKEEE 1621
Cdd:COG2433 376 LSIEEALE------ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQV----ERLEAEVEELEA---ELEEKDER 442
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6715600 1622 LKALEDRLESESAAKLAELKRKAE-QKIAAIKKQLLSQMEEKEEqykkgtesHLSELNTKLqEREREVHILEEK 1694
Cdd:COG2433 443 IERLERELSEARSEERREIRKDREiSRLDREIERLERELEEERE--------RIEELKRKL-ERLKELWKLEHS 507
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1110-1353 |
1.06e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.23 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1110 ELQEQLKQKSAHVNSLaqdETKLKAHlEKLEVDLNKSLKEN-TFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSL 1188
Cdd:PHA02562 178 ELNQQIQTLDMKIDHI---QQQIKTY-NKNIEEQRKKNGENiARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1189 KSSHEKSNKSLEDKSLEFKKLSEELAIQLD--ICCKKTEALLEakTNELINisssktnAILSRISHCQHRTTKVKEAlli 1266
Cdd:PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYEKggVCPTCTQQISE--GPDRIT-------KIKDKLKELQHSLEKLDTA--- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1267 ktctVSELEAQLRQLTEEQNTLNisfqqathqleEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKK 1346
Cdd:PHA02562 322 ----IDELEEIMDEFNEQSKKLL-----------ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386
|
....*..
gi 6715600 1347 ELSENIN 1353
Cdd:PHA02562 387 ELDKIVK 393
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1471-1704 |
1.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1471 SKEAYEKDEQINLLKEELDQQNKRFDCLKGE---MEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTIEIESLnev 1547
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEekaLLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1548 lknyNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAEEKILTLENQVYSMKAELETKKKELEhvnlSVKSKEEELKALED 1627
Cdd:COG4942 96 ----RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE----ELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6715600 1628 RLESESAAKLAELKRKAEQkiaaiKKQLLSQMEEKEEQYKKgTESHLSELNTKLQEREREVHILEEKLKSVESSQSE 1704
Cdd:COG4942 168 ELEAERAELEALLAELEEE-----RAALEALKAERQKLLAR-LEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1131-1989 |
1.59e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1131 KLKAHLEKLEVDLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEfKKLS 1210
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE-LLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1211 EELAIQLDICCKKTEALLEAKTNELINISSSKTNAILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNI 1290
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1291 SFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEKKVEIS 1370
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1371 S---LSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVDDwSNKFSEWKK 1447
Cdd:pfam02463 409 LlleLARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ-LVKLQEQLE 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1448 KAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTA-- 1525
Cdd:pfam02463 488 LLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKlv 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1526 RIMELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKDNRVKEAE------EKILTLENQVYSMKA 1599
Cdd:pfam02463 568 RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEgilkdtELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1600 ELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNT 1679
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRV 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1680 KLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQEEADSQGCVQKTYEEKisvlQRNLTEKEKLLQRVGQEK 1759
Cdd:pfam02463 728 QEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK----LKVEEEKEEKLKAQEEEL 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1760 EETVSSHFEMRCQYQERLIKLEHAEAKQHEDQSMigHLQEELEEKNKKYSLIVAQHVEKEGGKNNIQAKQNLENVFDDVQ 1839
Cdd:pfam02463 804 RALEEELKEEAELLEEEQLLIEQEEKIKEEELEE--LALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1840 KTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLQALQQMDGRnkptelleenteEKSKSHLVQPKLLS 1919
Cdd:pfam02463 882 QKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEE------------EPEELLLEEADEKE 949
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1920 NMEAQHNDLEFKLAGAEREKQKLGKEIVRLqkDLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLELK 1989
Cdd:pfam02463 950 KEENNKEEEEERNKRLLLAKEELGKVNLMA--IEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQ 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1958-2141 |
1.70e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1958 KEHQQELEILKKEYDQEREEKIKQEQEDLELKHNStLKQLMREFNTQLAQKEQELEmtikETINKAQEVEAELLESHQEE 2037
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEE-LEAELEELEAELAELEAELE----ELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2038 tNQLLKKIAEKDDDLKRTAKRYEEiLDAREEEMTAKVRDLQTQLEELQKKYQQKLEQEEnpgndnvtimELQTQLAQKTT 2117
Cdd:COG1196 291 -YELLAELARLEQDIARLEERRRE-LEERLEELEEELAELEEELEELEEELEELEEELE----------EAEEELEEAEA 358
|
170 180
....*....|....*....|....
