|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3704-3785 |
2.38e-25 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 101.90 E-value: 2.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3704 KYLRAESFRKALIYQKKYLLLLLGGFQECEDATLALLARMGGQPAFTdleviTNRPKGFTRFRSAVRVSIAISRMKFLVR 3783
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDD-----RPSRKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 22538387 3784 RW 3785
Cdd:pfam10495 76 EW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
277-1006 |
8.67e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 8.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 277 LEEQDHLLEDYQKKKEdftmQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTAD 356
Cdd:TIGR02168 205 LERQAEKAERYKELKA----ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 357 KLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNhkdsqfetdivqrmeQETQRKLEQLRAE 436
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL---------------DELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 437 LDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEEL 516
Cdd:TIGR02168 346 LEEL--KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 517 GLILE-----EKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEA 591
Cdd:TIGR02168 424 EELLKkleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 592 EvTNYKIKLEMLEKEKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDN---------LGIH 662
Cdd:TIGR02168 504 F-SEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNelgrvtflpLDSI 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 663 YKQQIDGLQNEMSQKIETMQFEKDNLITKQNQL-------------------ILEISKLKDLQQSLV------------- 710
Cdd:TIGR02168 582 KGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 711 NSKSEEMTLQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDM 790
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEE---LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 791 LKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYAC 870
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 871 LLKVKDDLEDSKNKQELEYKSkLKALNEElhLQRINPTTVKMKSSVFDEDktfvaetlEMGEVVEKDTTELMEKLEVTKR 950
Cdd:TIGR02168 819 AANLRERLESLERRIAATERR-LEDLEEQ--IEELSEDIESLAAEIEELE--------ELIEELESELEALLNERASLEE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 951 EKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRA 1006
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-900 |
1.07e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 1.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 207 ITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLED 286
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 287 YQKKKEDFTMQISFLQEKIkvyemEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 366
Cdd:TIGR02168 314 LERQLEELEAQLEELESKL-----DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 367 VQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNH----KDSQFETDIVQRMEQETQRKLEQLRAELDEMYG 442
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 443 ------QQIVQMKQEL--IRQHMAQMEEMKTRHKGE-------MENALRSYSNITVNEDQIK----------------LM 491
Cdd:TIGR02168 469 eleeaeQALDAAERELaqLQARLDSLERLQENLEGFsegvkalLKNQSGLSGILGVLSELISvdegyeaaieaalggrLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 492 NVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQrqleDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLST---- 567
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGT----EIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllgg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 568 ---VEDLKAEIVSASESRKELEL-------------------KHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 625
Cdd:TIGR02168 625 vlvVDDLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 626 RTQLLfSHEEELSKLKEDLEiEHRINIEKLKDNLGIHYK------QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI 699
Cdd:TIGR02168 704 RKELE-ELEEELEQLRKELE-ELSRQISALRKDLARLEAeveqleERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 700 SKLKDLQQSlVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 779
Cdd:TIGR02168 782 AEIEELEAQ-IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE 860
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 780 LKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEV 859
Cdd:TIGR02168 861 IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940
|
730 740 750 760
....*....|....*....|....*....|....*....|.
gi 22538387 860 NYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEEL 900
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2029-2432 |
1.01e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 1.01e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2029 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQT 2108
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2109 REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgaveakpelsle 2188
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER--------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2189 vqLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 2265
Cdd:TIGR02168 826 --LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2266 KESDamstqdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ---QQLKITTDNKVIEEKNELIRDLETQIEClmsdqecvK 2342
Cdd:TIGR02168 904 RELE---------------SKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEAL--------E 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2343 RNREEEIEQLNEVIEKLQQELANIGqKTSMNA----HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKE 2418
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELG-PVNLAAieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE---ARERFKD 1036
|
410
....*....|....
gi 22538387 2419 TNFKMNQLTQELFS 2432
Cdd:TIGR02168 1037 TFDQVNENFQRVFP 1050
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-884 |
2.14e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 2.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 160 MESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQ 239
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 240 IQFQQLQASetlrnstHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENS 319
Cdd:TIGR02168 351 EELESLEAE-------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 320 NKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQK----------ERQ 389
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARldslerlqenLEG 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 390 SSEEIKQLM-------GTVEELQKRNHKDSQFETDI-----------------VQRMEQETQRKLEQLRA---ELDEMYG 442
Cdd:TIGR02168 504 FSEGVKALLknqsglsGILGVLSELISVDEGYEAAIeaalggrlqavvvenlnAAKKAIAFLKQNELGRVtflPLDSIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 443 QQI------VQMKQELIRQHMAQMEEMKTRHKGEMENAL--------------------RSYSNITVNEDQIK---LMNV 493
Cdd:TIGR02168 584 TEIqgndreILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldnalelakklrPGYRIVTLDGDLVRpggVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 494 AINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKA 573
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 574 EIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQlLFSHEEELSKLKEDLeiehrinie 653
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-LEAQIEQLKEE-LKALREALDELRAEL--------- 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 654 klkDNLGIHYKQQIDGLQNEMSQKIETmqfekdnliTKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILrq 733
Cdd:TIGR02168 813 ---TLLNEEAANLRERLESLERRIAAT---------ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-- 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 734 eEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMlkihtpvsQEERLIFLDSIKSKS 813
Cdd:TIGR02168 879 -LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--------EVRIDNLQERLSEEY 949
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 814 KDS--VWEKEIEILIEENEDLKQQCIQLNEEIEkqrntfSFAEKNFEV--NYQELQEEYACLLKVKDDLEDSKNK 884
Cdd:TIGR02168 950 SLTleEAEALENKIEDDEEEARRRLKRLENKIK------ELGPVNLAAieEYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
173-790 |
7.07e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 7.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 173 ELNRELEEMRVTYGtegLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLR 252
Cdd:COG1196 217 ELKEELKELEAELL---LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 253 NSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKvensnKEEIQEKETIIE 332
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-----EAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 333 ELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDs 412
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 413 qfetdivQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMN 492
Cdd:COG1196 448 -------AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 493 VAINELNIKLQDTNSQKEKLKEELGLILEEK-CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 571
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIvVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 572 KAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRIN 651
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 652 IEKLKDNLGIHYKQQIDGLQNEMSQKIEtmqfekdnlitkQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEIL 731
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERE------------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 732 RQEEKEKGTLEQEVQELQLKTELLEKQMKEKE----------NDLQEKFAQLEAENSILKDEKKTLEDM 790
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEEA 817
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-968 |
1.04e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 78.19 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 155 THLEMMESELAGKQHEIEELNRELEEMRvtygteglqqlQEFEAAIKQRDgiitqltanlQQARREKDETMREFLELTEQ 234
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELE-----------KRLEEIEQLLE----------ELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 235 SQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKI--KVYEMEQ 312
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELedLRAELEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 313 DKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSE 392
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 393 EIKQLMGTVEELQKRNHKDSQfETDIVQRMEQETQRKLEQLRAELD-----EMYGQQIVQMKQELIRQ---HMAQMEEMK 464
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKE-EYDRVEKELSKLQRELAEAEAQARaseerVRGGRAVEEVLKASIQGvhgTVAQLGSVG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 465 TRHKGEMENALRSYSNITVNED------------QIKLMNVAINELNiKLQDTNSQKEKLKEE------LGLILEEK--- 523
Cdd:TIGR02169 535 ERYATAIEVAAGNRLNNVVVEDdavakeaiellkRRKAGRATFLPLN-KMRDERRDLSILSEDgvigfaVDLVEFDPkye 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 524 CALQRQLED--LVEELSFSREQIQRARQTIAEQEskLNEAHKSLS--TVEDLKAEIVSASESRKELELKHEaevtnykik 599
Cdd:TIGR02169 614 PAFKYVFGDtlVVEDIEAARRLMGKYRMVTLEGE--LFEKSGAMTggSRAPRGGILFSRSEPAELQRLRER--------- 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 600 LEMLEKEKNAVLDRMAEsQEAELERLRTQLLFSHEE--ELSKLKEDLEIEHRINIEKLKdnlgihykqQIDGLQNEMSQK 677
Cdd:TIGR02169 683 LEGLKRELSSLQSELRR-IENRLDELSQELSDASRKigEIEKEIEQLEQEEEKLKERLE---------ELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 678 IETMQFEKDNLITKQNQLILEISKLK----DLQQSLVNSKSEEMTLQINELQKEIeilRQEEKEKGTLEQEVQELQLKTE 753
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEealnDLEARLSHSRIPEIQAELSKLEEEV---SRIEARLREIEQKLNRLTLEKE 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 754 LLEKQMKEKENDLQEkfaqleaensiLKDEKKTLEDmlkihtpvSQEERLIFLDSIKSKSKDsvwekeieiLIEENEDLK 833
Cdd:TIGR02169 830 YLEKEIQELQEQRID-----------LKEQIKSIEK--------EIENLNGKKEELEEELEE---------LEAALRDLE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 834 QQCIQLNEEIEKQRNTFSFAEKnfevNYQELQEEYacllkvkddleDSKNKQELEYKSKLKALNEEL-HLQRINPTTVKM 912
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELER----KIEELEAQI-----------EKKRKRLSELKAKLEALEEELsEIEDPKGEDEEI 946
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 913 KSSVFDEDKtfVAETLE--------MGEV----------VEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQ 968
Cdd:TIGR02169 947 PEEELSLED--VQAELQrveeeiraLEPVnmlaiqeyeeVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
156-772 |
1.98e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 156 HLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQS 235
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE--------AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 236 QKLQIQFQQLQASETlrnsthsSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKK 315
Cdd:COG1196 305 ARLEERRRELEERLE-------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 316 VE--NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEE 393
Cdd:COG1196 378 EEelEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 394 IKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMK-----QELIRQHMAQMEEMKTRHK 468
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAAlllagLRGLAGAVAVLIGVEAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 469 GEMENALRSYSNITVNEDQIKLMNvAINELNIK-------LQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSR 541
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAA-AIEYLKAAkagratfLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 542 EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEvtnykIKLEMLEKEKNAVLDRMAESQEAE 621
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR-----RELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 622 LERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISK 701
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538387 702 LKDLQQSL--VNSKSEEmtlQINELQKEIEILrqeEKEKGTLEQEVQELQLKTELLEKQMKEKendLQEKFAQ 772
Cdd:COG1196 772 LEREIEALgpVNLLAIE---EYEELEERYDFL---SEQREDLEEARETLEEAIEEIDRETRER---FLETFDA 835
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2132-2753 |
3.23e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 3.23e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2132 KEQLQRDIQERNEEIEKLEFRVRELE--------QALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEK 2203
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELErqlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2204 EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 2279
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLd 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2280 -----FGKFAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEI 2349
Cdd:TIGR02168 334 elaeeLAELEEKLEELKEELESLEAELEELEAELeelesRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2350 EQLNEVIEKLQQELANIGQKTSMNA-HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 2428
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2429 ELFSLKRERESVEKI----------QSIPENSVNVAIDHLS---KDKPELEVVLTE--DALKSLENQTYFKSFE-----E 2488
Cdd:TIGR02168 490 RLDSLERLQENLEGFsegvkallknQSGLSGILGVLSELISvdeGYEAAIEAALGGrlQAVVVENLNAAKKAIAflkqnE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2489 NGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEkVAAALVSQIQLEAvqEYA 2568
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDD-LDNALELAKKLRP--GYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2569 KFCQDNQTISSE------PERTNIQNLNQLRE-DELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEK 2641
Cdd:TIGR02168 647 IVTLDGDLVRPGgvitggSAKTNSSILERRREiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2642 KLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTtelfhsNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLV 2721
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELE------AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670
....*....|....*....|....*....|..
