|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
381-908 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 760.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 381 QVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGP-- 458
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 459 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 538
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 539 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 618
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 619 LQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEG 698
Cdd:pfam15070 241 LQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 699 DGLDREEEEDEeeeeeeavaVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKE 778
Cdd:pfam15070 321 DGLESEEEEEE---------APRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 779 PEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLK 858
Cdd:pfam15070 392 PEHEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1955886107 859 ERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQ 908
Cdd:pfam15070 472 QRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
953-998 |
3.00e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 101.69 E-value: 3.00e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1955886107 953 SPRDNPTAQQIMQLLREMQNPRERPGLGSNPCIPFFYRADENDEVK 998
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
189-914 |
1.32e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 1.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 189 QQNQEITDQLEE--------EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQY 260
Cdd:TIGR02168 213 ERYKELKAELRElelallvlRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 261 SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRlelykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK 340
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 341 KLEMTELLLQQfsSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKG-ESAMWRQRMQQMSEQVH 419
Cdd:TIGR02168 366 ELEELESRLEE--LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 420 TLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQVQDNEGLS 494
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarldsLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 495 RLNREQEERLLELERAAELWG--------EQAEARRQILETM-QND--RTTI----SRALSQNRELKEQLAELQSGFVKL 559
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEAALGgrlqavvvENLNAAKKAIAFLkQNElgRVTFlpldSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 560 TNE-----------------NMEITSALQSEQHVKRELGKK--LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQ 620
Cdd:TIGR02168 604 AKDlvkfdpklrkalsyllgGVLVVDDLDNALELAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 621 QYVAAYQQLTSEKEVLHNQLLlqtQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDG 700
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELR---KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 701 LDREEEEDEEEEEEEAVAVpqpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPE 780
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAE------AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 781 AaapapgtggdsvCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 860
Cdd:TIGR02168 835 A------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1955886107 861 HREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQNPADEP 914
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-677 |
4.53e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 4.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 154 ANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALRE----------QLQVHIQTI 223
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEllaelarleqDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 224 GILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKN 303
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 304 TQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQV 382
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALaELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 383 MESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSR-----VQELETSLAELRNQMAEPPPPEPPAG 457
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagaVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 458 PSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQ-------N 530
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLgrtlvaaR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 531 DRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQ 610
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955886107 611 QRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEA 677
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
162-887 |
5.06e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 5.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 162 RYQQLAVALDssyvtNKQLNITIEKLKQQNQEItDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQ 241
Cdd:TIGR02168 214 RYKELKAELR-----ELELALLVLRLEELREEL-EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 242 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ----QKKADRYNKELT----------KERDALRLELYKNTQSN 307
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQleelESKLDELAEELAeleekleelkEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 308 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 387
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 388 QLQMERDKYA------ENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPseV 461
Cdd:TIGR02168 448 ELEELQEELErleealEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGV--L 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 462 EQQLQAEAEhLRKELE-GLAGQLQAQVQDNE------------------GLSRLNREQEERLLELERAAELWGEQAEARR 522
Cdd:TIGR02168 526 SELISVDEG-YEAAIEaALGGRLQAVVVENLnaakkaiaflkqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 523 QILETMQND--------------RTTISRALSQNRELKEQLA-------ELQSGFVKLTNENMEITSALQSEQHVKrELG 581
Cdd:TIGR02168 605 KDLVKFDPKlrkalsyllggvlvVDDLDNALELAKKLRPGYRivtldgdLVRPGGVITGGSAKTNSSILERRREIE-ELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 582 KKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVA 661
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 662 EMARQELQETQERLEAATQQNQQLRAQLslmahpgeGDGLDREEeedeeeeeeeavavpqpmpSIPEDLESREAMVAFFN 741
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQI--------EQLKEELK-------------------ALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 742 SAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPApgtggdsvcgetHRALQGAMEKLQSRFMELMQEKAD 821
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE------------IEELEELIEELESELEALLNERAS 884
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955886107 822 LKERVEELEHRCIQLSGETDTIGEyialyqsQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQE 887
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELES-------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
151-690 |
2.36e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.36e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 151 ASSANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQN---QEITDQLEEEKKECHQKQGALREQLQVHIQTIGILV 227
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLdelAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 228 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRV----GELERALSAVSTQQKKADRYNKELTKER-DALRLELYK 302
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 303 NTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEA-----------PDANQQLQQAMEE 371
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkallknqsglSGILGVLSELISV 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 372 RAQLEA--------HLGQV----------------------------------------------MESVRQLQMERDKYA 397
Cdd:TIGR02168 532 DEGYEAaieaalggRLQAVvvenlnaakkaiaflkqnelgrvtflpldsikgteiqgndreilknIEGFLGVAKDLVKFD 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 398 ENLKG---------------ESAMWRQRMQQMSEQVHTL------------REEKECSMSRvQELETSLAELRNQMAEPP 450
Cdd:TIGR02168 612 PKLRKalsyllggvlvvddlDNALELAKKLRPGYRIVTLdgdlvrpggvitGGSAKTNSSI-LERRREIEELEEKIEELE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 451 PPeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQN 530
Cdd:TIGR02168 691 EK---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 531 DRTTISRALSQNR----ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQ 606
Cdd:TIGR02168 762 EIEELEERLEEAEeelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 607 SLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLR 686
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
....
gi 1955886107 687 AQLS 690
Cdd:TIGR02168 922 EKLA 925
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
431-892 |
3.51e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 3.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 431 RVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ---LQAEAEHLRKELEGLAGQL----QAQVQDNEGLSRLNREQEER 503
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAEleeLEAELEELEAELAELEAELeelrLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 504 LLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKK 583
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 584 LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEM 663
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 664 ARQELQETQERLEAATQQNQQLRAQLS-------------------LMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMP 724
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAelleelaeaaarllllleaEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 725 SIPEDLEsREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETHRALQGA 804
Cdd:COG1196 534 AAYEAAL-EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV--DLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 805 MEKLQSRFMELMQEKADLKERVE-------ELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEE 877
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEaalrravTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490
....*....|....*
gi 1955886107 878 MKVKLLELQELVLRL 892
Cdd:COG1196 691 EELELEEALLAEEEE 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
334-681 |
6.59e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 6.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 334 NLEELQKKLEMTELLLQqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQ 413
Cdd:TIGR02168 678 EIEELEEKIEELEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 414 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPppeppagpsEVEQQLQAEAEHLRKELEGLAGQLQAqvqdnegL 493
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---------AQIEQLKEELKALREALDELRAELTL-------L 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 494 SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNE-------NMEI 566
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNErasleeaLALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 567 TSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHL-QQYVAAYQQLTSEKEVLHNQLLLQTQ 645
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350
....*....|....*....|....*....|....*.
gi 1955886107 646 LVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 681
Cdd:TIGR02168 973 RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
265-697 |
9.29e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 69.03 E-value: 9.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 265 VGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEM 344
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 345 TELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE 424
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 425 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERL 504
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 505 LELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQHVKRELgKKL 584
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG---LPPDLSPEELLELLDRIEELQELL-REA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 585 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYvAAYQQLTSEKEVLHNQLLLQTQLVDQL--QQQEAQGKAVAE 662
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELleALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*
gi 1955886107 663 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGE 697
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
192-830 |
5.98e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 5.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 192 QEITDQLEE-----EKKECHQKQGALREQLQVHIqtigiLVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVG 266
Cdd:COG1196 196 GELERQLEPlerqaEKAERYRELKEELKELEAEL-----LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 267 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 346
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 347 LLLQQfssrceapdANQQLQQAMEERAQLEAhlgQVMESVRQLQMERDKYAENLKGESAMwRQRMQQMSEQVHTLREEKE 426
Cdd:COG1196 351 EELEE---------AEAELAEAEEALLEAEA---ELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 427 CSMSRVQELETSLAELRNQmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLE 506
Cdd:COG1196 418 RLEEELEELEEALAELEEE-EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 507 LERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGE 586
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 587 LQekLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQltsekeVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQ 666
Cdd:COG1196 577 LP--LDKIRARAALAAALARGAIGAAVDLVASDLREADARYY------VLGDTLLGRTLVAARLEAALRRAVTLAGRLRE 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 667 ELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVAS 746
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL----------LAEEEEERELAEAEEERLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 747 AEEEQARLRGQLKEQRVrcRRLAHLLASAQKEPEAAAPAPGTGGD-SVCGETHRALQGAMEKL--------------QSR 811
Cdd:COG1196 719 EELEEEALEEQLEAERE--ELLEELLEEEELLEEEALEELPEPPDlEELERELERLEREIEALgpvnllaieeyeelEER 796
|
650
....*....|....*....
