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Conserved domains on  [gi|4503179|ref|NP_003602|]
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centriole and centriolar satellite protein OFD1 isoform 1 [Homo sapiens]

Protein Classification

LisH_2 and Smc domain-containing protein( domain architecture ID 13870895)

LisH_2 and Smc domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 273-556 8.28e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.11  E-value: 8.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   273 KHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNEL-- 350
Cdd:COG1196  214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYel 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   351 ----------LKYQLELKDDYIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQsvnRVKELELELESVKAQSLAI 420
Cdd:COG1196  294 laelarleqdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEA 370

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   421 TKQnhmLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQpapELAVFQKELRKAEKAIVVEHEEF 500
Cdd:COG1196  371 EAE---LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE---ELEELEEALAELEEEEEEEEEAL 444

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 4503179   501 ESCRQALHKQLQDEIEH---SAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTALENE 556
Cdd:COG1196  445 EEAAEEEAELEEEEEALlelLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
LisH_2 pfam16045
LisH;
75-101 9.47e-11

LisH;


:

Pssm-ID: 464992  Cd Length: 28  Bit Score: 57.09  E-value: 9.47e-11
                           10        20
                   ....*....|....*....|....*..
gi 4503179      75 NSLVADHLQRCGYEYSLSVFFPESGLA 101
Cdd:pfam16045    2 NSLIAEYLQSQGYNYTLSVFLPESGLA 28
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 273-556 8.28e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.11  E-value: 8.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   273 KHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNEL-- 350
Cdd:COG1196  214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYel 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   351 ----------LKYQLELKDDYIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQsvnRVKELELELESVKAQSLAI 420
Cdd:COG1196  294 laelarleqdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEA 370

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   421 TKQnhmLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQpapELAVFQKELRKAEKAIVVEHEEF 500
Cdd:COG1196  371 EAE---LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE---ELEELEEALAELEEEEEEEEEAL 444

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 4503179   501 ESCRQALHKQLQDEIEH---SAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTALENE 556
Cdd:COG1196  445 EEAAEEEAELEEEEEALlelLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
LisH_2 pfam16045
LisH;
75-101 9.47e-11

LisH;


Pssm-ID: 464992  Cd Length: 28  Bit Score: 57.09  E-value: 9.47e-11
                           10        20
                   ....*....|....*....|....*..
gi 4503179      75 NSLVADHLQRCGYEYSLSVFFPESGLA 101
Cdd:pfam16045    2 NSLIAEYLQSQGYNYTLSVFLPESGLA 28
PTZ00121 PTZ00121
MAEBL; Provisional
 199-522 9.80e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.22  E-value: 9.80e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    199 KLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAKSEALVLRE----KSTLERIHKH 274
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeaKKKAEEAKKA 1446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    275 QEIETKEIYAQRQLLLKDMDLLRGREAELKQRVE----AFELNQKLQEEKHKSitEALRRQEQNIKSFEE---------- 340
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEeakkADEAKKKAEEAKKKA--DEAKKAAEAKKKADEakkaeeakka 1524

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    341 -----TYDRKLKNELLKYQLELKDDYIIRTNRLIEDERKNK-EKAVHLQEELIAINSKKEELNQS----VNRVKELELEL 410
Cdd:PTZ00121 1525 deakkAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaEEAKKAEEDKNMALRKAEEAKKAeearIEEVMKLYEEE 1604

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    411 ESVKAQSLAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLA-------QPAPELAVFQ 483
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAkkaeedkKKAEEAKKAE 1684

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 4503179    484 KELRKAEKAIVVEHEEFESCRQaLHKQLQDEIEHSAQLK 522
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKAEE-LKKKEAEEKKKAEELK 1722
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 261-554 1.71e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 52.37  E-value: 1.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     261 VLRE-KSTLERIHKHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIkSFE 339
Cdd:TIGR02168  194 ILNElERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL-EEL 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     340 ETYDRKLKNELLKYQLELKDdYIIRTNRLIEDERKNKEKAVHLQEELIAIN-------SKKEELNQSVNRVKElelELES 412
Cdd:TIGR02168  273 RLEVSELEEEIEELQKELYA-LANEISRLEQQKQILRERLANLERQLEELEaqleeleSKLDELAEELAELEE---KLEE 348