gi 22538387 2722 KETNMTSLQKDLSQVRDHLAEAKEKLSILEKE 2753
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1911-2614 |
2.96e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 2.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1911 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV 1990
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1991 EQQL--LQETEKLMKEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLRQQNQALEKQLEKM 2065
Cdd:TIGR02168 329 ESKLdeLAEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2066 RKFLdeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEE 2145
Cdd:TIGR02168 406 EARL--ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2146 IEKLEFRVRELEqALLVSADTFQK-----VEDRKHFGA----------VEAKPELSLEVQLQAERDAIDRKEKEITNLE- 2209
Cdd:TIGR02168 484 LAQLQARLDSLE-RLQENLEGFSEgvkalLKNQSGLSGilgvlselisVDEGYEAAIEAALGGRLQAVVVENLNAAKKAi 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2210 EQLEQ-------FREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL--GLAIKESDAMSTQDQHVL- 2279
Cdd:TIGR02168 563 AFLKQnelgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLr 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2280 ----------------------FGKFAQIIQEKEVEIDQLNEQVTKLQQQLKIT--------TDNKVIEEKNELIRDLET 2329
Cdd:TIGR02168 643 pgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELekalaelrKELEELEEELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2330 QIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADslkhQLDVVIAEKLALEQQVETANEEM 2409
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE----ELAEAEAEIEELEAQIEQLKEEL 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2410 TF-------MKNVLKETNFKMNQLTQELFSLKRERESVEK-IQSIPEN---------SVNVAIDHLSKDKPELevvltED 2472
Cdd:TIGR02168 799 KAlrealdeLRAELTLLNEEAANLRERLESLERRIAATERrLEDLEEQieelsedieSLAAEIEELEELIEEL-----ES 873
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2473 ALKSLENQtyFKSFEEN---GKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQgqfeTEMLQKKIVNLQKIVEE 2549
Cdd:TIGR02168 874 ELEALLNE--RASLEEAlalLRSELEELSEELRELESKRSELRRELEELREKLAQLELR----LEGLEVRIDNLQERLSE 947
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 2550 KVAAALVSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLREDELgsdiSALTLRISELESQ 2614
Cdd:TIGR02168 948 EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEY----EELKERYDFLTAQ 1008
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
158-1010 |
3.47e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.23 E-value: 3.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 158 EMMESELAGKQHEIEELNRELEEmrvtygTEGLQQLQEFEAaikqRDGIItQLTANLQQARREKDeTMREFLELTEQSQ- 236
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 237 ----KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisflqekiKVYEMEQ 312
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGK------------KIYEHDS 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 313 DKKVENSNKEEIQEKetIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQE-----IKNMKLELTNSKQKE 387
Cdd:pfam15921 210 MSTMHFRSLGSAISK--ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDrieqlISEHEVEITGLTEKA 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 388 RQSSEEIKQLMGTVEELQKRnhkdSQFETDIVQRMEQETQRKLEQLRAELDE---MYGQQIVQMKQELIRQHmAQMEEMK 464
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQ----ARNQNSMYMRQLSDLESTVSQLRSELREakrMYEDKIEELEKQLVLAN-SELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 465 T------RHKGEMENALRSY-SNITVNEDQIKLMNvainELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEEL 537
Cdd:pfam15921 363 TerdqfsQESGNLDDQLQKLlADLHKREKELSLEK----EQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 538 SfSREQIQRARQTIAEQESklneaHKSLSTVEDLKAEIvsasESRKELELKHEAEVTNYKIKLEMLEKeknAVLDRMAES 617
Cdd:pfam15921 439 K-SECQGQMERQMAAIQGK-----NESLEKVSSLTAQL----ESTKEMLRKVVEELTAKKMTLESSER---TVSDLTASL 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 618 QEAElerlrtQLLFSHEEELSKLKEDLEIEhrinIEKLKdnlgiHYKQQIDGLQNemsqkietmqfekdnlitkqnqlil 697
Cdd:pfam15921 506 QEKE------RAIEATNAEITKLRSRVDLK----LQELQ-----HLKNEGDHLRN------------------------- 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 698 eisklkdlqqslVNSKSEEMTLQINELQKEIEILRQEEKEK----GTLEQEVQELQLKTELLEKQMKEKENDLQEKfaql 773
Cdd:pfam15921 546 ------------VQTECEALKLQMAEKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEF---- 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 774 eaenSILKDEKKTleDMLKIHTPVSQEErlifLDSIKSKSKDSvwekeieILIEENEDLKQQCIQLNEEIEKQRNTFSFA 853
Cdd:pfam15921 610 ----KILKDKKDA--KIRELEARVSDLE----LEKVKLVNAGS-------ERLRAVKDIKQERDQLLNEVKTSRNELNSL 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 854 EKNFEVNYQELQEEyacllkvKDDLEDSKNKQELEYKSKLKALNEELH-LQRINPTTVKMKSSVFDEDKTFVAETLEMG- 931
Cdd:pfam15921 673 SEDYEVLKRNFRNK-------SEEMETTTNKLKMQLKSAQSELEQTRNtLKSMEGSDGHAMKVAMGMQKQITAKRGQIDa 745
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 932 -----EVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEK-------EQVSLRCRELEI 999
Cdd:pfam15921 746 lqskiQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVanmevalDKASLQFAECQD 825
|
890
....*....|.
gi 22538387 1000 IINHNRAENVQ 1010
Cdd:pfam15921 826 IIQRQEQESVR 836
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1849-2419 |
6.39e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 6.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYA 1928
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQL--LQETEKLMKEKL 2006
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLeeLEEAEEALLERL 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2007 EVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDE--QAIDREHERDVFQ 2084
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEllEELAEAAARLLLL 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2085 QEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKlefRVRELEQALLVSA 2164
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA---AAIEYLKAAKAGR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2165 DTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFR----EELENKNEEVQQLHMQLEIQKKES 2240
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtlvaARLEAALRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2241 TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEK 2320
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2321 NELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGqKTSMNA----HSLSEEADSLKHQLDVVIAEKL 2396
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG-PVNLLAieeyEELEERYDFLSEQREDLEEARE 812
|
570 580
....*....|....*....|...
gi 22538387 2397 ALEQQVETANEEmtfMKNVLKET 2419
Cdd:COG1196 813 TLEEAIEEIDRE---TRERFLET 832
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
161-792 |
7.22e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.98 E-value: 7.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 161 ESELAGKQHEIEELNRELEEMR--VTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKL 238
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELEneLNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQL 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 239 QIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVEN 318
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 319 SNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLM 398
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 399 GTVEELQKrnhkdsqfETDIVQRMEQETQRKLEQLRAELDEMyGQQIVQMKQELIRQH--MAQMEEMKTRHKGEMENALR 476
Cdd:TIGR04523 391 SQINDLES--------KIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNNseIKDLTNQDSVKELIIKNLDN 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 477 SysnITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQES 556
Cdd:TIGR04523 462 T---RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 557 KLNeahkslstveDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKE----KNAVLDRMAESQEAELERLRTQLLfS 632
Cdd:TIGR04523 539 KIS----------DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKslkkKQEEKQELIDQKEKEKKDLIKEIE-E 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 633 HEEELSKLKEDLEIEHRINiEKLKDNlgihyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLqqslvns 712
Cdd:TIGR04523 608 KEKKISSLEKELEKAKKEN-EKLSSI-----IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTK------- 674
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 713 kseemtlqineLQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKqmkekendLQEKFAQLEAENSILKDEKKTLEDMLK 792
Cdd:TIGR04523 675 -----------IDDIIELMKDWLKELSLHYKKYITRMIRIKDLPK--------LEEKYKEIEKELKKLDEFSKELENIIK 735
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
195-988 |
1.27e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 71.16 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 195 EFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLrnsthsSTAADLLQAKQQILTHQ 274
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL------KEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 275 QQLEEQDHLLEDYQKKKEDFTMQISFLQEKikvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTT 354
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEK----EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 355 ADKLLGELQ--EQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQfETDIVQRMEQETQRKLEQ 432
Cdd:pfam02463 309 KVDDEEKLKesEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLE-QLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 433 LRAELDEMYGQQIVQMKQEliRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKL 512
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKE--AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 513 KEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAE 592
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 593 VTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEE----LSKLKEDLEIEHRINIEKLKDNLGIHYKQQID 668
Cdd:pfam02463 546 STAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLplksIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 669 GLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQEL 748
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 749 QLKTELLEKQMKEKENDLQEKFaQLEAENSILKDEKKTLEDMLKihtpvSQEERLIFLDSIKSKSKDSVWEKEIEILIEE 828
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRV-QEAQDKINEELKLLKQKIDEE-----EEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 829 NEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEyacllKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPT 908
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLE-----EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 909 TVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKE 988
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
321-884 |
2.78e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 321 KEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGT 400
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 401 VEELQKRNHKDSQfETDIVQRMEQETQRKLEQLRAELDEmygqqivqmKQELIRQHMAQMEEMKTRHKGEMENALRSYSN 480
Cdd:COG1196 325 LAELEEELEELEE-ELEELEEELEEAEEELEEAEAELAE---------AEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 481 ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNE 560
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 561 AHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNA--------VLDRMAESQEAELERLRTQLLFS 632