gi 1955886107 812 FMELMQEKADLKERVEELE 830
Cdd:COG1196 797 YDFLSEQREDLEEARETLE 815
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-445 |
7.39e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 7.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 153 SANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKEC---HQKQGALREQLQVHIQTIGILVSE 229
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLarlEAEVEQLEERIAQLSKELTELEAE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 230 KAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ--------QKKADRYNK-------------E 288
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllneeaANLRERLESlerriaaterrleD 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 289 LTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQLQQA 368
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE--ELSEELRELESKRSELRRELEEL 920
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955886107 369 MEERAQLEAHLGqvmesvrQLQMERDKYAENLKGESAMwrqrMQQMSEQVHTLREEKEcsmsrvQELETSLAELRNQ 445
Cdd:TIGR02168 921 REKLAQLELRLE-------GLEVRIDNLQERLSEEYSL----TLEEAEALENKIEDDE------EEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
184-887 |
1.14e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 1.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 184 IEKLKQQNQEITDQLEEEKKECHQKQgALREQLQVHIQTIGilVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRR 263
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIE-QLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 264 RVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLE 343
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 344 mtelllqqfSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLRE 423
Cdd:TIGR02169 403 ---------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 424 EKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQqlQAEAEHLRKELEGLAGQ--------------------- 482
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG--RAVEEVLKASIQGVHGTvaqlgsvgeryataievaagn 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 483 -LQAQVQDNEG-------------LSR-----LNREQEERLLELERAAELWGEQA-----------EARRQILETmqndr 532
Cdd:TIGR02169 548 rLNNVVVEDDAvakeaiellkrrkAGRatflpLNKMRDERRDLSILSEDGVIGFAvdlvefdpkyePAFKYVFGD----- 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 533 TTISRALSQNRELKEQLAelqsgFVKLTNENME----ITS---ALQSEQHVKRELGKKLGELQEKLSELKetvelksQEA 605
Cdd:TIGR02169 623 TLVVEDIEAARRLMGKYR-----MVTLEGELFEksgaMTGgsrAPRGGILFSRSEPAELQRLRERLEGLK-------REL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 606 QSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLllqtqlvDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQL 685
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 686 RAQLSLMahpgegdgldreeeEDEEEEEEEAVavpqpmpsipEDLESREAMVAF--FNSAVASAEEEQARLRGQLKEQRV 763
Cdd:TIGR02169 764 EARIEEL--------------EEDLHKLEEAL----------NDLEARLSHSRIpeIQAELSKLEEEVSRIEARLREIEQ 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 764 RCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTI 843
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQ------------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1955886107 844 GEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQE 887
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
178-677 |
2.64e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.74 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 178 KQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALreqLQVHIQTIGILVSEKAELQTALAHTQHAAR------QKEGES 251
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---LQQHQDRIEQLISEHEVEITGLTEKASSARsqansiQSQLEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 252 EDLASRLQYSR--RRVGELERALSAVSTQQKKADRYNK----ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLV 325
Cdd:pfam15921 304 IQEQARNQNSMymRQLSDLESTVSQLRSELREAKRMYEdkieELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 326 TE--KAGMQLNLEELQKKlemtELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgQVMESVRQLQMERDKYAENLKGE 403
Cdd:pfam15921 384 ADlhKREKELSLEKEQNK----RLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL-KAMKSECQGQMERQMAAIQGKNE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 404 SamwrqrMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQ 482
Cdd:pfam15921 459 S------LEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAiEATNAEITKLRSRVDLKLQE 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 483 LQAQVQDNEGLSRLNREQEERLLELERAAELwgeqAEARRQILETMQNDRTTISRALSQNRELKEQLAElqsgfvKLTNE 562
Cdd:pfam15921 533 LQHLKNEGDHLRNVQTECEALKLQMAEKDKV----IEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEK------EINDR 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 563 NMEitsaLQSEQHVKRELGKKLGELQEKLSELK-ETVEL------KSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEV 635
Cdd:pfam15921 603 RLE----LQEFKILKDKKDAKIRELEARVSDLElEKVKLvnagseRLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEV 678
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1955886107 636 LHNQLLLQTQlvdQLQQQEAQGKAVAEMARQELQETQERLEA 677
Cdd:pfam15921 679 LKRNFRNKSE---EMETTTNKLKMQLKSAQSELEQTRNTLKS 717
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
176-687 |
6.84e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 176 TNKQLNITIEKLKQQNQEIT------DQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEG 249
Cdd:PRK02224 235 TRDEADEVLEEHEERREELEtleaeiEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 250 ESEDLASRLQYSRRRVGELERALSAVSTQQ-------KKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLR 322
Cdd:PRK02224 315 RREELEDRDEELRDRLEECRVAAQAHNEEAeslredaDDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 323 VLVTEKAGMQLNLEELQKKLEMTElllqqfssrceapdanQQLQQAMEERAQLEAHLGQVMESVRQLQMERDkyaenlKG 402
Cdd:PRK02224 395 ELRERFGDAPVDLGNAEDFLEELR----------------EERDELREREAELEATLRTARERVEEAEALLE------AG 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 403 ESAMWRQRMQQmSEQVHTLREEKEcsmsRVQELETSLAELRNQMAEPPPP-EPPAGPSEVEQQLQAEAEHlRKELEGLAG 481
Cdd:PRK02224 453 KCPECGQPVEG-SPHVETIEEDRE----RVEELEAELEDLEEEVEEVEERlERAEDLVEAEDRIERLEER-REDLEELIA 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 482 QLQAQV-QDNEGLSRLNreqeERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLT 560
Cdd:PRK02224 527 ERRETIeEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIA 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 561 NENMEITS---ALQSEQHVKRELGKKLGELQEKLSELKETV-ELKSQEAQSLQQQRDQYLGHLQQYVaayQQLTSEKEVL 636
Cdd:PRK02224 603 DAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKL---DELREERDDL 679
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1955886107 637 HNQLLLQTQLVDQLQQQEAQgkavaemaRQELQETQERLEAATQQNQQLRA 687
Cdd:PRK02224 680 QAEIGAVENELEELEELRER--------REALENRVEALEALYDEAEELES 722
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
177-689 |
8.96e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 177 NKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQKEGESEDLAS 256
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLK----DEQNKIKKQLSEKQKELEQNNKKIKELEK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 257 RLQYSRRRVGELERALSAVSTQQKKADRYNKEltKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLE 336
Cdd:TIGR04523 289 QLNQLKSEISDLNNQKEQDWNKELKSELKNQE--KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 337 ELQKKL-----EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEahlgqvmESVRQLQMERdkyaenlkgesamwrqrm 411
Cdd:TIGR04523 367 EKQNEIeklkkENQSYKQEIKNLESQINDLESKIQNQEKLNQQKD-------EQIKKLQQEK------------------ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 412 QQMSEQVHTLREEKECSMSRVQELETSLAELRNQMaepppPEPPAGPSEVEQQLQA---EAEHLRKELEGLAGQLQAQVQ 488
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELII-----KNLDNTRESLETQLKVlsrSINKIKQNLEQKQKELKSKEK 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 489 DNEGLSRLNreqeerlleleraaelwgeqaearRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITS 568
Cdd:TIGR04523 497 ELKKLNEEK------------------------KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 569 ALQSEQhvkreLGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYlghlqqyvaayqqlTSEKEVLHNQLLLQTQLVD 648
Cdd:TIGR04523 553 ELKKEN-----LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK--------------EKEKKDLIKEIEEKEKKIS 613
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1955886107 649 QLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQL 689
Cdd:TIGR04523 614 SLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
230-691 |
1.52e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 1.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 230 KAELQTALahtQHAARQKEGESEDLASrlqysrrrVGELERALSAVstqqKKADRYNKELtkerDALRLELyknTQSNED 309
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 310 LKQEKSELE--EKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQL--QQAMEERAQLEahlgqvmes 385
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQAA--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 386 vrqlqmerdkYAENLkgesamwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEppagpsEVEQQ 464
Cdd:PRK11281 165 ----------LYANS--------QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 465 LQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtTISRALSQNRE 544
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 545 LKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELKSQEAQ----- 606
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 607 -SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLLlqtQLVDqlqqqeaqgkavaemARQELQEtqerleaatQQNQ 683
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALL---QLLD---------------ERRELLD---------QLNK 421
|
....*...
gi 1955886107 684 QLRAQLSL 691
Cdd:PRK11281 422 QLNNQLNL 429
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
302-681 |
1.60e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.22 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 302 KNTQSNEDLKQEKSELEEKLRvlvtekaGMQLNLEELQKKL------EMTELLLQQFSSRCEapDANQQLQQAMEERAQL 375
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLR-------QAQAELEALKDDNdeetreTLSTLSLRQLESRLA--QTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 376 EAHLgqvmeSVRQLQMERdkyAENLKGESAmwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEp 454
Cdd:PRK11281 148 NSQL-----VSLQTQPER---AQAALYANS---QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 455 pagpsEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtT 534
Cdd:PRK11281 216 -----EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--L 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 535 ISRALSQNRELKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELK 601
Cdd:PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLA 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 602 SQEAQ------SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLL--------LQTQLVDQLQQQEAQGKAVaEMAR 665
Cdd:PRK11281 360 DRIADlrleqfEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALLqllderreLLDQLNKQLNNQLNLAINL-QLNQ 437
|
410
....*....|....*.
gi 1955886107 666 QELQETQERLEAATQQ 681
Cdd:PRK11281 438 QQLLSVSDSLQSTLTQ 453
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
262-445 |
1.73e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 262 RRRVGELERALSAVSTQQKKADRYNkelTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 341
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLA---ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 342 LEMTELLLQQFSSRCEApDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTL 421
Cdd:COG4913 325 LDELEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|....