gi 6715600 2118 LISDSKLKEQEFREQIHNLEDRLK 2141
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELE 382
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
754-1350 |
1.89e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 754 LKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQ---SATHEQTKAYEEQLAQLQQKLLD 830
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALnelSSLEDMKNRYESEIKTAESDLSM 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 831 LETERILLTKQVAEVEAQKKDVCTELDAHKIQVQDLMQQLEKQnSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKE 910
Cdd:PRK01156 268 ELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENK-KQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKS 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 911 nmilqmregQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKAKEMQETLKKKLLDQEA--KLKKELENT 988
Cdd:PRK01156 347 ---------RYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAikKELNEINVK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 989 ALELSQKEKQFNAKMLEMAQaNSAGISDAVSRLETNQKEQIESlTEVHRRELNDVISIWEKKLNQQAEELQEIhEIQLQE 1068
Cdd:PRK01156 418 LQDISSKVSSLNQRIRALRE-NLDELSRNMEMLNGQSVCPVCG-TTLGEEKSNHIINHYNEKKSRLEEKIREI-EIEVKD 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1069 KEQEVAELKQkiLLFGCEKEEMNKEITwlkeegvkQDTTLNELQEQLKQKSAHVNSLAQDETKLKA--------HLEKLE 1140
Cdd:PRK01156 495 IDEKIVDLKK--RKEYLESEEINKSIN--------EYNKIESARADLEDIKIKINELKDKHDKYEEiknrykslKLEDLD 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1141 VDLNKSLKENTFLQEQLVE-LKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEF---KKLSEELAIQ 1216
Cdd:PRK01156 565 SKRTSWLNALAVISLIDIEtNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLnnkYNEIQENKIL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1217 LDICCKKTEALLEaKTNELINISSSKtNAILSRISHCQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTLNISFQQAT 1296
Cdd:PRK01156 645 IEKLRGKIDNYKK-QIAEIDSIIPDL-KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDIN 722
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 6715600 1297 HQLEEKenqiKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLKKELSE 1350
Cdd:PRK01156 723 ETLESM----KKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTSLTRKYLFE 772
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
314-451 |
2.29e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 314 SEKEALQEQLDERLQELEKIKDLhmaeKTKLITQLRDAKNLIEQLEQdKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQ 393
Cdd:PRK12704 47 AKKEAEAIKKEALLEAKEEIHKL----RNEFEKELRERRNELQKLEK-RLLQKEENLDRKLELLEKREEELEKKEKELEQ 121
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6715600 394 MTTQGEELREQKEKSERAAFEELEK--ALSTAQKT----EEARRKLKAEMDEQIKTIEKTSEEE 451
Cdd:PRK12704 122 KQQELEKKEEELEELIEEQLQELERisGLTAEEAKeillEKVEEEARHEAAVLIKEIEEEAKEE 185
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
137-388 |
2.49e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 137 EQLIQRLRRMERSLSSYRGKYSELVTAYQMLQREKKKLQGILSQSQ---DKSL-RRIAELREELQMDQQAKKHLQeEFDA 212
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANllaDETLaDRLEELREELDAAQEAQAFIQ-QHGK 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 213 SLEEKDQYISVLQT---QVSLLKQRLRNGPMNVDVLKplPQLEPQAEVFTKEENPESDGEPVVEDGTSVKTlETLQQRVK 289
Cdd:COG3096 918 ALAQLEPLVAVLQSdpeQFEQLQADYLQAKEQQRRLK--QQIFALSEVVQRRPHFSYEDAVGLLGENSDLN-EKLRARLE 994
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 290 RQENLLKRCKETIQSHKEQC-------TLLTSEKEALQEQLDERLQELEKIK---DLHMAEKTK-----LITQLRDAKNL 354
Cdd:COG3096 995 QAEEARREAREQLRQAQAQYsqynqvlASLKSSRDAKQQTLQELEQELEELGvqaDAEAEERARirrdeLHEELSQNRSR 1074
|
250 260 270
....*....|....*....|....*....|....
gi 6715600 355 IEQLEQDKGMVIAETKrQMHETLEMKEEEIAQLR 388
Cdd:COG3096 1075 RSQLEKQLTRCEAEMD-SLQKRLRKAERDYKQER 1107
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1108-1699 |
2.61e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1108 LNELQEQLKQKSAHVNSLAQDETKLKAHLEKLEVDLNKSLKENTFLQEQLVELkmlaEEDKRKVSELTSKLKTTDEEFQS 1187
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPEL----REELEKLEKEVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1188 LK---SSHEKSNKSLEDKSLEFKKLSEELaiqldiccKKTEALLEAKTNELINISSSKTNAIlsRISHCQHRTTKVKEAL 1264
Cdd:PRK03918 243 LEkelESLEGSKRKLEEKIRELEERIEEL--------KKEIEELEEKVKELKELKEKAEEYI--KLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1265 LIKTCTVSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLvteKEALQKEGGNQQQAASEKESCITQL 1344
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY---EEAKAKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1345 KKELSENINAVTLMKEELKEKKVEISSLSKQLTDLNvqlQNSISLSEKEAAISSLRKQYDEEkcELLDQVQDLSFKVDTL 1424
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELK---KAIEELKKAKGKCPVCGRELTEE--HRKELLEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1425 SKEKISALEQVDDWSNKFSEWKK--KAQSRFTQHQNTVKELqiqlelksKEAYEKDEQINLlkEELDQQNKRFDCLKGEM 1502
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKvlKKESELIKLKELAEQL--------KELEEKLKKYNL--EELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1503 eddkSKMEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIEHKELVQKLQHFQELGEEKdNRVKE 1582
Cdd:PRK03918 535 ----IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEY-LELKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1583 AEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQlLSQMEEK 1662
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAE-LEELEKR 688
|
570 580 590
....*....|....*....|....*....|....*..