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     413 VKAQSLAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQN-KLLKQQLEESRNENLRLLNRLAQPAPELAVFQKELRKAEK 491
Cdd:TIGR02168  349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4503179     492 AIVVE-----HEEFESCRQALHKQLQDEIEHSAQLKAQilgyKASVKSLTTQVADLKLQLKQTQTALE 554
Cdd:TIGR02168  429 KLEEAelkelQAELEELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQARLD 492
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 198-434 3.06e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 3.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     198 IKLNEYKREIEEQLRAEMCQKLKffKDTEIAKIKMEAKKKYEK-----ELTMFQNDFEKACQAKsealVLREKSTLERIH 272
Cdd:pfam17380  353 IRQEERKRELERIRQEEIAMEIS--RMRELERLQMERQQKNERvrqelEAARKVKILEEERQRK----IQQQKVEMEQIR 426

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     273 KHQEiETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQklQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLK 352
Cdd:pfam17380  427 AEQE-EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ--QEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     353 yqlelkddyiiRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNRVKELEL-ELESVKAQSLAITKQNHMLN--E 429
Cdd:pfam17380  504 -----------RKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMeERRRIQEQMRKATEERSRLEamE 572


                   ....*
gi 4503179     430 KVKEM 434
Cdd:pfam17380  573 REREM 577
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 273-556 8.28e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 66.11  E-value: 8.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   273 KHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNEL-- 350
Cdd:COG1196  214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYel 293

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   351 ----------LKYQLELKDDYIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQsvnRVKELELELESVKAQSLAI 420
Cdd:COG1196  294 laelarleqdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE---ELEEAEAELAEAEEALLEA 370

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   421 TKQnhmLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQpapELAVFQKELRKAEKAIVVEHEEF 500
Cdd:COG1196  371 EAE---LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE---ELEELEEALAELEEEEEEEEEAL 444

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 4503179   501 ESCRQALHKQLQDEIEH---SAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTALENE 556
Cdd:COG1196  445 EEAAEEEAELEEEEEALlelLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
LisH_2 pfam16045
LisH;
75-101 9.47e-11

LisH;


Pssm-ID: 464992  Cd Length: 28  Bit Score: 57.09  E-value: 9.47e-11
                           10        20
                   ....*....|....*....|....*..
gi 4503179      75 NSLVADHLQRCGYEYSLSVFFPESGLA 101
Cdd:pfam16045    2 NSLIAEYLQSQGYNYTLSVFLPESGLA 28
PTZ00121 PTZ00121
MAEBL; Provisional
 199-522 9.80e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 53.22  E-value: 9.80e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    199 KLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAKSEALVLRE----KSTLERIHKH 274
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeaKKKAEEAKKA 1446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    275 QEIETKEIYAQRQLLLKDMDLLRGREAELKQRVE----AFELNQKLQEEKHKSitEALRRQEQNIKSFEE---------- 340
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEeakkADEAKKKAEEAKKKA--DEAKKAAEAKKKADEakkaeeakka 1524

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    341 -----TYDRKLKNELLKYQLELKDDYIIRTNRLIEDERKNK-EKAVHLQEELIAINSKKEELNQS----VNRVKELELEL 410
Cdd:PTZ00121 1525 deakkAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaEEAKKAEEDKNMALRKAEEAKKAeearIEEVMKLYEEE 1604

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    411 ESVKAQSLAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLA-------QPAPELAVFQ 483
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAkkaeedkKKAEEAKKAE 1684

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 4503179    484 KELRKAEKAIVVEHEEFESCRQaLHKQLQDEIEHSAQLK 522
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKAEE-LKKKEAEEKKKAEELK 1722
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
264-556 9.99e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 52.76  E-value: 9.99e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    264 EKSTLERIHKHQEIETKEIYAQRQL-----LLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSF 338
Cdd:PRK03918  199 EKELEEVLREINEISSELPELREELeklekEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    339 EETYDR--KLKNELLKYQL--ELKDDYIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNRVKELELELESVK 414
Cdd:PRK03918  279 EEKVKElkELKEKAEEYIKlsEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE 358

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    415 AQSLAItkqnHMLNEKVKEMSDYSLLKEEKLELLAQNKLL-----KQQLEESRNENLRLLNRLAQPAPELAVFQKELRKA 489
Cdd:PRK03918  359 ERHELY----EEAKAKKEELERLKKRLTGLTPEKLEKELEelekaKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4503179    490 EKAIVVeheefesCRQALHKQLQDEIehSAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTALENE 556
Cdd:PRK03918  435 KGKCPV-------CGRELTEEHRKEL--LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 261-554 1.71e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 52.37  E-value: 1.71e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     261 VLRE-KSTLERIHKHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIkSFE 339
Cdd:TIGR02168  194 ILNElERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL-EEL 272

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     340 ETYDRKLKNELLKYQLELKDdYIIRTNRLIEDERKNKEKAVHLQEELIAIN-------SKKEELNQSVNRVKElelELES 412
Cdd:TIGR02168  273 RLEVSELEEEIEELQKELYA-LANEISRLEQQKQILRERLANLERQLEELEaqleeleSKLDELAEELAELEE---KLEE 348

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     413 VKAQSLAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQN-KLLKQQLEESRNENLRLLNRLAQPAPELAVFQKELRKAEK 491
Cdd:TIGR02168  349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 4503179     492 AIVVE-----HEEFESCRQALHKQLQDEIEHSAQLKAQilgyKASVKSLTTQVADLKLQLKQTQTALE 554
Cdd:TIGR02168  429 KLEEAelkelQAELEELEEELEELQEELERLEEALEEL----REELEEAEQALDAAERELAQLQARLD 492
PTZ00121 PTZ00121
MAEBL; Provisional
 202-492 8.52e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 50.14  E-value: 8.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    202 EYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEK-----ELTMFQNDFEKACQAKSEALVLREKSTLERIHKHQE 276
Cdd:PTZ00121 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEernneEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE 1288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    277 IETKEiYAQRQLLLKDMDLLRgREAELKQRVEafELNQKLQEEKHKSitEALRRQEQniksfeetyDRKLKNELLKYQLE 356
Cdd:PTZ00121 1289 KKKAD-EAKKAEEKKKADEAK-KKAEEAKKAD--EAKKKAEEAKKKA--DAAKKKAE---------EAKKAAEAAKAEAE 1353

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    357 LKDDYIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNRVKELELELESVKAQSLAiTKQNHMLNEKVKEMSD 436
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKK 1432

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 4503179    437 YSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQPAPELAVFQKELRKAEKA 492
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 297-554 1.23e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.28  E-value: 1.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     297 RGREAELK--------QRVE--AFELNQKLqeekhksitEALRRQEQNIKSFeetydRKLKNELLKYQLELkddYIIRTN 366
Cdd:TIGR02168  173 RRKETERKlertrenlDRLEdiLNELERQL---------KSLERQAEKAERY-----KELKAELRELELAL---LVLRLE 235

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     367 RLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNrvkELELELESVKAQSLAITKQNHMLNEKVKEMSD----YSLLKE 442
Cdd:TIGR02168  236 ELREELEELQEELKEAEEELEELTAELQELEEKLE---ELRLEVSELEEEIEELQKELYALANEISRLEQqkqiLRERLA 312

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     443 EKLELLAQNKLLKQQLEESRNENLRLLNRLAQPAPELAVFQKELRKAEKAIVVEHEEFESCRQALHKQLQDEIEHSAQLK 522
Cdd:TIGR02168  313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392

