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Conserved domains on  [gi|4758974|ref|NP_004149|]
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persephin preproprotein [Homo sapiens]

Protein Classification

TGF-beta family protein( domain architecture ID 14443714)

transforming growth factor-beta (TGF-beta) family protein may control proliferation, differentiation, and other functions in many cell types

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TGF_beta_Persephin cd19382
transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; ...
 64-156 1.28e-48

transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; Persephin is a member of the glial cell-line-derived neurotrophic factor (GDNF) family with neurotrophic activity on mesencephalic dopaminergic and motor neurons.


:

Pssm-ID: 381652  Cd Length: 99  Bit Score: 151.85  E-value: 1.28e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   64 GPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRgARTQHGLALARLQGQGRA-------HGGPCCRPTRYTDVAFLD 136
Cdd:cd19382   1 RPCRLRSLLLRVGDLGLGYDSEETVLFKYCSGGCPR-ARTNHDLTLSRLLQKGDLpslgekiFGGPCCRPTHYEDVAFLD 79

                        90       100
                ....*....|....*....|
gi 4758974  137 DRHRWQRLPQLSAAACGCGG 156
Cdd:cd19382  80 DNHRWHTVEKLSAAACACVG 99
 
Name Accession Description Interval E-value
TGF_beta_Persephin cd19382
transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; ...
 64-156 1.28e-48

transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; Persephin is a member of the glial cell-line-derived neurotrophic factor (GDNF) family with neurotrophic activity on mesencephalic dopaminergic and motor neurons.


Pssm-ID: 381652  Cd Length: 99  Bit Score: 151.85  E-value: 1.28e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   64 GPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRgARTQHGLALARLQGQGRA-------HGGPCCRPTRYTDVAFLD 136
Cdd:cd19382   1 RPCRLRSLLLRVGDLGLGYDSEETVLFKYCSGGCPR-ARTNHDLTLSRLLQKGDLpslgekiFGGPCCRPTHYEDVAFLD 79

                        90       100
                ....*....|....*....|
gi 4758974  137 DRHRWQRLPQLSAAACGCGG 156
Cdd:cd19382  80 DNHRWHTVEKLSAAACACVG 99
TGF_beta pfam00019
Transforming growth factor beta like domain;
65-154 4.49e-16

Transforming growth factor beta like domain;


Pssm-ID: 459632  Cd Length: 102  Bit Score: 69.28  E-value: 4.49e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974     65 PCQLWSLTLSVAELGLG--YASEEKVIFRYCAGSCPRG-----ARTQHGLALARLQGQG-RAHGGPCCRPTRYTDVAFL- 135
Cdd:pfam00019   1 ECRRHSLYVDFEDLGWDdwIIAPKGYNAYYCSGSCPSHlnpqlSATNHAILQSLLHSLKpANVPKPCCVPTKLSPLSVLy 80

                          90       100
                  ....*....|....*....|..
gi 4758974    136 ---DDRHRWQRLPQLSAAACGC 154
Cdd:pfam00019  81 yddEGNVVLKTYPDMVVESCGC 102
TGFB smart00204
Transforming growth factor-beta (TGF-beta) family; Family members are active as ...
 66-155 1.92e-03

Transforming growth factor-beta (TGF-beta) family; Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.


Pssm-ID: 214556  Cd Length: 102  Bit Score: 35.71  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974      66 CQLWSLTLSVAELG--------LGYAseekviFRYCAGSCP-----RGARTQHG--LALARLQGQGRAhGGPCCRPTRYT 130
Cdd:smart00204   1 CRRRQLYVDFKDLGwddwiiapKGYN------AYYCEGECPfplstSLNATNHAivQTLVHLLGPNPV-PKPCCVPTKLS 73

                           90       100
                   ....*....|....*....|....*....
gi 4758974     131 DVAFL----DDRHRWQRLPQLSAAACGCG 155
Cdd:smart00204  74 PLSMLyyddDGNVVLRNYPNMVVEECGCR 102
 
Name Accession Description Interval E-value
TGF_beta_Persephin cd19382
transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; ...
 64-156 1.28e-48

transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; Persephin is a member of the glial cell-line-derived neurotrophic factor (GDNF) family with neurotrophic activity on mesencephalic dopaminergic and motor neurons.