gi 6715600 1663 EEQYKKGTEShLSELNTKLQEREREVHILEEKLKSVE 1699
Cdd:PRK03918 689 REEIKKTLEK-LKEELEEREKAKKELEKLEKALERVE 724
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1918-2094 |
2.66e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1918 LSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEHQQELEILKKE----YDQEREEKIK----QEQEDLELK 1989
Cdd:COG4942 57 LAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlralYRLGRQPPLAlllsPEDFLDAVR 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1990 HNSTLKQLMREFNTQLAQKEQELEM--TIKETINKAQEVEAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEiLDARE 2067
Cdd:COG4942 137 RLQYLKYLAPARREQAEELRADLAElaALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAE-LAAEL 215
|
170 180
....*....|....*....|....*..
gi 6715600 2068 EEMTAKVRDLQTQLEELQKKYQQKLEQ 2094
Cdd:COG4942 216 AELQQEAEELEALIARLEAEAAAAAER 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1507-2147 |
2.97e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1507 SKMEKKESNLETELKSQTARIMELEDHItqKTIEIESLNEVLKNYNQQKDiehkelvqklqHFQELGEEKDNRVKEAEEK 1586
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQL--EALKSESQNKIELLLQQHQD-----------RIEQLISEHEVEITGLTEK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1587 ILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESEsaakLAELKRKAEQKIAAIKKQL-LSQMEEKEEQ 1665
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE----LREAKRMYEDKIEELEKQLvLANSELTEAR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1666 YKKGTESHLS-ELNTKLQEREREVHILEEKLkSVESSQSETLIVPRSAKNVAAYTEQEEADSQGCVQKTYEEKISVLQ-- 1742
Cdd:pfam15921 363 TERDQFSQESgNLDDQLQKLLADLHKREKEL-SLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKse 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1743 -RNLTEKEKLLQRVGQEKEETVSSHFEMRCQYQERLIKL-EHAEAKQ---HEDQSMIGHLQEELEEKNKKyslIVAQHVE 1817
Cdd:pfam15921 442 cQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVvEELTAKKmtlESSERTVSDLTASLQEKERA---IEATNAE 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1818 KEGGKNNIQAKQNLENVFDDVQKTLQEKELTCQILEQKIKELDSCLvrqkevhrvemEELTSKYEKLQALQQMDGRNKPT 1897
Cdd:pfam15921 519 ITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVI-----------EILRQQIENMTQLVGQHGRTAGA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1898 ELLEENTEEKS----KSHLVQPKLLSNM-EAQHNDLEFKLAGAEREKQKL---GKEIVRLQKDLRMLRKEHQQELEILKK 1969
Cdd:pfam15921 588 MQVEKAQLEKEindrRLELQEFKILKDKkDAKIRELEARVSDLELEKVKLvnaGSERLRAVKDIKQERDQLLNEVKTSRN 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1970 EYDQEREEkikqeqedlelkhnstLKQLMREFNtqlaQKEQELEMTIKETINKAQEVEAELleshqEETNQLLKKIAEKD 2049
Cdd:pfam15921 668 ELNSLSED----------------YEVLKRNFR----NKSEEMETTTNKLKMQLKSAQSEL-----EQTRNTLKSMEGSD 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2050 DDLKRTAKryeeildAREEEMTAKvrdlQTQLEELQKKYQQKLEQEENPGNDNVTIMELQTQLAQKTTLISDSKLKEQEF 2129
Cdd:pfam15921 723 GHAMKVAM-------GMQKQITAK----RGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
650
....*....|....*...
gi 6715600 2130 REQIHNLEDRLKKYEKNV 2147
Cdd:pfam15921 792 LEVLRSQERRLKEKVANM 809
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1487-1658 |
3.11e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1487 ELDQQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDiehkeLVQKL 1566
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-----NVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1567 QHFQELGEEKDNrvkeAEEKILTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESA---AKLAELKRK 1643
Cdd:COG1579 89 KEYEALQKEIES----LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAeleAELEELEAE 164
|
170
....*....|....*
gi 6715600 1644 AEQKIAAIKKQLLSQ 1658
Cdd:COG1579 165 REELAAKIPPELLAL 179
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
764-1188 |
3.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 764 LLKERDKHLKEHQAHVENLEADIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERIL-----L 838
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLlqllpL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 839 TKQVAEVEAQKKDVCTELDAHKIQVQDLmQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMILQMRE 918
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 919 GQKKEIEILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVKQKA-------KEMQETLKKKLLDQEAKLKKELENTALE 991
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaaallalLGLGGSLLSLILTIAGVLFLVLGLLALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 992 LSQKEKQFNAKMLEMAQANSAGISDAVSRLE-TNQKEQIESLTEVHRRELNDVISIWEKKLNQQAEELQEIHEIQLQEKE 1070
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1071 QEVAELKQKillFGCEKEEMNKEITWLKEEGVKQDTTLNELQEQLKQ--KSAHVNSLAQDETKLKAHLEKLEVDLNKSLK 1148
Cdd:COG4717 370 QEIAALLAE---AGVEDEEELRAALEQAEEYQELKEELEELEEQLEEllGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 6715600 1149 ENTFLQEQLVELK--MLAEEDKRKVSELTSKLKTTDEEFQSL 1188
Cdd:COG4717 447 ELEELREELAELEaeLEQLEEDGELAELLQELEELKAELREL 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
279-482 |
3.70e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 279 KTLETLQQRVKRQENLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERLQELEKIKD----LHMAEKTKLITQLRDAKNL 354
Cdd:COG4942 55 KQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRalyrLGRQPPLALLLSPEDFLDA 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 355 IEQLEQDKGmvIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERaafeELEKALSTAQKTEEARRKLK 434
Cdd:COG4942 135 VRRLQYLKY--LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA----ALEALKAERQKLLARLEKEL 208
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 6715600 435 AEMDEQIKTIEKtseeERISLQQELSRVKQEVVDVMKKSSEEQIAKLQ 482
Cdd:COG4942 209 AELAAELAELQQ----EAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
903-1071 |
4.42e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 903 KQILVEKENMILQMREGQKKEIEILTQK--LSAKEDsIHILNEEYETKFKNQEKKMEKVKQKAKEMQETLKKKLLDQEaK 980
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEalLEAKEE-IHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLE-K 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 981 LKKELENTALELSQKEKQFNAKMLEMAQAnsagISDAVSRLetnqkEQIESLTEVHRRELndVISIWEKKLNQQAEELqe 1060
Cdd:PRK12704 108 REEELEKKEKELEQKQQELEKKEEELEEL----IEEQLQEL-----ERISGLTAEEAKEI--LLEKVEEEARHEAAVL-- 174
|
170
....*....|.