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAgavavligVEAAYEAALEAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 633 HEEELSKLKEDLEIE----------HRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKL 702
Cdd:COG1196 555 DDEVAAAAIEYLKAAkagratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 703 KDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKD 782
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 783 EKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENED-LKQQCIQLNEEIEkqrntfsfaekNFE-VN 860
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIE-----------ALGpVN 783
|
570 580 590
....*....|....*....|....*....|
gi 22538387 861 ------YQELQEEYACLLKVKDDLEDSKNK 884
Cdd:COG1196 784 llaieeYEELEERYDFLSEQREDLEEARET 813
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2059-2765 |
3.33e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 3.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2059 EKQLEKMRKFLDE-QAIDREHERDVfqqeiQKLEQQLKVVPRFQPISEhQTREVEQ--LANHLKEKTDKCSELLLSKEQL 2135
Cdd:TIGR02168 178 ERKLERTRENLDRlEDILNELERQL-----KSLERQAEKAERYKELKA-ELRELELalLVLRLEELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2136 QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgavEAKPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQ 2214
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY----ALANEISrLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2215 FREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQI------IQ 2288
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEE----LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIaslnneIE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2289 EKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVkRNREEEIEQLNEVIEKLQQELanigQ 2368
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQAL----D 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2369 KTSMNAHSLSEEADSLKhqldvviaeklALEQQVETANEEMTFMKNVLKETNFKMNQLtQELFSLKRE---------RES 2439
Cdd:TIGR02168 479 AAERELAQLQARLDSLE-----------RLQENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGyeaaieaalGGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2440 VEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALK---SLENQTYFKSFEENGKGSIINLETRLLQLESTVS------- 2509
Cdd:TIGR02168 547 LQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKgteIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvl 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2510 -----------------------------------------------AKDLELTQCYKQIKDMQEQ---GQFETEMLQKK 2539
Cdd:TIGR02168 627 vvddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKiaeLEKALAELRKE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2540 IVNLQKIVEEKVAAALVSQIQLEAVQE-YAKFCQDNQTISSEPERTNIQNLNQL-REDELGSDISALTLRISELESQVVE 2617
Cdd:TIGR02168 707 LEELEEELEQLRKELEELSRQISALRKdLARLEAEVEQLEERIAQLSKELTELEaEIEELEERLEEAEEELAEAEAEIEE 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2618 MHTSLilekEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKEKKRSPQDVEVLKTTTELFhsneesgffNELEALRAE 2697
Cdd:TIGR02168 787 LEAQI----EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE---------EQIEELSED 853
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 2698 SVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAKEKLsileKEDETEVQESKKAC 2765
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEEL----RELESKRSELRREL 917
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
309-792 |
1.08e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 309 EMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKEr 388
Cdd:TIGR04523 132 QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKI- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 389 qssEEIKQLMGTVEELQKRNhkdSQFETDIvqrmeQETQRKLEQLRAELDEMYgQQIVQMKQElirqhmaqmeemKTRHK 468
Cdd:TIGR04523 211 ---QKNKSLESQISELKKQN---NQLKDNI-----EKKQQEINEKTTEISNTQ-TQLNQLKDE------------QNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 469 GEMENalrSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEK-LKEELGLILEEKcalQRQLEDLVEELSFSREQIQRA 547
Cdd:TIGR04523 267 KQLSE---KQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQ---EKKLEEIQNQISQNNKIISQL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 548 RQTIAEQESKLNEahkslSTVEDlkaeivsaSESRKELELKHeaevtnykIKLEMLEKEKNAVLDRMaESQEAELERLRT 627
Cdd:TIGR04523 341 NEQISQLKKELTN-----SESEN--------SEKQRELEEKQ--------NEIEKLKKENQSYKQEI-KNLESQINDLES 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 628 QllFSHEEELSKLKEdleiehrINIEKLKDNlgihyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQ 707
Cdd:TIGR04523 399 K--IQNQEKLNQQKD-------EQIKKLQQE-----KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 708 SLvNSKSEEMTLQINELQKEIEILRQE----EKEKGTLEQEVQELQLKTELLEKQ---MKEKENDLQEKFAQLEAENSIL 780
Cdd:TIGR04523 465 SL-ETQLKVLSRSINKIKQNLEQKQKElkskEKELKKLNEEKKELEEKVKDLTKKissLKEKIEKLESEKKEKESKISDL 543
|
490
....*....|..
gi 22538387 781 KDEKKTLEDMLK 792
Cdd:TIGR04523 544 EDELNKDDFELK 555
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-565 |
3.86e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 166 GKQHEIEELNRELEEMrvtygtegLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQL 245
Cdd:TIGR02168 674 ERRREIEELEEKIEEL--------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 246 QAsetlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisfLQEKIkvyemEQDKKVENSNKEEIQ 325
Cdd:TIGR02168 746 EE-------RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-------LEAQI-----EQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 326 EKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQL----MGTV 401
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlnerASLE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 402 EELQKRNHKDSQFETDIvQRMEQEtQRKLEQLRAELDEMYGQqiVQMKQELIRQHMAQMEEMKT-RHKGEMENALRSYSN 480
Cdd:TIGR02168 887 EALALLRSELEELSEEL-RELESK-RSELRRELEELREKLAQ--LELRLEGLEVRIDNLQERLSeEYSLTLEEAEALENK 962
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 481 ITVN----EDQIKLMNVAINEL-NIKLqDTNSQKEKLKEELGLILEEKCALQR---QLEDLVEELsfSREQIQRARQTIA 552
Cdd:TIGR02168 963 IEDDeeeaRRRLKRLENKIKELgPVNL-AAIEEYEELKERYDFLTAQKEDLTEakeTLEEAIEEI--DREARERFKDTFD 1039
|
410
....*....|...
gi 22538387 553 EQESKLNEAHKSL 565
Cdd:TIGR02168 1040 QVNENFQRVFPKL 1052
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
260-645 |
8.39e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 8.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 260 AADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVE--NSNKEEIQEKETIIEELNTK 337
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriAQLSKELTELEAEIEELEER 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 338 IIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNhkdsqfeTD 417
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL-------ED 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 418 IVQRMEQETQRkLEQLRAELDEMygqqivqmkQELIRQHmaqmeemktrhkgemenalrsysnitvnEDQIKLMNVAINE 497
Cdd:TIGR02168 843 LEEQIEELSED-IESLAAEIEEL---------EELIEEL----------------------------ESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 498 LNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKslstvedLKAEIVs 577
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS-------LTLEEA- 956
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538387 578 asesrKELELKHEAEVTNYKIKLEMLEKEKNAV----LDRMAESQEAElERLRTqlLFSHEEELSKLKEDLE 645
Cdd:TIGR02168 957 -----EALENKIEDDEEEARRRLKRLENKIKELgpvnLAAIEEYEELK-ERYDF--LTAQKEDLTEAKETLE 1020
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
495-1000 |
1.06e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 495 INELNIKLQDTNSQKEKL---KEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 571
Cdd:PRK03918 209 INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 572 KAEIVSASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLDRM--AESQEAELERLRtQLLFSHEEELSKLKEDLEIEHR 649
Cdd:PRK03918 289 KEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERIkeLEEKEERLEELK-KKLKELEKRLEELEERHELYEE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 650 I-----NIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTL--QIN 722
Cdd:PRK03918 367 AkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCgrELT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 723 ELQKEiEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLqEKFAQLEAENSILkDEKKTLEDMLKIHTPVSQEER 802
Cdd:PRK03918 447 EEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVL-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 803 LIFLDSIKSKSkdsvwekeieilieenEDLKQQCIQLNEEIEKQrNTFSFAEKNFEVNYQELQEEYACLLK------VKD 876
Cdd:PRK03918 524 AEEYEKLKEKL----------------IKLKGEIKSLKKELEKL-EELKKKLAELEKKLDELEEELAELLKeleelgFES 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 877 DLEDSKNKQELE--YKSKLKALNEELHLQRINPTTVKMKSSVfDEDKTFVAETLEMGEVVEKDTTELM-----EKLEVTK 949
Cdd:PRK03918 587 VEELEERLKELEpfYNEYLELKDAEKELEREEKELKKLEEEL-DKAFEELAETEKRLEELRKELEELEkkyseEEYEELR 665
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 22538387 950 REKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEII 1000
Cdd:PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1614-2430 |
1.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1614 RQMERQREDQEQLQEEIKRLNRQLaqrSSIDNENLVSERERVLLEELEALKQLSLAGR-EKLCCELRNSSTQTqngNENQ 1692
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQL---KSLERQAEKAERYKELKAELRELELALLVLRlEELREELEELQEEL---KEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1693 GEVEEqtfKEKELDRKPEDVppEILSNERYALQKANNRLLKILLEVVKTTAAVEETIGRHVlgiLDRSSKSQSSASLIWR 1772
Cdd:TIGR02168 253 EELEE---LTAELQELEEKL--EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR---ERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1773 SEAEASVKSCVHEEHTRVTDEsipsysgSDMPRNDINMWSKVTEEGTELSQRLVRsgfagTEIDPENEelmlniSSRLQA 1852
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEK-------LEELKEELESLEAELEELEAELEELES-----RLEELEEQ------LETLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1853 AVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKcqEELRERLHEESRAREQLAVELSKAEGVIDGYADEKT 1932
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1933 LFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAG--PVEQQLLQETEKLMKEkLEVQC 2010
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilGVLSELISVDEGYEAA-IEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2011 QAEK---VRDDLQKQVKALEIDVEEQVSR--FIELEQEKNTELmdlrqqNQALEKQLEKMRKFLDeQAIDREHERDVFQQ 2085
Cdd:TIGR02168 544 GGRLqavVVENLNAAKKAIAFLKQNELGRvtFLPLDSIKGTEI------QGNDREILKNIEGFLG-VAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2086 EIQKLEQQLKVVPRFQPISE--HQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVS 2163
Cdd:TIGR02168 617 ALSYLLGGVLVVDDLDNALElaKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2164 ADTFQKVEDRKhfgaveakpeLSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTR 2243
Cdd:TIGR02168 697 EKALAELRKEL----------EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2244 LQELEQENKLFKDDMEKLGLAIKESDAMSTQdqhvlFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNEL 2323
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEE-----LKALREALDELRAELTLLNEEAANLRERLESLERR--IAATERR 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2324 IRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELaNIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVE 2403
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL-NERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
810 820
....*....|....*....|....*..