Pssm-ID: 381652  Cd Length: 99  Bit Score: 151.85  E-value: 1.28e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   64 GPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRgARTQHGLALARLQGQGRA-------HGGPCCRPTRYTDVAFLD 136
Cdd:cd19382   1 RPCRLRSLLLRVGDLGLGYDSEETVLFKYCSGGCPR-ARTNHDLTLSRLLQKGDLpslgekiFGGPCCRPTHYEDVAFLD 79

                        90       100
                ....*....|....*....|
gi 4758974  137 DRHRWQRLPQLSAAACGCGG 156
Cdd:cd19382  80 DNHRWHTVEKLSAAACACVG 99
TGF_beta_GDNF_like cd13750
transforming growth factor beta (TGF-beta) like domain found in the glial cell-line-derived ...
 65-154 1.86e-41

transforming growth factor beta (TGF-beta) like domain found in the glial cell-line-derived neurotrophic factor (GDNF) family of ligands; GDNF family of ligands includes GDNF, Artemin, Neurturin, and Persephin. They plays an important role in the development and maintenance of the central and peripheral nervous system, renal morphogenesis, and spermatogenesis.


Pssm-ID: 381628  Cd Length: 95  Bit Score: 133.73  E-value: 1.86e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   65 PCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRgARTQHGLALARLQGQGRAH-----GGPCCRPTRYTD-VAFLDDR 138
Cdd:cd13750   1 GCVLRELHLRVTDLGLGYASEEEVIFRYCAGSCEA-ARTNYDLILANLRGWRRLRsdrkvGQPCCRPTAYDDdVSFLDDN 79

                        90
                ....*....|....*.
gi 4758974  139 HRWQRLPQLSAAACGC 154
Cdd:cd13750  80 SRYHILRKLSAKACGC 95
TGF_beta_Artemin cd19381
transforming growth factor beta (TGF-beta) like domain found in Artemin and similar proteins; ...
 65-154 4.38e-33

transforming growth factor beta (TGF-beta) like domain found in Artemin and similar proteins; Artemin, also termed Enovin, or Neublastin, is a member of the glial cell-line-derived neurotrophic factor (GDNF) family with growth promoting activity on neuronal cells. It acts as the ligand for the GFR-alpha-3-RET receptor complex but can also activate the GFR-alpha-1-RET receptor complex. It supports peripheral and central neurons and signals through the GFR-alpha-3-RET receptor complex.


Pssm-ID: 381651  Cd Length: 98  Bit Score: 112.45  E-value: 4.38e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   65 PCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRgARTQHGLALARLQGQG----RAHGG----PCCRPTRYTDVAFLD 136
Cdd:cd19381   1 GCRLRSLRVKVRDLGLGYESDEIVLFKYCSGSCQR-ARTNYDLTLNSLLKQGaippGPHERvssqPCCRPTRYENVSFMD 79

                        90
                ....*....|....*...
gi 4758974  137 DRHRWQRLPQLSAAACGC 154
Cdd:cd19381  80 VQNVWQTVEKLSAAECSC 97
TGF_beta_Neurturin cd19383
transforming growth factor beta (TGF-beta) like domain found in Neurturin and similar proteins; ...
 60-155 4.55e-27

transforming growth factor beta (TGF-beta) like domain found in Neurturin and similar proteins; Neurturin is a member of the glial cell-line-derived neurotrophic factor (GDNF) family. It acts as a neurotrophic factor that supports the survival of sympathetic neurons in culture and may regulate the development and maintenance of the CNS. It might control the size of non-neuronal cell population such as haemopoietic cells.


Pssm-ID: 381653  Cd Length: 104  Bit Score: 97.46  E-value: 4.55e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   60 RALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCpRGARTQHGLALARLQGQGR--------AHGGPCCRPTRY-T 130
Cdd:cd19383   1 RRRSKPCSLRELEVTVSELGLGYESDETVLFRYCSGKC-EAARRNYDLTLKHMRGKKSlkkgrkdkVRARPCCRPTAYeD 79

                        90       100
                ....*....|....*....|....*
gi 4758974  131 DVAFLDDRHRWQRLPQLSAAACGCG 155
Cdd:cd19383  80 DVSFLDNNNRYHTIQELSAKECGCV 104
TGF_beta_GDNF cd19380
transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived ...
 66-154 4.67e-18

transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived neurotrophic factor (GDNF) and similar proteins; GDNF, also termed astrocyte-derived trophic factor (ATF), is a member of the glial cell-line-derived neurotrophic factor (GDNF) family. It acts as a neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high-affinity dopamine uptake.