gi 6715600 1061 IHEIQLQEKEQ 1071
Cdd:PRK12704 175 IKEIEEEAKEE 185
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
334-498 |
4.63e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 334 KDLHMAEKTKLITQLRDAKNLIEQLEQDKGMVIAetkrQMHETLEMKEEEiaqlRSRIKQMTTQGEELREQKEKseRAAf 413
Cdd:PRK09039 51 KDSALDRLNSQIAELADLLSLERQGNQDLQDSVA----NLRASLSAAEAE----RSRLQALLAELAGAGAAAEG--RAG- 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 414 eELEKALSTAQKT-EEARRKLkAEMDEQIKtiektseeeriSLQQELSRVkQEVVDVMKKSSEEQIAKLQKLHEK---EL 489
Cdd:PRK09039 120 -ELAQELDSEKQVsARALAQV-ELLNQQIA-----------ALRRQLAAL-EAALDASEKRDRESQAKIADLGRRlnvAL 185
|
....*....
gi 6715600 490 ARKEQELTK 498
Cdd:PRK09039 186 AQRVQELNR 194
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1510-1688 |
4.68e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1510 EKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQKDIE--HKELVQKLQHFQELgEEKDNRVKEAEEKI 1587
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVAsaEREIAELEAELERL-DASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1588 LTLENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKqllsqmEEKEEQYK 1667
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG------DAVERELR 768
|
170 180
....*....|....*....|.
gi 6715600 1668 KGTESHLSELNTKLQEREREV 1688
Cdd:COG4913 769 ENLEERIDALRARLNRAEEEL 789
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
140-532 |
5.22e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 140 IQRLRRMERSLSSY-RGKYSELVTAYQMLQREKKKLQGILSQ--SQDKSLRRIAELREELQMDQQAKKHLQEEFDASLEE 216
Cdd:pfam15921 428 VQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVSSLTAQleSTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 217 KDQYISVLQTQVSLLKQRlrngpmnVDV-LKPLPQLEPQAEVFtkeENPESDGEPV-VEDGTSVKTLETLQQRVKRQENL 294
Cdd:pfam15921 508 KERAIEATNAEITKLRSR-------VDLkLQELQHLKNEGDHL---RNVQTECEALkLQMAEKDKVIEILRQQIENMTQL 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 295 L---KRCKETIQSHKEQCT-------LLTSEKEALQEQLDERLQELE-KIKDLHMaEKTKLITQLRDAKNLIEQLEQDKG 363
Cdd:pfam15921 578 VgqhGRTAGAMQVEKAQLEkeindrrLELQEFKILKDKKDAKIRELEaRVSDLEL-EKVKLVNAGSERLRAVKDIKQERD 656
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 364 MVIAETKRQMHETLEMKEE-EIAQ--LRSRIKQMTTQGEELREQKeKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQ 440
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDyEVLKrnFRNKSEEMETTTNKLKMQL-KSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQ 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 441 IktiekTSEEERI-SLQQELSRVKQEVVDVMKKS---SEEQIAKLQKLH----EKELARKEQELTKKLQTREREFQEQMK 512
Cdd:pfam15921 736 I-----TAKRGQIdALQSKIQFLEEAMTNANKEKhflKEEKNKLSQELStvatEKNKMAGELEVLRSQERRLKEKVANME 810
|
410 420
....*....|....*....|...