gi 1955886107 422 REEKECSMSRVQELETSLAELRNQ 445
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAE 427
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
422-860 |
2.62e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 422 REEKECSMSRVQELETSLAELRNQMaeppppeppagpseveQQLQAEAEHLRKELEglagqLQAQVQDNEGLSRLNreqe 501
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQL----------------ERLRREREKAERYQA-----LLKEKREYEGYELLK---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 502 erlleleraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLA-ELQSGFVKLTNENMEITSALQSEQhvkREL 580
Cdd:TIGR02169 231 --------------EKEALERQK-EAIERQLASLEEELEKLTEEISELEkRLEEIEQLLEELNKKIKDLGEEEQ---LRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 581 GKKLGELQEKLSELKETVELKSQEAQSLQQQRdqylghlQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAV 660
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 661 AEMARQELQETQERLEAATQQNQQLRAQLSLMAHpgEGDGLDREEEEDEeeeeeeavavpqpmpsipEDLESREAMVAFF 740
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKR--EINELKRELDRLQ------------------EELQRLSEELADL 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 741 NSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEpeaaapapgtggdsvcgethralqgaMEKLQSRFMELMQEKA 820
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--------------------------LSKYEQELYDLKEEYD 479
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955886107 821 DLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 860
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
196-676 |
2.90e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 196 DQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAV 275
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 276 stqqkkadrynkELTKERDALRLELYKNTQSNEDLKQEKSELEEklrvLVTEKAGMQLNLEELQKKLEmTELLLQQFSSR 355
Cdd:COG4717 129 ------------PLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELE-ELLEQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 356 CEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAmwRQRMQQMSEQ------VHTLREEKECSM 429
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaaLLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 430 SRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLA-GQLQAQVQDNEGLSRLNREQEERLLELE 508
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 509 RAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQS---------EQHVKRE 579
Cdd:COG4717 350 QELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 580 LGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnqlllqtqlvdqlqQQEAQGKA 659
Cdd:COG4717 430 LEEELEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAEL---------------RELAEEWA 493
|
490
....*....|....*..
gi 1955886107 660 VAEMARQELQETQERLE 676
Cdd:COG4717 494 ALKLALELLEEAREEYR 510
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
280-688 |
3.08e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 280 KKADRYNKELTKERDalrlELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAP 359
Cdd:TIGR04523 138 KNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 360 DA---------------NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREE 424
Cdd:TIGR04523 214 KSlesqiselkkqnnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL--------SEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 425 KEcsmSRVQELETSLAELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLqaqVQDNEGLSRLNreqeerl 504
Cdd:TIGR04523 286 LE---KQLNQLKSEISDLNNQ-----------KEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLN------- 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 505 leleraaelwgeqaearrqilETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 584
Cdd:TIGR04523 342 ---------------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 585 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 664
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420
....*....|....*....|....
gi 1955886107 665 RQELQETQERLEAATQQNQQLRAQ 688
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEE 504
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
178-613 |
3.36e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 178 KQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALR---EQLQVHIQTIGILVSEKAELQTALAHTQH-------AARQK 247
Cdd:TIGR04523 71 NNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSkinSEIKNDKEQKNKLEVELNKLEKQKKENKKnidkfltEIKKK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 248 EGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELY---KNTQSNEDLKQEKSELEEKLRVL 324
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSnlkKKIQKNKSLESQISELKKQNNQL 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 325 VTEKAGMQLNLEELQKKLEMTELLLQQFSSrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMErdkyAENLKGE- 403
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKD--EQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSE----ISDLNNQk 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 404 SAMWrqrMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHlrKELEGLAGQL 483
Cdd:TIGR04523 305 EQDW---NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ--NEIEKLKKEN 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 484 QAQVQDNEGL----SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKL 559
Cdd:TIGR04523 380 QSYKQEIKNLesqiNDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1955886107 560 TN----ENMEITSALQSEQHVKRELGKKLGELQEKLSELKetvELKSQEAQSLQQQRD 613
Cdd:TIGR04523 460 DNtresLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK---KLNEEKKELEEKVKD 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
184-674 |
5.69e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 5.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 184 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGIL------VSEKAELQTALAHTQHAARQKEGESEDLASR 257
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekeVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 258 LQYSRRRVGELERALSAVSTQ-------QKKADRYnKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAg 330
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKvkelkelKEKAEEY-IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 331 mqlNLEELQKKLEMTELLLQQFSSRCEapdANQQLQQAMEERAQLEAHLG--------QVMESVRQLQMERDKYAENLKG 402
Cdd:PRK03918 339 ---RLEELKKKLKELEKRLEELEERHE---LYEEAKAKKEELERLKKRLTgltpekleKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 403 ESAMWRQRMQQMSEQVHTLREEK-ECSMSRVQELETSLAELRNQMAE--PPPPEPPAGPSEVEQQLQAEAEHLRKELEGl 479
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAelKRIEKELKEIEEKERKLRKELRELEKVLKK- 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 480 agqlqaqvqdNEGLSRLNREQeerlleleraaelwgEQAEARRQILETMqnDRTTISRALSQNRELKEQLAELqSGFVKL 559
Cdd:PRK03918 492 ----------ESELIKLKELA---------------EQLKELEEKLKKY--NLEELEKKAEEYEKLKEKLIKL-KGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 560 TNENMEITSALQSEqhvKRELGKKLGELQEKLSELKEtvELKSQEAQSLQQQrDQYLGHLQQYVAAYQQLT---SEKEVL 636
Cdd:PRK03918 544 LKKELEKLEELKKK---LAELEKKLDELEEELAELLK--ELEELGFESVEEL-EERLKELEPFYNEYLELKdaeKELERE 617
|
490 500 510
....*....|....*....|....*....|....*...
gi 1955886107 637 HNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 674
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
153-891 |
5.83e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 153 SANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAE 232
Cdd:pfam15921 84 SHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 233 L----QTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKA-----DRYNKELTKERDALRLELYKn 303
Cdd:pfam15921 164 MledsNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSlgsaiSKILRELDTEISYLKGRIFP- 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 304 tqSNEDLKQEKSELEEKLRVLVTEKagmQLNLEEL--QKKLEMTELLLQQFSSRCEAPDANQQL----QQAMEERAQLEA 377
Cdd:pfam15921 243 --VEDQLEALKSESQNKIELLLQQH---QDRIEQLisEHEVEITGLTEKASSARSQANSIQSQLeiiqEQARNQNSMYMR 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 378 HLGQVMESVRQLQME--------RDKYAE-------------NLKGESAMWRQRMQQMSEQVHTL-----REEKECSMSR 431
Cdd:pfam15921 318 QLSDLESTVSQLRSElreakrmyEDKIEElekqlvlanseltEARTERDQFSQESGNLDDQLQKLladlhKREKELSLEK 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 432 VQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQ-DNEGLSRLNREQEERLLELera 510
Cdd:pfam15921 398 EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgKNESLEKVSSLTAQLESTK--- 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 511 aelwgeqaEARRQILETMQNDRTTISralSQNRELKEQLAELQSGFVKLTNENMEITsalqseqhvkrelgkklgelqek 590
Cdd:pfam15921 475 --------EMLRKVVEELTAKKMTLE---SSERTVSDLTASLQEKERAIEATNAEIT----------------------- 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 591 lsELKETVELKSQEAQSLQQQRDqYLGHLQQYVAAYQQLTSEK----EVLHNQLLLQTQLVDQ-------LQQQEAQGKA 659
Cdd:pfam15921 521 --KLRSRVDLKLQELQHLKNEGD-HLRNVQTECEALKLQMAEKdkviEILRQQIENMTQLVGQhgrtagaMQVEKAQLEK 597
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 660 VAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgLDREEEEDEEEEEEEAVA-VPQPMPSIPEDLESREAMVa 738
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSDLE-------LEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRNEL- 669
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 739 ffNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAA----APAPGTGGDSV-----CGETHRALQGAMEKLQ 809
Cdd:pfam15921 670 --NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTrntlKSMEGSDGHAMkvamgMQKQITAKRGQIDALQ 747
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 810 SRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELV 889
Cdd:pfam15921 748 SKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDII 827
|
..