gi 22538387 2404 TANEEMTFMKNVLKETNFKMNQLTQEL 2430
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-789 |
1.67e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 230 ELTEQSQKLQIQ------FQQLQASETLRnsthsstaaDLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE 303
Cdd:COG1196 197 ELERQLEPLERQaekaerYRELKEELKEL---------EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 304 KIKVYEMEQDKKvensnKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNS 383
Cdd:COG1196 268 ELEELRLELEEL-----ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 384 KQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEmygqqivqmkqeliRQHMAQMEEM 463
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--------------AAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 464 KTRHKGEMENAlrsysnitvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELglilEEKCALQRQLEDLVEELSFSREQ 543
Cdd:COG1196 409 EEALLERLERL----------EEELEELEEALAELEEEEEEEEEALEEAAEEE----AELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 544 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKEL----------------ELKHEAEVTNYKIKLEM----- 602
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLaglrglagavavligvEAAYEAALEAALAAALQnivve 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 603 ----------LEKEKNA------VLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRI-------NIEKLKDNL 659
Cdd:COG1196 555 ddevaaaaieYLKAAKAgratflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLgdtllgrTLVAARLEA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 660 GIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKG 739
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 22538387 740 TLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLED 789
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1850-2441 |
2.71e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 2.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1850 LQAAVEKLLEAISETSSQLEHAkvtqtelmRESFRQKQEATESLKCQEELRERLHEESRAR-EQLAVELSKAEGVIDGYA 1928
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQIL--------RERLANLERQLEELEAQLEELESKLDELAEElAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMK-EKLE 2007
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2008 VQCQAEKVRDDLQKQVKALEiDVEEQVSRFIELEQEKNTELMDLRQQNQ-------ALEKQLEKMRKFlDEQAIDREHER 2080
Cdd:TIGR02168 438 LQAELEELEEELEELQEELE-RLEEALEELREELEEAEQALDAAERELAqlqarldSLERLQENLEGF-SEGVKALLKNQ 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2081 DVFQQEIQKLEQQLKVVPRFQ----------------PISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNE 2144
Cdd:TIGR02168 516 SGLSGILGVLSELISVDEGYEaaieaalggrlqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILK 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2145 EIEK-----------------------------------LEFRVRELEQALLVSADTFQ--------KVEDRKHFGAVEA 2181
Cdd:TIGR02168 596 NIEGflgvakdlvkfdpklrkalsyllggvlvvddldnaLELAKKLRPGYRIVTLDGDLvrpggvitGGSAKTNSSILER 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2182 KPELS-LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEK 2260
Cdd:TIGR02168 676 RREIEeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD----LARLEAEVEQLEERIAQ 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2261 LGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTD-----NKVIEEKNELIRDLETQIECL- 2334
Cdd:TIGR02168 752 LSKELTELEAEIEELEERL-EEAEEELAEAEAEIEELEAQIEQLKEELKALREaldelRAELTLLNEEAANLRERLESLe 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2335 --MSDQECVKRNREEEIEQLNEVIEKLQQELAnigqktsmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 2412
Cdd:TIGR02168 831 rrIAATERRLEDLEEQIEELSEDIESLAAEIE-----------ELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
650 660
....*....|....*....|....*....
gi 22538387 2413 KNVLKETNFKMNQLTQELFSLKRERESVE 2441
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLE 928
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3066-3365 |
5.82e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.65 E-value: 5.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3066 QRIQEQGVEYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKD 3145
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3146 RATELQEQLSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSREL----- 3220
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAeaela 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3221 -QWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQ 3299
Cdd:COG1196 376 eAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 3300 VLLESEKVRIREMSSTLDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRIVELLNE 3365
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-----LLLLLEAEADYEGFLEGVKAALLL 516
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
170-884 |
5.98e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.85 E-value: 5.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 170 EIEELNRELEEMRVTYGTEGLQQLQEFEAAiKQRDGIITQLTANLQQARR----EKDETMREFLELTEQSQKLQIQFQQL 245
Cdd:PTZ00121 1231 KAEEAKKDAEEAKKAEEERNNEEIRKFEEA-RMAHFARRQAAIKAEEARKadelKKAEEKKKADEAKKAEEKKKADEAKK 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 246 QASETLRNSTHSSTAAdllQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEM--EQDKKVENSNKEE 323
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAE---EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKkkEEAKKKADAAKKK 1386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 324 IQEKETIiEELNTKIIEEEKKTLELKdKLTTADKLLGELQEQI--VQKNQEIKNMKLELTNSKQKERQSSEEIK--QLMG 399
Cdd:PTZ00121 1387 AEEKKKA-DEAKKKAEEDKKKADELK-KAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKaeEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 400 TVEELQKRNHKDSQFETdivQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQhmaqMEEMKTRHKGEMENALRSYS 479
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEE---AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK----AEEAKKADEAKKAEEAKKAD 1537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 480 NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEElglilEEKCALQRQLEDLveelsfsrEQIQRARqtiAEQESKLN 559
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE-----EDKNMALRKAEEA--------KKAEEAR---IEEVMKLY 1601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 560 EAHKSLSTVEDLKAE--IVSASESRKELELKHEAEVTNYKI-----KLEMLEKEKNAVLDRMAE-SQEAELERLRTQLLF 631
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEeaKIKAEELKKAEEEKKKVEQLKKKEaeekkKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAK 1681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 632 SHEEELSKLKEDL--EIEHRINIEKLKDNLGIHYK--QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQ 707
Cdd:PTZ00121 1682 KAEEDEKKAAEALkkEAEEAKKAEELKKKEAEEKKkaEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 708 --SLVNSKSEEMTLQINELQKEiEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAENSILKD 782
Cdd:PTZ00121 1762 lkKEEEKKAEEIRKEKEAVIEE-ELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNlviNDSKEMEDSAIKEVADSKN 1840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 783 EKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCiqlNEEIEKQRNTFSFAEKNFEVNYQ 862
Cdd:PTZ00121 1841 MQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKID---KDDIEREIPNNNMAGKNNDIIDD 1917
|
730 740
....*....|....*....|...
gi 22538387 863 EL-QEEYacllkVKDDLEDSKNK 884
Cdd:PTZ00121 1918 KLdKDEY-----IKRDAEETREE 1935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
425-775 |
6.48e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 6.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 425 ETQRKLEQLRAELDEMYGQ-QIVQMKQELIRQHMAQMEemKTRHKGEMENALRSysnitvnedqiKLMNVAINELNIKLQ 503
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENiERLDLIIDEKRQQLERLR--REREKAERYQALLK-----------EKREYEGYELLKEKE 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 504 DTNSQKEKLKEELGLILEEKCALQRQLEDLVEELsfsrEQIQRARQTIAEQESKL--NEAHKSLSTVEDLKAEIVSA--S 579
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRL----EEIEQLLEELNKKIKDLgeEEQLRVKEKIGELEAEIASLerS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 580 ESRKELELKH-EAEVTNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLfSHEEELSKLK---EDLEIEHRINIEKL 655
Cdd:TIGR02169 310 IAEKERELEDaEERLAKLEAEIDKLLAEIEE-LEREIEEERKRRDKLTEEYA-ELKEELEDLRaelEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 656 KDnlgihYKQQIDGLQNEMsqkiETMQFEKDNLITKQNQLILEIS----KLKDLQQSLVNSKSEEMTLQInELQKEIEIL 731
Cdd:TIGR02169 388 KD-----YREKLEKLKREI----NELKRELDRLQEELQRLSEELAdlnaAIAGIEAKINELEEEKEDKAL-EIKKQEWKL 457
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 22538387 732 RQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEA 775
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2030-2402 |
1.12e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2030 VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLkvvprfqpisehqtr 2109
Cdd:TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL--------------- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2110 eveqlanhlkektdkcSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKVEDRKHFGAVEAKPEL-SLE 2188
Cdd:TIGR02169 247 ----------------ASLEEELEKLTEEISELEKRLEEIEQLLEELN----------KKIKDLGEEEQLRVKEKIgELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2189 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKES---TTRLQELEQENKLFKDDMEKLGLAI 2265
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2266 KESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEK-NELIRDLETQIECLmsdqecvkR 2343
Cdd:TIGR02169 381 AETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEELaDLNAAIAGIEAKiNELEEEKEDKALEI--------K 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 2344 NREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQV 2402
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYD----RVEKELSKLQRELAEAEAQARASEERV 506
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
151-810 |
1.21e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.52 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 151 QDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYgtEGLQQLQEFEAAIKQRDGIITQLTANLQQAR---------REK 221
Cdd:TIGR00618 208 LCTPCMPDTYHERKQVLEKELKHLREALQQTQQSH--AYLTQKREAQEEQLKKQQLLKQLRARIEELRaqeavleetQER 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 222 DETMREFLELTEQS-------QKLQIQFQQLQASETLRNSTHSSTAAdlLQAKQQILTHQQQLEEQDHLLEDYQKKKEDf 294
Cdd:TIGR00618 286 INRARKAAPLAAHIkavtqieQQAQRIHTELQSKMRSRAKLLMKRAA--HVKQQSSIEEQRRLLQTLHSQEIHIRDAHE- 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 295 tMQISFLQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTL-------ELKDKLTTADKLLGELQEQIV 367
Cdd:TIGR00618 363 -VATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDtrtsafrDLQGQLAHAKKQQELQQRYAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 368 QKNQEIKNMKLELTNSK---QKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMY--- 441
Cdd:TIGR00618 442 LCAAAITCTAQCEKLEKihlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQdid 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 442 --GQQIVQMKQELIRQHMAQMEEMKTRHKGEME-NALRSYSN-ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELG 517
Cdd:TIGR00618 522 npGPLTRRMQRGEQTYAQLETSEEDVYHQLTSErKQRASLKEqMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 518 LILEEK----CALQRQLEDLVEELSfsrEQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEV 593
Cdd:TIGR00618 602 KLSEAEdmlaCEQHALLRKLQPEQD---LQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 594 TNYKIKLEMLEKEKNAVLDRMAESQEAelerlrTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHyKQQIDGLQNE 673
Cdd:TIGR00618 679 QLALQKMQSEKEQLTYWKEMLAQCQTL------LRELETHIEEYDREFNEIENASSSLGSDLAAREDAL-NQSLKELMHQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 674 MSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTE 753
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEE 831
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 22538387 754 LLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTpvsQEERLIFLDSIK 810
Cdd:TIGR00618 832 QFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQ---LSDKLNGINQIK 885
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2042-2271 |
1.79e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2042 QEKNTELMDLRQQNQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEQQLKVvprfqpisehQTREVEQLANHLKEK 2121