gi 6715600 513 VALEKSQSEYLK---ISQEKEQQ 532
Cdd:pfam15921 811 VALDKASLQFAEcqdIIQRQEQE 833
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1922-2091 |
5.35e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1922 EAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRK-------------------EHQQELEILKKEYDQERE-----E 1977
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealqrlaeyswdeidvaSAEREIAELEAELERLDAssddlA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1978 KIKQEQEDLELKHNsTLKQLMREFNTQLAQKEQELEmTIKETINKAQEVEAELLESHQEETNQLL-KKIAEKDDDlkRTA 2056
Cdd:COG4913 689 ALEEQLEELEAELE-ELEEELDELKGEIGRLEKELE-QAEEELDELQDRLEAAEDLARLELRALLeERFAAALGD--AVE 764
|
170 180 190
....*....|....*....|....*....|....*
gi 6715600 2057 KRYEEILDAREEEMTAKVRDLQTQLEELQKKYQQK 2091
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
312-583 |
5.61e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.96 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 312 LTSEK-EALQEQLDERLQELEKIKdlhmaeKTKLITQ-LRDAKNLIEQLEQDKGMViaETKRQMHETLEMKEEEIaQLRS 389
Cdd:PTZ00108 1099 LTKEKvEKLNAELEKKEKELEKLK------NTTPKDMwLEDLDKFEEALEEQEEVE--EKEIAKEQRLKSKTKGK-ASKL 1169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 390 RIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEqiKTIEKTSEEERISLQQELSRVKQEVVDV 469
Cdd:PTZ00108 1170 RKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN--SSGSDQEDDEEQKTKPKKSSVKRLKSKK 1247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 470 MKKSSEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKSQ------SEYLKISQEKEQQESLALEELELQ 543
Cdd:PTZ00108 1248 NNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNggskpsSPTKKKVKKRLEGSLAALKKKKKS 1327
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 6715600 544 KKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQEN 583
Cdd:PTZ00108 1328 EKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSED 1367
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1478-1691 |
5.69e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.92 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1478 DEQINLLKEELDQQNKRFDCLKGEMEDDKSKMEKKESNLETELKSQTARIMELEDHITQKTIEIESLNEVLKNYNQQK-D 1556
Cdd:PHA02562 187 DMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAaK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1557 IEHK-ELVQKLQHFQELGEE---KDNRVKEAEEKIltlenqvysmkAELETKKKELEHVNLSVKSKEEELKALEDRLeSE 1632
Cdd:PHA02562 267 IKSKiEQFQKVIKMYEKGGVcptCTQQISEGPDRI-----------TKIKDKLKELQHSLEKLDTAIDELEEIMDEF-NE 334
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6715600 1633 SAAKLAELKRKAEQKIAAIK------KQLLSQMEEKEEQYK------KGTESHLSELNTKLQEREREVHIL 1691
Cdd:PHA02562 335 QSKKLLELKNKISTNKQSLItlvdkaKKVKAAIEELQAEFVdnaeelAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1962-2105 |
6.34e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 6.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1962 QELEILKKEYDQEREE--KIKQEQEDLELKhnstLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELLESHQEEtn 2039
Cdd:PRK00409 523 ASLEELERELEQKAEEaeALLKEAEKLKEE----LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQL-- 596
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 2040 QLLKKIAEKDDDLKRTAKRYEEILDAREEEMTAKVRDlQTQLEELQK----KYQQKLEQEENPGNDNVTI 2105
Cdd:PRK00409 597 QKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEK-QEELKVGDEvkylSLGQKGEVLSIPDDKEAIV 665
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
349-488 |
6.48e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 6.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 349 RDAKNLIEQLEQDKGMVIAETKRQMHEtleMKEEEIAQLRSRIKQMTTQGE-ELRE------QKEKSERAAFEELEKALS 421
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEA---IKKEALLEAKEEIHKLRNEFEkELRErrnelqKLEKRLLQKEENLDRKLE 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6715600 422 TAQKTEEARRKLKAEMDEQIKTIEKTSEE-ERISLQQ--ELSRV--------KQEVVDVMKKSSEEQIAKLQKLHEKE 488
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEElEELIEEQlqELERIsgltaeeaKEILLEKVEEEARHEAAVLIKEIEEE 181
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1633-1809 |
6.60e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1633 SAAKLAELKRKAEQKIA-------AIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKLKsvesSQSET 1705
Cdd:PRK12704 29 AEAKIKEAEEEAKRILEeakkeaeAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLD----RKLEL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1706 LivprSAKNVAAYTEQEEADSQgcvQKTYEEKISVLQRNLTEKEKLLQRV-GQEKEETvsshfemrcqyqeRLIKLEHAE 1784
Cdd:PRK12704 105 L----EKREEELEKKEKELEQK---QQELEKKEEELEELIEEQLQELERIsGLTAEEA-------------KEILLEKVE 164
|
170 180
....*....|....*....|....*.
gi 6715600 1785 AK-QHEDQSMIGHLQEELEEKNKKYS 1809
Cdd:PRK12704 165 EEaRHEAAVLIKEIEEEAKEEADKKA 190
|
|
| Nup88 |
pfam10168 |
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ... |
252-484 |
6.79e-03 |
|
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.