gi 1955886107 890 LR 891
Cdd:pfam15921 828 QR 829
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
415-838 |
8.98e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.96 E-value: 8.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 415 SEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQLQ---AQVQDNE 491
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAE-----SDLEQDYQAASDHLNLVQTALRQQEKierYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 492 GLSRLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSALQ 571
Cdd:PRK04863 360 LEERLE------------------EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL------DVQQTRAIQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 572 SEQHVKR-ELGKKLGEL----QEKLSELKETVELKSQEAQ----SLQQQRDQYLGHLQQYVAAYQqltsekevlhnqllL 642
Cdd:PRK04863 416 YQQAVQAlERAKQLCGLpdltADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSQFEQAYQ--------------L 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 643 QTQLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSLMAHpgegdglDREEEEDEEEEEEEAVAVPQP 722
Cdd:PRK04863 482 VRKIAGEVSRSEAWDVA------RELLRRLREQRHLAEQLQQLRMRLSELEQ-------RLRQQQRAERLLAEFCKRLGK 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 723 MPSIPEDLES----REAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETH 798
Cdd:PRK04863 549 NLDDEDELEQlqeeLEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEF--EDS 626
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955886107 799 RALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSG 838
Cdd:PRK04863 627 QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
459-689 |
1.31e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.24 E-value: 1.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 459 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSrlnreqeerlleleraaelwgeQAEARRQILETMQNDRTTISRA 538
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 539 LSQNRELKEQLAELQSgfvKLTNENMEITSALQSEqhVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 618
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955886107 619 LQQYVA-AYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQL 689
Cdd:COG3206 307 LQQEAQrILASLEAELEALQARE---ASLQAQLAQLEARLAELPE-LEAELRRLEREVEVARELYESLLQRL 374
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
179-700 |
1.66e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 179 QLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRL 258
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 259 QYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAG-MQLNLEE 337
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL-------DDRNMEVQRLEALLKAMKSECQGqMERQMAA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 338 LQKK---LEMTELLLQQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQRMQQM 414
Cdd:pfam15921 453 IQGKnesLEKVSSLTAQLESTKEM--LRKVVEELTAKKMTLESSERTVSDLTASLQ-EKERAIEATNAEITKLRSRVDLK 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 415 SEQVHTLREEK--------ECSMSRVQE------LETSLAELRNQMAEPPPPEPPAGPSEVEQ-QLQAEAEHLRKELEGL 479
Cdd:pfam15921 530 LQELQHLKNEGdhlrnvqtECEALKLQMaekdkvIEILRQQIENMTQLVGQHGRTAGAMQVEKaQLEKEINDRRLELQEF 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 480 A----------GQLQAQVQD---------NEGLSRLNREQEERLLELERAaelwgEQAEARRQILETMQNDRTTISRALS 540
Cdd:pfam15921 610 KilkdkkdakiRELEARVSDlelekvklvNAGSERLRAVKDIKQERDQLL-----NEVKTSRNELNSLSEDYEVLKRNFR 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 541 QNRE--------LKEQLAELQSGFVKLTN--ENMEITS--ALQSEQHVKRELGKKLGE---LQEKLSELKETVELKSQEA 605
Cdd:pfam15921 685 NKSEemetttnkLKMQLKSAQSELEQTRNtlKSMEGSDghAMKVAMGMQKQITAKRGQidaLQSKIQFLEEAMTNANKEK 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 606 QSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQlllqtqlVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQL 685
Cdd:pfam15921 765 HFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ-------ERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
570
....*....|....*
gi 1955886107 686 RAQLSLMAHPGEGDG 700
Cdd:pfam15921 838 KLQHTLDVKELQGPG 852
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
155-426 |
1.67e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 155 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEekkechqkqgaLREQLQVHIQTIGILVSEKAELQ 234
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER-----------LKETIIKNNSEIKDLTNQDSVKE 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 235 TALahtqhaarqkegesEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEK 314
Cdd:TIGR04523 454 LII--------------KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 315 SELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERD 394
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
250 260 270
....*....|....*....|....*....|..
gi 1955886107 395 kyaeNLKGESAMWRQRMQQMSEQVHTLREEKE 426
Cdd:TIGR04523 600 ----DLIKEIEEKEKKISSLEKELEKAKKENE 627
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
162-667 |
1.83e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 162 RYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQgalrEQLQVHIQTIGILVSEKAELQTALAHTq 241
Cdd:TIGR00618 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHP- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 242 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ----QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSEL 317
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQltseRKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNIT 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 318 EEKLRVLvtekagmQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQlQMERDKYA 397
Cdd:TIGR00618 594 VRLQDLT-------EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ-ERVREHAL 665
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 398 ENLKGESAMWRQR------MQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGpSEVEQQLQAEAEH 471
Cdd:TIGR00618 666 SIRVLPKELLASRqlalqkMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLG-SDLAAREDALNQS 744
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 472 LRKELEGLAGQLQAQVQDNEglsrlnreqeerlleleraaelwgeqaearrqiletmqndrttisralsqnRELKEQLAE 551
Cdd:TIGR00618 745 LKELMHQARTVLKARTEAHF---------------------------------------------------NNNEEVTAA 773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 552 LQSGfvkltnenmeitsalQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTS 631
Cdd:TIGR00618 774 LQTG---------------AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLE 838
|
490 500 510
....*....|....*....|....*....|....*..
gi 1955886107 632 EKEVLHNQL-LLQTQLVDQLQQQEAQGKAVAEMARQE 667
Cdd:TIGR00618 839 EKSATLGEItHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
176-641 |
3.80e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 176 TNKQLNITIEKLKQQNQEItDQLEEEKKECHQKQGAL---REQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESE 252
Cdd:COG4717 62 QGRKPELNLKELKELEEEL-KEAEEKEEEYAELQEELeelEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 253 --DLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRL----ELYKNTQSNEDLKQEKSELEEKLRVLVT 326
Cdd:COG4717 141 laELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAEELEELQQRLAELEEELEEAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 327 EKAGMQLNLEEL---------QKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYA 397
Cdd:COG4717 221 ELEELEEELEQLeneleaaalEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 398 ENLKGESAMWRQRM----QQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPppeppagpsevEQQLQAEAEHLR 473
Cdd:COG4717 301 GKEAEELQALPALEeleeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE-----------ELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 474 KELEGLAGqlQAQVQDNEGLSRlnreqeerlleleraaelWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQ 553
Cdd:COG4717 370 QEIAALLA--EAGVEDEEELRA------------------ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 554 sgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVEL--KSQEAQSLQQQRDQYLGHLQQYVAAYQQLTS 631
Cdd:COG4717 430 -----LEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELEELKAELRELAEEWAALKLALELLEE 504
|
490
....*....|
gi 1955886107 632 EKEVLHNQLL 641
Cdd:COG4717 505 AREEYREERL 514
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
155-477 |
3.91e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 3.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 155 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQ-------NQEITDQLEEEKKECHQkqgaLREQLQVHIQTIGILV 227
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKEltnseseNSEKQRELEEKQNEIEK----LKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 228 SEKAELQTALAHTQHAARQKEGESEDLASRLQysrrrvgELERALSAVSTQQKKADRYNKELTKERDALRLELykntqsn 307
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKE-------LLEKEIERLKETIIKNNSEIKDLTNQDSVKELII------- 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 308 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL-----EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQV 382
Cdd:TIGR04523 457 KNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELkskekELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEK 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 383 MESVRQLQ-----MERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMaepppPEPPAG 457
Cdd:TIGR04523 537 ESKISDLEdelnkDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-----EEKEKK 611
|
330 340
....*....|....*....|.
gi 1955886107 458 PSEVEQQLQ-AEAEHLRKELE 477
Cdd:TIGR04523 612 ISSLEKELEkAKKENEKLSSI 632
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
315-669 |
4.38e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 315 SELEEKLRVLVTEKAgMQLNLEELQKKL---EMTELLLqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQM 391
Cdd:TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKreyEGYELLK--------------EKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 392 ERDKYAEnlkgESAMWRQRMQQMSEQVHTLREEKECSM-SRVQELETSLAELRNQMAEPPPPEPPAGpsEVEQQLQAEAE 470
Cdd:TIGR02169 259 EISELEK----RLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAE--ERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 471 HLRKELEGLAGQLQAQVQDNEGLS--------RLNrEQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQN 542
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTeeyaelkeELE-DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 543 RELKEQLAElqsgfvKLTNENMEITSALQseqhvkrelgkKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQY 622
Cdd:TIGR02169 412 QEELQRLSE------ELADLNAAIAGIEA-----------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1955886107 623 VAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQ 669
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
259-484 |
6.12e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 6.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 259 QYSRRRVGELERALSAVSTQqkkADRYNKELTKERDALR--LELYKNTQSNEDLK---QEKSELEEKLRVLVTEKAGMQL 333
Cdd:COG3206 164 QNLELRREEARKALEFLEEQ---LPELRKELEEAEAALEefRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 334 NLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesamwrqrmQQ 413
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ----------QE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955886107 414 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPeppagpsEVE-QQLQAEAEHLRKELEGLAGQLQ 484
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL-------EAElRRLEREVEVARELYESLLQRLE 375
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
577-832 |
6.80e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 577 KRELGKKLGELQEKLSELKETvelkSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnQLLLQTQLVDQLQQQEAQ 656
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA----HEALEDAREQIEL-LEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 657 GKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREeeedeeeeeeeavavpqpmpsipEDLESReam 736
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-----------------------EQLERE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 737 vaffnsaVASAEEEQARLRGQLKEQRVRCRRL-------AHLLASAQKEPEAAAPApgtggdsvCGETHRALQGAMEKLQ 809
Cdd:COG4913 347 -------IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEA--------LEEELEALEEALAEAE 411
|
250 260
....*....|....*....|...