                          250       260       270
                   ....*....|....*....|....*....|..
gi 4503179     523 AQILGYKASVKSLTTQVADLKLQLKQTQTALE 554
Cdd:TIGR02168  393 LQIASLNNEIERLEARLERLEDRRERLQQEIE 424
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
194-555 1.41e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 49.29  E-value: 1.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    194 ESLEIKLNEYKREIEEqlRAEMCQKLKffkdtEIAKIKMEAKKKYEkELTMFQNDFEKACQAKSEALVLREKSTLERIHK 273
Cdd:PRK03918  317 SRLEEEINGIEERIKE--LEEKEERLE-----ELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    274 HQEiETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELN---------------QKLQEEKHKSI----TEALRRQEQN 334
Cdd:PRK03918  389 LEK-ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAieelkkakgkcpvcgRELTEEHRKELleeyTAELKRIEKE 467

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    335 IKSFEETyDRKLKNELLKYQLELKDDYIIRTNRLIEDE----------------RKNKEKAVHLQEELIAINSKKEELNQ 398
Cdd:PRK03918  468 LKEIEEK-ERKLRKELRELEKVLKKESELIKLKELAEQlkeleeklkkynleelEKKAEEYEKLKEKLIKLKGEIKSLKK 546

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    399 SVNRVKELELELEsvkaqslAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLlkQQLEESRNENLRLLN---RLAQP 475
Cdd:PRK03918  547 ELEKLEELKKKLA-------ELEKKLDELEEELAELLKELEELGFESVEELEERL--KELEPFYNEYLELKDaekELERE 617

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    476 APELAVFQKELRKAEKAIVVEHEEFESCRQALH--KQLQDEIEHsAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTAL 553
Cdd:PRK03918  618 EKELKKLEEELDKAFEELAETEKRLEELRKELEelEKKYSEEEY-EELREEYLELSRELAGLRAELEELEKRREEIKKTL 696


                  ..
gi 4503179    554 EN 555
Cdd:PRK03918  697 EK 698
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 263-554 2.39e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 48.53  E-value: 2.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     263 REKSTLERIH----KHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFelnQKLQEEKHKSITEALRRQEQ---NI 335
Cdd:TIGR02169  205 REREKAERYQallkEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKL---TEEISELEKRLEEIEQLLEElnkKI 281

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     336 KSFEETYDRKLKNELLKYQLElkddyIIRTNRLIEDERKNKEKAVHLQEELIA-INSKKEELNQSVNRVKELELELESVK 414
Cdd:TIGR02169  282 KDLGEEEQLRVKEKIGELEAE-----IASLERSIAEKERELEDAEERLAKLEAeIDKLLAEIEELEREIEEERKRRDKLT 356

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     415 AqslAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQPAPELAVFQKELRKAEKAIV 494
Cdd:TIGR02169  357 E---EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     495 VEHEEFESCRQALHKQLQDEIEHSAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTALE 554
Cdd:TIGR02169  434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 198-434 3.06e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 48.20  E-value: 3.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     198 IKLNEYKREIEEQLRAEMCQKLKffKDTEIAKIKMEAKKKYEK-----ELTMFQNDFEKACQAKsealVLREKSTLERIH 272
Cdd:pfam17380  353 IRQEERKRELERIRQEEIAMEIS--RMRELERLQMERQQKNERvrqelEAARKVKILEEERQRK----IQQQKVEMEQIR 426

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     273 KHQEiETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQklQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLK 352
Cdd:pfam17380  427 AEQE-EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ--QEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     353 yqlelkddyiiRTNRLIEDERKNKEKAVHLQEELIAINSKKEELNQSVNRVKELEL-ELESVKAQSLAITKQNHMLN--E 429
Cdd:pfam17380  504 -----------RKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMeERRRIQEQMRKATEERSRLEamE 572


                   ....*
gi 4503179     430 KVKEM 434
Cdd:pfam17380  573 REREM 577
PTZ00121 PTZ00121
MAEBL; Provisional
 197-521 5.94e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.44  E-value: 5.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    197 EIKLNEYKREIEEQLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAKSE-ALVLREKSTLERIHKHQ 275
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDkNMALRKAEEAKKAEEAR 1593

