|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
221-285 |
2.87e-35 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 127.90 E-value: 2.87e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1714206204 221 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 285
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
81-145 |
6.38e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 115.58 E-value: 6.38e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1714206204 81 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 145
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
221-285 |
2.34e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 2.34e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1714206204 221 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 285
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
81-146 |
1.79e-26 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 103.05 E-value: 1.79e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1714206204 81 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFECPALQGIFTRPSKLT 146
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
356-943 |
1.02e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.92 E-value: 1.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 356 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRkekvDLSNQL 435
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR----ELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 436 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLR 515
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 516 RGEIEELQQcllhsgppppdhpDAAEILRLRERLLSASKEHQREsgvlRDKYEKALKAYQAEVDKLRAANEKYAQEVAGL 595
Cdd:COG1196 399 AAQLEELEE-------------AEEALLERLERLEEELEELEEA----LAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 596 KDKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELG-NLQAKHDLE 674
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGvEAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 675 TAMHVKEKEALREKLQEAQEELAGLQRHW--RAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFL 752
Cdd:COG1196 542 AALAAALQNIVVEDDEVAAAAIEYLKAAKagRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 753 KEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAEnrlqavealcssqhthmiesndiSEETIRTKETVEGLQDKL 832
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG-----------------------SLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 833 NKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELEtvsrkthdasgQLVLISQELLRKERSLNEL 912
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE-----------QLEAEREELLEELLEEEEL 747
|
570 580 590
....*....|....*....|....*....|.
gi 1714206204 913 RVLLLEANRHSPGPERDLSREVHKAEWRIKE 943
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-963 |
5.53e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 5.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 357 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVESVRKEKVDLSNQLE 436
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 437 EERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLllEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRR 516
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 517 GEIEELQQCLLHSGPPPPDHPDAAEIL-RLRERLLSAS-------KEHQRESGVL---------RDKYEKALKAY----- 574
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDSLeRLQENLEGFSegvkallKNQSGLSGILgvlselisvDEGYEAAIEAAlggrl 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 575 QAEVDKlraANEKYAQEVAGLKDK--------------------VQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKAT 634
Cdd:TIGR02168 548 QAVVVE---NLNAAKKAIAFLKQNelgrvtflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 635 L-------------------------------------------NSGPGAQQKEIGELKAVMEgiKMEHQLELGNlqakh 671
Cdd:TIGR02168 625 VlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaktNSSILERRREIEELEEKIE--ELEEKIAELE----- 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 672 dletamhvKEKEALREKLQEAQEELAGLQRHWRaQLEVQASQHRLELQEAQDQRRDAELRV----HELEKLDVEYRGQAQ 747
Cdd:TIGR02168 698 --------KALAELRKELEELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLEERIaqlsKELTELEAEIEELEE 768
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 748 AIEFLKEQISLAEKKMldyERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcsSQHTHMIESNDISEETIRTKETVEG 827
Cdd:TIGR02168 769 RLEEAEEELAEAEAEI---EELEAQIEQLKEELKALREALDELRAELTLLNE---EAANLRERLESLERRIAATERRLED 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 828 LQDKLNKRDKEVTALTSQTEMLRAQVSALESKcksgekkVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKER 907
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESE-------LEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1714206204 908 SLNELRVLLLEANRHSPGPERDLS------REVHKAEWRI---KEQKLKDDIRGLREKLTGLDKE 963
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDnlqerlSEEYSLTLEEaeaLENKIEDDEEEARRRLKRLENK 980
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
361-910 |
1.54e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 85.17 E-value: 1.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 361 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKEIALLKA--QHEQYVAEAEEKLQRARLLVESVRKEKVDLS 432
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 433 NQLEEERRKV-----EDLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTtvaeksrV 505
Cdd:pfam15921 342 DKIEELEKQLvlansELTEARTERDQFSQesGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT-------I 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 506 LQLEEELTLRRGEIEELqqcllhsgppppdhpdaaeilrlrERLLSASKEHqresgvLRDKYEKALKAYQAEVDKLRAAN 585
Cdd:pfam15921 415 DHLRRELDDRNMEVQRL------------------------EALLKAMKSE------CQGQMERQMAAIQGKNESLEKVS 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 586 EKYAQEVAG---LKDKVQQATSENMGLMDNWKSKLDSLAS--DHQKSLEDLKA---TLNSGPGAQQKEIGELKAvmEGik 657
Cdd:pfam15921 465 SLTAQLESTkemLRKVVEELTAKKMTLESSERTVSDLTASlqEKERAIEATNAeitKLRSRVDLKLQELQHLKN--EG-- 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 658 mEHqleLGNLQAKHD-LETAMHVKEK--EALREKLQEAQE------ELAGLQRHWRAQLEVQASQHRLELQEAQ--DQRR 726
Cdd:pfam15921 541 -DH---LRNVQTECEaLKLQMAEKDKviEILRQQIENMTQlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKilKDKK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 727 DAELRVHELEKLDVEYRgQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAE----NRLQAVEALCS 802
Cdd:pfam15921 617 DAKIRELEARVSDLELE-KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKrnfrNKSEEMETTTN 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 803 SQHTHMIESNDISEETIRTKETVEGLQDKLNK----RDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLE 878
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLS 775
|
570 580 590
....*....|....*....|....*....|...
gi 1714206204 879 AELETVSRKTHDASGQL-VLISQELLRKERSLN 910
Cdd:pfam15921 776 QELSTVATEKNKMAGELeVLRSQERRLKEKVAN 808
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
349-1009 |
9.82e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.42 E-value: 9.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 349 RKISGTTALQEALKEKQQHIEQLLAE-----RDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQRARLL 420
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRVKEKIGELEAEIASLERSiaeKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 421 VESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL-----LEKAQAER--LLRELAD 493
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrekLEKLKREIneLKRELDR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 494 NRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGppPPDHPDAAEILRLRERLLSASKEHQRESGVLrDKYEKALKA 573
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELYDLKEEY-DRVEKELSK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 574 YQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGL-------------------------MDNWKSKLDSLASDHQKSL 628
Cdd:TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataievaagnrLNNVVVEDDAVAKEAIELL 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 629 EDLKAT------LN-----SGPGAQQKEIGELKAVMEGIKMEHQLE------LGNLQAKHDLETAM-------------- 677
Cdd:TIGR02169 568 KRRKAGratflpLNkmrdeRRDLSILSEDGVIGFAVDLVEFDPKYEpafkyvFGDTLVVEDIEAARrlmgkyrmvtlege 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 678 -----------HVKEKEA------LREKLQEAQEELAGLQRHwRAQLEVQASQHRLELQEAQDQRRDAELRVHELEK--- 737
Cdd:TIGR02169 648 lfeksgamtggSRAPRGGilfsrsEPAELQRLRERLEGLKRE-LSSLQSELRRIENRLDELSQELSDASRKIGEIEKeie 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 738 -LDVEYRGQAQAIEFLKEQISLAEKKMLDYER-LQRAEAqgkqEVESLREKLLVAENRLQAVEALCSSQHTHMI--ESND 813
Cdd:TIGR02169 727 qLEQEEEKLKERLEELEEDLSSLEQEIENVKSeLKELEA----RIEELEEDLHKLEEALNDLEARLSHSRIPEIqaELSK 802
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 814 ISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASG 893
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 894 QLVLISQELLRKERSLNELRVllleanrhspgPERDLSREVHKAEWRIKEQKLKDDIrgLREKLTGLDKE-KSLSDQRRY 972
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELER-----------KIEELEAQIEKKRKRLSELKAKLEA--LEEELSEIEDPkGEDEEIPEE 949
|
730 740 750
....*....|....*....|....*....|....*..
gi 1714206204 973 SLIDRSSAPELLRLQHQLMSTEDALRDALDQAQQVEK 1009
Cdd:TIGR02169 950 ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1010 |
2.74e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 2.74e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 356 ALQEALKEKQQHIEQLLAER-------DLERAEVAKATSHICEVEKEIALLKAQHEQ----------YVAEAEEKLQRAR 418
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVseleeeiEELQKELYALANEISRLEQQKQILRERLANlerqleeleaQLEELESKLDELA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 419 LLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL---LRELADNR 495
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLearLERLEDRR 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 496 LTTVAEKSRVLQ---------LEEELTLRRGEIEELQQCLlhSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLR-- 564
Cdd:TIGR02168 417 ERLQQEIEELLKkleeaelkeLQAELEELEEELEELQEEL--ERLEEALEELREELEEAEQALDAAERELAQLQARLDsl 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 565 DKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQ----------QATSENMG--LMDNWKSKLDSLASDHQKS----- 627
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeaaieAALGGRLQavVVENLNAAKKAIAFLKQNElgrvt 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 628 ---LEDLKATLNSGPGAQ--QKEIGELKAVMEGIKMEHQLE------LGNLQAKHDLETAMHVKEKEALREKLQEAQEEL 696
Cdd:TIGR02168 575 flpLDSIKGTEIQGNDREilKNIEGFLGVAKDLVKFDPKLRkalsylLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDL 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 697 AGlqRHW-----RAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQR 771
Cdd:TIGR02168 655 VR--PGGvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 772 AE-AQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNdisEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLR 850
Cdd:TIGR02168 733 KDlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE---EELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 851 AQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLL---------LEANR 921
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeallnerasLEEAL 889
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 922 HSPGPERD-LSREVHKAEWRIKEqkLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDA 1000
Cdd:TIGR02168 890 ALLRSELEeLSEELRELESKRSE--LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDE 967
|
730
....*....|
gi 1714206204 1001 LDQAQQVEKL 1010
Cdd:TIGR02168 968 EEARRRLKRL 977
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
219-279 |
8.03e-15 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 78.96 E-value: 8.03e-15
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 219 LRLGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLF 279
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF 63
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
81-142 |
1.06e-13 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 75.49 E-value: 1.06e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1714206204 81 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 142
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
355-870 |
5.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.43 E-value: 5.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 355 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY---VAEAEEKLQRARLLVESVRKEKVDL 431
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 432 SNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE 511
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 512 LTLRRGEIEELQQcllhsgppppdhpDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQE 591
Cdd:COG1196 444 LEEAAEEEAELEE-------------EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 592 VAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQkeIGELKAVMEGIKMEhqLELGNLQAKH 671
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGRATF--LPLDKIRARA 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 672 DLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEF 751
Cdd:COG1196 587 ALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 752 LKEQISLAekkmldyERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEGLQDK 831
Cdd:COG1196 667 RRELLAAL-------LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1714206204 832 LNKRDKEVTALTSQTEMLR-AQVSALESKCKSGEKKVDAL 870
Cdd:COG1196 740 ELLEEEELLEEEALEELPEpPDLEELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
348-914 |
1.18e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.87 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 348 ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRARLLVESVR 425
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 426 KEKVDLSNQLEEERRKVEDLQFRVEE------------ESITKGDlETQTQLEHARIGELEQSllLEKAQAERLLRELAD 493
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEakkkadaakkkaEEAKKAA-EAAKAEAEAAADEAEAA--EEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 494 NRLTTVAEKSRVLQLEEELTLRRGEI----EELQQCLLHSGPPPPDHPDAAEILRLRErlLSASKEHQRESGVLRDKYEK 569
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDkkkaDELKKAAAAKKKADEAKKKAEEKKKADE--AKKKAEEAKKADEAKKKAEE 1455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 570 ALKAYQAEvdklRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSL--ASDHQKSLEDLKAtlnsgpGAQQKEIG 647
Cdd:PTZ00121 1456 AKKAEEAK----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKK------AEEAKKAD 1525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 648 ELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLE----LQEAQD 723
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEevmkLYEEEK 1605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 724 QRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAE-KKMLDYERLQRAEAQGKQEVESLREKllVAENRLQAVEALCS 802