Pssm-ID: 462975 [Multi-domain] Cd Length: 713 Bit Score: 41.57 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 252 EPQAEVFTKEENPESDGEPVVEDGTS-VKTLETLQQRVKRQEnLLKRCKETIQSHKEQCTLLTSEKEALQEQLDERlqel 330
Cdd:pfam10168 477 PPSPPLLCSKEDVTVDEPLRGLQEDSfEDHIKSILQRSVSNP-ILSADKLSSPSPQECLQLLSRATQVFREEYLKK---- 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 331 ekiKDLHMAEKTKLITQLRDAKnliEQLEQDKGMVIAETK--RQMHETLEMKEEEIAQ----LRSRIKQMTTQGEELREQ 404
Cdd:pfam10168 552 ---HDLAREEIQKRVKLLKLQK---EQQLQELQSLEEERKslSERAEKLAEKYEEIKDkqekLMRRCKKVLQRLNSQLPV 625
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 405 KEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKTIEKTSEEER---ISLQQELSRVKQEVVDVMKKSSEEQIAKL 481
Cdd:pfam10168 626 LSDAEREMKKELETINEQLKHLANAIKQAKKKMNYQRYQIAKSQSIRKkssLSLSEKQRKTIKEILKQLGSEIDELIKQV 705
|
...
gi 6715600 482 QKL 484
Cdd:pfam10168 706 KDI 708
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
1936-2023 |
6.84e-03 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 39.82 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1936 EREKQKLGKEIVRLQKDLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDlelkhnstLKQLMREFNTQLAQKEQELEMT 2015
Cdd:COG2825 49 EKEFKKRQAELQKLEKELQALQEKLQKEAATLSEEERQKKERELQKKQQE--------LQRKQQEAQQDLQKRQQELLQP 120
|
....*...
gi 6715600 2016 IKETINKA 2023
Cdd:COG2825 121 ILEKIQKA 128
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1049-1643 |
6.88e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 6.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1049 KKLNQQAEELQEIHEIQLQEKEQEVAELkqkiLLFGCEKEEMNKEITWLKEEGVKQdttLNELQEQLKQKSAHVNSLAQD 1128
Cdd:pfam05483 218 KEDHEKIQHLEEEYKKEINDKEKQVSLL----LIQITEKENKMKDLTFLLEESRDK---ANQLEEKTKLQDENLKELIEK 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1129 ETKLKAHLEKLEVDLNKSLKENTFLQEQLvelkmlaEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKK 1208
Cdd:pfam05483 291 KDHLTKELEDIKMSLQRSMSTQKALEEDL-------QIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1209 LSEELAIQLDicckKTEALLEAKTNELinisssktnailsrishcQHRTTKVKEALLIKTCTVSELEAQLRQLTEEQNTL 1288
Cdd:pfam05483 364 LLRTEQQRLE----KNEDQLKIITMEL------------------QKKSSELEEMTKFKNNKEVELEELKKILAEDEKLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1289 --NISFQQATHQLEEKENQIKSMKADIESLVTEKEA-LQKEGGNQQQAASEKESCITQLKKELSENINAVTLMKEELKEK 1365
Cdd:pfam05483 422 deKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIqLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLEN 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1366 KVEISSLSKQLTDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISALEQVDDWSNKFSEW 1445
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYE 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1446 KKKAQSRFTQHQNTVKELQIQLELKSKEAYEKDEQINLLKEELDQQNKRFDC-------LKGEMEDDKSKMEKKESNLET 1518
Cdd:pfam05483 582 VLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAyeikvnkLELELASAKQKFEEIIDNYQK 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1519 ELKSQTARIMELEDHITQKTIEIESLNEVLKNYN---QQKDIEHKELVQKLQH-FQELGEEKDNRVKEAEEKiltlENQV 1594
Cdd:pfam05483 662 EIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDkrcQHKIAEMVALMEKHKHqYDKIIEERDSELGLYKNK----EQEQ 737
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 6715600 1595 YSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRK 1643
Cdd:pfam05483 738 SSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1919-2095 |
7.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1919 SNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKEH---------QQELEILKkEYDQEREEkIKQEQEDLELK 1989
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlseeaKLLLQQLS-ELESQLAE-ARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1990 HNSTLKQLMREFNTQLAQKEQELEMTIKETINKAQEVEAELLESHQEETNQ---LLKKIAEKDDDLKRTAKRYEEILDAR 2066
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDviaLRAQIAALRAQLQQEAQRILASLEAE 321
|
170 180 190
....*....|....*....|....*....|.