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    276 EIETKEIYAQRqlllKDMDLLRGREAElKQRVEAFELnqKLQEEKHKSITEALRRQEQNIKSFEETYDRKLKNELLKYQL 355
Cdd:PTZ00121 1594 IEEVMKLYEEE----KKMKAEEAKKAE-EAKIKAEEL--KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    356 ELKDDyiiRTNRLIEDERKNKEKAVHLQEELiainSKKEELNQSVNRVKELELElESVKAQSLaiTKQNHMLNEKVKEMS 435
Cdd:PTZ00121 1667 AKKAE---EDKKKAEEAKKAEEDEKKAAEAL----KKEAEEAKKAEELKKKEAE-EKKKAEEL--KKAEEENKIKAEEAK 1736

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    436 DYSLLKeeklellaqnkllKQQLEESRNENLRlLNRLAQPAPELAVFQKELRKAEKAIVVE--HEEFESCRQALHKQLQD 513
Cdd:PTZ00121 1737 KEAEED-------------KKKAEEAKKDEEE-KKKIAHLKKEEEKKAEEIRKEKEAVIEEelDEEDEKRRMEVDKKIKD 1802


                  ....*...
gi 4503179    514 EIEHSAQL 521
Cdd:PTZ00121 1803 IFDNFANI 1810
PRK12704 PRK12704
phosphodiesterase; Provisional
 318-494 1.19e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 45.92  E-value: 1.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    318 EEKHKSITEALRRQEQNIKSFEETydrKLKNELLKYQLELKDDYIIRTNRLIEDERKNKEKAVHLQEELIAINSKKEELN 397
Cdd:PRK12704   37 EEEAKRILEEAKKEAEAIKKEALL---EAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELE 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    398 QSVNRVKELELELESVKAqslaitKQNHMLNEKVKEMSDYSllkeEKLELLAQNKLLKQQLEESRNENLRLLNRLAQPAP 477
Cdd:PRK12704  114 KKEKELEQKQQELEKKEE------ELEELIEEQLQELERIS----GLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK 183

                         170
                  ....*....|....*..
gi 4503179    478 ELAVfqkelRKAEKAIV 494
Cdd:PRK12704  184 EEAD-----KKAKEILA 195
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 276-509 4.80e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 4.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     276 EIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEKHKSITEALRRQEQNIKSFEEtYDRKLKNELLKYQL 355
Cdd:TIGR02168  697 EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA-EIEELEERLEEAEE 775

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     356 ELKDdyiirtnrlIEDER-KNKEKAVHLQEELIAINSKKEELNQSVNRVKE----LELELESVKAQSLAITKQNHMLNEK 430
Cdd:TIGR02168  776 ELAE---------AEAEIeELEAQIEQLKEELKALREALDELRAELTLLNEeaanLRERLESLERRIAATERRLEDLEEQ 846

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     431 VKEMS-DYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQPAPELAVFQKELRKAEKAIVVEHEEFESCRQALHK 509
Cdd:TIGR02168  847 IEELSeDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
PTZ00121 PTZ00121
MAEBL; Provisional
 192-556 1.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    192 KFESLEIKLNEYKREIEE-QLRAEMCQKLKFFKDTEIAKIKMEAKKKYEKEltmfQNDFEKACQAKSEALVLREKStlER 270
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAaKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA----EAAEKKKEEAKKKADAAKKKA--EE 1389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    271 IHKHQEIETK-EIYAQRQLLLKDMDLLRGREAELKQRVE----AFELNQKLQEEKH----KSITEALRRQEQNIKSFEET 341
Cdd:PTZ00121 1390 KKKADEAKKKaEEDKKKADELKKAAAAKKKADEAKKKAEekkkADEAKKKAEEAKKadeaKKKAEEAKKAEEAKKKAEEA 1469

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    342 Y---DRKLKNELLKYQLELKDDyiIRTNRLIEDERKNKEKAVHLQEELIAINSKK--EELNQSVNRVKELELELESVKAQ 416
Cdd:PTZ00121 1470 KkadEAKKKAEEAKKADEAKKK--AEEAKKKADEAKKAAEAKKKADEAKKAEEAKkaDEAKKAEEAKKADEAKKAEEKKK 1547