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKK--AEEDKKKAEEAKKA 1683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 803 SQHTHMIESNDISEEtiRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLK---EKRRLEA 879
Cdd:PTZ00121 1684 EEDEKKAAEALKKEA--EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKdeeEKKKIAH 1761
|
570 580 590
....*....|....*....|....*....|....*
gi 1714206204 880 ELETVSRKTHDASGQLVLISQELLRKERSLNELRV 914
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
338-1045 |
3.05e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.86 E-value: 3.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 338 GLLTETSSRYARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKATshicEVEKEIALLKAQHEQYVAEAEEKLQ 415
Cdd:PTZ00121 1098 GKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAEDARKAEEARKA----EDAKRVEIARKAEDARKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 416 RARLLVESVRKEKVdlsnQLEEERRKVEDLQfRVEEESitkgDLETQTQLEHARIGELEQsllleKAQAERLLRELADNR 495
Cdd:PTZ00121 1174 DAKKAEAARKAEEV----RKAEELRKAEDAR-KAEAAR----KAEEERKAEEARKAEDAK-----KAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 496 lttvAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASK----EHQRESGVLRDKYEKAL 571
Cdd:PTZ00121 1240 ----EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEakkaEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 572 KAyqaevDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATlnsgpGAQQKEIGELKA 651
Cdd:PTZ00121 1316 KA-----DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK-----EEAKKKADAAKK 1385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 652 VMEGIKMEHQLELgnlQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAElr 731
Cdd:PTZ00121 1386 KAEEKKKADEAKK---KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE-- 1460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 732 vhELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRA-EAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIE 810
Cdd:PTZ00121 1461 --EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAdEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 811 SNDISE----ETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEkkVDALLKEKRRLEAEletVSR 886
Cdd:PTZ00121 1539 AKKAEEkkkaDELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE--VMKLYEEEKKMKAE---EAK 1613
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 887 KTHDASgqlvlISQELLRKERslnelrvlllEANRHSPGPERDLSREVHKAEwRIKEQKLKDDIRGLREKltgldkEKSL 966
Cdd:PTZ00121 1614 KAEEAK-----IKAEELKKAE----------EEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEA------KKAE 1671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 967 SDQRRyslidrssAPELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRSCPDKAQTIGNSGSANGIH-QQDKAQKQEDK 1045
Cdd:PTZ00121 1672 EDKKK--------AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKaEEAKKEAEEDK 1743
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
383-756 |
9.47e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 9.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 383 AKATSHICEVEKEIAllkaQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQ 462
Cdd:TIGR02168 666 AKTNSSILERRREIE----ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 463 TQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRRGEIEElqqcllhsgppppdhpdaaei 542
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA--------------------- 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 543 lrLRERLLSASKEHQRESGVLRDKYEKaLKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEnmglmdnwkskldslas 622
Cdd:TIGR02168 801 --LREALDELRAELTLLNEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDIESLAAE----------------- 860
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 623 dhQKSLEDLKATLNSgpgaQQKEIGELKAVMEGIKMEHQLELGNLQAK-HDLETAMHVKEKE--ALREKLQEAQEELAGL 699
Cdd:TIGR02168 861 --IEELEELIEELES----ELEALLNERASLEEALALLRSELEELSEElRELESKRSELRREleELREKLAQLELRLEGL 934
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1714206204 700 QRHWRAQLEVQASQHRLELQEAQ-------DQRRDAELRVHELEK---------LDV--EYRGQAQAIEFLKEQI 756
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEalenkieDDEEEARRRLKRLENkikelgpvnLAAieEYEELKERYDFLTAQK 1009
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
340-787 |
1.13e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 340 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARL 419
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 420 LVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 499
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 500 AEKSRVLQLEEELTLRRGEIE-------ELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRES---GVLRDKYEK 569
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEgvkaallLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDdevAAAAIEYLK 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 570 ALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDnWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGEL 649
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR-EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 650 KAVMEGikMEHQLELGnlqakhdletAMHVKEKEALREKLQEAQEELAGLQRHwRAQLEVQASQHRLELQEAQDQRRDAE 729
Cdd:COG1196 647 REVTLE--GEGGSAGG----------SLTGGSRRELLAALLEAEAELEELAER-LAEEELELEEALLAEEEEERELAEAE 713
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1714206204 730 LRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAE-----AQGKQEVESLREKL 787
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdlEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
393-1014 |
1.87e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 393 EKEIALLKAQHEqyvaEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGE 472
Cdd:TIGR02168 224 ELELALLVLRLE----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 473 LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhsgppppdhPDAAEILRLRERLLSA 552
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL----------ESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 553 SKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMdnwKSKLDSLASDHQKSLEDLK 632
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL---KKLEEAELKELQAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 633 ATLNSGPGAQQKEIGELKAVMEGIKmehQLELGNLQAKHDLETA-MHVKEKEALREKLQEAQEELAGL--QRHWRAQLEV 709
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELE---EAEQALDAAERELAQLqARLDSLERLQENLEGFSEGVKALlkNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 710 QASQhRLELQEAQDQRRDAELRVHeLEKLDVEYRGQA-QAIEFLKE------------QISLAEKKMLDYERLQR----- 771
Cdd:TIGR02168 524 VLSE-LISVDEGYEAAIEAALGGR-LQAVVVENLNAAkKAIAFLKQnelgrvtflpldSIKGTEIQGNDREILKNiegfl 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 772 --------AEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESND---ISEETIRTKETVEGLQDKLNkRDKEVT 840
Cdd:TIGR02168 602 gvakdlvkFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlVRPGGVITGGSAKTNSSILE-RRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 841 ALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEAN 920
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 921 rhspGPERDLSREVHKAEWRIKE-----QKLKDDIRGLREKLTGLDKEKSlSDQRRYSLIDRSSAPELLRLQHQLMSTED 995
Cdd:TIGR02168 761 ----AEIEELEERLEEAEEELAEaeaeiEELEAQIEQLKEELKALREALD-ELRAELTLLNEEAANLRERLESLERRIAA 835
|
650
....*....|....*....
gi 1714206204 996 ALRDALDQAQQVEKLMEAM 1014
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDI 854
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
373-846 |
4.92e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.01 E-value: 4.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 373 AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEE 452
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 453 SiTKGDLETQTQLEHARIGELEQSlLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRRGEieelqqcllhSGPP 532
Cdd:PTZ00121 1404 K-KKADELKKAAAAKKKADEAKKK-AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE----------EAKK 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 533 PPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQA-------EVDKLRAANEKYAQEVAGLKDKVQQAtSE 605
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAkkaeeakKADEAKKAEEAKKADEAKKAEEKKKA-DE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 606 NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNL-QAKHDLETAMHVKEKEA 684
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkKAEEAKIKAEELKKAEE 1630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 685 LREKLQE----AQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLK-EQI-SL 758
Cdd:PTZ00121 1631 EKKKVEQlkkkEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaEELkKK 1710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 759 AEKKMLDYERLQRAEAQGKQEVESLREKllVAENRLQAVEALCSSQHTHMI-----ESNDISEETIRTKETV--EGLQDK 831
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEEKKKIahlkkEEEKKAEEIRKEKEAVieEELDEE 1788
|
490
....*....|....*
gi 1714206204 832 LNKRDKEVTALTSQT 846
Cdd:PTZ00121 1789 DEKRRMEVDKKIKDI 1803
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
684-1013 |
1.12e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 684 ALREKLQEAQEELAGLQRHWraqLEVQASQHRLELQEAQDQRRDAELRVHELEKldveyrgqaqAIEFLKEQISLAEKKm 763
Cdd:COG1196 217 ELKEELKELEAELLLLKLRE---LEAELEELEAELEELEAELEELEAELAELEA----------ELEELRLELEELELE- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 764 ldYERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcssqhthmiESNDISEETIRTKETVEGLQDKLNKRDKEVTALT 843
Cdd:COG1196 283 --LEEAQAEEYELLAELARLEQDIARLEERRRELEE----------RLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 844 SQTEMLRAQVSALEskcksgekkvDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHS 923
Cdd:COG1196 351 EELEEAEAELAEAE----------EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 924 pgpERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLidRSSAPELLRLQHQLMSTEDALRDALDQ 1003
Cdd:COG1196 421 ---EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL--LEEAALLEAALAELLEELAEAAARLLL 495
|
330
....*....|
gi 1714206204 1004 AQQVEKLMEA 1013
Cdd:COG1196 496 LLEAEADYEG 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
407-1012 |
3.11e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 3.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 407 VAEAEEKLQRARLLVESVRK----------EKVDLSNQLEEERRKVE---DLQFRVEEESIT-----KGDLETQTQLEHA 468
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEEnierldliidEKRQQLERLRREREKAEryqALLKEKREYEGYellkeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 469 RIGELEQSL----------LLEKAQAERLLRELAD--NRLTT---VAEKSRVLQLEEELTLRRGEIEELQQCLLHSgpPP 533
Cdd:TIGR02169 245 QLASLEEELeklteeiselEKRLEEIEQLLEELNKkiKDLGEeeqLRVKEKIGELEAEIASLERSIAEKERELEDA--EE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 534 PDHPDAAEILRLRERlLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGL---M 610
Cdd:TIGR02169 323 RLAKLEAEIDKLLAE-IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLkreI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 611 DNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKeIGELKAVMEGIKMEHQLELGNL-QAKHDLETAMhvKEKEALREKL 689
Cdd:TIGR02169 402 NELKRELDRLQEELQRLSEELADLNAAIAGIEAK-INELEEEKEDKALEIKKQEWKLeQLAADLSKYE--QELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 690 QEAQEELAGLQRHWrAQLEVQASQhrleLQEAQDQRRDAEL-----------RVHELEKLDVEYRGQ------------- 745
Cdd:TIGR02169 479 DRVEKELSKLQREL-AEAEAQARA----SEERVRGGRAVEEvlkasiqgvhgTVAQLGSVGERYATAievaagnrlnnvv 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 746 -------AQAIEFLKE-QIS----LAEKKMLDYERLQRAEAQG------------KQEVES-----LREKLLVaeNRLQA 796
Cdd:TIGR02169 554 veddavaKEAIELLKRrKAGratfLPLNKMRDERRDLSILSEDgvigfavdlvefDPKYEPafkyvFGDTLVV--EDIEA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 797 VEALCSSQHTHMIE----------------SNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKC 860
Cdd:TIGR02169 632 ARRLMGKYRMVTLEgelfeksgamtggsraPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 861 KSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLL--LEANRHS-----PGPERDLSRE 933
Cdd:TIGR02169 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIeeLEEDLHKleealNDLEARLSHS 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 934 vhkaEWRIKE---QKLKDDIRGLREKLTGLDKEKSLSDQRRYSLidRSSAPELLRLQHQLMSTEDALRDALDQAQ-QVEK 1009
Cdd:TIGR02169 792 ----RIPEIQaelSKLEEEVSRIEARLREIEQKLNRLTLEKEYL--EKEIQELQEQRIDLKEQIKSIEKEIENLNgKKEE 865
|
...
gi 1714206204 1010 LME 1012
Cdd:TIGR02169 866 LEE 868
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
356-967 |
3.30e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 61.39 E-value: 3.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 356 ALQEALKEKQQHIEQLLAER---DLERAEVAKA--------TSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVESV 424
Cdd:pfam12128 312 AADAAVAKDRSELEALEDQHgafLDADIETAAAdqeqlpswQSELENLEERLKALTGKHQ----DVTAKYNRRRSKIKEQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 425 RKEKVDLSNQLEEERRKVEDLQFRVEEesitkGDLEtqtQLEHARIGELEQSLLLEKAQAERLlreladnrlttvaeKSR 504
Cdd:pfam12128 388 NNRDIAGIKDKLAKIREARDRQLAVAE-----DDLQ---ALESELREQLEAGKLEFNEEEYRL--------------KSR 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 505 VLQLEEELTLRRGEIEELQQcllhsgppppDHPDAAEILRLRERLLSASKEH---QRESGVLRDKYEKALKAYQAEvdkl 581
Cdd:pfam12128 446 LGELKLRLNQATATPELLLQ----------LENFDERIERAREEQEAANAEVerlQSELRQARKRRDQASEALRQA---- 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 582 raanEKYAQEVAGLKDKVQQATSENMGLM--------DNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVM 653
Cdd:pfam12128 512 ----SRRLEERQSALDELELQLFPQAGTLlhflrkeaPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 654 EGIK------MEHQLELGNLQAKHDLETAMHV-----KEKEALREKLQEAQEEL----AGLQ--RHWRAQLEVQASQHRL 716
Cdd:pfam12128 588 KRIDvpewaaSEEELRERLDKAEEALQSAREKqaaaeEQLVQANGELEKASREEtfarTALKnaRLDLRRLFDEKQSEKD 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 717 ELQEAQDQRRD-AELRVHELEK-LDVEYRGQAQAIEFLKEQISLAEKKMLDYerLQRAEAQGKQEVESLREKLLVAENRL 794
Cdd:pfam12128 668 KKNKALAERKDsANERLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAY--WQVVEGALDAQLALLKAAIAARRSGA 745
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 795 QAVEALCSSQHTHMIESNDISEETI-RTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVS----ALESKCKSGEKKVDA 869
Cdd:pfam12128 746 KAELKALETWYKRDLASLGVDPDVIaKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLqrrpRLATQLSNIERAISE 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 870 LLKEKRRLEAELET----VSRKTHDASGQLVLISqELLRKERS----LNELRVllleanrHSPGPERDLSREVHKA---E 938
Cdd:pfam12128 826 LQQQLARLIADTKLrrakLEMERKASEKQQVRLS-ENLRGLRCemskLATLKE-------DANSEQAQGSIGERLAqleD 897
|
650 660
....*....|....*....|....*....