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA----------LARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2122 TDKCSELLLSKEQLQRDIQERNEEIEKlefRVRELEQ-------ALLVSADTFQKVEDRKH-FGAVEAkpelslevQLQA 2193
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAE---LLRALYRlgrqpplALLLSPEDFLDAVRRLQyLKYLAP--------ARRE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 2194 ERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAM 2271
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
267-1075 |
1.80e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 61.22 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 267 KQQILTHQQQLEEQDHLLEDYQKKKEDFtmqISFLQEKIKVYEMEQDKKVENSNKEEIQEK-ETIIEELNTK--IIEEEK 343
Cdd:TIGR01612 1117 KDDIKNLDQKIDHHIKALEEIKKKSENY---IDEIKAQINDLEDVADKAISNDDPEEIEKKiENIVTKIDKKknIYDEIK 1193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 344 KTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKerQSSEEIKQLMGTVEELQKRNHKDSQFETDIvqRME 423
Cdd:TIGR01612 1194 KLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKK--KSEHMIKAMEAYIEDLDEIKEKSPEIENEM--GIE 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 424 QETQRKLEQLRAELDEMYGQQIVQMKQEL----IRQHMAQMEEMKTRHK--GEMENALRSY--SNITVNEDQIKLMNVAI 495
Cdd:TIGR01612 1270 MDIKAEMETFNISHDDDKDHHIISKKHDEnisdIREKSLKIIEDFSEESdiNDIKKELQKNllDAQKHNSDINLYLNEIA 1349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 496 NELNI-KLQDTNSQKEKLKEELGLILEEKcalqrqlEDLVEELSFSREQIQRARQTIAEQESKlneaHKSLSTVE--DLK 572
Cdd:TIGR01612 1350 NIYNIlKLNKIKKIIDEVKEYTKEIEENN-------KNIKDELDKSEKLIKKIKDDINLEECK----SKIESTLDdkDID 1418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 573 AEIVSASESRKELeLKHEAEVTNYKIKLEmlEKEKNAVLD----RMAESQEAELERLRTQLLFS-HEEELSKLKEDLEIE 647
Cdd:TIGR01612 1419 ECIKKIKELKNHI-LSEESNIDTYFKNAD--ENNENVLLLfkniEMADNKSQHILKIKKDNATNdHDFNINELKEHIDKS 1495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 648 HRINIEKLKDNLGI--------HYKQQIDGLQNEMSQKIETMQFEKDNliTKQNQLILEISKLKDlQQSLVNSKSEEmtl 719
Cdd:TIGR01612 1496 KGCKDEADKNAKAIeknkelfeQYKKDVTELLNKYSALAIKNKFAKTK--KDSEIIIKEIKDAHK-KFILEAEKSEQ--- 1569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 720 QINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQM------KEKENDLQEKFAQLEAENSILKDEKKTLEDMLKI 793
Cdd:TIGR01612 1570 KIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFlkisdiKKKINDCLKETESIEKKISSFSIDSQDTELKENG 1649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 794 HTPVSQEErliFLDSIKSKSKDsvwekeieilieeNEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYAcllk 873
Cdd:TIGR01612 1650 DNLNSLQE---FLESLKDQKKN-------------IEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIA---- 1709
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 874 vkddledSKNKQELEYKSKLkalneelhlqrINPTTVKMKSSVFDEDktfvAETLEMGEVVEKDTTELMEKLEvtkrEKL 953
Cdd:TIGR01612 1710 -------IANKEEIESIKEL-----------IEPTIENLISSFNTND----LEGIDPNEKLEEYNTEIGDIYE----EFI 1763
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 954 ELSQRLSDLSEQLKQ--------KHGEISFLNEEVKSLKQEKEQVS----LRCRELEIIINHnraenvqscdtqVSSLLD 1021
Cdd:TIGR01612 1764 ELYNIIAGCLETVSKepitydeiKNTRINAQNEFLKIIEIEKKSKSylddIEAKEFDRIINH------------FKKKLD 1831
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 1022 GV-VTMTSRgaegsVSKVNKSFGEESKimvedkvSFENMtvgEESKQEQLILDHL 1075
Cdd:TIGR01612 1832 HVnDKFTKE-----YSKINEGFDDISK-------SIENV---KNSTDENLLFDIL 1871
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
553-886 |
3.53e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 553 EQESKLNEAHKSLSTVEDLKAEIvsasesRKELE-LKHEAEVTN-YKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL- 629
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNEL------ERQLKsLERQAEKAErYKELKAELRELELALLVLRLEELREELEELQEELk 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 630 -----LFSHEEELSKLKEDLEiEHRINIEKLKDNLGIHYK--QQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEI--- 699
Cdd:TIGR02168 250 eaeeeLEELTAELQELEEKLE-ELRLEVSELEEEIEELQKelYALANEISRLEQQKQILRERLANLERQLEELEAQLeel 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 700 -SKLKDLQQSLvnsksEEMTLQINELQKEIEILRQEEKEKgtlEQEVQELQLKTELLEKQM---KEKENDLQEKFAQLEA 775
Cdd:TIGR02168 329 eSKLDELAEEL-----AELEEKLEELKEELESLEAELEEL---EAELEELESRLEELEEQLetlRSKVAQLELQIASLNN 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 776 ENSILKDEKKTLEDMLKIhtpvSQEERLIFLDSIKSKSKDSVwEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEK 855
Cdd:TIGR02168 401 EIERLEARLERLEDRRER----LQQEIEELLKKLEEAELKEL-QAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
330 340 350
....*....|....*....|....*....|.
gi 22538387 856 NFEVNYQELQEEYACLLKVKDDLEDSKNKQE 886
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1908-2443 |
3.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 3.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1908 RAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLqeleaeqQQIQEERELLSRQKEAMKAEA 1987
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL-------EEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1988 GPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRK 2067
Cdd:COG1196 305 ARLEERRRELEERLEELEEELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2068 FLDEQAiDREHERDVFQQEIQKLEQQLKVVPRFQpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIE 2147
Cdd:COG1196 384 LAEELL-EALRAAAELAAQLEELEEAEEALLERL---ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2148 KLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEI--------------------TN 2207
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2208 LEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQII 2287
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2288 QEKEVEIDQ-------LNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQ 2360
Cdd:COG1196 620 DTLLGRTLVaarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2361 QELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESV 2440
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
...
gi 22538387 2441 EKI 2443
Cdd:COG1196 780 GPV 782
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
157-660 |
8.23e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 8.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 157 LEMMESELAGKQHEIEELNRELEEMRVTYGT------------EGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDET 224
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKlekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 225 MREFLELTEQSQKLQIQFQQLQASETLRNSTH------SSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQI 298
Cdd:PRK03918 275 IEELEEKVKELKELKEKAEEYIKLSEFYEEYLdelreiEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 299 SFLQEKIKVYEMEQDKKVensNKEEIQEKETI--IEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNM 376
Cdd:PRK03918 355 EELEERHELYEEAKAKKE---ELERLKKRLTGltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 377 K----------LELTNSKQKE--RQSSEEIKQLMGTVEELQKRNHKDSQFETDIvqRMEQETQRKLEQLRAELDemygqQ 444
Cdd:PRK03918 432 KkakgkcpvcgRELTEEHRKEllEEYTAELKRIEKELKEIEEKERKLRKELREL--EKVLKKESELIKLKELAE-----Q 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 445 IVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKlmnvainelniKLQDTNSQKEKLKEELGLILEEKC 524
Cdd:PRK03918 505 LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-----------KLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 525 ALQRQLedlvEELSFsrEQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELElKHEAEVTNYKIKLEMLE 604
Cdd:PRK03918 574 ELLKEL----EELGF--ESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELD-KAFEELAETEKRLEELR 646
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 605 KEKNAVLDRMAESQEAELERLRTQL---LFSHEEELSKLKEDLEiEHRINIEKLKDNLG 660
Cdd:PRK03918 647 KELEELEKKYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
337-1164 |
1.09e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.44 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 337 KIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFet 416
Cdd:pfam02463 156 LEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLK-- 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 417 dIVQRMEQETQRKLEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAIN 496
Cdd:pfam02463 234 -LNEERIDLLQELLRDEQEEIESS--KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 497 ELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIV 576
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 577 SASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEE----------ELSKLKEDLEI 646
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEkeelekqelkLLKDELELKKS 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 647 EHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLI-----TKQNQLILEISKLKDLQQSLVNSKSEEMTLQI 721
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLalikdGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 722 NELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDE---------KKTLEDMLK 792
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATleadeddkrAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 793 IHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNE------EIEKQRNTFSFAEKNFEVNYQELQE 866
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQelqekaESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 867 EYACLLKVKDDLEDSKnKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLE 946
Cdd:pfam02463 711 ELKKLKLEAEELLADR-VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVE 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 947 VTKREKLeLSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGVVTM 1026
Cdd:pfam02463 790 EEKEEKL-KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1027 TSRGAEGSV----------SKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQ 1096
Cdd:pfam02463 869 LQELLLKEEeleeqklkdeLESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEK 948
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 1097 KELNVLKSEQNDLRLQMEAQRICLSLVYSTHVDQVREymENEKDKALCSLKEELIFAQEEKIKELQKI 1164
Cdd:pfam02463 949 EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEE--KEERYNKDELEKERLEEEKKKLIRAIIEE 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2132-2488 |
1.45e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2132 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKhfgaveAKPELSLEVQLQAERDAIDRKEKEITNLEEQ 2211
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQL-------ERLRRER------EKAERYQALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2212 LEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKfaqiIQEKE 2291
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS----IAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2292 VEIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQELANIGQK-- 2369
Cdd:TIGR02169 315 RELEDAEERLAKLEAE---------IDKLLAEIEELEREIE----EERKRRDKLTEEYAELKEELEDLRAELEEVDKEfa 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2370 TSMNAHS--------LSEEADSLKHQLDVVIAEKLALEQQVETANEEM-------TFMKNVLKETNFKMNQLTQELFSLK 2434
Cdd:TIGR02169 382 ETRDELKdyreklekLKREINELKRELDRLQEELQRLSEELADLNAAIagieakiNELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 22538387 2435 RERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEdALKSLENQTYFKSFEE 2488
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-ARASEERVRGGRAVEE 514
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
270-1365 |
1.73e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 57.75 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 270 ILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE---KIKVYemeqdKKVENSNKEE----------IQEKETIIEELNT 336
Cdd:TIGR01612 498 ILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDqniKAKLY-----KEIEAGLKESyelaknwkklIHEIKKELEEENE 572
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 337 KIIEEEK-------KTLELKDKLTTADKLLGELQEQ---IVQKNQEIK---NMKLELTN--------SKQKERQSSEEIK 395
Cdd:TIGR01612 573 DSIHLEKeikdlfdKYLEIDDEIIYINKLKLELKEKiknISDKNEYIKkaiDLKKIIENnnayidelAKISPYQVPEHLK 652
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 396 ---QLMGTVE-ELQK---------RNHKDSQFETDIVQRMEQETqrKLEQLRAELDEMYgQQIVQMKQELIRQHMAQME- 461
Cdd:TIGR01612 653 nkdKIYSTIKsELSKiyeddidalYNELSSIVKENAIDNTEDKA--KLDDLKSKIDKEY-DKIQNMETATVELHLSNIEn 729