gi 6715600 2067 EEEMTAKVRDLQTQLEELQKKYQQ--KLEQE 2095
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAElpELEAE 352
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1616-1890 |
7.55e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.65 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1616 KSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYKKGTESHLSELNTKLQEREREVHILEEKL 1695
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1696 KSVESS---QSETLIVPRSAKNVAAYTEQEEADSQGCVQKTYeekisvlQRNLTEKEKLLQRVGQEKEEtvSSHFEMRCQ 1772
Cdd:pfam17380 370 IAMEISrmrELERLQMERQQKNERVRQELEAARKVKILEEER-------QRKIQQQKVEMEQIRAEQEE--ARQREVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1773 YQERLIKLEHAEAKQHEDQSMIGHLQEELEEKNKKYSLIVAQHVEKEGGKNniQAKQNLENVFDDVQKTLQEKELTCQIL 1852
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEE--QRRKILEKELEERKQAMIEEERKRKLL 518
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 6715600 1853 EQKIKELDSCLVRQKEVHRVEMEELTSK--YEKLQALQQM 1890
Cdd:pfam17380 519 EKEMEERQKAIYEEERRREAEEERRKQQemEERRRIQEQM 558
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
279-1722 |
7.87e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 279 KTLETLQQRVKRQENLLKRCKETIQSHKE--QCTLLTSEKEALQEQLDERLQELEKIKDLHmAEKTKLITQLRDAKNLIE 356
Cdd:TIGR01612 1129 HHIKALEEIKKKSENYIDEIKAQINDLEDvaDKAISNDDPEEIEKKIENIVTKIDKKKNIY-DEIKKLLNEIAEIEKDKT 1207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 357 QLEQDKGMVIAETKRQMHETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFE-------------------ELE 417
Cdd:TIGR01612 1208 SLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEmgiemdikaemetfnishdDDK 1287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 418 KALSTAQKTEEARRKLKaemDEQIKTIEKTSEEERI-----SLQQELSRVKQEVVDVMKKSSE----EQIAKLQKLheKE 488
Cdd:TIGR01612 1288 DHHIISKKHDENISDIR---EKSLKIIEDFSEESDIndikkELQKNLLDAQKHNSDINLYLNEianiYNILKLNKI--KK 1362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 489 LARKEQELTKKLQtrerEFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAIltesenklRDLQQEAETYRTR 568
Cdd:TIGR01612 1363 IIDEVKEYTKEIE----ENNKNIKDELDKSEKLIKKIKDDINLEECKSKIESTLDDKDI--------DECIKKIKELKNH 1430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 569 ILELESSLEKSLQENKNQSKDLAVHLEAEKNKHNKEITVMVEK-------HKTELESLKHQQD------------ALWTE 629
Cdd:TIGR01612 1431 ILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKkdnatndHDFNINELKEHIDkskgckdeadknAKAIE 1510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 630 KLQVLKQQYQTEMEKLREK-----CEQEKETLLKDKEIIFQAHIEEMNEKTLEKLDVKQTELESLSSELSEVLKARHKLE 704
Cdd:TIGR01612 1511 KNKELFEQYKKDVTELLNKysalaIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDK 1590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 705 EELSVLKDQTDkmKQELEAKMDEQKNhHQQQVDSIIKEHEvSIQRTEKALkdQINQLELLLKERDKHLKEHQAHVENLEA 784
Cdd:TIGR01612 1591 SNKAAIDIQLS--LENFENKFLKISD-IKKKINDCLKETE-SIEKKISSF--SIDSQDTELKENGDNLNSLQEFLESLKD 1664
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 785 DIKRSEGELQQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVaeVEAQKKDVCTELDAHKIQVQ 864
Cdd:TIGR01612 1665 QKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIKEL--IEPTIENLISSFNTNDLEGI 1742
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 865 DLMQQLEKQNSEMEQKVKSLTQVYE---SKLEDGNKEQ---EQTKQILVEKENMILQMREGQKK-----------EIEIL 927
Cdd:TIGR01612 1743 DPNEKLEEYNTEIGDIYEEFIELYNiiaGCLETVSKEPityDEIKNTRINAQNEFLKIIEIEKKsksylddieakEFDRI 1822
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 928 TQKLSAKEDSIHI-LNEEYET---KFKNQEKKMEKVKQKAKE---------MQETLKKKLLDQEAKLKKELENTALELSQ 994
Cdd:TIGR01612 1823 INHFKKKLDHVNDkFTKEYSKineGFDDISKSIENVKNSTDEnllfdilnkTKDAYAGIIGKKYYSYKDEAEKIFINISK 1902
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 995 KEKQFNAKMlemaqANSAGIS-------DAVSRLETNQKEQI----------ESLTEVhRRELNDVISIWEKKLNQQAEE 1057
Cdd:TIGR01612 1903 LANSINIQI-----QNNSGIDlfdniniAILSSLDSEKEDTLkfipspekepEIYTKI-RDSYDTLLDIFKKSQDLHKKE 1976
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1058 LQEIHEI----QLQEKEQEVAELKQKILLFGCEKEEMNKEITWLkeegVKQDTTLNELQEQLKQKSAHVNSLAQDETKLK 1133
Cdd:TIGR01612 1977 QDTLNIIfenqQLYEKIQASNELKDTLSDLKYKKEKILNDVKLL----LHKFDELNKLSCDSQNYDTILELSKQDKIKEK 2052
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1134 A-----HLEKLEVDLNKSLKENTFLQ-----EQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKS 1203
Cdd:TIGR01612 2053 IdnyekEKEKFGIDFDVKAMEEKFDNdikdiEKFENNYKHSEKDNHDFSEEKDNIIQSKKKLKELTEAFNTEIKIIEDKI 2132
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1204 LEFKKLSEELAIQLDICCKKTEA-LLEAKTNELINISSSKTNAilsrishcqhrttkvkeallikTCTVSELEAQLRQLT 1282
Cdd:TIGR01612 2133 IEKNDLIDKLIEMRKECLLFSYAtLVETLKSKVINHSEFITSA----------------------AKFSKDFFEFIEDIS 2190
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1283 EEQNTlNISFQQATHQLEEKENQIKSMKADIESlvTEKEALQKEggnqqQAASEKESCITQLKKELSENINAVTLMKEEL 1362