Pssm-ID: 381650  Cd Length: 96  Bit Score: 74.11  E-value: 4.67e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   66 CQLWSLTLSVAELGLGYASEEKVIFRYCAGSCpRGARTQHGLALARLQGQGR----AHGGPCCRPTRYTD-VAFLDDRHR 140
Cdd:cd19380   4 CVLTEIHLNVTDLGLGYETKEELIFRYCSGSC-DAAETTYDKILKNLTRNKKlvsdKVGQACCRPIAFDDdLSFLDDNLV 82

                        90
                ....*....|....
gi 4758974  141 WQRLPQLSAAACGC 154
Cdd:cd19380  83 YHTLKKHSAKKCGC 96
TGF_beta pfam00019
Transforming growth factor beta like domain;
65-154 4.49e-16

Transforming growth factor beta like domain;


Pssm-ID: 459632  Cd Length: 102  Bit Score: 69.28  E-value: 4.49e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974     65 PCQLWSLTLSVAELGLG--YASEEKVIFRYCAGSCPRG-----ARTQHGLALARLQGQG-RAHGGPCCRPTRYTDVAFL- 135
Cdd:pfam00019   1 ECRRHSLYVDFEDLGWDdwIIAPKGYNAYYCSGSCPSHlnpqlSATNHAILQSLLHSLKpANVPKPCCVPTKLSPLSVLy 80

                          90       100
                  ....*....|....*....|..
gi 4758974    136 ---DDRHRWQRLPQLSAAACGC 154
Cdd:pfam00019  81 yddEGNVVLKTYPDMVVESCGC 102
TGF_beta_BMPs_GDFs cd13756
transforming growth factor beta (TGF-beta) like domain found in the BMP/GDF family; The BMP ...
 66-154 3.94e-10

transforming growth factor beta (TGF-beta) like domain found in the BMP/GDF family; The BMP/GDF family consists of bone morphogenetic proteins (BMPs), growth and differentiation factors (GDFs) and similar proteins. BMPs are a group of growth factors also known as cytokines and as metabologens. They induce the formation of bone and cartilage and functions as pivotal morphogenetic signals, orchestrating tissue architecture throughout the body. GDFs have functions predominantly in development.


Pssm-ID: 381634  Cd Length: 102  Bit Score: 53.86  E-value: 3.94e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   66 CQLWSLTLSVAELGLGyaseEKVIF------RYCAGSCPRG-----ARTQHGL--ALARLQGQGRAHGGPCCRPTRYTDV 132
Cdd:cd13756   1 CRRRPLYVDFSDLGWD----DWIIApkgynaNYCAGSCPFPlsshaNATNHAIlqALLHSLNPKKSVPKPCCVPTKYSPL 76

                        90       100
                ....*....|....*....|....*.
gi 4758974  133 AFL----DDRHRWQRLPQLSAAACGC 154
Cdd:cd13756  77 SVLyydeDGNVVLKTYPDMVVEECGC 102
TGF_beta_SF cd08698
transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily; TGF-beta ...
 66-154 7.56e-08

transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily; TGF-beta superfamily consists of a large group of cell regulatory proteins, such as TFG-betas, Nodal, Activins/Inhibins, glial cell-line-derived neurotrophic factor (GDNF) family of ligands, bone morphogenetic proteins (BMPs), and growth and differentiation factors (GDFs). They play important roles in developmental and physiological processes in a variety of species, including invertebrates as well as vertebrates, through specific receptor complexes that are composed of type I and type II serine/threonine receptor kinases. The receptor kinases subsequently activate Smad proteins, which then propagate the signals into the nucleus to regulate target gene expression. Proteins from the TGF-beta superfamily are only active as homo- or heterodimer.


Pssm-ID: 381627  Cd Length: 100  Bit Score: 47.86  E-value: 7.56e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   66 CQLWSLTLSVAELGLGY--ASEEKVIFRYCAGSCPRGA-----RTQHGLALARLQGQGRAHGGPCCRPTRYTDVAFLDDR 138
Cdd:cd08698   1 CCKQPLYVNFKDLGGLNwiIAPSGFTANYCRGSCNSESsattnHTKLLQWSRTRRHTPREELKPCCVPTSYEPLSILYYD 80