gi 1714206204 939 WRIKEQKLKDDIRGLREKLTGLDKEKSLS 967
Cdd:pfam12128 898 LKLKRDYLSESVKKYVEHFKNVIADHSGS 926
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
385-887 |
4.73e-09 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 60.51 E-value: 4.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 385 ATSHICEVEKEIAllkaqheqyvAEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESItkgDLETQTQ 464
Cdd:pfam05483 152 ATRHLCNLLKETC----------ARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARL---EMHFKLK 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 465 LEHARIGELEQSLLLE----KAQAERLLRELADNR-----LTTVAEKSR--VLQLEEELTLR--------------RGEI 519
Cdd:pfam05483 219 EDHEKIQHLEEEYKKEindkEKQVSLLLIQITEKEnkmkdLTFLLEESRdkANQLEEKTKLQdenlkeliekkdhlTKEL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 520 EELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQ-RESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDK 598
Cdd:pfam05483 299 EDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQmEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQ 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 599 VQQATSEnMGLMDNWKSKLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKAV---MEGIKMEHQLELGNLQAK----H 671
Cdd:pfam05483 379 LKIITME-LQKKSSELEEMTKFKNNKEVELEELKKIL----AEDEKLLDEKKQFekiAEELKGKEQELIFLLQARekeiH 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 672 DLETAMHVKeKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQdqrrdaelRVHELEKLDVEYRGQAQAIEF 751
Cdd:pfam05483 454 DLEIQLTAI-KTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKE--------LTQEASDMTLELKKHQEDIIN 524
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 752 LKEQislaEKKML-DYERLQRAEAQGKQEVESLREKLlvaenRLQAVEALCSSQHTHMiESNDISEETIRTKETVEGLQD 830
Cdd:pfam05483 525 CKKQ----EERMLkQIENLEEKEMNLRDELESVREEF-----IQKGDEVKCKLDKSEE-NARSIEYEVLKKEKQMKILEN 594
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1714206204 831 KLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRK 887
Cdd:pfam05483 595 KCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQK 651
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-696 |
4.97e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 4.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 331 GGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYV 407
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 408 AEAEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL 487
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 488 LRELADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEIL----RLRERLLSASKEHQRESGVL 563
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnerASLEEALALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 564 RDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQatsenmglmdnwksKLDSLASDHQKSLEDLKATLNSGPGAQQ 643
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN--------------LQERLSEEYSLTLEEAEALENKIEDDEE 968
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1714206204 644 KEIGELKAVMEGIKmehqlELG--NLQA-----------------KHDLETAmhvkekealREKLQEAQEEL 696
Cdd:TIGR02168 969 EARRRLKRLENKIK-----ELGpvNLAAieeyeelkerydfltaqKEDLTEA---------KETLEEAIEEI 1026
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
336-763 |
4.13e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 336 RSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 415
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 416 RARLLVEsvrkekvdlsnQLEEERRKVEDLQFRVEEESITKGDLEtqtqlehARIGELEQSLLLEKAQAERLLRELADNR 495
Cdd:TIGR02169 731 EEEKLKE-----------RLEELEEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEEALNDLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 496 LTTVAEKSRvlQLEEELTLRRGEIEELQQCLlhsgppppdhpdaaEILRLRERLLSASKEHQREsgvLRDKYEKALKAYQ 575
Cdd:TIGR02169 793 IPEIQAELS--KLEEEVSRIEARLREIEQKL--------------NRLTLEKEYLEKEIQELQE---QRIDLKEQIKSIE 853
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 576 AEVDKLRAANEKYAQEVAGLKDKVQQatsenmglmdnwkskLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKAVMEg 655
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRD---------------LESRLGDLKKERDELEAQL----RELERKIEELEAQIE- 913
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 656 iKMEHQLELgnlqakhdletamhvkekeaLREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHEl 735
Cdd:TIGR02169 914 -KKRKRLSE--------------------LKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE- 971
|
410 420
....*....|....*....|....*...
gi 1714206204 736 eklDVEYRGQAQAIEFLKEQISLAEKKM 763
Cdd:TIGR02169 972 ---PVNMLAIQEYEEVLKRLDELKEKRA 996
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
542-886 |
6.10e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 56.67 E-value: 6.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 542 ILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAAnEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLa 621
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQEL-QKRIRLLEKREAEAEEALREQAELNRLKKKYLEAL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 622 SDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQ---LELGNLQAKHDLETAmHVKEKEALREKLQEAQEELAg 698
Cdd:pfam05557 89 NKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQstnSELEELQERLDLLKA-KASEAEQLRQNLEKQQSSLA- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 699 lqrhwRAQLEVQASQHRLELQEAQDQ----RRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEA 774
Cdd:pfam05557 167 -----EAEQRIKELEFEIQSQEQDSEivknSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 775 QGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEEtirtketVEGLQDKLNKRDKEVTALTSQTEMLRAQVS 854
Cdd:pfam05557 242 KYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRR-------IEQLQQREIVLKEENSSLTSSARQLEKARR 314
|
330 340 350
....*....|....*....|....*....|....*....
gi 1714206204 855 ALESKCKSGEKKVDALLKE-------KRRLEAELETVSR 886
Cdd:pfam05557 315 ELEQELAQYLKKIEDLNKKlkrhkalVRRLQRRVLLLTK 353
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
345-915 |
1.58e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.46 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 345 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKaqheqyvaEAEEKLQRARLLVESV 424
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE--------ELKEEIEELEKELESL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 425 RKEKVDLSNQLEEERRKVEDLQFRVEEesitkgdLETQTqlehARIGELEqslllEKAQAERLLRELADNRLTTVAEksr 504
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEE-------LEEKV----KELKELK-----EKAEEYIKLSEFYEEYLDELRE--- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 505 vlqLEEELTLRRGEIEELQQCLlhsgppPPDHPDAAEILRLRERLlsasKEHQRESGVLRDKYEK--ALKAYQAEVDKLR 582
Cdd:PRK03918 312 ---IEKRLSRLEEEINGIEERI------KELEEKEERLEELKKKL----KELEKRLEELEERHELyeEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 583 AANEKYA-QEVAGLKDKVQQATSENMGLMDNWKSKLDSLasdhQKSLEDLKATLNSGPGAQqkeiGELKAVMEGIKMEHQ 661
Cdd:PRK03918 379 KRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGEL----KKEIKELKKAIEELKKAK----GKCPVCGRELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 662 lelGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVqasqhrLELQEAQDQRRDAE--LRVHELEKLD 739
Cdd:PRK03918 451 ---KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL------IKLKELAEQLKELEekLKKYNLEELE 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 740 VEYRG----QAQAIEFLKEQISLAE--KKMLDYERLQRAEAQGKQEVESLREKLL------------VAENRLQAVEALc 801
Cdd:PRK03918 522 KKAEEyeklKEKLIKLKGEIKSLKKelEKLEELKKKLAELEKKLDELEEELAELLkeleelgfesveELEERLKELEPF- 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 802 ssqHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKC-----KSGEKKVDALLKEKRR 876
Cdd:PRK03918 601 ---YNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseeeyEELREEYLELSRELAG 677
|
570 580 590
....*....|....*....|....*....|....*....
gi 1714206204 877 LEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVL 915
Cdd:PRK03918 678 LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
391-887 |
3.32e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 3.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 391 EVEKEIALLKAQHEQYvAEAEEKLQRARLLVESVRKEKvdlsNQLEEERRKVEDLQfrveeesitkgdletQTQLEHARI 470
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAEL----EELREELEKLEKLL---------------QLLPLYQEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 471 GELEQSLLLEKAQAERLLRELAdnrlttvaeksRVLQLEEELTLRRGEIEELQQcllhsgppppdhpdaaEILRLRERLL 550
Cdd:COG4717 135 EALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQE----------------ELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 551 SASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLED 630
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGS 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 631 LKATLNSGPGAQQKEIGELKAVMegikmehqleLGNLQAKHDLETAMHVKEKEALREKLQEAQeelaglQRHWRAQLEVQ 710
Cdd:COG4717 268 LLSLILTIAGVLFLVLGLLALLF----------LLLAREKASLGKEAEELQALPALEELEEEE------LEELLAALGLP 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 711 ASQHRLELQEAQDQRRDAELRVHELEKLdveyRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVA 790
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEEL----EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEEL 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 791 ENRLQAVEALCSSqhthmiESNDISEETIrtKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESkcksgEKKVDAL 870
Cdd:COG4717 408 EEQLEELLGELEE------LLEALDEEEL--EEELEELEEELEELEEELEELREELAELEAELEQLEE-----DGELAEL 474
|
490
....*....|....*..
gi 1714206204 871 LKEKRRLEAELETVSRK 887
Cdd:COG4717 475 LQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
684-921 |
1.21e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 684 ALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQRRDAElrvHELEKLDVEYRGQAQAIEFLKEQISLAEKKM 763
Cdd:COG4942 17 AQADAAAEAEAELEQLQQ--------EIAELEKELAALKKEEKALL---KQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 764 ldyERLQRAEAQGKQEVESLREKLlvaENRLQAVEALCSSQHTHMIESNDISEETIRTketVEGLQDKLNKRDKEVTALT 843
Cdd:COG4942 86 ---AELEKEIAELRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQAEELR 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1714206204 844 SQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANR 921
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
678-879 |
1.46e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 678 HVKEKEALREKLQEAQEE---LAGLQRHWR--AQLEVQASQHRLELQEA---QDQRRDAELRvHELEKLDVEYRGQAQAI 749
Cdd:COG4913 233 HFDDLERAHEALEDAREQielLEPIRELAEryAAARERLAELEYLRAALrlwFAQRRLELLE-AELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 750 EFLKEQISLAEKKMLDYERlQRAEAQGkQEVESLREKLLVAENRLQAVEALCSSQHTHMiesNDISEETIRTKETVEGLQ 829
Cdd:COG4913 312 ERLEARLDALREELDELEA-QIRGNGG-DRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALR 386
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1714206204 830 DKLNKRdkeVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEA 879
Cdd:COG4913 387 AEAAAL---LEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
349-800 |
1.52e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 349 RKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKAtshicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEK 428
Cdd:COG4717 78 EELKEAEEKEEEYAELQEELEEL--EEELEELEAELE-----ELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 429 vdLSNQLEEERRKVEDLQFRVEEesitkgdletQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQL 508
Cdd:COG4717 151 --LEERLEELRELEEELEELEAE----------LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 509 EEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRdkYEKALKAYQAEVDKLRAANEKY 588
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILT--IAGVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 589 AQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATLnsgpgaqqKEIGELKAVMEGI-KMEHQLELGNL 667
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELL--------DRIEELQELLREAeELEEELQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 668 QAKHD-LETAMHVKEKEALREKLQEAQEELAGLQRhwRAQLEVQASQHRLELQEAQDQRRDAELRvHELEKLDVEYRGQA 746
Cdd:COG4717 369 EQEIAaLLAEAGVEDEEELRAALEQAEEYQELKEE--LEELEEQLEELLGELEELLEALDEEELE-EELEELEEELEELE 445
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 1714206204 747 QAIEFLKEQISLAEKKMLDYERLQRAEAQgKQEVESLREKLLVAENRLQAVEAL 800
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAEL-LQELEELKAELRELAEEWAALKLA 498
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
377-1015 |
1.72e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 377 LERAEVAKATSHICEVEKEIAllKAQHEqyVAEAEEKLQRARLLVESVRKEKvdlsNQLEEERRKVE---DLQFRVEEES 453
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKE--KALEE--LEEVEENIERLDLIIDEKRQQL----ERLRREREKAEryqALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 454 IT-----KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELTLRRgEIEELQqcl 526
Cdd:TIGR02169 225 GYellkeKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELE--- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 527 lhsgppppdhpdaAEILRLrERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEN 606
Cdd:TIGR02169 301 -------------AEIASL-ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 607 MGLM----------DNWKSKLDSLasdhQKSLEDLKATLNSGPGAQQKEIGEL-KAVMEGIKMEHQLElGNLQAKHDLET 675
Cdd:TIGR02169 367 EDLRaeleevdkefAETRDELKDY----REKLEKLKREINELKRELDRLQEELqRLSEELADLNAAIA-GIEAKINELEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 676 AMHVKEKE--ALREKLQEAQEELAGLQRHWRA------QLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQ 747
Cdd:TIGR02169 442 EKEDKALEikKQEWKLEQLAADLSKYEQELYDlkeeydRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 748 AIEFLKEQ-ISLAEKKMLDYE-----RLQ----RAEAQGKQEVESLREKLL-----VAENRLQAVEALCSSqhTHMIESN 812
Cdd:TIGR02169 522 GVHGTVAQlGSVGERYATAIEvaagnRLNnvvvEDDAVAKEAIELLKRRKAgratfLPLNKMRDERRDLSI--LSEDGVI 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 813 DISEETIRTKETVEG-----LQDKLNKRDKEvtalTSQTEMLRAQVSALESKC--KSG-----EKKVDALLKEKRRLEAE 880
Cdd:TIGR02169 600 GFAVDLVEFDPKYEPafkyvFGDTLVVEDIE----AARRLMGKYRMVTLEGELfeKSGamtggSRAPRGGILFSRSEPAE 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 881 LETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHSpgpeRDLSREVHKAEWRikEQKLKDDIRGLREKLTGL 960
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQE--EEKLKERLEELEEDLSSL 749
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1714206204 961 DKEKSLSDQRRYSLIDRSSAPE--LLRLQHQLMSTEDALRDalDQAQQVEKLMEAMR 1015
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEedLHKLEEALNDLEARLSH--SRIPEIQAELSKLE 804
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
686-1016 |
1.84e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 686 REKLQEAQEELAGLQRHwRAQLEVQASQHRlELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLD 765
Cdd:COG4913 609 RAKLAALEAELAELEEE-LAEAEERLEALE-AELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 766 YERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcssqhthmiESNDISEETIRTKETVEGLQDKLNKRDKEVTALTSQ 845
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEK----------ELEQAEEELDELQDRLEAAEDLARLELRALLEERFA 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 846 TEMLRAQVSALEskcKSGEKKVDALLKEKRRLEAELETV----SRKTHDASGQL---------------VLISQELLRKE 906
Cdd:COG4913 757 AALGDAVERELR---ENLEERIDALRARLNRAEEELERAmrafNREWPAETADLdadleslpeylalldRLEEDGLPEYE 833
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 907 RSLNELRvllleaNRHSPGPERDLSREVHKAEWRIKEQklkddIRGLREKLTGLDkeksLSDQRRYSL-IDRSSAPELLR 985
Cdd:COG4913 834 ERFKELL------NENSIEFVADLLSKLRRAIREIKER-----IDPLNDSLKRIP----FGPGRYLRLeARPRPDPEVRE 898
|
330 340 350
....*....|....*....|....*....|....*.