Cdd:TIGR01612 2191 DSLND-DIDALQIKYNLNQTKKHMISILADATK--DHNNLIEKE-----KEATKIINNLTELFTIDFNNADADILHNNKI 2262
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1363 kekkveisslskQLTDLNVQLQNSislsekeaaISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEkisaleqvddwsnkF 1442
Cdd:TIGR01612 2263 ------------QIIYFNSELHKS---------IESIKKLYKKINAFKLLNISHINEKYFDISKE--------------F 2307
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1443 SEWKKKAQSRFTQHQNTVKELqiqlelkskEAYEKDEQINLLKEELDQQNKRFDCLKgEMEDDKSKMEKKESNLETELKS 1522
Cdd:TIGR01612 2308 DNIIQLQKHKLTENLNDLKEI---------DQYISDKKNIFLHALNENTNFNFNALK-EIYDDIINRENKADEIENINNK 2377
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1523 QTARIMELEDHITQKTIEIESL----------NEVLKNYNQQKDIEH-----KELVQKLQHFQELgeekDNRVKEAEEKI 1587
Cdd:TIGR01612 2378 ENENIMQYIDTITKLTEKIQDIlifvttyendNNIIKQHIQDNDENDvskikDNLKKTIQSFQEI----LNKIDEIKAQF 2453
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1588 LTlENQVYSMKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAAIKKQLLSQMEEKEEQYK 1667
Cdd:TIGR01612 2454 YG-GNNINNIIITISQNANDVKNHFSKDLTIENELIQIQKRLEDIKNAAHEIRSEQITKYTNAIHNHIEEQFKKIENNSN 2532
|
1530 1540 1550 1560 1570
....*....|....*....|....*....|....*....|....*....|....*
gi 6715600 1668 KGTESHLSELNTKLQEREREVHILEEKLKSVESSQSETLIVPRSAKNVAAYTEQE 1722
Cdd:TIGR01612 2533 KDEVYKINEIDNIIEKIINYNKEPEVKLHAIIDNKNEFASIIPDIKNLIALIESE 2587
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
842-960 |
7.96e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 842 VAEVEAQKKdvctELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKE-QEQTKQILVEKENMILQMREGQ 920
Cdd:PRK00409 522 IASLEELER----ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEAKKEADEIIKELRQLQ 597
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 6715600 921 KKEI-EILTQKLSAKEDSIHILNEEYETKFKNQEKKMEKVK 960
Cdd:PRK00409 598 KGGYaSVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1271-1452 |
8.00e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1271 VSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGNQQQAASEKESCITQLK----- 1345
Cdd:COG3883 32 LEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDvllgs 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1346 KELSENINAVTLMKEELKEKKVEISSLSKQLTDLNVQLQnsiSLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLS 1425
Cdd:COG3883 112 ESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKA---ELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLS 188
|
170 180
....*....|....*....|....*..
gi 6715600 1426 KEKISALEQVDDWSNKFSEWKKKAQSR 1452
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAEAAAAAA 215
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1571-1699 |
8.17e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 8.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1571 ELGEEKDnrvkEAEEKILTLENQvysmKAELETKKKELEHVNLSVKSKEEELKALEDRLESESAAKLAELKRKAEQKIAA 1650
Cdd:PRK00409 510 LIGEDKE----KLNELIASLEEL----ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 6715600 1651 IKK---QLLSQMEEKEEQYKKGTESH-----LSELNTKLQEREREVHILEEKLKSVE 1699
Cdd:PRK00409 582 AKKeadEIIKELRQLQKGGYASVKAHelieaRKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1939-2070 |
8.52e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 1939 KQKLGKEIVRLQKDLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNtQLAQKEQELEMtike 2018
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEK-RLLQKEENLDR---- 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 6715600 2019 tinkaqevEAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEM 2070
Cdd:PRK12704 101 --------KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
280-596 |
9.02e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 9.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 280 TLETLQQRVKRQENLLK--RCKETIQSHKEQ---CTLltSEKEALQEQLDERLQELEkikdLHMAEKTKLITQLRDAKNL 354
Cdd:PRK02224 434 TLRTARERVEEAEALLEagKCPECGQPVEGSphvETI--EEDRERVEELEAELEDLE----EEVEEVEERLERAEDLVEA 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 355 IEQLEQDKgmviaetkrqmhETLEMKEEEIAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLK 434
Cdd:PRK02224 508 EDRIERLE------------ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 435 ------AEMDEQIKTIEK--TSEEERISLQQELSRVKQevvdvmkksseeqiaKLQKLHEKELARKEQELTKKLQTRERE 506
Cdd:PRK02224 576 elnsklAELKERIESLERirTLLAAIADAEDEIERLRE---------------KREALAELNDERRERLAEKRERKRELE 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6715600 507 fqeqmkvalEKSQSEYLKISQEKEQQEslaleelelqkKAILTESENKLRDLQQEAETYRTRILELESSLEkSLQENKNQ 586
Cdd:PRK02224 641 ---------AEFDEARIEEAREDKERA-----------EEYLEQVEEKLDELREERDDLQAEIGAVENELE-ELEELRER 699
|
330
....*....|
gi 6715600 587 SKDLAVHLEA 596
Cdd:PRK02224 700 REALENRVEA 709
|
|
|