gi 1955886107 810 SRFMELMQEKADLKERVEELEHR 832
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
408-842 |
7.85e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 7.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 408 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQ--LQA 485
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE-----SDLEQDYQAASDHLNLVQTALRQQekIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 486 QVQDNEGLS-RLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 564
Cdd:COG3096 352 YQEDLEELTeRLE------------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 565 EITSALQSEQHVKR-ELGKKLGEL--------QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSekev 635
Cdd:COG3096 408 QQTRAIQYQQAVQAlEKARALCGLpdltpenaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK---- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 636 lhnqlllqtqLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSlmahpgEGDGLDREEEEDEEEEEEE 715
Cdd:COG3096 484 ----------IAGEVERSQAWQTA------RELLRRYRSQQALAQRLQQLRAQLA------ELEQRLRQQQNAERLLEEF 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 716 AVAVPQPMPS---IPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAhllasaQKEPE-AAAPAPGTGGD 791
Cdd:COG3096 542 CQRIGQQLDAaeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA------ARAPAwLAAQDALERLR 615
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1955886107 792 SVCGET---HRALQGAMEKLQSRFMELMQEKADLKERVEELE---HRCIQLSGETDT 842
Cdd:COG3096 616 EQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
308-495 |
7.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 308 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQvmesVR 387
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD----LA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 388 QLQMERDKyaenlkgesamWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQA 467
Cdd:COG4913 689 ALEEQLEE-----------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190
....*....|....*....|....*....|
gi 1955886107 468 EA--EHLRKELEGLAGQLQAQVQDNEGLSR 495
Cdd:COG4913 758 ALgdAVERELRENLEERIDALRARLNRAEE 787
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
185-689 |
8.33e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 185 EKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTI-GILVSEKAELQTALAHTQHAARQKEGESEDLASRLqysrR 263
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEALL----A 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 264 RVG-ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEK----AGMQLNLEEL 338
Cdd:COG4913 370 ALGlPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDAL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 339 QKKLEMT--------ELLlqqfssrcEAPDANQQLQQAME-----ERAQL---EAHLGQVMESVRQLQMER----DKYAE 398
Cdd:COG4913 450 AEALGLDeaelpfvgELI--------EVRPEEERWRGAIErvlggFALTLlvpPEHYAAALRWVNRLHLRGrlvyERVRT 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 399 NLKGESAMWRQRmQQMSEQV----HTLREEKECSMSRVQELE--TSLAELRN---------QMAEPPPPEPPAGPSEVEQ 463
Cdd:COG4913 522 GLPDPERPRLDP-DSLAGKLdfkpHPFRAWLEAELGRRFDYVcvDSPEELRRhpraitragQVKGNGTRHEKDDRRRIRS 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 464 QL------QAEAEHLRKELEGLAGQLQAQVQDNEGLSRlnreqeerlleleraaelWGEQAEARRQILETMQN---DRTT 534
Cdd:COG4913 601 RYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEA------------------ELDALQERREALQRLAEyswDEID 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 535 ISRALSQNRELKEQLAELQSGFVKLtnenmeitsalqseqhvkRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQ 614
Cdd:COG4913 663 VASAEREIAELEAELERLDASSDDL------------------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955886107 615 YLGHLQQYVAAYQQLTSEKEVLHNQLLlqtqlvDQLQQQEAQGKAVAEMARQelqeTQERLEAATQQNQQLRAQL 689
Cdd:COG4913 725 AEEELDELQDRLEAAEDLARLELRALL------EERFAAALGDAVERELREN----LEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
514-902 |
9.17e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 9.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 514 WGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvKRELGKKLGELQEKLSE 593
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE-----KLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 594 LKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLhNQLLLQTQLVDQLQQQEAQGKAvaEMARQELQETQE 673
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAEEL--EELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 674 RLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEA--VAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQ 751
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 752 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGEThRALQGAMEKLQSRFMELMQEKADLKERVEELEH 831
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 832 RCIQLSGETDTIGEYIALYQ--SQRAVLKERHREKEEYISRLA---------QDKEEMKVKLLELQELVLRLVGDRNEWH 900
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQLEELLgeleelleaLDEEELEEELEELEEELEELEEELEELR 452
|
..
gi 1955886107 901 GR 902
Cdd:COG4717 453 EE 454
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
181-445 |
9.23e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.59 E-value: 9.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 181 NITIEKLKQQNQEITDQLEEEKKECHQKQGALRE---------QLQVHIQTIGILVSEKAELQ----TALAHTQHAARQK 247
Cdd:PRK10929 101 NMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREisdslsqlpQQQTEARRQLNEIERRLQTLgtpnTPLAQAQLTALQA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 248 EgesedLASRlqysRRRVGELERA-LSAVSTQqkkadrynkELTKerdaLRLELYKN--TQSNEDLKQEKSELEEkLRVL 324
Cdd:PRK10929 181 E-----SAAL----KALVDELELAqLSANNRQ---------ELAR----LRSELAKKrsQQLDAYLQALRNQLNS-QRQR 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 325 VTEKAgmqlnleelqkkLEMTELLLQQFSSRCEAPDA----NQQLQQAMEERAQ-LEAHLGQVMESVRQLQMERDkyAEN 399
Cdd:PRK10929 238 EAERA------------LESTELLAEQSGDLPKSIVAqfkiNRELSQALNQQAQrMDLIASQQRQAASQTLQVRQ--ALN 303
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1955886107 400 LKGESAMWRQRMQQMSE----QVHTLREekecsMSRVQELETSLAELRNQ 445
Cdd:PRK10929 304 TLREQSQWLGVSNALGEalraQVARLPE-----MPKPQQLDTEMAQLRVQ 348
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
180-685 |
1.10e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 180 LNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKaELQTALAHTQhaARQKEGESEDLASRLQ 259
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDK-EKQVSLLLIQ--ITEKENKMKDLTFLLE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 260 YSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKagmQLNLEELQ 339
Cdd:pfam05483 265 ESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 340 KKLEMTELLLQQF-SSRCEAPDANQQLQQAMEERAqleahlgqvmESVRQLQMERDKYAENLKgESAMWRQRMQQMSEQV 418
Cdd:pfam05483 342 KAKAAHSFVVTEFeATTCSLEELLRTEQQRLEKNE----------DQLKIITMELQKKSSELE-EMTKFKNNKEVELEEL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 419 HTLREEKECSMSRVQELETSLAELR--NQMAEPPPPEPPAGPSEVEQQLQA---EAEHLRKELEGLAGQLQAQ------- 486
Cdd:pfam05483 411 KKILAEDEKLLDEKKQFEKIAEELKgkEQELIFLLQAREKEIHDLEIQLTAiktSEEHYLKEVEDLKTELEKEklkniel 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 487 -------VQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNR-ELKEQLAELQSGFVK 558
Cdd:pfam05483 491 tahcdklLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVReEFIQKGDEVKCKLDK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 559 LTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHN 638
Cdd:pfam05483 571 SEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQ 650
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1955886107 639 QLllqTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQL 685
Cdd:pfam05483 651 KF---EEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEI 694
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
597-684 |
1.26e-04 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 44.50 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 597 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVlhNQLL--------------LQTQLVDQLQQQEAQGKAVAE 662
Cdd:NF038305 102 TRRLSTQALQQINQQAGQQETQLQQQLNQLQAQTSPQQL--NQLLkseqkqgqalasgqLPEEQKEQLQQFKSNPQALDK 179
|
90 100
....*....|....*....|..
gi 1955886107 663 MARQELQETQERLEAATQQNQQ 684
Cdd:NF038305 180 FLAQQLTQIRTQAEEAEKQARL 201
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
263-696 |
1.72e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 263 RRVGELERALSAVSTQQKKadryNKELTKERDAL---RLELYKNTQSNEDLKQEKSELEEKLRVLVT-----EKAGM-QL 333
Cdd:COG3096 279 ERRELSERALELRRELFGA----RRQLAEEQYRLvemARELEELSARESDLEQDYQAASDHLNLVQTalrqqEKIERyQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 334 NLEELQKKLEMtelllqqfssrceapdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQ 413
Cdd:COG3096 355 DLEELTERLEE----------------QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD----VQQTRAIQ 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 414 MSEQVHTLREEKECSmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQL---Q 484
Cdd:COG3096 415 YQQAVQALEKARALC--GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSvADAARRQFEkayelVCKIAGEVersQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 485 AQVQDNEGLSRlnreqeerlleleraaelWGEQaEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 564
Cdd:COG3096 493 AWQTARELLRR------------------YRSQ-QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRI------GQ 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 565 EITSALqseqhvkrelgkklgELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQT 644
Cdd:COG3096 548 QLDAAE---------------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALE 612
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1955886107 645 QLVDQLQQQEAQGKAV----AEMARQELQETQERLEAAtQQNQQLRAQLSLMAHPG 696
Cdd:COG3096 613 RLREQSGEALADSQEVtaamQQLLEREREATVERDELA-ARKQALESQIERLSQPG 667
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
178-879 |
2.19e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 178 KQLNITIEKLKQQNQEITDQLEEEKKECHQKqgalreqLQVHIQTIGILVSEKAELQTALAHTQHAaRQKEGESEDLASR 257
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHER-------KQVLEKELKHLREALQQTQQSHAYLTQK-REAQEEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 258 LQYSRRRVGELERALSAVSTQQKKADRYNKELtkerdALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEE 337
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAA-----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 338 LQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgqvmESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQ 417
Cdd:TIGR00618 337 QSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 418 VHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 497
Cdd:TIGR00618 413 DTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 498 REQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVK 577
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 578 RELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQqyvaayQQLTSEKEVLHNQLLLQTQlvDQLQQQEAQG 657
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH------ALLRKLQPEQDLQDVRLHL--QQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 658 KAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMV 737
Cdd:TIGR00618 645 LTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 738 AFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcGETHRALQGAMEKLQSRFMELMQ 817
Cdd:TIGR00618 725 NASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLKT 803
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1955886107 818 EKADLKERVEE----LEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMK 879
Cdd:TIGR00618 804 LEAEIGQEIPSdediLNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
287-603 |
2.20e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 287 KELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqQLQ 366
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEKLEKEVKELEELKE------EIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 367 QAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRN 444
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 445 QMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE-ARR 522
Cdd:PRK03918 322 EINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEkAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 523 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITsalqsEQHVKRELGKKLGELQEKLSELKETVELKS 602
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-----EEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
.