gi 1714206204 986 LQHQLMS-TEDALRDALDQAQ----QVEKLMEAMRS 1016
Cdd:COG4913 899 FRQELRAvTSGASLFDEELSEarfaALKRLIERLRS 934
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
342-800 |
2.14e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 342 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQH----------EQYVAEAE 411
Cdd:PRK02224 241 EVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAglddadaeavEARREELE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 412 EKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLREL 491
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 492 ADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhsgppppdhPDAAEILRLRERLLSASKEHQRESGVLRDKYEKAL 571
Cdd:PRK02224 401 GDAPVDLGNAEDFLEELREERDELREREAELEATL----------RTARERVEEAEALLEAGKCPECGQPVEGSPHVETI 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 572 KAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSenmglMDNWKSKLDSLAsDHQKSLEDLKATLNSGPGAQQKEIGELKA 651
Cdd:PRK02224 471 EEDRERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLE-ERREDLEELIAERRETIEEKRERAEELRE 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 652 VMEGIKMEHQLELGNLQAKHDlETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLE--------LQEAQD 723
Cdd:PRK02224 545 RAAELEAEAEEKREAAAEAEE-EAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIErlrekreaLAELND 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 724 QRRD--AEL--RVHELE-KLDVEYRGQAQA-IEFLKEQISLAEKKmLDYERLQRAEAQGK--------QEVESLREKLLV 789
Cdd:PRK02224 624 ERRErlAEKreRKRELEaEFDEARIEEAREdKERAEEYLEQVEEK-LDELREERDDLQAEigavenelEELEELRERREA 702
|
490
....*....|.
gi 1714206204 790 AENRLQAVEAL 800
Cdd:PRK02224 703 LENRVEALEAL 713
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
404-601 |
2.52e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 404 EQYVAE-AEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDlqFRVEEESItkgDLETQTQLEHARIGELEQSLL---L 479
Cdd:COG3206 159 EAYLEQnLELRREEARKALEFLEEQLPELRKELEEAEAALEE--FRQKNGLV---DLSEEAKLLLQQLSELESQLAearA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 480 EKAQAERLLRELAD------NRLTTVAEKSRVLQLEEELTLRRGEIEELQQcllhsgpppPDHPDAAEILRLRERLLSAS 553
Cdd:COG3206 234 ELAEAEARLAALRAqlgsgpDALPELLQSPVIQQLRAQLAELEAELAELSA---------RYTPNHPDVIALRAQIAALR 304
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1714206204 554 KEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQ 601
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
349-619 |
3.42e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 349 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEialLKAQHEQYVAEAEEKLQRARLL-VESVRKE 427
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---KKMKAEEAKKAEEAKIKAEELKkAEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 428 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLT------TVAE 501
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkkEAEE 1714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 502 KSRVLQLEEELTLRRGEIEELQQcllhsgpPPPDHPDAAEILRLRE----RLLSASKEHQRESGVLRDKYEKALKAYQAE 577
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKK-------EAEEDKKKAEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1714206204 578 VD-KLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDS 619
Cdd:PTZ00121 1788 EDeKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
650-1016 |
3.86e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 650 KAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQLEVQasqhRLELQEAQDQRRDAE 729
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIR----RRESQSQEDLRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 730 LRVHELEkldveyrgqaqAIEFLKEQislaekkMLDYERLQraeaqgkqeVESLREKLLVAENRLQAVEALC----SSQH 805
Cdd:pfam15921 149 NTVHELE-----------AAKCLKED-------MLEDSNTQ---------IEQLRKMMLSHEGVLQEIRSILvdfeEASG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 806 THMIESNDISeeTIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKcksGEKKVDALLKEKR--------RL 877
Cdd:pfam15921 202 KKIYEHDSMS--TMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSE---SQNKIELLLQQHQdrieqlisEH 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 878 EAELETVSRKTHDASGQL------VLISQELLRKERSL------------NELRVLLLEANRHSPGPERDLSREVHKAEW 939
Cdd:pfam15921 277 EVEITGLTEKASSARSQAnsiqsqLEIIQEQARNQNSMymrqlsdlestvSQLRSELREAKRMYEDKIEELEKQLVLANS 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 940 RIKEQK------------LKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELlrlqhqlmsTEDALRDALD----Q 1003
Cdd:pfam15921 357 ELTEARterdqfsqesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSI---------TIDHLRRELDdrnmE 427
|
410
....*....|...
gi 1714206204 1004 AQQVEKLMEAMRS 1016
Cdd:pfam15921 428 VQRLEALLKAMKS 440
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
471-912 |
4.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 4.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 471 GELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLL 550
Cdd:COG4717 63 GRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 551 SASKEHQResgvLRDKYEkALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDHQKSLED 630
Cdd:COG4717 143 ELPERLEE----LEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 631 LKATLNsgpgAQQKEIGELKAVMEGIKMEHQLELGNLQAKhdLETAMHV-----KEKEALREKLQEAQEELAGLQRHWRA 705
Cdd:COG4717 218 AQEELE----ELEEELEQLENELEAAALEERLKEARLLLL--IAAALLAllglgGSLLSLILTIAGVLFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 706 QLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQaqaiefLKEQISLAEKKMLDYERLQRAEAQGKQEVESLRe 785
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP------PDLSPEELLELLDRIEELQELLREAEELEEELQ- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 786 kLLVAENRLQAVEALCSSQHTHMIESN-DISEETIRTKETVEGLQDKLNKRDKEVTALTSQT--EMLRAQVSALESKCKS 862
Cdd:COG4717 365 -LEELEQEIAALLAEAGVEDEEELRAAlEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEE 443
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|
gi 1714206204 863 GEKKVDALLKEKRRLEAELETVSRkthdaSGQLVLISQELLRKERSLNEL 912
Cdd:COG4717 444 LEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELREL 488
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
411-1044 |
4.69e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 4.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 411 EEKLQRARLLVESVRKEKVDlsNQLEEERRKVEDLQFRVEEESitkgdletqtQLEHARIGELEQSLLlekaQAERLLRE 490
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIE--RVLEEYSHQVKDLQRRLNESN----------ELHEKQKFYLRQSVI----DLQTKLQE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 491 LADNRLTTVAEKSRVLQLEEELTLR-RGEIEELQ--QCLlhsgPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDkY 567
Cdd:pfam15921 122 MQMERDAMADIRRRESQSQEDLRNQlQNTVHELEaaKCL----KEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVD-F 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 568 EKALKAYQAEVDKLRAANEKyaqevaglkdKVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKAtlnsgpgaqqkeig 647
Cdd:pfam15921 197 EEASGKKIYEHDSMSTMHFR----------SLGSAISKILRELDTEISYLKGRIFPVEDQLEALKS-------------- 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 648 ELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRHWRAQ----------LEVQASQHRLE 717
Cdd:pfam15921 253 ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymrqlsdLESTVSQLRSE 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 718 LQEAqdqRRDAELRVHELEKldveyrgqaqaieflkeQISLAEKKMLDyERLQRaeAQGKQEVESLREKL--LVAENRLQ 795
Cdd:pfam15921 333 LREA---KRMYEDKIEELEK-----------------QLVLANSELTE-ARTER--DQFSQESGNLDDQLqkLLADLHKR 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 796 AVEALCSSQHTHMIESNDISEETirtkeTVEGLQDKLNKRDKEVtaltsqtEMLRAQVSALESKCKSG-EKKVDALLKEK 874
Cdd:pfam15921 390 EKELSLEKEQNKRLWDRDTGNSI-----TIDHLRRELDDRNMEV-------QRLEALLKAMKSECQGQmERQMAAIQGKN 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 875 RRLE------AELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKE-QKLK 947
Cdd:pfam15921 458 ESLEkvssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQElQHLK 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 948 DDIRGLREKLTGLDKekslsdqrryslidrssapelLRLQhqlMSTEDALRDALdqAQQVEKLMeamrscpdkaQTIGNS 1027
Cdd:pfam15921 538 NEGDHLRNVQTECEA---------------------LKLQ---MAEKDKVIEIL--RQQIENMT----------QLVGQH 581
|
650
....*....|....*..
gi 1714206204 1028 GSANGIHQQDKAQKQED 1044
Cdd:pfam15921 582 GRTAGAMQVEKAQLEKE 598
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
460-803 |
6.93e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 460 ETQTQLEHAR---------IGELEQSLLLEKAQAERllreladnrlttvAEKSRVLqleeeltlrRGEIEELQQCLLhsg 530
Cdd:TIGR02168 176 ETERKLERTRenldrlediLNELERQLKSLERQAEK-------------AERYKEL---------KAELRELELALL--- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 531 ppppdhpdAAEILRLRERLlSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEnmglm 610
Cdd:TIGR02168 231 --------VLRLEELREEL-EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE----- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 611 dnwKSKLDSLASDHQKSLEDLKATLNSGpgaqQKEIGELKAvmegiKMEHQLELGNLQAKHDLETAMHVKEKEALREKLQ 690
Cdd:TIGR02168 297 ---ISRLEQQKQILRERLANLERQLEEL----EAQLEELES-----KLDELAEELAELEEKLEELKEELESLEAELEELE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 691 EAQEELAGLQRHWRAQLEVQAS---QHRLELQEAQDQRRDAELRV----HELEKLDVEYRGQAQAI---EFLKEQISLAE 760
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSkvaQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLeeaELKELQAELEE 444
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1714206204 761 KKML------DYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSS 803
Cdd:TIGR02168 445 LEEEleelqeELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
667-1012 |
7.23e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 7.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 667 LQAKHDLETAmhVKEKEALREKLQEAQEELAGLQRHWRA-QLEVQASQHRLEL-QEAQDQRRDAELRVHELEKLDVEYRG 744
Cdd:COG3096 288 LELRRELFGA--RRQLAEEQYRLVEMARELEELSARESDlEQDYQAASDHLNLvQTALRQQEKIERYQEDLEELTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 745 QAQAIEFLKEQISLAEkkmldyERLQRAEaqgkQEVESLREKLLVAENRL-----------QAVEALCSSQHthMIESND 813
Cdd:COG3096 366 QEEVVEEAAEQLAEAE------ARLEAAE----EEVDSLKSQLADYQQALdvqqtraiqyqQAVQALEKARA--LCGLPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 814 ISEETIrtKETVEGLQDKLNKRDKEVTALT---SQTEMLRAQVS-ALESKCK-SGE-------KKVDALLKEKRRLEAEL 881
Cdd:COG3096 434 LTPENA--EDYLAAFRAKEQQATEEVLELEqklSVADAARRQFEkAYELVCKiAGEversqawQTARELLRRYRSQQALA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 882 ETVSRkthdASGQLvlisQELLRKERSLNELRVLLLEANRHSPGP---ERDLsrEVHKAEWRIKEQKLKDDIRGLREKLT 958
Cdd:COG3096 512 QRLQQ----LRAQL----AELEQRLRQQQNAERLLEEFCQRIGQQldaAEEL--EELLAELEAQLEELEEQAAEAVEQRS 581
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1714206204 959 GLDKEKSLSDQRRYSLIDRssAPELLRLQHQLMSTEDALRDALDQAQQVEKLME 1012
Cdd:COG3096 582 ELRQQLEQLRARIKELAAR--APAWLAAQDALERLREQSGEALADSQEVTAAMQ 633
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
679-1016 |
9.73e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 9.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 679 VKEKEALREKLQEAQEELAGLQRHWRA------QLEVQASQHRLELQEAQDQRRDAE------LRVHELEKLDVEYRGQA 746
Cdd:PRK03918 230 VKELEELKEEIEELEKELESLEGSKRKleekirELEERIEELKKEIEELEEKVKELKelkekaEEYIKLSEFYEEYLDEL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 747 QAIEF----LKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSqhthMIESNDISEE-TIRT 821
Cdd:PRK03918 310 REIEKrlsrLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK----KEELERLKKRlTGLT 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 822 KETVEGLQDKLNKRDKEVTaltSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRL---------EAELETVSRKTHDAS 892
Cdd:PRK03918 386 PEKLEKELEELEKAKEEIE---EEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelteEHRKELLEEYTAELK 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 893 GqlvlISQELLRKERSLNELRVLLleanrhspgpeRDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRY 972
Cdd:PRK03918 463 R----IEKELKEIEEKERKLRKEL-----------RELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1714206204 973 SLIDRssapELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRS 1016
Cdd:PRK03918 528 EKLKE----KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDE 567
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
575-799 |
1.58e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 575 QAEVDKLRAANEKYAQEVAGLKDKVQQATS------ENMGLMDnwkskLDSLASDHQKSLEDLKATLNsgpgAQQKEIGE 648
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVD-----LSEEAKLLLQQLSELESQLA----EARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 649 LKAVMEGIkmEHQLELGNLQAKHDLETAmhvkEKEALREKLQEAQEELAGLQRHWRAQ-LEVQASQHRLELQEAQDQRRD 727
Cdd:COG3206 238 AEARLAAL--RAQLGSGPDALPELLQSP----VIQQLRAQLAELEAELAELSARYTPNhPDVIALRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1714206204 728 AELrvheLEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEA 799
Cdd:COG3206 312 QRI----LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARL 379
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
356-602 |
1.71e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 356 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLLVESVRKEKVDLSNQL 435
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 436 EEERRKVEDL---QFRVEEESITKGDLETQTQLEHARIGELEQSLLLE-KAQAERLLRELAdnrlttvaeksRVLQLEEE 511
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArREQAEELRADLA-----------ELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 512 LTLRRGEIEELQQcllhsgppppdhpdaaEILRLRERLLSASKEHQResgvLRDKYEKALKAYQAEVDKLRAANEKYAQE 591
Cdd:COG4942 169 LEAERAELEALLA----------------ELEEERAALEALKAERQK----LLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|.