                        90       100
                ....*....|....*....|
gi 4758974  139 HRWQR----LPQLSAAACGC 154
Cdd:cd08698  81 NNGTVvetlLPNLIVTECGC 100
TGF_beta_TGFbeta1_2_3 cd13753
transforming growth factor beta (TGF-beta) like domain found in transforming growth factor ...
 66-154 7.38e-07

transforming growth factor beta (TGF-beta) like domain found in transforming growth factor beta-1 (TGF-beta-1), beta-2 (TGF-beta-2), beta-3 (TGF-beta-3) and similar proteins; The family includes TGF-beta-1, TGF-beta-2 and TGF-beta-3, which are polypeptide members of the transforming growth factor beta superfamily of cytokines. TGF-beta-1 is a secreted protein that performs many cellular functions, including the control of cell growth, cell proliferation, cell differentiation, and apoptosis. TGF-beta-2 is a secreted protein that performs many cellular functions and has a vital role during embryonic development. It can suppress the effects of interleukin-2 dependent T-cell growth. TGF-beta-3 is involved in embryogenesis and cell differentiation. It regulates molecules involved in cellular adhesion and extracellular matrix (ECM) formation during the process of palate development.


Pssm-ID: 381631  Cd Length: 97  Bit Score: 44.99  E-value: 7.38e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   66 CQLWSLTLSVA-ELGLGYASEEKVI-FRYCAGSCP--RGARTQHGLALARLQGQG-RAHGGPCCRPTRYT--DVAFLDDR 138
Cdd:cd13753   1 CCLRPLYINFRrDLGWKWIHEPKGFnANYCAGACPylWSADTQHSTVLQLYNRLNpVASAAPCCSPRELEplTILYYDGR 80

                        90
                ....*....|....*..
gi 4758974  139 H-RWQRLPQLSAAACGC 154
Cdd:cd13753  81 NpKIETLSNMIVTSCKC 97
TGF_beta_INHB cd13752
transforming growth factor beta (TGF-beta) like domain found in inhibin beta A chain (INHBA), ...
 92-154 3.24e-06

transforming growth factor beta (TGF-beta) like domain found in inhibin beta A chain (INHBA), B chain (INHBB), C chain (INHBC), E chain (INHBE) and similar proteins; The family includes inhibin beta A chain (INHBA), B chain (INHBB), C chain (INHBC), and E chain (INHBE). INHBA, also termed activin beta-A chain, or erythroid differentiation protein (EDF), is a component of inhibin A, activin A, or activin AB. Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. INHBB, also termed activin beta-B chain, is a component of inhibin B, activin A, or activin AB. Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. INHBC, also termed activin beta-C chain, might play important roles in carcinogenesis. It may function as a negative regulator of liver growth. INHBE, also termed activin beta-E chain, is a possible insulin resistance-associated hepatokine with hepatic gene expression that positively correlated with insulin resistance and body mass index in humans. It also acts as a possible new marker for drug-induced endoplasmic reticulum stress.


Pssm-ID: 381630  Cd Length: 100  Bit Score: 43.41  E-value: 3.24e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 4758974   92 YCAGSCP---RGARTQHG--LALARLQGQGRAHGGPCCRPTRYTDVAFL----DDRHRWQRLPQLSAAACGC 154
Cdd:cd13752  29 YCKGSCSgssSPFRSHHTtiLQKYLSKNKAKSELTPCCTPTKMSPLSLLyydsDGNIVKKDLPNMIVESCGC 100
TGF_beta_AMH cd13757
transforming growth factor beta (TGF-beta) like domain found in anti-Muellerian hormone (AMH) ...
 65-154 6.26e-05

transforming growth factor beta (TGF-beta) like domain found in anti-Muellerian hormone (AMH) and similar proteins; AMH, also termed Muellerian-inhibiting factor, or Muellerian-inhibiting substance (MIS), is a glycoprotein that causes regression of the Muellerian duct. It can also inhibit the growth of tumors derived from tissues of Muellerian duct origin.