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    417 SLAITKQNHMLNEKVKEMSDYSLLKEEKLELLAQNKLLKQQLEESRNENLRLLNRLAQP--APELAVFQKELRKAEKaiV 494
Cdd:PTZ00121 1548 ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmkAEEAKKAEEAKIKAEE--L 1625

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 4503179    495 VEHEEFESCRQALHKQLQDEIEHSAQLKAQILGYKASVKSLTTQVADLKLQLKQTQTALENE 556
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
 232-548 2.42e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 41.88  E-value: 2.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     232 MEAKKKYEKELTMFQNDFEKACQakseaLVLREKSTLERIHKHQEIETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFE 311
Cdd:TIGR00618  158 LKAKSKEKKELLMNLFPLDQYTQ-----LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR 232

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     312 LNQKLQEEKHKSITEALRRQEQNIKSFEETydRKLKNELLKYQLELKDdyIIRTNRLIEDERKnKEKAVHLQEELIAINS 391
Cdd:TIGR00618  233 EALQQTQQSHAYLTQKREAQEEQLKKQQLL--KQLRARIEELRAQEAV--LEETQERINRARK-AAPLAAHIKAVTQIEQ 307

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     392 KKEELNQSVN-RVKELELEL---ESVKAQSLAITKQNHMLNE----------------KVKEMSDYSLLKEEKLELLAQN 451
Cdd:TIGR00618  308 QAQRIHTELQsKMRSRAKLLmkrAAHVKQQSSIEEQRRLLQTlhsqeihirdahevatSIREISCQQHTLTQHIHTLQQQ 387

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179     452 K-LLKQQLEESRNENLRLLNRLAQPAPELAVF---QKELRKAEKAIVVEHEEFESCRQALHKQLQDEIEHSAQLKAQILG 527
Cdd:TIGR00618  388 KtTLTQKLQSLCKELDILQREQATIDTRTSAFrdlQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467

                          330       340
                   ....*....|....*....|.
gi 4503179     528 YKAsvksLTTQVADLKLQLKQ 548
Cdd:TIGR00618  468 LKE----REQQLQTKEQIHLQ 484
PLN03229 PLN03229
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
 172-400 4.49e-03

acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional


Pssm-ID: 178768 [Multi-domain]  Cd Length: 762  Bit Score: 40.99  E-value: 4.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    172 LAEKLQLIDDQFADAYPQRIKFESLEIKLNEYK-----------REIEEQLRAEMCQKLKFFKDTEIAKIKMEA-KKKYE 239
Cdd:PLN03229  509 LMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNefsrakalsekKSKAEKLKAEINKKFKEVMDRPEIKEKMEAlKAEVA 588

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    240 KELTMFQNDFEKAcqaksealvLREKstLERIHKHQEIETKEIyaqrqllLKDMDL----LRGREAELKQRVEAFELNQK 315
Cdd:PLN03229  589 SSGASSGDELDDD---------LKEK--VEKMKKEIELELAGV-------LKSMGLevigVTKKNKDTAEQTPPPNLQEK 650

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    316 ---LQEEKHKSITEALRRQEQNIKSFE---------ETYDRKLKN--ELLKYQLELKDDYIIRTNRLiederknKEKAVH 381
Cdd:PLN03229  651 iesLNEEINKKIERVIRSSDLKSKIELlklevakasKTPDVTEKEkiEALEQQIKQKIAEALNSSEL-------KEKFEE 723