gi 1714206204 592 VAGLKDKVQQA 602
Cdd:COG4942 229 IARLEAEAAAA 239
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
659-1016 |
3.18e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 659 EHQLELGNLQA-KHDLETAMHVKEKEALREKLQEAQEELAGLQRHwRAQLEVQASQHRLELQEAQDQRRDAELRVHELEk 737
Cdd:TIGR02169 208 EKAERYQALLKeKREYEGYELLKEKEALERQKEAIERQLASLEEE-LEKLTEEISELEKRLEEIEQLLEELNKKIKDLG- 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 738 lDVEYRGQAQAIEFLKEQIslaekkmldyERLQRAEAQGKQEVESLREKLLVAEnrlqavealcssqhthmiesndisEE 817
Cdd:TIGR02169 286 -EEEQLRVKEKIGELEAEI----------ASLERSIAEKERELEDAEERLAKLE------------------------AE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 818 TIRTKETVEGLQDKLNKRDKEVTALTSQtemlraqvsaleskcksgekkVDALLKEKRRLEAELETVS---RKTHDASGQ 894
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEE---------------------YAELKEELEDLRAELEEVDkefAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 895 LVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEqklkddirgLREKLTGLDKEKSLSDQRRYSL 974
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE---------LEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1714206204 975 I-DRSSA-PELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRS 1016
Cdd:TIGR02169 461 AaDLSKYeQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
515-1024 |
4.46e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 47.44 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 515 RRGEIEELQQCLLHSGPPPPDHPDAAEILRLRE--RLLSASKEHQR----ESGVLRDKYEKALKAYQAEVDKLRAANEKY 588
Cdd:pfam07111 48 RRGRSLELEGSQALSQQAELISRQLQELRRLEEevRLLRETSLQQKmrleAQAMELDALAVAEKAGQAEAEGLRAALAGA 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 589 AQEVAGLKDKVQQATSENMGLMdnwKSKLDSLASDHQKSL-------EDLKATLNSgpgAQQKEIGELKAVMEGIKMEHQ 661
Cdd:pfam07111 128 EMVRKNLEEGSQRELEEIQRLH---QEQLSSLTQAHEEALssltskaEGLEKSLNS---LETKRAGEAKQLAEAQKEAEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 662 LELGNLQAKHDLETAMHV----------------------KEKEALREKLQEAQEELAGLQRHWR-AQLEVQASQHRLEL 718
Cdd:pfam07111 202 LRKQLSKTQEELEAQVTLveslrkyvgeqvppevhsqtweLERQELLDTMQHLQEDRADLQATVElLQVRVQSLTHMLAL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 719 QEAQDQRrdaelRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEA--QGKQEVESLREKLLvAENRLQA 796
Cdd:pfam07111 282 QEEELTR-----KIQPSDSLEPEFPKKCRSLLNRWREKVFALMVQLKAQDLEHRDSvkQLRGQVAELQEQVT-SQSQEQA 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 797 VEALCSSQHTHMIESNDISEETIRTKetVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRR 876
Cdd:pfam07111 356 ILQRALQDKAAEVEVERMSAKGLQME--LSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPS 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 877 LEAELETVSRKTHDASGqlvlisqeLLRKERSLNELRVLLLEANRHSPGPERDLSREVHkaEWRIKEQKLKDDIR---GL 953
Cdd:pfam07111 434 LSNRLSYAVRKVHTIKG--------LMARKVALAQLRQESCPPPPPAPPVDADLSLELE--QLREERNRLDAELQlsaHL 503
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 954 REKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMRSCPDKAQTI 1024
Cdd:pfam07111 504 IQQEVGRAREQGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEI 574
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
340-788 |
4.59e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 340 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERaEVAKATSHICEVEKEIALLKAQHEQYvAEAEEKLQRARL 419
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLEEL-RELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 420 LVESVRKEKVDL--------SNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL--LLEKAQAERLLR 489
Cdd:COG4717 171 ELAELQEELEELleqlslatEEELQDLAEELEELQQRLAE-------LEEELEEAQEELEELEEELeqLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 490 ELADNRLTTVAEKSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEK 569
Cdd:COG4717 244 RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 570 ALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSEN--MGLMDNWKSKLDSLASDHQKSLEDLKATLNsgpgaQQKEIG 647
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVEDEEELRAALE-----QAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 648 ELKAVMEgiKMEHQLELGNLQAKHDLETAmhvkEKEALREKLQEAQEELAGLQRhwraqlevqasqhrlELQEAQDQRRD 727
Cdd:COG4717 399 ELKEELE--ELEEQLEELLGELEELLEAL----DEEELEEELEELEEELEELEE---------------ELEELREELAE 457
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 728 AELRVHELEKlDVEYRGQAQAIEFLKEQISLAEKkmlDYERLQRAEAQGKQEVESLREKLL 788
Cdd:COG4717 458 LEAELEQLEE-DGELAELLQELEELKAELRELAE---EWAALKLALELLEEAREEYREERL 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
747-970 |
5.19e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 747 QAIEFLKEQIslaekkmldyERLQRAEAQGkQEVESLREKLLVAENRLQAVEALCSSQhthmiESNDISEETIRTKETVE 826
Cdd:COG4913 242 EALEDAREQI----------ELLEPIRELA-ERYAAARERLAELEYLRAALRLWFAQR-----RLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 827 GLQDKLNKRDKEVTALTSQTEMLRAQVSAleskckSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKE 906
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1714206204 907 RSLNELRvllLEANRHSPGPERDLSR-EVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQR 970
Cdd:COG4913 380 EEFAALR---AEAAALLEALEEELEAlEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
339-743 |
6.72e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 6.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 339 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDL---ERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 415
Cdd:pfam05483 381 IITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 416 RARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNR 495
Cdd:pfam05483 461 AIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLE 540
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 496 LTTVAEKSRVLQLEEELTLRRGEIeelqQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVlrDKYEKALKAYQ 575
Cdd:pfam05483 541 EKEMNLRDELESVREEFIQKGDEV----KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI--ENKNKNIEELH 614
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 576 AEVDKLRAANEKYAQEVAGLKDKVQQATSEnmglMDNWKSKLDSLASDHQKSLEDLKATlnsgpgaQQKEIGELK----A 651
Cdd:pfam05483 615 QENKALKKKGSAENKQLNAYEIKVNKLELE----LASAKQKFEEIIDNYQKEIEDKKIS-------EEKLLEEVEkakaI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 652 VMEGIKMEHQLELgNLQAKHDLETAMHVKEKEALREKLQEAQEELaGL-------QRHWRAQLEVQASQHRLELQEAQDQ 724
Cdd:pfam05483 684 ADEAVKLQKEIDK-RCQHKIAEMVALMEKHKHQYDKIIEERDSEL-GLyknkeqeQSSAKAALEIELSNIKAELLSLKKQ 761
|
410
....*....|....*....
gi 1714206204 725 rrdAELRVHELEKLDVEYR 743
Cdd:pfam05483 762 ---LEIEKEEKEKLKMEAK 777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
678-886 |
9.16e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 678 HVKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLE-LQEAQDQRRDA--ELRVHELEKLDVEYRGQAQAIEFLKE 754
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEpIRELAERYAAAreRLAELEYLRAALRLWFAQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 755 QISLAEKkmlDYERLQRAEAQGKQEVESLREKLLVAENRL-----QAVEALCSSQHTHMIESNDISEETIRTKETVEGLQ 829
Cdd:COG4913 296 ELEELRA---ELARLEAELERLEARLDALREELDELEAQIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1714206204 830 DKLNKRDKEVTALTSQTEMLRAQVSALESKCksgEKKVDALLKEKRRLEAELETVSR 886
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEAL---EEALAEAEAALRDLRRELRELEA 426
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
658-799 |
9.30e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 658 MEHQLELGNLQAKhDLETAMHVKEKEALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQRRDAELRVHELEK 737
Cdd:COG1579 3 PEDLRALLDLQEL-DSELDRLEHRLKELPAELAELEDELAALEA--------RLEAAKTELEDLEKEIKRLELEIEEVEA 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1714206204 738 LDVEYRGQAQA-------------IEFLKEQISLAEKKMLDY----ERLQRAEAQGKQEVESLREKLLVAENRLQAVEA 799
Cdd:COG1579 74 RIKKYEEQLGNvrnnkeyealqkeIESLKRRISDLEDEILELmeriEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
348-544 |
1.02e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 348 ARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATshicEVEKEIALLKAQHEQYVAEAEEKLQRARLL--VESVR 425
Cdd:PTZ00121 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkAEEDE 1687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 426 KEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLREladnrlttVAEKSRV 505
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD--------EEEKKKI 1759
|
170 180 190
....*....|....*....|....*....|....*....
gi 1714206204 506 LQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILR 544
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
687-1015 |
1.10e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 687 EKLQEAQEELAGLQRHWRAQLE-----VQASQHRLELQEAQDQRRDAELR-VHELEKLDVEYRGQAQAIEFLKEQIslaE 760
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIErlekfIKRTENIEELIKEKEKELEEVLReINEISSELPELREELEKLEKEVKEL---E 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 761 KKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDI---SEETIRTKETVEGLQDKLNKRDK 837
Cdd:PRK03918 235 ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELkekAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 838 EVTALTSQTEMLRAQVSALESKcksgEKKVDALLKEKRRLEAELEtvsrkthdasgqlvlisqELLRKERSLNELRVLLL 917
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLE------------------ELEERHELYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 918 EANRH----SPGPERDLSREVHKAEWRIKEqkLKDDIRGLREKLTGLDKEKS----------------------LSDQRR 971
Cdd:PRK03918 373 ELERLkkrlTGLTPEKLEKELEELEKAKEE--IEEEISKITARIGELKKEIKelkkaieelkkakgkcpvcgreLTEEHR 450
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1714206204 972 YSLIDRSSApELLRLQHQLMSTEDALRDALDQAQQVEKLMEAMR 1015
Cdd:PRK03918 451 KELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKES 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
545-1015 |
1.13e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 545 LRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQatsenmglMDNWKSKLDSLASDH 624
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEE--------LEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 625 QKsLEDLKATLnsgpgAQQKEIGELKAVMEGIkmehQLELGNLQAKHDlETAMHVKEKEALREKLQEAQEELAGLQRHWR 704
Cdd:COG4717 119 EK-LEKLLQLL-----PLYQELEALEAELAEL----PERLEELEERLE-ELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 705 AQLEVQASQHRLELQEAQDQRRDAELRVHELEkldveyrgqaQAIEFLKEQISLAEKKMLDYERLQR-AEAQGKQEVESL 783
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQ----------EELEELEEELEQLENELEAAALEERlKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 784 REKLLVAENRLQAVEA-------------------LCSSQHTHMIESNDISEETIRTKETVEGLQDKLNKRDKEVTALTS 844
Cdd:COG4717 258 LLALLGLGGSLLSLILtiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 845 QTEMLRAQVSALESKCKSGEKKVDALLKE--KRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANrh 922
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEelEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL-- 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 923 spGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRDALD 1002
Cdd:COG4717 416 --GELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWA 493
|
490
....*....|...
gi 1714206204 1003 QAQQVEKLMEAMR 1015
Cdd:COG4717 494 ALKLALELLEEAR 506
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
380-921 |
1.26e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 380 AEVAKATSHICEVEKEIALLKAQHEQYVAEA---EEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITK 456
Cdd:pfam01576 12 EELQKVKERQQKAESELKELEKKHQQLCEEKnalQEQLQAETELCAEAEEMRARLAARKQELEEILHELESRLEEEEERS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 457 GDLETQTQLEHARIGELEQSLLLEKAQAERLlreladnRLTTVAEKSRVLQLEEELTLRRGEIEELQQcllhsgppppDH 536
Cdd:pfam01576 92 QQLQNEKKKMQQHIQDLEEQLDEEEAARQKL-------QLEKVTTEAKIKKLEEDILLLEDQNSKLSK----------ER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 537 PDAAEILRLRERLLSASKEHQRESGVLRDKYEkalkAYQAEVDKLRAANEKYAQEVAGLKDKVQQATSENMGLMDNWKSK 616
Cdd:pfam01576 155 KLLEERISEFTSNLAEEEEKAKSLSKLKNKHE----AMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQ 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 617 LDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEgikmehqLELGNLQAKHDLETAMHVKEK-EALREKLQEaqeE 695
Cdd:pfam01576 231 IAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRE-------LEAQISELQEDLESERAARNKaEKQRRDLGE---E 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 696 LAGLQRHWRAQLEVQASQHRLELQEAQD-----QRRDAELRVHELEKLDVEYRgQAQAIEFLKEQISLAEKKMLDYERlq 770
Cdd:pfam01576 301 LEALKTELEDTLDTTAAQQELRSKREQEvtelkKALEEETRSHEAQLQEMRQK-HTQALEELTEQLEQAKRNKANLEK-- 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 771 raeaqGKQEVESlrekllvaenrlqavealcssqhthmiESNDISEETirtKETVEGLQDKLNKRDKevtaltsqtemLR 850
Cdd:pfam01576 378 -----AKQALES---------------------------ENAELQAEL---RTLQQAKQDSEHKRKK-----------LE 411
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 851 AQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEANR 921
Cdd:pfam01576 412 GQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETR 482
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
339-885 |
1.43e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 339 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAE-AEEKLQRA 417
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEdQNSKLSKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 418 RLLVEsvrKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSlllekaqAERLLRELADNRLT 497
Cdd:pfam01576 154 RKLLE---ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKA-------KRKLEGESTDLQEQ 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 498 TVAEKSRVLQLEEELTLRRgeiEELQQCLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAE 577
Cdd:pfam01576 224 IAELQAQIAELRAQLAKKE---EELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEE 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 578 VDKLRAANEKYAQEVAglkdkVQQatsenmglmdnwkskldSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIK 657
Cdd:pfam01576 301 LEALKTELEDTLDTTA-----AQQ-----------------ELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQAL 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 658 MEHQLELGNLQ-AKHDLEtamhvKEKEALREKLQEAQEELAGLQR------HWRAQLEVQASQHRLELQEAQDQRRDAEL 730
Cdd:pfam01576 359 EELTEQLEQAKrNKANLE-----KAKQALESENAELQAELRTLQQakqdseHKRKKLEGQLQELQARLSESERQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 731 RVH----ELEKLD-VEYRGQAQAIEFLKEQISLaEKKMLDYERLQRAEAQGK-----------QEVESLREKLLVAENRL 794
Cdd:pfam01576 434 KLSklqsELESVSsLLNEAEGKNIKLSKDVSSL-ESQLQDTQELLQEETRQKlnlstrlrqleDERNSLQEQLEEEEEAK 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 795 QAVEALCSSQHTHMIESNDISEEtirTKETVEGLQDKLNKRDKEVTALTSQtemlraqvsaLESKCKSGEKkvdaLLKEK 874
Cdd:pfam01576 513 RNVERQLSTLQAQLSDMKKKLEE---DAGTLEALEEGKKRLQRELEALTQQ----------LEEKAAAYDK----LEKTK 575
|
570
....*....|.