gi 1955886107 603 Q 603
Cdd:PRK03918 477 K 477
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
244-525 |
2.43e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.12 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 244 ARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKNTQSNEDLKQEKSELEEKL 321
Cdd:pfam05557 306 ARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRaiLESYDKELTMSNYSPQLLERIEEA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 322 RVLVTEkagMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQL---QQAMEERAQLEAHLGQVMESVRQLQMERDKYAE 398
Cdd:pfam05557 386 EDMTQK---MQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQAlrqQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 399 nlkgesamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAelrnqmaeppppeppagpSEVEQQLQAEAEHLRKELEG 478
Cdd:pfam05557 463 ---------QKNELEMELERRCLQGDYDPKKTKVLHLSMNPA------------------AEAYQQRKNQLEKLQAEIER 515
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1955886107 479 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQIL 525
Cdd:pfam05557 516 LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
243-424 |
2.57e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 243 AARQKEGESEDLASRLQY--SRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLK-QEKSELEE 319
Cdd:COG4913 266 AARERLAELEYLRAALRLwfAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLER 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 320 KLRVLVTEKAGMQLNLEELQKKLEMTELLL----QQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDK 395
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAE--AAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
170 180
....*....|....*....|....*....
gi 1955886107 396 yaenLKGESAMWRQRMQQMSEQVHTLREE 424
Cdd:COG4913 424 ----LEAEIASLERRKSNIPARLLALRDA 448
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
643-892 |
2.75e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 643 QTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgldreeeedeeeeeeeavavpqp 722
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 723 mpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRvrcRRLAHLLASAQKEPEAAAPAPGTGGDSVcgethRALQ 802
Cdd:COG4942 69 -----RRIRALEQELAALEAELAELEKEIAELRAELEAQK---EELAELLRALYRLGRQPPLALLLSPEDF-----LDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 803 GAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKL 882
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250
....*....|
gi 1955886107 883 LELQELVLRL 892
Cdd:COG4942 216 AELQQEAEEL 225
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
516-689 |
3.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 516 EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLtnenmeitsALQSEQHVKRELGKKLGELQEKLSELK 595
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 596 ETVELKSQEAQSLQQQRDQY-LGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 674
Cdd:COG4913 316 ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170
....*....|....*
gi 1955886107 675 LEAATQQNQQLRAQL 689
Cdd:COG4913 396 LEEELEALEEALAEA 410
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
267-486 |
4.03e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 267 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 346
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 347 LLLQQFSsrceapdanqQLQQAMEERAQLEAHLGQ--VMESVRQLQMERdKYAENLKGESAMWRQRMQQMSEQVHTLREE 424
Cdd:COG4942 104 EELAELL----------RALYRLGRQPPLALLLSPedFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955886107 425 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQ 486
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelaeLQQEAEELEALIARLEAEAAAA 239
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
186-877 |
4.18e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 186 KLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTalahTQHAARQKEGESEDLASRL---QYSR 262
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLES----SREIVKSYENELDPLKNRLkeiEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 263 RRVGELERALSAVSTQQKKADRYNKELT-----------------------------KERDALRLELYKNTQSNEDLKQE 313
Cdd:TIGR00606 262 SKIMKLDNEIKALKSRKKQMEKDNSELElkmekvfqgtdeqlndlyhnhqrtvrekeRELVDCQRELEKLNKERRLLNQE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 314 KSELEeklrvlvTEKAGMQLNLEELQKKLEMTELLLQQFSSRCE------APDANQQLQQA-------MEERAQLEAHL- 379
Cdd:TIGR00606 342 KTELL-------VEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgferGPFSERQIKNFhtlvierQEDEAKTAAQLc 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 380 GQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR------EEKECSMSRVQELETSLAELRNQMAEPPPPE 453
Cdd:TIGR00606 415 ADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvikelQQLEGSSDRILELDQELRKAERELSKAEKNS 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 454 PPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNdRT 533
Cdd:TIGR00606 495 LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN-KK 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 534 TISRALSQNRELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELGKK---LGELQEKLSELKETVELKS------QE 604
Cdd:TIGR00606 574 QLEDWLHSKSKEINQTRD------RLAKLNKELASLEQNKNHINNELESKeeqLSSYEDKLFDVCGSQDEESdlerlkEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 605 AQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLeaatqQNQQ 684
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL-----KKKE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 685 LRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAvAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQA------RLRGQL 758
Cdd:TIGR00606 723 KRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimeRFQMEL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 759 KEQRvrcRRLAHLLASAQkepeaaapapGTGGDSVCGETHRALQGAMEKLQ---SRFMELMQEKADLKERVEELEHRCIQ 835
Cdd:TIGR00606 802 KDVE---RKIAQQAAKLQ----------GSDLDRTVQQVNQEKQEKQHELDtvvSKIELNRKLIQDQQEQIQHLKSKTNE 868
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 1955886107 836 LSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEE 877
Cdd:TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-321 |
4.61e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 155 NLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQ----------GALREQLQVHIQTIG 224
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRaeleevdkefAETRDELKDYREKLE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 225 ILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNT 304
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
170
....*....|....*..
gi 1955886107 305 QSNEDLKQEKSELEEKL 321
Cdd:TIGR02169 476 EEYDRVEKELSKLQREL 492
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
462-863 |
5.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 5.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 462 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALS- 540
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 541 -----QNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSEL----KETVELKSQEAQSLQQQ 611
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 612 RDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQtQLVDQLQQQEAQGKAVAEMA--------------------------- 664
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 665 --------RQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLE----- 731
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelqle 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 732 -SREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQS 810
Cdd:COG4717 367 eLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1955886107 811 RFMELMQEKADLKERVEELEhrciqlsgETDTIGEYIALYQSQRAVLKERHRE 863
Cdd:COG4717 447 ELEELREELAELEAELEQLE--------EDGELAELLQELEELKAELRELAEE 491
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
192-418 |
5.80e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 192 QEITDQLEEEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERA 271
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 272 LSAvstQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEEL-QKKLEMTELLLQ 350
Cdd:COG4942 99 LEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELaALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955886107 351 QFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQV 418
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
185-604 |
6.04e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 185 EKLKQQNQEITDQLEEEKKECHQKQGALREQLQVhiqtigilvSEKAELQTALAHTQHAARQKEGE----SEDLASRLQY 260
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK---------AEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEE 1402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 261 SRRRVGELERALSAvstqQKKADRYNKELTKERDALRL-----------ELYKNTQSNEDLKQEKSELEEKLRV-LVTEK 328
Cdd:PTZ00121 1403 DKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAkkkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKAdEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 329 AGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQL-QMERDKYAENLKGESAMW 407
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkKAEEKKKADELKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 408 RQRMQQMSEQVHTLREEKECSMSRVQEL----ETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAE--------------- 468
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEelkkaeeekkkveql 1638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 469 ----------AEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 538
Cdd:PTZ00121 1639 kkkeaeekkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955886107 539 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSE------QHVKRELGKKLGEL-QEKLSELKETVELKSQE 604
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekkkiAHLKKEEEKKAEEIrKEKEAVIEEELDEEDEK 1791
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
361-686 |
6.38e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 6.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 361 ANQQLQQAMEERAQLEAHLGQVmESVRQLQMERDKYAENLKGESAMWRQRMQQMS----EQVHTLREEKECSMSRVQELE 436
Cdd:TIGR00618 154 FAQFLKAKSKEKKELLMNLFPL-DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 437 TSLAELRnqmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRlnreqEERLLELERAAELWGE 516
Cdd:TIGR00618 233 EALQQTQ---QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR-----ARKAAPLAAHIKAVTQ 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 517 QAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTN---ENMEITSALQSEQHVKRELGKKLGELQ--EKL 591
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQhiHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 592 SELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQET 671
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330
....*....|....*
gi 1955886107 672 QERLEAATQQNQQLR 686
Cdd:TIGR00618 465 AQSLKEREQQLQTKE 479
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
544-690 |
7.51e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 544 ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKR--ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH--L 619
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvI 265
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955886107 620 QQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA-VAEMARQELQETQERLEAATQQNQQLRAQLS 690
Cdd:COG3206 266 QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLA 337
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
163-832 |
7.82e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 7.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 163 YQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEE---EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAH 239
Cdd:PRK04863 416 YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEateELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAW 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 240 tqHAARQKEGESED---LASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKerdalrlelykNTQSNEDLKQEKSE 316
Cdd:PRK04863 496 --DVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK-----------NLDDEDELEQLQEE 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 317 LEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRC----EAPDANQQLQ----QAMEERAQLEAHLGQVMESVRQ 388