                         250
                  ....*....|....*....
gi 4503179    382 LQEELIAINSKKEELNQSV 400
Cdd:PLN03229  724 LEAELAAARETAAESNGSL 742
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
168-556 5.35e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.52  E-value: 5.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   168 NRDSLAEKLQLIDdQFADAYPQRIKFESLEIKLNEYKREIEEQLraemcQKLKFFKDTEiakikmEAKKKYEKELTMFQN 247
Cdd:COG4717  110 ELEELREELEKLE-KLLQLLPLYQELEALEAELAELPERLEELE-----ERLEELRELE------EELEELEAELAELQE 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   248 DFEKACQAKSEALVLREKSTLERIHKHQEiETKEIYAQRQLLLKDMDLLRGREAELKQRVEAFELNQKLQEEK------- 320
Cdd:COG4717  178 ELEELLEQLSLATEEELQDLAEELEELQQ-RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARlllliaa 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   321 ------------------------------HKSITEALRRQEQNIKSFEETYDRKLKNELLKYQL-ELKDDYIIRTNRLI 369
Cdd:COG4717  257 allallglggsllsliltiagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELeELLAALGLPPDLSP 336

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   370 EDERKNKEKAVHLQEELIAINSKKEELNQSVNRvKELELELESVKAQSLAitkqnhMLNEKVKEMSDYsllkeekLELLA 449
Cdd:COG4717  337 EELLELLDRIEELQELLREAEELEEELQLEELE-QEIAALLAEAGVEDEE------ELRAALEQAEEY-------QELKE 402

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179   450 QNKLLKQQLEESRNENLRLLNRL--AQPAPELAVFQKELRKAEKAIVVEHEEFESCRQALhKQLQDEIEHSaQLKAQILG 527
Cdd:COG4717  403 ELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEEELEELREELAELEAEL-EQLEEDGELA-ELLQELEE 480

                        410       420       430
                 ....*....|....*....|....*....|..
gi 4503179   528 YKASVKSLTTQVADLKLQ---LKQTQTALENE 556
Cdd:COG4717  481 LKAELRELAEEWAALKLAlelLEEAREEYREE 512
PRK12704 PRK12704
phosphodiesterase; Provisional
 226-388 7.97e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 40.15  E-value: 7.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    226 EIAKIKMEAKKKyEKELtmfqndfekacQAKSEALVLR---EKSTLERIHKHQEIETKEIyaQRQLLLKD-MDLLRGREA 301
Cdd:PRK12704   45 EEAKKEAEAIKK-EALL-----------EAKEEIHKLRnefEKELRERRNELQKLEKRLL--QKEENLDRkLELLEKREE 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    302 ELKQRVEAFELNQKLQEEKHKSITEALRRQEQ---NIKSF--EETydrklKNELLKyqlELKDDYIIRTNRLI-EDERKN 375
Cdd:PRK12704  111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQeleRISGLtaEEA-----KEILLE---KVEEEARHEAAVLIkEIEEEA 182

                         170
                  ....*....|...
gi 4503179    376 KEKAVHLQEELIA 388
Cdd:PRK12704  183 KEEADKKAKEILA 195
PTZ00121 PTZ00121
MAEBL; Provisional
 144-436 8.67e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.12  E-value: 8.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    144 LKELAEYHQAKESCNMETQTSSTFNRDSLAEKLQLIDDQFADAYPQRIKFESLEIKLNEYKREIEEQLRAEMCQK---LK 220
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKaeeEN 1659

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    221 FFKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAKSEAlvlREKSTLERIHKHQEIETKEiyaqrqlllkdMDLLRGRE 300
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA---EEAKKAEELKKKEAEEKKK-----------AEELKKAE 1725

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4503179    301 AELKQRVEafELNQKLQEEKHKSitEALRRQE------QNIKSFEETYD---RKLKNELLKYQLELKDD-YIIRTNRLIE 370
Cdd:PTZ00121 1726 EENKIKAE--EAKKEAEEDKKKA--EEAKKDEeekkkiAHLKKEEEKKAeeiRKEKEAVIEEELDEEDEkRRMEVDKKIK 1801

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4503179    371 DERKNKEKAVH-LQEELIAINSKKEelnQSVNRVKELELELESVKAQSLAITKQNHMLNEKVKEMSD 436
Cdd:PTZ00121 1802 DIFDNFANIIEgGKEGNLVINDSKE---MEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGN 1865
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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