gi 1714206204 875 RRLEAELETVS 885
Cdd:pfam01576 576 NRLQQELDDLL 586
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
431-964 |
1.51e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 431 LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEE 510
Cdd:TIGR04523 45 IKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 511 ELTLRRGEIEElqqcllhsgPPPPDHPDAAEILRLrERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQ 590
Cdd:TIGR04523 125 ELNKLEKQKKE---------NKKNIDKFLTEIKKK-EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKN 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 591 EVAGLKDK---VQQATSENMGLmdnwKSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNL 667
Cdd:TIGR04523 195 KLLKLELLlsnLKKKIQKNKSL----ESQISELKK-QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 668 QAKHdLETAMHVKEKEALREKLQEAQEELAGL----QRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHEL----EKLD 739
Cdd:TIGR04523 270 SEKQ-KELEQNNKKIKELEKQLNQLKSEISDLnnqkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLneqiSQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 740 VEYRGQAQAIEFLKEQIslaEKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEalcssqhthmiESNDISEETI 819
Cdd:TIGR04523 349 KELTNSESENSEKQREL---EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE-----------KLNQQKDEQI 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 820 RTKETveglqdKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLIS 899
Cdd:TIGR04523 415 KKLQQ------EKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQ 488
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1714206204 900 QELLRKERSLNELRvlllEANRHSPGPERDLSREVhkAEWRIKEQKLKDDIRGLREKLTGLDKEK 964
Cdd:TIGR04523 489 KELKSKEKELKKLN----EEKKELEEKVKDLTKKI--SSLKEKIEKLESEKKEKESKISDLEDEL 547
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
358-1046 |
1.84e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.81 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 358 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYvaeaeeklqrarllvESVRKEKVDLSNQLEE 437
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESS---------------REIVKSYENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 438 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKsrvlqlEEELTLRRG 517
Cdd:TIGR00606 253 RLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREK------ERELVDCQR 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 518 EIEELQQcllhsgPPPPDHPDAAEILRLRERLLSASKEHQRESgvLRDKYEKALKAYQAEVDKLRAANEKYAQevaglkd 597
Cdd:TIGR00606 327 ELEKLNK------ERRLLNQEKTELLVEQGRLQLQADRHQEHI--RARDSLIQSLATRLELDGFERGPFSERQ------- 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 598 kvqqatsenmglMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQakhdletam 677
Cdd:TIGR00606 392 ------------IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE--------- 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 678 hvKEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHEL--EKLDVEYRGQAQAIEF---- 751
Cdd:TIGR00606 451 --KKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLqnEKADLDRKLRKLDQEMeqln 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 752 -----LKEQISLAEKKMLDYERLQRAEAQGKQEVESLrekLLVAENRLQAVEALCSsqhthmiESNDISEetirTKETVE 826
Cdd:TIGR00606 529 hhtttRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSL---LGYFPNKKQLEDWLHS-------KSKEINQ----TRDRLA 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 827 GLQDKLNKRDKEVTALTSQTEMLRAQVSALESK------CKSGEKKVDALLKEKRRLEAELETVSRKTH----------D 890
Cdd:TIGR00606 595 KLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRAMLAGATAvysqfitqltD 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 891 ASGQLVLISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKE------------QKLKDDIRGLREKLT 958
Cdd:TIGR00606 675 ENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEmlglapgrqsiiDLKEKEIPELRNKLQ 754
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 959 GLDKEKslsdQRRYSLIDRSSapellRLQHQLMSTEDALRDALDQAQQVEKLMEAMRSCPDK-AQTIGNSGSANGI--HQ 1035
Cdd:TIGR00606 755 KVNRDI----QRLKNDIEEQE-----TLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKiAQQAAKLQGSDLDrtVQ 825
|
730
....*....|.
gi 1714206204 1036 QDKAQKQEDKH 1046
Cdd:TIGR00606 826 QVNQEKQEKQH 836
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
680-887 |
2.23e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 680 KEKEALREKLQEAQEELAGLQR------HWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKldvEYRGQAQAIEFLK 753
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKeekallKQLAALERRIAALARRIRALEQELAALEAELAELEK---EIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 754 EQISlaekKMLDYerLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEETIRTKETVEG----LQ 829
Cdd:COG4942 104 EELA----ELLRA--LYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAeraeLE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1714206204 830 DKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRK 887
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
680-1009 |
2.29e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 680 KEKEALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLA 759
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 760 EKKMLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNdiSEETIRTKETVEGLQDKLNKRDKEV 839
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEEL--KSELLKLERRKVDDEEKLKESEKEK 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 840 TALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKERSLNELRVLLLEa 919
Cdd:pfam02463 324 KKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 920 nrhspgPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRD 999
Cdd:pfam02463 403 ------EEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE 476
|
330
....*....|
gi 1714206204 1000 ALDQAQQVEK 1009
Cdd:pfam02463 477 TQLVKLQEQL 486
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
340-524 |
2.30e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 44.42 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 340 LTETSSRYARKISGTTALQEALKEKQQhieqlLAERDLE--RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEkLQRA 417
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQ-----VTQKNLEhsKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITE-LSCV 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 418 RLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEEsitKGDLETQTQLEHARIGELEQSLllekaqaERLLRELADNRLT 497
Cdd:pfam15905 235 SEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEK---EQELSKQIKDLNEKCKLLESEK-------EELLREYEEKEQT 304
|
170 180
....*....|....*....|....*..
gi 1714206204 498 TVAEksrVLQLEEELTLRRGEIEELQQ 524
Cdd:pfam15905 305 LNAE---LEELKEKLTLEEQEHQKLQQ 328
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
402-755 |
2.71e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 402 QHEQYVAEAEEKLQRARLLVESVRKEKVDLSNQLeEERRKVEdlqfrvEEESITKGDLETQTQL--EHARIGeLEQSLLL 479
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE------EAEKARQAEMDRQAAIyaEQERMA-MEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 480 EKAQAERLLRELADNRLTTVA-EKSRVLQLeEELTLRRGEIEElqqcllhsgppppdhpdaaeilRLRERLlsaskEHQR 558
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAmEISRMREL-ERLQMERQQKNE----------------------RVRQEL-----EAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 559 ESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEvaglkdKVQQATSENMGLMDnwKSKLDSLASDHQksLEDLKatlnsg 638
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQR------EVRRLEEERAREME--RVRLEEQERQQQ--VERLR------ 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 639 pgaqQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEKEALREK---------LQEAQEELAGLQRHWRAQLEV 709
Cdd:pfam17380 467 ----QQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEErkrkllekeMEERQKAIYEEERRREAEEER 542
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1714206204 710 QASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQ 755
Cdd:pfam17380 543 RKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
378-510 |
3.09e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 44.48 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 378 ERAEVAKAtshicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKEKvDLSNQLEEERRKVEDLQFR----VEEES 453
Cdd:COG2268 199 RDARIAEA-----EAERETEIAIAQANREAEEAELEQEREIETARIAEAEA-ELAKKKAEERREAETARAEaeaaYEIAE 272
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1714206204 454 ITKgDLETQTQLEharIGELEQSLLLEKAQAERLLREL-ADNRLTTVAEKSRVLQLEE 510
Cdd:COG2268 273 ANA-EREVQRQLE---IAEREREIELQEKEAEREEAELeADVRKPAEAEKQAAEAEAE 326
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
362-737 |
4.47e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 44.28 E-value: 4.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 362 KEKQQHIEQLLAERDleraevaKATSHICEVEKEIALLKAQHEQYVAEAEEklQRARLLVESVRKE-KVDLSNQLEEERR 440
Cdd:pfam13166 92 IEIQEKIAKLKKEIK-------DHEEKLDAAEANLQKLDKEKEKLEADFLD--ECWKKIKRKKNSAlSEALNGFKYEANF 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 441 KVEDLQfRVEEESITKGDLETQTQLEhARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLE--EELTLRRGE 518
Cdd:pfam13166 163 KSRLLR-EIEKDNFNAGVLLSDEDRK-AALATVFSDNKPEIAPLTFNVIDFDALEKAEILIQKVIGKSSaiEELIKNPDL 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 519 IEELQQCL-LHSGPPPPDHPDAAEILRLRERLLSA-----SKEHQRESGVLRDKYEKALKAYQAEVDKLRA---ANEKYA 589
Cdd:pfam13166 241 ADWVEQGLeLHKAHLDTCPFCGQPLPAERKAALEAhfddeFTEFQNRLQKLIEKVESAISSLLAQLPAVSDlasLLSAFE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 590 QEVAGLKDKVQQATSENMGLMDNWKSKLDSLASDhqKSLEDLKATLNSGPGAQQKeigelkavmegikmehqleLGNLQA 669
Cdd:pfam13166 321 LDVEDIESEAEVLNSQLDGLRRALEAKRKDPFKS--IELDSVDAKIESINDLVAS-------------------INELIA 379
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1714206204 670 KHDLETAMHVKEKEALREKL-----QEAQEELAGLQRHWRAqLEVQASQHRLELQEAQDQRRDAELRVHELEK 737
Cdd:pfam13166 380 KHNEITDNFEEEKNKAKKKLrlhlvEEFKSEIDEYKDKYAG-LEKAINSLEKEIKNLEAEIKKLREEIKELEA 451
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
409-882 |
4.49e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 409 EAEEKLQRARLLVESVRKEKVDLSNQLEE--ERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQslllEKAQAER 486
Cdd:PRK02224 166 EYRERASDARLGVERVLSDQRGSLDQLKAqiEEKEEKDLHERLNG-------LESELAELDEEIERYEE----QREQARE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 487 lLRELADNRLTTVAEKsrvlqlEEELTLRRGEIEELQQCLlhSGPPPPDHPDAAEILRLRERL--LSASKEHQRESGVLR 564
Cdd:PRK02224 235 -TRDEADEVLEEHEER------REELETLEAEIEDLRETI--AETEREREELAEEVRDLRERLeeLEEERDDLLAEAGLD 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 565 DKYEKALKAYQAEVDKLRAANEKYAQEVaglKDKVQQATSENMGLMDNWK------SKLDSLASDHQKSLEDLKATLNSG 638
Cdd:PRK02224 306 DADAEAVEARREELEDRDEELRDRLEEC---RVAAQAHNEEAESLREDADdleeraEELREEAAELESELEEAREAVEDR 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 639 PGAQ---QKEIGELKAVMEGIkmehQLELGNLQAKHDL--ETAMHVKEKEA-LREKLQEAQEELAGLQRHWRA------- 705
Cdd:PRK02224 383 REEIeelEEEIEELRERFGDA----PVDLGNAEDFLEElrEERDELREREAeLEATLRTARERVEEAEALLEAgkcpecg 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 706 -------------QLEVQASQHRLELQEAQDQRRDAELRVHELEKLdveyRGQAQAIEFLKEQISLAEKKMLDyerlQRA 772
Cdd:PRK02224 459 qpvegsphvetieEDRERVEELEAELEDLEEEVEEVEERLERAEDL----VEAEDRIERLEERREDLEELIAE----RRE 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 773 EAQGKQE-VESLREKLLVAENRLQAVEALCSSQH----THMIESNDISEETIRTKETVEGLqDKLNKRDKEVTALTSQTE 847
Cdd:PRK02224 531 TIEEKRErAEELRERAAELEAEAEEKREAAAEAEeeaeEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIE 609
|
490 500 510
....*....|....*....|....*....|....*
gi 1714206204 848 MLRAQVSALESKCKSGEKKVDALLKEKRRLEAELE 882
Cdd:PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEFD 644
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
355-512 |
5.80e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 43.71 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 355 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEEKLQRAR------LLVESVRKEK 428
Cdd:COG2268 212 TEIAIAQANREAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEIAEANaerevqRQLEIAERER 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 429 VDLSNQLEEERRKVEdlqfrVEEESITKGDLETQTQLEHARiGELEQSLLLEKAQAE--RLLRElADNRLTTVAEKSRVL 506
Cdd:COG2268 291 EIELQEKEAEREEAE-----LEADVRKPAEAEKQAAEAEAE-AEAEAIRAKGLAEAEgkRALAE-AWNKLGDAAILLMLI 363
|
....*.