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 462 ----------EMKTRHKGEMENALrsysNITVNEDQIKLmnvaiNELNIKLQDTNSQKEKLKEELGLILEEKCALQRQ-- 529
Cdd:TIGR01612 730 kknelldiivEIKKHIHGEINKDL----NKILEDFKNKE-----KELSNKINDYAKEKDELNKYKSKISEIKNHYNDQin 800
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 530 LEDLVEELsfSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKL-EMLEKEKN 608
Cdd:TIGR01612 801 IDNIKDED--AKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFaELTNKIKA 878
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 609 AVLDRMAESQEAEL---ERLRTQLLFSHEEELSKLKEDLEIEHRINI-EKLKDNL-GIHYKQQIdgLQNEMSQKIETMQf 683
Cdd:TIGR01612 879 EISDDKLNDYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LKEILNKNIDTIK- 955
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 684 eKDNLITK------QNQLILEISKL----KDLQQSLVNSKSEEMTLQINELQKEI-----EILRQEEKEKgtlEQEVQEL 748
Cdd:TIGR01612 956 -ESNLIEKsykdkfDNTLIDKINELdkafKDASLNDYEAKNNELIKYFNDLKANLgknkeNMLYHQFDEK---EKATNDI 1031
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 749 QLKTELLEKQMKEKENDLQEKFAQL--EAENSILKD-EKKTLEDMLKIHTPVSQeerlifLDSIKSKSK----DSVWEKE 821
Cdd:TIGR01612 1032 EQKIEDANKNIPNIEIAIHTSIYNIidEIEKEIGKNiELLNKEILEEAEINITN------FNEIKEKLKhynfDDFGKEE 1105
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 822 IEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELEYKsklkalneelh 901
Cdd:TIGR01612 1106 NIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKK----------- 1174
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 902 LQRInPTTVKMKSSVFDEDKTFVAETLEmgevVEKDTTElmekLEVTKREKLELSQRLSDL-----SEQLKQKHGEISFL 976
Cdd:TIGR01612 1175 IENI-VTKIDKKKNIYDEIKKLLNEIAE----IEKDKTS----LEEVKGINLSYGKNLGKLflekiDEEKKKSEHMIKAM 1245
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 977 NEEVKSLKQEKEQVSLRCRELEIIINHNRAENVqscdTQVSSLLDGVVTMTSRGAEGSVS-------KVNKSFGEESKIM 1049
Cdd:TIGR01612 1246 EAYIEDLDEIKEKSPEIENEMGIEMDIKAEMET----FNISHDDDKDHHIISKKHDENISdirekslKIIEDFSEESDIN 1321
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1050 VEDKVSFENMTVGEESKQE--------------------QLILDHLPSVTKEssLRATQPSENDKLQKELNVLKSEQNDL 1109
Cdd:TIGR01612 1322 DIKKELQKNLLDAQKHNSDinlylneianiynilklnkiKKIIDEVKEYTKE--IEENNKNIKDELDKSEKLIKKIKDDI 1399
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1110 RLQMeaqriCLSLVYSTHVDQ-VREYMENEKDKALCSLKEE------------------LIFAQEE----------KIKE 1160
Cdd:TIGR01612 1400 NLEE-----CKSKIESTLDDKdIDECIKKIKELKNHILSEEsnidtyfknadennenvlLLFKNIEmadnksqhilKIKK 1474
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1161 LQKIHQLELQTMKTQETGDEGKPLHLLIGKLQKAVSEECSYFLQ---TLCSVLGEYYTPALKCEVnAEDKENSGDYISEN 1237
Cdd:TIGR01612 1475 DNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQykkDVTELLNKYSALAIKNKF-AKTKKDSEIIIKEI 1553
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1238 ED----------------PELQDYRYEVQDFQENMHTLLNKVTEEYNKLLVLQTRLSKIWGQQTDGMKLEFGEENLPKEE 1301
Cdd:TIGR01612 1554 KDahkkfileaekseqkiKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKI 1633
|
1210 1220 1230 1240 1250 1260
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 1302 TEFlSIHSQMTNLEDIDVNHKSKLSSLQDL--EKTKLEEQVQELESL---ISSLQQQLKETEQNYEAEI 1365
Cdd:TIGR01612 1634 SSF-SIDSQDTELKENGDNLNSLQEFLESLkdQKKNIEDKKKELDELdseIEKIEIDVDQHKKNYEIGI 1701
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3074-3446 |
3.39e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 3.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3074 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQELLEYNIQQKQSQMLEMQVElssMKDRATELQEQ 3153
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE---EAKKADEAKKK 1452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3154 lSSEKMVVAELKSELAQTKLELETTLKAQH-KHLKELEAFRLEVKDKTDEVHllndTLASEQKKSRELQWALEKEKAKLG 3232
Cdd:PTZ00121 1453 -AEEAKKAEEAKKKAEEAKKADEAKKKAEEaKKADEAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEAKKADEA 1527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3233 RSEErDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSE-----EQGRNLELQVLLESEKV 3307
Cdd:PTZ00121 1528 KKAE-EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEeakkaEEARIEEVMKLYEEEKK 1606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3308 RIREMSSTLDRERELHAQLQSSDGTGQSrpplpsedlLKELQKQLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVH 3387
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKK---------VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 3388 RKTLQTEQEAN--TEGQKKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 3446
Cdd:PTZ00121 1678 EEAKKAEEDEKkaAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3109-3440 |
3.49e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3109 KREQESEKpSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLssekmvvAELKSELAQTKLELETTLKAQHKHLKE 3188
Cdd:TIGR02168 218 LKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAEL-------QELEEKLEELRLEVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3189 LEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEE---RDKEELEDLKFSLESQKQRNLQLNLLLEQ 3265
Cdd:TIGR02168 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3266 QKQLLNESQQKIESQRMLYdAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQlqssdgtgqsrppLPSEDLL 3345
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKV-AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-------------KLEEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3346 KELQKQLEEKHSRIVELLNETEkykldslQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSkVEDLQRQLEEKRQQ 3425
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELE-------RLEEALEELREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG 507
|
330
....*....|....*
gi 22538387 3426 VYKLDLEGQRLQGIM 3440
Cdd:TIGR02168 508 VKALLKNQSGLSGIL 522
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
373-900 |
4.28e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.23 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 373 IKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRnhkdsqfetdiVQRMEqETQRKLEQLRAELDEMYGQqiVQMKQEL 452
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKE-----------VKELE-ELKEEIEELEKELESLEGS--KRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 453 IRQHMAQMEEMKTRHKGEMENALRSysnitvneDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLED 532
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKEL--------KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 533 LvEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELEL-KHEAEVTNYKIKLEMLEKEKNAVL 611
Cdd:PRK03918 333 L-EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPeKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 612 DRMAEsQEAELERLRTQLlfsheEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITK 691
Cdd:PRK03918 412 ARIGE-LKKEIKELKKAI-----EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 692 QNQLILE--ISKLKDLQQSLVNSKS-----------------EEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKT 752
Cdd:PRK03918 486 EKVLKKEseLIKLKELAEQLKELEEklkkynleelekkaeeyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 753 ELLEKQMKEKENDLQEK-FAQLEAENSILKDEKKTLEDMLKIHTPVSQ-EERLIFLDSIKSKSKDSvwekeieilIEENE 830
Cdd:PRK03918 566 DELEEELAELLKELEELgFESVEELEERLKELEPFYNEYLELKDAEKElEREEKELKKLEEELDKA---------FEELA 636
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 831 DLKQQCIQLNEEIEKQRNTFSFAE-KNFEVNYQELQEEYACLLKVKDDLEDSKNkqelEYKSKLKALNEEL 900
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEELEKRRE----EIKKTLEKLKEEL 703
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-949 |
5.33e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 5.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 161 ESELAGKQHEIEELNRELEEMRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI 240
Cdd:PTZ00121 1089 ADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEE 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 241 --QFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDftmqisflqekikvYEMEQDKKVEN 318
Cdd:PTZ00121 1169 arKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDA--------------KKAEAVKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 319 SNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKnmkleltnsKQKERQSSEEIKQlm 398
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK---------KADEAKKAEEKKK-- 1303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 399 gtVEELQKRnhKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQ-QIVQMKQELIRQHMAQMEEMKTRHKGEMENALRS 477
Cdd:PTZ00121 1304 --ADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 478 YSNITVNEDQIKlmnvAINELNIKLQDTNSQKEKLKEELGlilEEKCAlqrqledlvEELSFSREQIQRARQTI--AEQE 555
Cdd:PTZ00121 1380 ADAAKKKAEEKK----KADEAKKKAEEDKKKADELKKAAA---AKKKA---------DEAKKKAEEKKKADEAKkkAEEA 1443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 556 SKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEvtnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshEE 635
Cdd:PTZ00121 1444 KKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----AE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 636 ELSKLKEDLEIEHRINIEKLKdnlgihykqqidglQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSE 715
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 716 EmtlQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHT 795
Cdd:PTZ00121 1574 E---DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 796 PVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKvK 875
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEN-K 1729
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 876 DDLEDSKNKQELEYKSKLKALNEELHLQRInpTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTK 949
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKI--AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3155-3446 |
5.55e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 5.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3155 SSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRS 3234
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3235 EER------DKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGR----NLELQVLLES 3304
Cdd:TIGR02168 746 EERiaqlskELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEltllNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3305 EKVRIREMSSTLDRERELHAQLQSSDGTGQSrpplpSEDLLKELQKQLEEKHSRIVELLNEtekykldslqtRQQMEKDR 3384
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIES-----LAAEIEELEELIEELESELEALLNE-----------RASLEEAL 889
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538387 3385 QVHRKTLQTEQEantegqkKMHELQSKVEDLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQKQ 3446
Cdd:TIGR02168 890 ALLRSELEELSE-------ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
311-793 |
5.74e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 5.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 311 EQDKKVENSNKEEIQEKETiiEELNTKIiEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLElTNSKQKERQS 390
Cdd:PTZ00121 1454 EEAKKAEEAKKKAEEAKKA--DEAKKKA-EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKADEAKK 1529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 391 SEEIKQlmgtVEELQKRNHKDSQFETDIVQRMEQ-ETQRKLEQLRAELDEMYG--------QQIVQMKQELIRQHMAQME 461
Cdd:PTZ00121 1530 AEEAKK----ADEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKAEEDKNMalrkaeeaKKAEEARIEEVMKLYEEEK 1605
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 462 EMKTRHKGEMENALRSYSNITVNEDQIKlmnvAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLED---LVEELS 538
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdkkKAEEAK 1681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 539 FSREQIQRARQTIA--EQESKLNEAHKSLSTVEDLKAEIVSASESRKEL---ELKHEAEVTNYKIKLEMLEKEKNAVLDR 613
Cdd:PTZ00121 1682 KAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 614 MAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQN 693
Cdd:PTZ00121 1762 LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM 1841
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 694 QliLEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILR--QEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLqeKFA 771
Cdd:PTZ00121 1842 Q--LEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEddEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDI--IDD 1917
|
490 500
....*....|....*....|..