Pssm-ID: 381635  Cd Length: 99  Bit Score: 39.66  E-value: 6.26e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   65 PCQLWSLTLSVAELGLGYASEEKVIFRyCAGSC-----PRGARTQHGLALARLQGQGRAHG-GPCCRPTRYTD---VAFL 135
Cdd:cd13757   1 YCRLRELSVSLRSEKFILSPKRYNINN-CQGPCrfplsDRPRYNNHAVLLLKMQERGLPLQrAPCCVPVAYEEllvVELS 79

                        90
                ....*....|....*....
gi 4758974  136 DDRHRWQRLPQLSAAACGC 154
Cdd:cd13757  80 DEGTEISLKPNMVATECGC 98
TGF_beta_DAF7 cd19378
transforming growth factor beta (TGF-beta) like domain found in Caenorhabditis elegans Dauer ...
 66-154 3.97e-04

transforming growth factor beta (TGF-beta) like domain found in Caenorhabditis elegans Dauer larva development regulatory growth factor DAF-7 and similar proteins; DAF-7, also termed abnormal dauer formation protein 7, may act as a negative regulator of dauer larva development by transducing chemosensory information from ASI neurons. It is involved in sensitivity to CO2 levels.


Pssm-ID: 381648  Cd Length: 100  Bit Score: 37.70  E-value: 3.97e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974   66 CQLWSLTLSVAELGLGYaseekVIF------RYCAGSCPrgARTQHGLALARLQGQGRAHG------GPCCRPTRYTDVA 133
Cdd:cd19378   3 CCLYDLTIDFEEIGWNF-----IIApkkynaNMCRGDCK--SNHHHRPNSASILLNPITRSeskqehGSCCHPTEYDPIT 75

                        90       100
                ....*....|....*....|....*
gi 4758974  134 FL--DDRHRWQ--RLPQLSAAACGC 154
Cdd:cd19378  76 VVyfNEDGQLKikTINGMIAKKCSC 100
TGF_beta_GDF8_like cd13751
transforming growth factor beta (TGF-beta) like domain found in growth/differentiation factors, ...
 92-154 1.37e-03

transforming growth factor beta (TGF-beta) like domain found in growth/differentiation factors, GDF8 and GDF11, and similar proteins; The family includes GDF8 and GDF11. GDF8, also termed myostatin, acts specifically as a negative regulator of skeletal muscle growth. GDF11, also termed bone morphogenetic protein 11 (BMP-11), is a secreted signal that acts globally to specify positional identity along the anterior/posterior axis during development.


Pssm-ID: 381629  Cd Length: 96  Bit Score: 36.09  E-value: 1.37e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4758974   92 YCAGSCPRGARTQHGLALARLQGQGRAHGGPCCRPTRYTDVAFL--DDRH--RWQRLPQLSAAACGC 154
Cdd:cd13751  30 YCSGECPFVYLQSYPHTHLVQQANPRGSAGPCCTPTKMSPLSMLyfDEDGniIYGTLPDMVVERCGC 96
TGFB smart00204
Transforming growth factor-beta (TGF-beta) family; Family members are active as ...
 66-155 1.92e-03

Transforming growth factor-beta (TGF-beta) family; Family members are active as disulphide-linked homo- or heterodimers. TGFB is a multifunctional peptide that controls proliferation, differentiation, and other functions in many cell types.


Pssm-ID: 214556  Cd Length: 102  Bit Score: 35.71  E-value: 1.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4758974      66 CQLWSLTLSVAELG--------LGYAseekviFRYCAGSCP-----RGARTQHG--LALARLQGQGRAhGGPCCRPTRYT 130
Cdd:smart00204   1 CRRRQLYVDFKDLGwddwiiapKGYN------AYYCEGECPfplstSLNATNHAivQTLVHLLGPNPV-PKPCCVPTKLS 73

                           90       100
                   ....*....|....*....|....*....
gi 4758974     131 DVAFL----DDRHRWQRLPQLSAAACGCG 155
Cdd:smart00204  74 PLSMLyyddDGNVVLRNYPNMVVEECGCR 102
TGF_beta_GDF11 cd19389
transforming growth factor beta (TGF-beta) like domain found in growth/differentiation factor ...
 92-154 7.36e-03

transforming growth factor beta (TGF-beta) like domain found in growth/differentiation factor 11 (GDF11) and similar proteins; GDF11, also termed bone morphogenetic protein 11 (BMP-11), is a secreted signal that acts globally to specify positional identity along the anterior/posterior axis during development.


Pssm-ID: 381659  Cd Length: 109  Bit Score: 34.24  E-value: 7.36e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4758974   92 YCAGSCPRGARTQHGLALARLQGQGRAHGGPCCRPTRYT--DVAFLDDRHR--WQRLPQLSAAACGC 154
Cdd:cd19389  42 YCSGQCEYMFMQKYPHTHLVQQANPRGSAGPCCTPTKMSpiNMLYFNDKQQiiYGKIPGMVVDRCGC 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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