gi 1714206204 507 QLEEEL 512
Cdd:COG2268 364 EKLPEI 369
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
358-870 |
6.36e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 6.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 358 QEALKEKQQHIEQLlAERDLErAEVAKATSHICEVEKEIALLKAQHEQyvaeAEEKLQRARLLVESVRKEKVDLSnQLEE 437
Cdd:PRK02224 186 RGSLDQLKAQIEEK-EEKDLH-ERLNGLESELAELDEEIERYEEQREQ----ARETRDEADEVLEEHEERREELE-TLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 438 ErrkVEDLQFRVEEESITKGDLETQTQLEHARIGELEqslllekaqaERLLRELADNRLTTvAEKSRVLQLEEELTLRRG 517
Cdd:PRK02224 259 E---IEDLRETIAETEREREELAEEVRDLRERLEELE----------EERDDLLAEAGLDD-ADAEAVEARREELEDRDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 518 EIEE-LQQCLLHSGPPPPDHPDAAE-ILRLRERllsaSKEHQRESGVLrdkyEKALKAYQAEVDKLRAANEKYAQEVAGL 595
Cdd:PRK02224 325 ELRDrLEECRVAAQAHNEEAESLREdADDLEER----AEELREEAAEL----ESELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 596 KDKVQQATSEnmglMDNWKSKLDSLASDHQK---SLEDLKATLNS--------------------GPGAQQKEIGELKAV 652
Cdd:PRK02224 397 RERFGDAPVD----LGNAEDFLEELREERDElreREAELEATLRTarerveeaealleagkcpecGQPVEGSPHVETIEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 653 MEGIKMEHQLELGNLQAKHD-----LETAMHVKEKEALREKLQE-----------------AQEELAGLQRHWRAQLEVQ 710
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVEeveerLERAEDLVEAEDRIERLEErredleeliaerretieEKRERAEELRERAAELEAE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 711 ASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQ-RAEAQGKQEVESlREKLLV 789
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLReKREALAELNDER-RERLAE 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 790 AENRLQAVEAlcssqhthMIESNDISE---ETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALES---KCKSG 863
Cdd:PRK02224 632 KRERKRELEA--------EFDEARIEEareDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElreRREAL 703
|
....*..
gi 1714206204 864 EKKVDAL 870
Cdd:PRK02224 704 ENRVEAL 710
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
348-566 |
1.07e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 348 ARKISGTTALQEALKEKQQHIEQLLAErdLERAEVAKATSHicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRKE 427
Cdd:pfam17380 371 AMEISRMRELERLQMERQQKNERVRQE--LEAARKVKILEE--ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAR 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 428 KVDLSNQLEEERR-KVEDLqfRVEEESITKGDLETQTQLEHARIGELEQSLLLEKaqaerllrELADNRLTTVAEKSRVL 506
Cdd:pfam17380 447 EMERVRLEEQERQqQVERL--RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK--------ELEERKQAMIEEERKRK 516
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 507 QLEEELTLRRGEIEELQQcLLHSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDK 566
Cdd:pfam17380 517 LLEKEMEERQKAIYEEER-RREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
358-817 |
1.19e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 358 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVESVRkekvDLSNQLEE 437
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC----PLCGSCIH 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 438 ERRKVEDLQFRVEEESITKGDLETQTQLEHArIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELTLRRG 517
Cdd:TIGR00618 513 PNPARQDIDNPGPLTRRMQRGEQTYAQLETS-EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 518 EIEELQQCLlhsgppppdhpdaAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKD 597
Cdd:TIGR00618 592 ITVRLQDLT-------------EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 598 KVQQATSENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLEtam 677
Cdd:TIGR00618 659 RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA--- 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 678 hvKEKEALREKLQEAQEE---------LAGLQRHWRAQLEVQASQHRLEL-QEAQDQRRDAELRVHELEKLDVEYRGQAQ 747
Cdd:TIGR00618 736 --AREDALNQSLKELMHQartvlkartEAHFNNNEEVTAALQTGAELSHLaAEIQFFNRLREEDTHLLKTLEAEIGQEIP 813
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 748 AIEFLKEqislaekkmLDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEALCSSQHTHMIESNDISEE 817
Cdd:TIGR00618 814 SDEDILN---------LQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQL 874
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
420-788 |
1.34e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 420 LVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGdletqTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 499
Cdd:PRK04863 787 RIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIG-----SHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 500 AEKSRVLQLEEELTLrrgeieeLQQCLLHSGPPPPDHPDAaEILRLRERLLSASkehqrESGVLRDKYEKALKAYQAEVD 579
Cdd:PRK04863 862 QQRSQLEQAKEGLSA-------LNRLLPRLNLLADETLAD-RVEEIREQLDEAE-----EAKRFVQQHGNALAQLEPIVS 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 580 KLRAANEKYAQevagLKDKVQQATSEnmglMDNWKSKLDSLASDHQK----SLEDLKATLNSGPGAQQKEIGELKAvMEG 655
Cdd:PRK04863 929 VLQSDPEQFEQ----LKQDYQQAQQT----QRDAKQQAFALTEVVQRrahfSYEDAAEMLAKNSDLNEKLRQRLEQ-AEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 656 IKMEHQLELGNLQAKHDLETAMHVKEK---EALREKLQEAQEELAGLQRHWRAQLEVQASQHRLELQE---AQDQRRDA- 728
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKssyDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHArlsANRSRRNQl 1079
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1714206204 729 -------ELRVHELEK----LDVEYRGQAQAIEFLKEQISLAEKKMLDY---ERLQRAEA--QGKQEVESLREKLL 788
Cdd:PRK04863 1080 ekqltfcEAEMDNLTKklrkLERDYHEMREQVVNAKAGWCAVLRLVKDNgveRRLHRRELayLSADELRSMSDKAL 1155
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
707-957 |
1.39e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 707 LEVQASQHRLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERlQRAEAqgKQEVESLREK 786
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER-EREEL--AEEVRDLRER 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 787 LLVAENRLQAVEALCSsqhthmIESNDIseetirtkETVEGLQDKLNKRDKEV-----------TALTSQTEMLRAQVSA 855
Cdd:PRK02224 288 LEELEEERDDLLAEAG------LDDADA--------EAVEARREELEDRDEELrdrleecrvaaQAHNEEAESLREDADD 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 856 LESKCKsgEKKVDAllkekRRLEAELETVSRKTHDASGQLvlisqELLRKERSLNELRVLLLEANRHSPGPERDLSREvH 935
Cdd:PRK02224 354 LEERAE--ELREEA-----AELESELEEAREAVEDRREEI-----EELEEEIEELRERFGDAPVDLGNAEDFLEELRE-E 420
|
250 260
....*....|....*....|..
gi 1714206204 936 KAEWRIKEQKLKDDIRGLREKL 957
Cdd:PRK02224 421 RDELREREAELEATLRTARERV 442
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
496-759 |
1.45e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 496 LTTVAEKSRVLQLEEELTLRRGEIEELQQCLlhSGPPPPDHPDAAEILRLRERLLSASKEHQresgvlrdKYEKALKAYQ 575
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIR--------ALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 576 AEVDKLRAANEKYAQEVAGLKDKVQQ--ATSENMGLMDNWKSKLDS-LASDHQKSLEDLKATLNsgpgAQQKEIGELKAV 652
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEELAEllRALYRLGRQPPLALLLSPeDFLDAVRRLQYLKYLAP----ARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 653 MEGIKmehQLELGNLQAKHDLETAMhvKEKEALREKLQEAQEELAGLQrhwrAQLEVQASQHRLELQEAQDQRRDAELRV 732
Cdd:COG4942 159 LAELA---ALRAELEAERAELEALL--AELEEERAALEALKAERQKLL----ARLEKELAELAAELAELQQEAEELEALI 229
|
250 260
....*....|....*....|....*..
gi 1714206204 733 HELEKLDVEYRGQAQAIEFLKEQISLA 759
Cdd:COG4942 230 ARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
357-702 |
1.57e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 357 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLL---VESVRKEKVDLSN 433
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLekeIERLKETIIKNNS 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 434 QLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSL-------------LLEKAQAERLLRELADNRLTTVA 500
Cdd:TIGR04523 441 EIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLeqkqkelkskekeLKKLNEEKKELEEKVKDLTKKIS 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 501 E-KSRVLQLEEELTLRRGEIEELQQCLLHSGPPPPDHPDAAEILRLRERlLSASKEHQRESGVLRDKYEKALKAYQAEVD 579
Cdd:TIGR04523 521 SlKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKE-IEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 580 KLRAANEKYAQEVAGLKDKVQQATSENMGL---MDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKAVMEGI 656
Cdd:TIGR04523 600 DLIKEIEEKEKKISSLEKELEKAKKENEKLssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDII 679
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1714206204 657 K-MEHQLELGNLQAKHDLETAMHVKEKEALREKLQEAQEELAGLQRH 702
Cdd:TIGR04523 680 ElMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
411-985 |
1.92e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 411 EEKLQRARLLVESVRKekvdlsnQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELeQSLLLEKAQAERLLRE 490
Cdd:PRK01156 189 EEKLKSSNLELENIKK-------QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL-SSLEDMKNRYESEIKT 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 491 lADNRLTTVAEKSRVLQleeELTLRRGEIEelqqcllhSGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLrDKYEKA 570
Cdd:PRK01156 261 -AESDLSMELEKNNYYK---ELEERHMKII--------NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEI-NKYHAI 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 571 LKAYqAEVDKLRAANEKYAQEvaglKDKVQQATSENMGLMDNWKSKLDSLAS------DHQKSLEDLKATLNSGPGAQQK 644
Cdd:PRK01156 328 IKKL-SVLQKDYNDYIKKKSR----YDDLNNQILELEGYEMDYNSYLKSIESlkkkieEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 645 EIGELKAVMEGIK---MEHQLELGNLQAKhdletamhvkeKEALREKLQEAQEELAGLQRHWR-----AQLEVQASQHRL 716
Cdd:PRK01156 403 DPDAIKKELNEINvklQDISSKVSSLNQR-----------IRALRENLDELSRNMEMLNGQSVcpvcgTTLGEEKSNHII 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 717 ELQEAQDQRRDAELRVHELE--KLDVEYRGQAQAIEFL-KEQIslaEKKMLDYERLQRAEAQGKQEVESLREkLLVAENR 793
Cdd:PRK01156 472 NHYNEKKSRLEEKIREIEIEvkDIDEKIVDLKKRKEYLeSEEI---NKSINEYNKIESARADLEDIKIKINE-LKDKHDK 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 794 LQAVEALCSSQHTHMIESNDIS---EETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDAL 870
Cdd:PRK01156 548 YEEIKNRYKSLKLEDLDSKRTSwlnALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 871 L-------KEKRRLEAELETVSRKTHDASGQlvliSQELLRKERSLNELRVLLLEANRHSPGPERDLSR-EVHKAEWRIK 942
Cdd:PRK01156 628 AnnlnnkyNEIQENKILIEKLRGKIDNYKKQ----IAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDaKANRARLEST 703
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1714206204 943 EQKLKDDIRGLREKLTGLDK--------EKSLSDQRRY-SLIDRSSAPELLR 985
Cdd:PRK01156 704 IEILRTRINELSDRINDINEtlesmkkiKKAIGDLKRLrEAFDKSGVPAMIR 755
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
678-1022 |
2.21e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 678 HVKEKEALREKLQEAQ--------EELAGLQRHWR------------AQLEVQASQHRLELQEAQD---QRRDAELRVHE 734
Cdd:pfam12128 266 GYKSDETLIASRQEERqetsaelnQLLRTLDDQWKekrdelngelsaADAAVAKDRSELEALEDQHgafLDADIETAAAD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 735 LEKLD---VEYRGQAQAIEFLKEQISLAEKKmldYERL-QRAEAQGKQEVESLREKL-----------LVAENRLQAVEA 799
Cdd:pfam12128 346 QEQLPswqSELENLEERLKALTGKHQDVTAK---YNRRrSKIKEQNNRDIAGIKDKLakireardrqlAVAEDDLQALES 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 800 LCSSQHTHMIesNDISEETIRTKETVEGLQDKLNkrdkEVTAltsqTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEA 879
Cdd:pfam12128 423 ELREQLEAGK--LEFNEEEYRLKSRLGELKLRLN----QATA----TPELLLQLENFDERIERAREEQEAANAEVERLQS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 880 ELETVSRKTHDASGQLVLISQELLRKERSLNELRvLLLEANRHSpgPERDLSREVhkAEWRIKEQKLKDDIRGLREKLTG 959
Cdd:pfam12128 493 ELRQARKRRDQASEALRQASRRLEERQSALDELE-LQLFPQAGT--LLHFLRKEA--PDWEQSIGKVISPELLHRTDLDP 567
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 960 LDKEKSLSDQRR-YSL---IDRSSAPELLRLQHQLMS----TEDALRDALDQAQQVEKLMEAMRSCPDKAQ 1022
Cdd:pfam12128 568 EVWDGSVGGELNlYGVkldLKRIDVPEWAASEEELRErldkAEEALQSAREKQAAAEEQLVQANGELEKAS 638
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
333-522 |
2.26e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 333 RPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVE---KEIALLKAQHEQYVAE 409
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAgrlREVTLEGEGGSAGGSL 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 410 AEEKLQRARLLVESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLR 489
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
170 180 190
....*....|....*....|....*....|....*..