Cdd:PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawlAAQDALARLReqsgEEFEDSQDVTEYMQQLLERERE 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 389 LQMERDKYAEnlkgesamwrqRMQQMSEQVHTLREEKECSMSRVQELE-----TSLAELRNQMAEPPPPEPPAGPSE--- 460
Cdd:PRK04863 643 LTVERDELAA-----------RKQALDEEIERLSQPGGSEDPRLNALAerfggVLLSEIYDDVSLEDAPYFSALYGParh 711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 461 --VEQQLQAEAEHLrKELEGLAGQLQAQVQDNEGL--SRLNREQEERLLELERAAELW-----------GEqaEARRQIL 525
Cdd:PRK04863 712 aiVVPDLSDAAEQL-AGLEDCPEDLYLIEGDPDSFddSVFSVEELEKAVVVKIADRQWrysrfpevplfGR--AAREKRI 788
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 526 ETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVkRELGKKLGELQEKLSELKETVelksqea 605
Cdd:PRK04863 789 EQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAEL-RQLNRRRVELERALADHESQE------- 860
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 606 qslQQQRDQYLgHLQQYVAAYQQLTSEKEVLHNQLLLQ--TQLVDQLQQQE-------AQGKAVAEMARQ--ELQETQER 674
Cdd:PRK04863 861 ---QQQRSQLE-QAKEGLSALNRLLPRLNLLADETLADrvEEIREQLDEAEeakrfvqQHGNALAQLEPIvsVLQSDPEQ 936
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 675 LEAATQQNQQLRAQLSLMAhpGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQARL 754
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAK--QQAFALTEVVQRRAHFSYEDAA----------EMLAKNSDLNEKLRQRLEQAEQERTRA 1004
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1955886107 755 RGQLKEQRVRCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKAdlKERVEELEHR 832
Cdd:PRK04863 1005 REQLRQAQAQLAQYNQVLASLKSSYDAKR------------QMLQELKQELQDLGVPADSGAEERA--RARRDELHAR 1068
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
267-341 |
8.87e-04 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.41 E-value: 8.87e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955886107 267 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 341
Cdd:COG4026 132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
243-615 |
1.30e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 243 AARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRynkeltkERDALRLELYKNTQSNEDLKQEKSELEEKLR 322
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-------RLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 323 VLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGqvMESVRQLQMERDKyaenLKG 402
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE--DLHKLEEALNDLEARLS--HSRIPEIQAELSK----LEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 403 ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmaeppppeppagpsevEQQLQAEAEHLRKELEGLAGQ 482
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ----------------IKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 483 L---QAQVQDNEGlsrlnreqeeR----LLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsg 555
Cdd:TIGR02169 870 LeelEAALRDLES----------RlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-- 937
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955886107 556 fvKLTNENMEITSALQSEQHVKRELGKKLGELQ-----------------EKLSELKETVELKSQEAQSLQQQRDQY 615
Cdd:TIGR02169 938 --DPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeyeevlKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
150-596 |
1.37e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 150 PASSANLKDLESRYQQL---AVALDSSYVTNKQLNITIEKLKQQNQEITDQLEE-------------------EKKECHQ 207
Cdd:PRK03918 217 PELREELEKLEKEVKELeelKEEIEELEKELESLEGSKRKLEEKIRELEERIEElkkeieeleekvkelkelkEKAEEYI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 208 KQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELE---RALSAVSTQQKKADR 284
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEerhELYEEAKAKKEELER 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 285 YNKELT-KERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTElllqqfSSRCEAPDANQ 363
Cdd:PRK03918 377 LKKRLTgLTPEKLEKEL-------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK------KAKGKCPVCGR 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 364 QLQqameeraqlEAHLGQVMEsvrqlqmerdKYAENLKGESAmwrqRMQQMSEQVHTLREEK---ECSMSRVQELeTSLA 440
Cdd:PRK03918 444 ELT---------EEHRKELLE----------EYTAELKRIEK----ELKEIEEKERKLRKELrelEKVLKKESEL-IKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 441 ELRNQMAEPPPPEPPAGPSEVEQQLQaEAEHLRKELEGLAGQLQAQvqdNEGLSRLNREQEERLLELERAAELWGEQAEA 520
Cdd:PRK03918 500 ELAEQLKELEEKLKKYNLEELEKKAE-EYEKLKEKLIKLKGEIKSL---KKELEKLEELKKKLAELEKKLDELEEELAEL 575
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955886107 521 RRQILEtmqndrttisRALSQNRELKEQLAELQS---GFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKE 596
Cdd:PRK03918 576 LKELEE----------LGFESVEELEERLKELEPfynEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
558-699 |
1.55e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 42.44 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 558 KLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLghLQQYVAAYQQL-TSEKEVl 636
Cdd:COG1193 508 LLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEIL--EKAREEAEEILrEARKEA- 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955886107 637 hnqlllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGD 699
Cdd:COG1193 585 -------EELIRELREAQAEEEELKE-ARKKLEELKQELEEKLEKPKKKAKPAKPPEELKVGD 639
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
228-379 |
1.72e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 228 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL----SAVSTQQKKADRYNKEL-----TKERDALRL 298
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIkrleLEIEEVEARIKKYEEQLgnvrnNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 299 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcEAPDANQQLQQAMEERAQLEAH 378
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-----ELAELEAELEELEAEREELAAK 171
|
.
gi 1955886107 379 L 379
Cdd:COG1579 172 I 172
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
226-692 |
1.85e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 226 LVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKN 303
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 304 TQSNEDLKQEKSELEEKlrvlVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqqlqqameeraqLEAHLGQVM 383
Cdd:pfam05483 163 TCARSAEKTKKYEYERE----ETRQVYMDLNNNIEKMILAFEELRVQAENARLE-----------------MHFKLKEDH 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 384 ESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELEtslaelrnqmaeppppEPPAGPSEVEQ 463
Cdd:pfam05483 222 EKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE----------------EKTKLQDENLK 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 464 QLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqeerLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNR 543
Cdd:pfam05483 286 ELIEKKDHLTKELEDIKMSLQRSMSTQKAL----------EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 544 ELKEQLAELqsgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEkLSELKETVELKSQEAQSLQQQRDQYLGHLQQYV 623
Cdd:pfam05483 356 ATTCSLEEL------LRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILAEDEKLLDEKKQFE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955886107 624 AAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLM 692
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
307-497 |
1.87e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 307 NEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKlemtellLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESV 386
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 387 RQLQMERDKYAENLKGESAMWRQ-----RMQQMSEQVHTLREEKECSMSR-------VQELETSLAELRNQMAEPPPPEP 454
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1955886107 455 PAGPSEVeQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 497
Cdd:COG3206 316 ASLEAEL-EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
408-621 |
1.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 408 RQRMQQMSEQVHTLREEKEcSMSRVQELETSLAELRNQMAEPPPPEPPAGPseveQQLQAEAEHLRKELEGLAGQL-QAQ 486
Cdd:COG4913 241 HEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRL----ELLEAELEELRAELARLEAELeRLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 487 VQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALsqnRELKEQLAELQSGFVKLTNENMEI 566
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1955886107 567 TSALQSEQHvkrELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 621
Cdd:COG4913 393 LEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
288-699 |
3.74e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 288 ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVT--EKAGMQLNL----EELQKKLEMTELLLQQFSSRCEApdA 361
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLvqtaLRQQEKIERYQADLEELEERLEE--Q 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 362 NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQMSEQVHTLREEKECSMSR---VQELETS 438
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD----VQQTRAIQYQQAVQALERAKQLCGLPdltADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 439 LAELRNQmaeppPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQLQAQVQDNEGLSRLNREQEERLLEleraae 512
Cdd:PRK04863 444 LEEFQAK-----EQEATEELLSLEQKLSvAQAAHSQFEqayqlVRKIAGEVSRSEAWDVARELLRRLREQRHLA------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 513 lwgEQAEARRQILETMQndrttisRALSQNRELKEQLAElqsgFVKLTNENMEITSALQSEQhvkRELGKKLGELQEKLS 592
Cdd:PRK04863 513 ---EQLQQLRMRLSELE-------QRLRQQQRAERLLAE----FCKRLGKNLDDEDELEQLQ---EELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 593 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlQTQLVDQLQQQeaqgkavaeMARQELQETQ 672
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFE-DSQDVTEYMQQ---------LLERERELTV 645
|
410 420
....*....|....*....|....*..
gi 1955886107 673 ERLEAATQQnQQLRAQLSLMAHPGEGD 699
Cdd:PRK04863 646 ERDELAARK-QALDEEIERLSQPGGSE 671
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
213-614 |
4.98e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 213 REQLQVHIQTIGILVSEKAELQTALAHTQHAArqkegesEDLASRLQYSRRRVGELERALSAVS----------TQQKKA 282
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-------VEMARELAELNEAESDLEQDYQAASdhlnlvqtalRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 283 DRYNKELtkerDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTEL----------LLQQF 352
Cdd:PRK04863 351 ERYQADL----EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTraiqyqqavqALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 353 SSRCEAPDANqqLQQAMEERAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQRMQQMSEQVhtlreEKECSMSRV 432
Cdd:PRK04863 427 KQLCGLPDLT--ADNAEDWLEEFQAKEQEATEELLSLE-QKLSVAQAAHSQFEQAYQLVRKIAGEV-----SRSEAWDVA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 433 QELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGlagQLQAQVQDNEGLSRLNREQEERLLELERAAE 512
Cdd:PRK04863 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK---RLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 513 LWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvkrelgkklgELQEKLS 592
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ--------------QLLERER 641
|
410 420
....*....|....*....|..
gi 1955886107 593 ELKETVELKSQEAQSLQQQRDQ 614
Cdd:PRK04863 642 ELTVERDELAARKQALDEEIER 663
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
364-689 |
5.28e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 364 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELR 443
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 444 NQMAEPPPPeppagpseveqqlQAEAEHLRKELEGLAGQLQAQVQDNEG-LSRLNREQEERLLELeraaelwGEQAEARR 522
Cdd:pfam07888 115 EEKDALLAQ-------------RAAHEARIRELEEDIKTLTQRVLERETeLERMKERAKKAGAQR-------KEEEAERK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 523 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRE---LGKKLGELQEKLSELKETVE 599
Cdd:pfam07888 175 QLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneaLLEELRSLQERLNASERKVE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 600 LKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQ----TQLVDQLQQQEAQGKAVAEMARQELQETQERL 675
Cdd:pfam07888 255 GLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGrarwAQERETLQQSAEADKDRIEKLSAELQRLEERL 334
|
330
....*....|....