gi 22538387 772 QLEAENSILKDEKKTLEDMLKI 793
Cdd:PTZ00121 1918 KLDKDEYIKRDAEETREEIIKI 1939
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1908-2409 |
6.53e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.69 E-value: 6.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1908 RAREQLAVeLSKAEGVIDGYADEKTLFERQIQEKTDI-IDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAE 1986
Cdd:COG4913 246 DAREQIEL-LEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1987 AGPVEQQL-------LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALE 2059
Cdd:COG4913 325 LDELEAQIrgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2060 KQLEKmrkfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQpiseHQTRevEQLANHLKEKTDKC---SELLlskeqlq 2136
Cdd:COG4913 405 EALAE----AEAALRDLRRELRELEAEIASLERRKSNIPARL----LALR--DALAEALGLDEAELpfvGELI------- 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2137 rDIQERNEE----IEKLefrVRELEQALLVSADTFQKVE---DRKHFGAV----EAKPELSLEVQLQAERDAIDRK---- 2201
Cdd:COG4913 468 -EVRPEEERwrgaIERV---LGGFALTLLVPPEHYAAALrwvNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKldfk 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2202 EKEITN-LEEQLEQFR--------EELEN------------KNEEVQQLHMQLEIQKK-----ESTTRLQELEQENKLFK 2255
Cdd:COG4913 544 PHPFRAwLEAELGRRFdyvcvdspEELRRhpraitragqvkGNGTRHEKDDRRRIRSRyvlgfDNRAKLAALEAELAELE 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2256 DDMEKLGLAIKESDA--MSTQDQHVLFGKFAQiIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEKNELIRDLETQIE 2332
Cdd:COG4913 624 EELAEAEERLEALEAelDALQERREALQRLAE-YSWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2333 CLMSDQECVKRNR---EEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEM 2409
Cdd:COG4913 703 ELEEELDELKGEIgrlEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL 782
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
156-593 |
6.71e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 6.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 156 HLEMMESELAGKQHEIEELNRELEEMRVTYGT--EGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREfleLTE 233
Cdd:pfam15921 445 QMERQMAAIQGKNESLEKVSSLTAQLESTKEMlrKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAE---ITK 521
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 234 QSQKLQIQFQQLQasetlrnstHSSTAADLLQ-AKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEME- 311
Cdd:pfam15921 522 LRSRVDLKLQELQ---------HLKNEGDHLRnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEk 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 312 -QDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLEL---KDKLTTADKLLGELQEQIVQKNQEIKNmklELTNSKQKE 387
Cdd:pfam15921 593 aQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLeleKVKLVNAGSERLRAVKDIKQERDQLLN---EVKTSRNEL 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 388 RQSSEEIkqlmgtveELQKRNHKDSQFEtdivqrMEQETQRKLEQLRAELDEMygqqivqmkqeliRQHMAQMEEMKTRH 467
Cdd:pfam15921 670 NSLSEDY--------EVLKRNFRNKSEE------METTTNKLKMQLKSAQSEL-------------EQTRNTLKSMEGSD 722
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 468 KGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRA 547
Cdd:pfam15921 723 GHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRL 802
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 22538387 548 RQTIAEQESKLNEAHKSLSTVEDLkaeIVSASESRKELELKHEAEV 593
Cdd:pfam15921 803 KEKVANMEVALDKASLQFAECQDI---IQRQEQESVRLKLQHTLDV 845
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1976-2308 |
7.56e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 7.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1976 LSRQKeAMKAEAGPVEQQLlqetekLMKEKLEVQCQAEKVRDDLQkqvkaleiDVEEQVSRFIELEQEKNTELMDLRQQN 2055
Cdd:TIGR02169 210 AERYQ-ALLKEKREYEGYE------LLKEKEALERQKEAIERQLA--------SLEEELEKLTEEISELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2056 QALEKQLEKMrkfldeqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEhqtREVEQLANHLKEKTDKCSELLLSKEQL 2135
Cdd:TIGR02169 275 EELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2136 QRDIQERNEEIEKLEFRVRELEQALlvsADTFQKVEDrkhfgaveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQF 2215
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKEEL---EDLRAELEE--------------VDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2216 REELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEID 2295
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAA----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQELYDLKEEYD 479
|
330
....*....|...
gi 22538387 2296 QLNEQVTKLQQQL 2308
Cdd:TIGR02169 480 RVEKELSKLQREL 492
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1872-2390 |
7.97e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 7.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1872 KVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQE 1951
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1952 LLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAgpveqqllqeteklmKEKLEVQCQAEKVRddlqkqvKALEIDVE 2031
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE---------------KKKADELKKAEELK-------KAEEKKKA 1566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2032 EQVSRfieLEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQA------IDREHERDVFQQEIQKLEQQLKVVPRFQPISE 2105
Cdd:PTZ00121 1567 EEAKK---AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaeeAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2106 HQTREVEQLANHLKEKTDKCSELLLSKEQLQRdiqeRNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL 2185
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2186 SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNeEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 2265
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2266 KESDAMSTQDQHVLFGKFAQII--QEKEVEIDQLNEQVTKLQQQLKittDNKVIEEKNELIRDLETQIECLMSDQECVKR 2343
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLE---EADAFEKHKFNKNNENGEDGNKEADFNKEKD 1875
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 22538387 2344 NREEEIEQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDV 2390
Cdd:PTZ00121 1876 LKEDDEEEIEEADEIEKIDKDDIEREIP-NNNMAGKNNDIIDDKLDK 1921
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
272-776 |
9.39e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 9.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 272 THQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQdkkvensnkEEIQEKETIIEELNTKIIEEEKKTLELKDK 351
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERR---------EELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 352 LTTADKLLGEL-----------------QEQIVQKNQEIKNMKLELTNSKQKERQS----SEEIKQLMGTVEELQKRNHK 410
Cdd:PRK02224 281 VRDLRERLEELeeerddllaeaglddadAEAVEARREELEDRDEELRDRLEECRVAaqahNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 411 --------DSQFETDIVQRMEQETQrkLEQLRAELDEM---YGQQIVQMKQELIRQHMAQMEEMKTRHK-GEMENALRSY 478
Cdd:PRK02224 361 lreeaaelESELEEAREAVEDRREE--IEELEEEIEELrerFGDAPVDLGNAEDFLEELREERDELREReAELEATLRTA 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 479 SNiTVNEDQIKL---------MNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQR---QLEDLVE---ELSFSREQ 543
Cdd:PRK02224 439 RE-RVEEAEALLeagkcpecgQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEErleRAEDLVEaedRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 544 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMaesqeAELE 623
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI-----ESLE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 624 RLRTQL--LFSHEEELSKLKEDLEIEHRINIEKlKDNLGiHYKQQIDGLQNEMSQ-KIETMQFEKDNLITKQNQlileis 700
Cdd:PRK02224 593 RIRTLLaaIADAEDEIERLREKREALAELNDER-RERLA-EKRERKRELEAEFDEaRIEEAREDKERAEEYLEQ------ 664
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 701 klkdlqqslVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKEnDLQEKFAQLEAE 776
Cdd:PRK02224 665 ---------VEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEALYDEAE-ELESMYGDLRAE 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1849-2229 |
1.19e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELmRESFRQKQEATESLKCQeelrerlheESRAREQLAVelskaegvidgya 1928
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEEL-EEELEQLRKELEELSRQ---------ISALRKDLAR------------- 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1929 dektlFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLmkeklev 2008
Cdd:TIGR02168 738 -----LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL------- 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2009 qcqaekvrDDLQKQVKALEIDVEEQVSRFIELEQEKNtelmDLRQQNQALEKQLEKMRkfldEQAIDREHERDVFQQEIQ 2088
Cdd:TIGR02168 806 --------DELRAELTLLNEEAANLRERLESLERRIA----ATERRLEDLEEQIEELS----EDIESLAAEIEELEELIE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2089 KLEQQLKVVprfQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFq 2168
Cdd:TIGR02168 870 ELESELEAL---LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL- 945
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 2169 KVEDRKHFGAVEAKPELSLEVQLQAERDaIDRKEKEITNL-------EEQLEQFREELENKNEEVQQL 2229
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRR-LKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDL 1012
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2017-2220 |
1.23e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2017 DDLQKQVKALEiDVEEQVSRFIELEQEKNtELMDLRQQNQALEKQLEkmRKFLDEQAIDREHERDVFQQEIQKLEQQLKv 2096
Cdd:COG4913 245 EDAREQIELLE-PIRELAERYAAARERLA-ELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEARLD- 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2097 vprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHf 2176
Cdd:COG4913 320 --------ALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAA- 390
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2177 GAVEAKPELS---------LEVQLQAERDAIDRKEKEITNLE-------EQLEQFREELE 2220
Cdd:COG4913 391 ALLEALEEELealeealaeAEAALRDLRRELRELEAEIASLErrksnipARLLALRDALA 450
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2060-2591 |
1.33e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2060 KQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtreveQLANHLKEKTDKCSELLLSKEQLQRDI 2139
Cdd:TIGR04523 50 KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIK-----------------DLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2140 QERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKpelSLEVQLQAERDAIDRKEKEITNLEEQLEQFREEL 2219
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQK-------KENKKNIDKFLTEIK---KKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2220 ENKNEEVQQLHMQLeIQKKESTTRLQELEQENKLFKDDMEKLGlAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNE 2299
Cdd:TIGR04523 183 LNIQKNIDKIKNKL-LKLELLLSNLKKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2300 QVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECL---------------MSDQECVKRNREEEIEQLNEVIEKL 2359
Cdd:TIGR04523 261 EQNKIKKQLSekqkeLEQNNKKIKELEKQLNQLKSEISDLnnqkeqdwnkelkseLKNQEKKLEEIQNQISQNNKIISQL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2360 QQELANIgQKTSMNAHS----LSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKR 2435
Cdd:TIGR04523 341 NEQISQL-KKELTNSESenseKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2436 ERESVEKIQSIPENSVNVA---IDHLSKDKPELEVVLTEDALKSLENQTYFKSFEengkGSIINLETRLLQLESTVSAKD 2512
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNnseIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS----RSINKIKQNLEQKQKELKSKE 495
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 2513 LELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKvaaalvSQIQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQ 2591
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK------KEKESKISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
501-1163 |
1.63e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 501 KLQDTnsqKEKLkEELGLILEEkcaLQRQLEDLveelsfsREQIQRAR--QTIAEQESKLnEAHKSLSTVEDLKAEIVSA 578
Cdd:COG1196 180 KLEAT---EENL-ERLEDILGE---LERQLEPL-------ERQAEKAEryRELKEELKEL-EAELLLLKLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 579 SESRKELELKHEAEVTnykiKLEMLEKEKnavldrmaESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDn 658
Cdd:COG1196 245 EAELEELEAELEELEA----ELAELEAEL--------EELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 659 lgIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEmtlqINELQKEIEILRQEEKEK 738