gi 1714206204 490 ELADNRLTTVAEKSRVL----QLEEELTLRRGEIEEL 522
Cdd:COG1196 743 EEEELLEEEALEELPEPpdleELERELERLEREIEAL 779
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
357-512 |
2.30e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 357 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIallkAQHEQYVAEAEEKLQRARLLVESVRKEK--VDLSNQ 434
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQLGNVRNNKeyEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1714206204 435 LEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVL-QLEEEL 512
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAaKIPPEL 176
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
357-902 |
2.56e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 357 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEK--------LQRARL-LVESVRKE 427
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIqknidkikNKLLKLeLLLSNLKK 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 428 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEharIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQ 507
Cdd:TIGR04523 209 KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTE---ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 508 LEEELTLRRGEIEELQQcllhsGPPPPDHPDAAEILRLRERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEK 587
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNN-----QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 588 YAQEVAGLKDKVQQATSENmglmdnwKSKLDSLasdhqKSLEDLKATLNSGPGAQQKEIGELKAVMEGIKMEHQL---EL 664
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKEN-------QSYKQEI-----KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELlekEI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 665 GNLQAK--------HDLETAMHVKEKEAlreklqeaqEELAGLQRHWRAQLEVQASQHRLELQEAQDQRRDAELRVHELE 736
Cdd:TIGR04523 429 ERLKETiiknnseiKDLTNQDSVKELII---------KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 737 KLDVEYRGQAQAIEFLKEQISLAEKKMldyERLQRAEAQGKQEVESLREKLLVAENRLQavealcSSQHTHMIESNDisE 816
Cdd:TIGR04523 500 KLNEEKKELEEKVKDLTKKISSLKEKI---EKLESEKKEKESKISDLEDELNKDDFELK------KENLEKEIDEKN--K 568
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 817 ETIRTKETVEGLQDKLNKRDKEVTALTSQTEMLRAQVSALESKCKSGEKKVDALLKEKRRLEAELETVSRKTHDASGQLV 896
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
....*.
gi 1714206204 897 LISQEL 902
Cdd:TIGR04523 649 QIKETI 654
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
405-1016 |
4.44e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 405 QYVAEAEEKLQRARLLVESVrKEKVDLSNQLEEERRKVEDLQfRVEEesitkgdleTQTQLEHARIGELEQSLLLEKAQA 484
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHF-DDLERAHEALEDAREQIELLE-PIRE---------LAERYAAARERLAELEYLRAALRL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 485 ERLLRELAdnrlttvAEKSRVLQLEEELTLRRGEIEELQQcllhsgppppdhpdaaEILRLRERLLSASKEHQRESGVLR 564
Cdd:COG4913 284 WFAQRRLE-------LLEAELEELRAELARLEAELERLEA----------------RLDALREELDELEAQIRGNGGDRL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 565 DKYEKALKAYQAEVDKLRAANEKYAQEVAGLKdkVQQATSEnmglmdnwkskldslasdhqkslEDLKAtlnsgpgaQQK 644
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALLAALG--LPLPASA-----------------------EEFAA--------LRA 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 645 EIGELKAVMEGIKMEHQlelgnlQAKHDLETAmhvkeKEALREKLQEAQEELAGLQRhwraqlevQASQHRLELQEAQDQ 724
Cdd:COG4913 388 EAAALLEALEEELEALE------EALAEAEAA-----LRDLRRELRELEAEIASLER--------RKSNIPARLLALRDA 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 725 -RRDAELRVHEL----EKLDVE-------------YRGQA-----------QAIEFLkEQISLAEKkmLDYERLQRAEAQ 775
Cdd:COG4913 449 lAEALGLDEAELpfvgELIEVRpeeerwrgaiervLGGFAltllvppehyaAALRWV-NRLHLRGR--LVYERVRTGLPD 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 776 GKQEV---ESLREKLLVAENRLQA-VEALCSSQHTHM-IESndiSEETIRTKE--TVEGL-------------------- 828
Cdd:COG4913 526 PERPRldpDSLAGKLDFKPHPFRAwLEAELGRRFDYVcVDS---PEELRRHPRaiTRAGQvkgngtrhekddrrrirsry 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 829 ------QDKLNKRDKEVTALTSQTEMLRAQVSALESKCKS----------------GEKKVDALLKEKRRLEAELETVSr 886
Cdd:COG4913 603 vlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDAlqerrealqrlaeyswDEIDVASAEREIAELEAELERLD- 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 887 kthDASGQLVLISQELLRKERSLNELRVLLLEANRHspgpERDLSREVHKAEwriKEQKLKDDIRGLREKLTGLDKEKSL 966
Cdd:COG4913 682 ---ASSDDLAALEEQLEELEAELEELEEELDELKGE----IGRLEKELEQAE---EELDELQDRLEAAEDLARLELRALL 751
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1714206204 967 SDQRRYSLIDRSSAPELLRLQHQLmsteDALRDALDQAQqvEKLMEAMRS 1016
Cdd:COG4913 752 EERFAAALGDAVERELRENLEERI----DALRARLNRAE--EELERAMRA 795
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
547-833 |
4.70e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.99 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 547 ERLLSASKEHQRESGVLRDKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKVQQatsenmglMDNWKSKLDSL-ASDH- 624
Cdd:pfam06160 110 DELLESEEKNREEVEELKDKYRELRKTLLANRFSYGPAIDELEKQLAEIEEEFSQ--------FEELTESGDYLeAREVl 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 625 ---QKSLEDLKATLNSGPG----------AQQKEIGEL--KAVMEGIKMEH---QLELGNLQAKHD-LETAMHVKEKEAL 685
Cdd:pfam06160 182 eklEEETDALEELMEDIPPlyeelktelpDQLEELKEGyrEMEEEGYALEHlnvDKEIQQLEEQLEeNLALLENLELDEA 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 686 REKLQEAQEELAGL----QRHWRAQLEVQASQHRLE--LQEAQDQRRDAELrvhELEKLDVEYRGQAQAIEF---LKEQI 756
Cdd:pfam06160 262 EEALEEIEERIDQLydllEKEVDAKKYVEKNLPEIEdyLEHAEEQNKELKE---ELERVQQSYTLNENELERvrgLEKQL 338
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1714206204 757 SLAEKkmlDYERLQRAEAQGKQEVESLREKLLVAENRLQAVEAlcssQHTHMIES-NDISEETIRTKETVEGLQDKLN 833
Cdd:pfam06160 339 EELEK---RYDEIVERLEEKEVAYSELQEELEEILEQLEEIEE----EQEEFKESlQSLRKDELEAREKLDEFKLELR 409
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
554-787 |
5.46e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.77 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 554 KEHQRESGVL---RDKYEKALKAYQAEVDKLRAANekyAQEVAGLKDKVqqatSENMGLMDNWKSKLDSLA---SDHQKS 627
Cdd:PHA02562 177 RELNQQIQTLdmkIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKY----DELVEEAKTIKAEIEELTdelLNLVMD 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 628 LEDLKATLNsgpgAQQKEIGELKAVMEGIKMEHqlelgNLQAKHDL-ETAMHVKEKEAlrEKLQEAQEELAGLQrhwraq 706
Cdd:PHA02562 250 IEDPSAALN----KLNTAAAKIKSKIEQFQKVI-----KMYEKGGVcPTCTQQISEGP--DRITKIKDKLKELQ------ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 707 levqasqhrLELQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYER-LQRAEAQG---KQEVES 782
Cdd:PHA02562 313 ---------HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAaIEELQAEFvdnAEELAK 383
|
....*
gi 1714206204 783 LREKL 787
Cdd:PHA02562 384 LQDEL 388
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
767-1008 |
5.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 5.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 767 ERLQRAEAQGKQEVESLREKLLVAENRLQAvealcssqhthMIESNDIseetIRTKETVEGLQDKLNKRDKEVTALTSQT 846
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEE-----------FRQKNGL----VDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 847 EMLRAQVSALESKCKSGEKKVDALLkekrrleaeletvsrkthdASGQLVLISQELLRKERSLNELRVLLLEANrhspgP 926
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELL-------------------QSPVIQQLRAQLAELEAELAELSARYTPNH-----P 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 927 E-RDLSREVHKAEWRIKEQ------KLKDDIRGLREKLTGLdkEKSLSDQRRYSLIDRSSAPELLRLQHQLMSTEDALRD 999
Cdd:COG3206 292 DvIALRAQIAALRAQLQQEaqrilaSLEAELEALQAREASL--QAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
....*....
gi 1714206204 1000 ALDQAQQVE 1008
Cdd:COG3206 370 LLQRLEEAR 378
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
391-512 |
6.78e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.45 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 391 EVEKEIALLKAQHEQYVAEAEEKLQrARLlvESVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQtqleHARI 470
Cdd:COG0542 415 ELERRLEQLEIEKEALKKEQDEASF-ERL--AELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQR----YGKI 487
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 471 GELEQSLLLEKAQAE---RLLRELAD----------------NRLTTvAEKSRVLQLEEEL 512
Cdd:COG0542 488 PELEKELAELEEELAelaPLLREEVTeediaevvsrwtgipvGKLLE-GEREKLLNLEEEL 547
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
850-1027 |
7.53e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 850 RAQVSALEskcksgekKVDALLKEKRRLEAELETVSRKTHDASGQLVLISQELLRKE---RSLNELRVLLLEANRHSPGP 926
Cdd:PLN02939 149 QARLQALE--------DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEileEQLEKLRNELLIRGATEGLC 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 927 ERDLSREVHKaewrIKEQK--LKDDIRGLREKLTG----------LDKEKSLSDQRRYSLIDR--SSAPELLRL----QH 988
Cdd:PLN02939 221 VHSLSKELDV----LKEENmlLKDDIQFLKAELIEvaeteervfkLEKERSLLDASLRELESKfiVAQEDVSKLsplqYD 296
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1714206204 989 QLMSTEDALRDALDQA-QQVEK---LMEAMRSCPDKAQTIGNS 1027
Cdd:PLN02939 297 CWWEKVENLQDLLDRAtNQVEKaalVLDQNQDLRDKVDKLEAS 339
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
565-705 |
7.85e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 39.66 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 565 DKYEKALKAYQAEVDKLRAANEKYAQEVAGLKDKV---QQATSENMGLMDNWKSKLDSLASDH-----QKSLEDLKATLN 636
Cdd:cd22656 110 EELEEAKKTIKALLDDLLKEAKKYQDKAAKVVDKLtdfENQTEKDQTALETLEKALKDLLTDEggaiaRKEIKDLQKELE 189
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1714206204 637 SgpgAQQKEIGELKAVMEGIKMEHQLELGNLQAKHDLETAMHVKEK--EALREKLQEAQEELAGLQRHWRA 705
Cdd:cd22656 190 K---LNEEYAAKLKAKIDELKALIADDEAKLAAALRLIADLTAADTdlDNLLALIGPAIPALEKLQGAWQA 257
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
472-1004 |
9.54e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 472 ELEQSLLLEKAQAErLLRELADNRLTTVAEKSRVLQLEEEltlrrgEIEELQQCLLHSgppPPDHPDAAEILRLRERLLS 551
Cdd:TIGR00618 191 SLHGKAELLTLRSQ-LLTLCTPCMPDTYHERKQVLEKELK------HLREALQQTQQS---HAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 552 ASKEHQRESGVLRDKyEKALKAYQAEVDKLRAAnEKYAQEVAGLKDKVQQATSENMGLmdnwKSKLDSLASDHQKSLEDL 631
Cdd:TIGR00618 261 LLKQLRARIEELRAQ-EAVLEETQERINRARKA-APLAAHIKAVTQIEQQAQRIHTEL----QSKMRSRAKLLMKRAAHV 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 632 KATLNSGPgaQQKEIGELKAVMEGIKMEHQLELGNLQAK---HDLETAMHV--KEKEALREKLQEAQEELAGLQRHWRAQ 706
Cdd:TIGR00618 335 KQQSSIEE--QRRLLQTLHSQEIHIRDAHEVATSIREIScqqHTLTQHIHTlqQQKTTLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 707 LEVQASQH-------RLELQEAQDQRRDAELRVHELEKL------DVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAE 773
Cdd:TIGR00618 413 DTRTSAFRdlqgqlaHAKKQQELQQRYAELCAAAITCTAqcekleKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 774 AQGKQEVESLREKLlvaenrlqavEALCSSQHTHMIESNDISEETIRTK---ETVEGLQDKLNKRDKEVTALTSQTEMLR 850
Cdd:TIGR00618 493 LARLLELQEEPCPL----------CGSCIHPNPARQDIDNPGPLTRRMQrgeQTYAQLETSEEDVYHQLTSERKQRASLK 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 851 AQV-------SALESKCKSGEKKVDALLKEKRRLEAELETVSRkthdASGQLVLISQELLRK-ERSLNELRVLLLEANR- 921
Cdd:TIGR00618 563 EQMqeiqqsfSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSE----AEDMLACEQHALLRKlQPEQDLQDVRLHLQQCs 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1714206204 922 --------HSPGPERDLSREVHKAEW-RIKEQKLKDDIRGLREkltgLDKEKSLSDQRRYSLIDRSSAPELLRLQHQLMS 992
Cdd:TIGR00618 639 qelalkltALHALQLTLTQERVREHAlSIRVLPKELLASRQLA----LQKMQSEKEQLTYWKEMLAQCQTLLRELETHIE 714
|
570
....*....|..
gi 1714206204 993 TEDALRDALDQA 1004
Cdd:TIGR00618 715 EYDREFNEIENA 726
|
|
| |