gi 1955886107 676 EAATQQNQQLRAQL 689
Cdd:pfam07888 335 QEERMEREKLEVEL 348
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
582-690 |
6.25e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 6.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 582 KKLGELQEKLSELKETVELKSQEAQSLQQQrdqyLGHLQQYVAAYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVA 661
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDS----VANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQEL 125
|
90 100
....*....|....*....|....*....
gi 1955886107 662 EMARQELQETQERLEAATQQNQQLRAQLS 690
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLA 154
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
308-689 |
6.64e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 6.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 308 EDLKQEKSELEEKLrvlvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 387
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 388 QLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREEKecSMSRVQELETSLAELrnQMAEPPPPEPPAGPSEVEQQLQA 467
Cdd:PRK04863 862 QQRSQLEQAKEGL--------SALNRLLPRLNLLADET--LADRVEEIREQLDEA--EEAKRFVQQHGNALAQLEPIVSV 929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 468 eaehLRKELEGLAgQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQND--RTTISRALSQNREL 545
Cdd:PRK04863 930 ----LQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEklRQRLEQAEQERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 546 KEQLAELQSGFvkltNENMEITSALQSEQHVKRELgkkLGELQEKLSELkeTVELKSQEAQSLQQQRDQylghlqqyvaa 625
Cdd:PRK04863 1005 REQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRDE----------- 1064
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955886107 626 yqqltsekevLHNQLLLQTQLVDQLQQQEAQGKAvaemarqELQETQERLEAATQQNQQLRAQL 689
Cdd:PRK04863 1065 ----------LHARLSANRSRRNQLEKQLTFCEA-------EMDNLTKKLRKLERDYHEMREQV 1111
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
602-848 |
7.24e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 602 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 681
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 682 NQQLRAQLSLMAhpgegdgldREEEEDEEEEEEEAVAVPQPmpsiPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQ 761
Cdd:COG4942 99 LEAQKEELAELL---------RALYRLGRQPPLALLLSPED----FLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 762 RVRCRRLAHLLASAQKEPEAAapapgtggdsvcgetHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETD 841
Cdd:COG4942 166 RAELEAERAELEALLAELEEE---------------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....*..
gi 1955886107 842 TIGEYIA 848
Cdd:COG4942 231 RLEAEAA 237
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
159-599 |
7.93e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 7.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 159 LESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDqleeekkechqkqgaLREQLQVHIQTIGILVSEKAELQTALA 238
Cdd:TIGR04523 248 ISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE---------------LEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 239 HTQhaARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYK-------NTQSNEDLK 311
Cdd:TIGR04523 313 KSE--LKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKlkkenqsYKQEIKNLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 312 QEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQM 391
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE--TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 392 ERDKYAENLKGESAMWRQRMQ-----------------QMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEP 454
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKelkskekelkklneekkELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 455 PAGPSEVEQQLQAEAEHLRKELEGLAgqlqaqvQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDrtt 534
Cdd:TIGR04523 549 KDDFELKKENLEKEIDEKNKEIEELK-------QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE--- 618
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955886107 535 ISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVE 599
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMK 683
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
184-390 |
8.43e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.94 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 184 IEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVHIQ----TIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQ 259
Cdd:COG5185 372 LSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILAtledTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELN 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 260 YSRRRVGELERalsavSTQQKKADRYNKELTKERDALrlelykntqsNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQ 339
Cdd:COG5185 452 KVMREADEESQ-----SRLEEAYDEINRSVRSKKEDL----------NEELTQIESRVSTLKATLEKLRAKLERQLEGVR 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1955886107 340 KKLEMTELLLQQFSSR--CEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQ 390
Cdd:COG5185 517 SKLDQVAESLKDFMRArgYAHILALENLIPASELIQASNAKTDGQAANLRTAV 569
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
397-635 |
8.45e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 397 AENLKGESAMWRQRMQQMSEQVHTLREekecsmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKEL 476
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 477 EglagQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQndrttisRALSQN---RELKEQLAELQ 553
Cdd:COG3206 236 A----EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSA-------RYTPNHpdvIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 554 SGFVKLTNENM-EITSALQSEQHVKRELGKKLGELQEKLSELKEtvelKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSE 632
Cdd:COG3206 305 AQLQQEAQRILaSLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
...
gi 1955886107 633 KEV 635
Cdd:COG3206 381 EAL 383
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
299-678 |
8.72e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 299 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQlnlEELQKKlemTELLLQQFSSRCEAPDANQQLQQAMEEraqLEAH 378
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAE---TELCAEAEEMRARLAARKQELEEILHE---LESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 379 LGQVMESVRQLQMERDKYAENLKGesamWRQRMQQMSEQVHTLREEKECSMSRVQELE--TSLAELRNQMAEPPPPEPPA 456
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQD----LEEQLDEEEAARQKLQLEKVTTEAKIKKLEedILLLEDQNSKLSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 457 GPSEVEQQLqAEAEHLRKELEGLAGQLQAQVQDNEGlsRLNREQEERLLELERAAELWGEQAEARRQILEtmqndrttis 536
Cdd:pfam01576 160 RISEFTSNL-AEEEEKAKSLSKLKNKHEAMISDLEE--RLKKEEKGRQELEKAKRKLEGESTDLQEQIAE---------- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 537 ralsqnreLKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVEL-KSQEAQSLQQQRD-- 613
Cdd:pfam01576 227 --------LQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeRAARNKAEKQRRDlg 298
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955886107 614 -------QYLGHLQQYVAAYQQLTS--EKEVLHnqllLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAA 678
Cdd:pfam01576 299 eelealkTELEDTLDTTAAQQELRSkrEQEVTE----LKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQA 368
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
147-618 |
9.42e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.03 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 147 GEGPASSANLKDLESRYQQLAVALDSSYVTNKQLNITIEKLKQQNQEITDQLEEEKKECHQKQGALREQLQVhiqtigil 226
Cdd:TIGR00606 405 DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILEL-------- 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 227 vseKAELQTALAHTQHAarQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKE------LTKERDALRLEL 300
Cdd:TIGR00606 477 ---DQELRKAERELSKA--EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTrtqmemLTKDKMDKDEQI 551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 301 YKNTQSNED---------------------LKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSR---- 355
Cdd:TIGR00606 552 RKIKSRHSDeltsllgyfpnkkqledwlhsKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdv 631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 356 --CEAPDAN-----QQLQQAMEERAQLEAHLG-----------------QVMESVRQLQMERDKYAENLKGESAMWRQRM 411
Cdd:TIGR00606 632 cgSQDEESDlerlkEEIEKSSKQRAMLAGATAvysqfitqltdenqsccPVCQRVFQTEAELQEFISDLQSKLRLAPDKL 711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 412 QQMSEQVHTLREEKECSM-------SRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE------- 477
Cdd:TIGR00606 712 KSTESELKKKEKRRDEMLglapgrqSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAkvcltdv 791
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 478 GLAGQLQAQVQDNEglsrlnreQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNREL----KEQLAELQ 553
Cdd:TIGR00606 792 TIMERFQMELKDVE--------RKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLiqdqQEQIQHLK 863
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955886107 554 SGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQ--QQRDQYLGH 618
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEkdQQEKEELIS 930
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
516-762 |
9.56e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 40.20 E-value: 9.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 516 EQAEARRQILET-MQNDRTTISRALSQnRELKEQLAELQSGFVKltnenmeiTSALQSEQhvkRELGKKLGELQEKLSEL 594
Cdd:NF012221 1565 ERAEADRQRLEQeKQQQLAAISGSQSQ-LESTDQNALETNGQAQ--------RDAILEES---RAVTKELTTLAQGLDAL 1632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 595 KETvelKSQEAQSLQQQRDQYLGHLQQYVAayQQLTSEKEVLHNQLL-LQTQLVDQLQQ-QEAQGKAVAEMARQElqetq 672
Cdd:NF012221 1633 DSQ---ATYAGESGDQWRNPFAGGLLDRVQ--EQLDDAKKISGKQLAdAKQRHVDNQQKvKDAVAKSEAGVAQGE----- 1702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 673 ERLEAATQQNQQLRAQlslmAHPGEGDGLDREEEEDEEEEEEEAVAvpqpmpsipEDLESR---EAMVAFFNSAVASAEE 749
Cdd:NF012221 1703 QNQANAEQDIDDAKAD----AEKRKDDALAKQNEAQQAESDANAAA---------NDAQSRgeqDASAAENKANQAQADA 1769
|
250
....*....|...
gi 1955886107 750 EQARLRGQLKEQR 762
Cdd:NF012221 1770 KGAKQDESDKPNR 1782
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
125-475 |
9.77e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 125 ESLRQLSQQLNGLVCESATCVNGEGPASSANLKDLESRYQQLAVALdssyvtnKQLNITIEKLKQQNQEITDQLEE-EKK 203
Cdd:COG4717 163 EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRL-------AELEEELEEAQEELEELEEELEQlENE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 204 ECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKAD 283
Cdd:COG4717 236 LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 284 RYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQ 363
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955886107 364 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKyaenlkgesAMWRQRMQQMSEQVHTLREEkecsmsrVQELETSLAELR 443
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDE---------EELEEELEELEEELEELEEE-------LEELREELAELE 459
|
330 340 350
....*....|....*....|....*....|..
gi 1955886107 444 NQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKE 475
Cdd:COG4717 460 AELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| |