Cdd:COG1196 312 --RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL----LEAEAELAEAEEELEELA 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 739 GTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIfldsikskskdsvw 818
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-------------- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 819 ekeieilieenEDLKQQCIQLNEEIEKQRNTFSFAEKNfevnYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNE 898
Cdd:COG1196 452 -----------AELEEEEEALLELLAELLEEAALLEAA----LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 899 ELhlQRINPTTVKMKSSVFDEDKTFVAETLE--MGEVVEKDTTELMEKLEVTKREK------LELSQRLSDLSEQLKQKH 970
Cdd:COG1196 517 AG--LRGLAGAVAVLIGVEAAYEAALEAALAaaLQNIVVEDDEVAAAAIEYLKAAKagratfLPLDKIRARAALAAALAR 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 971 GEISFLNEEVKSLKQEKEQVSLRCRE--LEIIINHNRAENVQscdtQVSSLLDGVVTMTSRGAEGsvskvnksfGEESKI 1048
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDtlLGRTLVAARLEAAL----RRAVTLAGRLREVTLEGEG---------GSAGGS 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1049 MVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKSEQNDLRLQMEAQRicLSLVYSTHV 1128
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL--EAEREELLE 739
|
650 660 670
....*....|....*....|....*....|....*
gi 22538387 1129 DQVREYMENEKDKALCSLKEELIFAQEEKIKELQK 1163
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
157-440 |
1.76e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 157 LEMMESELAGKQHEIEELNRELEEMRVtYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQ 236
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEA-EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 237 KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQIsflqekikvyemeqdkkv 316
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------------------ 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 317 eNSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQkerQSSEEIKQ 396
Cdd:TIGR02168 876 -EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSL 951
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 22538387 397 LMGTVEELQKRNHKDsqfetdivqrmEQETQRKLEQLRAELDEM 440
Cdd:TIGR02168 952 TLEEAEALENKIEDD-----------EEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2214-2442 |
2.17e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2214 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVE 2293
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-----KLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2294 IDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECL--MSDQECVkRNREEEIEQLNEVIEKLQQELANIGQKTS 2371
Cdd:TIGR02169 746 LSSLEQEIENVKSELK--ELEARIEELEEDLHKLEEALNDLeaRLSHSRI-PEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 2372 ---MNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 2442
Cdd:TIGR02169 823 rltLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
317-998 |
2.46e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 317 ENSNKEEIQEKETIIEELNTKIIEEEKKTLE-----LKDKLTTADKLLGELQEQIVQKNQEIKNMKLEL-TNSKQKERQS 390
Cdd:TIGR02169 206 EREKAERYQALLKEKREYEGYELLKEKEALErqkeaIERQLASLEEELEKLTEEISELEKRLEEIEQLLeELNKKIKDLG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 391 SEEIKQLMGTVEELQ------KRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQqiVQMKQELIRQHMAQMEEMK 464
Cdd:TIGR02169 286 EEEQLRVKEKIGELEaeiaslERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 465 TRhkgemENALRSysnitvnedQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQI 544
Cdd:TIGR02169 364 EE-----LEDLRA---------ELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 545 QRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELER 624
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 625 LRTQLLFSHE--------EELSKLKED--LEIE----HRIN-------------IEKLKD-NLG---------------- 660
Cdd:TIGR02169 510 RAVEEVLKASiqgvhgtvAQLGSVGERyaTAIEvaagNRLNnvvveddavakeaIELLKRrKAGratflplnkmrderrd 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 661 ---IHYKQQIDGLQN--EMSQKIE-----------------------------TMQ---FEKDNLIT----KQNQLILEI 699
Cdd:TIGR02169 590 lsiLSEDGVIGFAVDlvEFDPKYEpafkyvfgdtlvvedieaarrlmgkyrmvTLEgelFEKSGAMTggsrAPRGGILFS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 700 SKLKDlqqslvnsKSEEMTLQINELQKEIEILRQE----EKEKGTLEQEVQELQLKTELLEK---QMKEKENDLQEKFAQ 772
Cdd:TIGR02169 670 RSEPA--------ELQRLRERLEGLKRELSSLQSElrriENRLDELSQELSDASRKIGEIEKeieQLEQEEEKLKERLEE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 773 LEAENSILKDEKKTLEDMLKihtpvSQEERLIFLDSIKSKSKDSVwekeieilieenedlkqqciqlnEEIEKQRNTFSF 852
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELK-----ELEARIEELEEDLHKLEEAL-----------------------NDLEARLSHSRI 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 853 AEKNFEvnYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGE 932
Cdd:TIGR02169 794 PEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELE 871
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 933 VVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELE 998
Cdd:TIGR02169 872 ELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE 937
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1907-2252 |
2.52e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1907 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQqqiqeerELLSRQKEAMKAE 1986
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI-------EELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1987 AGPVEQQLLQEteklmkeklevqcQAEKVRDDLQKqvkaLEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR 2066
Cdd:TIGR02169 781 LNDLEARLSHS-------------RIPEIQAELSK----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2067 KfLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisEHQTrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 2146
Cdd:TIGR02169 844 D-LKEQIKSIEKEIENLNGKKEELEEELE---------ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2147 EKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEvQLQAERdaiDRKEKEITNLEE----QLEQFREELENK 2222
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAEL---QRVEEEIRALEPvnmlAIQEYEEVLKRL 988
|
330 340 350
....*....|....*....|....*....|
gi 22538387 2223 NeEVQQLHMQLEIQKKESTTRLQELEQENK 2252
Cdd:TIGR02169 989 D-ELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-791 |
3.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 424 QETQRKLEQLRAELDemygqQIVQMKQELIRQ--HMAQMEEMKTRHKgEMENALRsysnitvnEDQIKLMNVAINELNIK 501
Cdd:TIGR02168 175 KETERKLERTRENLD-----RLEDILNELERQlkSLERQAEKAERYK-ELKAELR--------ELELALLVLRLEELREE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 502 LQDTNSQKEKLKEELGlileekcALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAhksLSTVEDLKAEIVSASES 581
Cdd:TIGR02168 241 LEELQEELKEAEEELE-------ELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL---ANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 582 RKELELKHEAevtnYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLfSHEEELSKLKEDLEIEHRINIEKlkdnlgi 661
Cdd:TIGR02168 311 LANLERQLEE----LEAQLEELESKLDELAEELAE-LEEKLEELKEELE-SLEAELEELEAELEELESRLEEL------- 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 662 hyKQQIDGLQNEMSQKIETMQfekdnliTKQNQLILEISKLKDLQQSLVNSKSE----EMTLQINELQKEIEILRQEEKE 737
Cdd:TIGR02168 378 --EEQLETLRSKVAQLELQIA-------SLNNEIERLEARLERLEDRRERLQQEieelLKKLEEAELKELQAELEELEEE 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 22538387 738 KGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAensiLKDEKKTLEDML 791
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQ----LQARLDSLERLQ 498
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
489-1168 |
3.42e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 3.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 489 KLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELsfsreqIQRARQTIAEQESKLNEAHKSLSTV 568
Cdd:pfam02463 218 KLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEK------LAQVLKENKEEEKEKKLQEEELKLL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 569 EDLKAEIVSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEH 648
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 649 RINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLIL--EISKLKDLQQSLVNSKSEEMTLQINELQK 726
Cdd:pfam02463 372 EEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLlkEEKKEELEILEEEEESIELKQGKLTEEKE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 727 EIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIH-----TPVSQEE 801
Cdd:pfam02463 452 ELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGvggriISAHGRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 802 RLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFS-FAEKNFEVNYQELQEEYACLLKVKDDLED 880
Cdd:pfam02463 532 GDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRlLIPKLKLPLKSIAVLEIDPILNLAQLDKA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 881 SKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEV---VEKDTTELMEKLEVTKREKLELsQ 957
Cdd:pfam02463 612 TLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVkasLSELTKELLEIQELQEKAESEL-A 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 958 RLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLdgvvtmtsRGAEGSVSK 1037
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEE--------KSRLKKEEK 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1038 VNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKSEQNdLRLQMEAQR 1117
Cdd:pfam02463 763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE-EELEELALE 841
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 22538387 1118 ICLSLVYSTHVDQVREYMENEKDKALCSLKEELIFAQEEKIKELQKIHQLE 1168
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
2132-2480 |
3.56e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2132 KEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkVEDRKHFGAVEAKPELSLEVQ-LQAERDAI----DRKEKEIT 2206
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNE-----------LHEKQKFYLRQSVIDLQTKLQeMQMERDAMadirRRESQSQE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2207 NLEEQLEQFREELEN----KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGK 2282
Cdd:pfam15921 142 DLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2283 FAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVieekNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKL 2359
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQleaLKSESQNKI----ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2360 QQELANIGQ----KTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-- 2433
Cdd:pfam15921 298 QSQLEIIQEqarnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLdd 377
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 2434 ----------KRERE-SVEKIQSI----PENSVNVAIDHLSK--DKPELEVVLTEDALKSLENQ 2480
Cdd:pfam15921 378 qlqklladlhKREKElSLEKEQNKrlwdRDTGNSITIDHLRRelDDRNMEVQRLEALLKAMKSE 441
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2058-2634 |
3.85e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2058 LEKQLEKMRKFL------DEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLS 2131
Cdd:PRK03918 174 IKRRIERLEKFIkrteniEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2132 KEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKVEDRKHFGAvEAKPELSLEVQLQAERDAIDRKEKEITNLEEQ 2211
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELE----------EKVKELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2212 LEQFRE---ELENKNEEVQqlhmQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDqhvlfgkfaqiIQ 2288
Cdd:PRK03918 323 INGIEErikELEEKEERLE----ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT-----------PE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2289 EKEVEIDQLNEQVTKLQQQLKittdnKVIEEKNEL---IRDLETQIECLMSDQ-ECVKRNREEEIEQLNEVIEKLQQELA 2364
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEIS-----KITARIGELkkeIKELKKAIEELKKAKgKCPVCGRELTEEHRKELLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2365 NIgQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETAnEEMTFMKNVLKETNF-KMNQLTQELFSLKRERESVEKI 2443
Cdd:PRK03918 463 RI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2444 QSIPENSVNvAIDHLSKDKPELEVVL--TEDALKSLENQtyfksFEENGKGSIINLETRLLQLEStVSAKDLELTQCYKQ 2521
Cdd:PRK03918 541 IKSLKKELE-KLEELKKKLAELEKKLdeLEEELAELLKE-----LEELGFESVEELEERLKELEP-FYNEYLELKDAEKE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2522 IKDMQEQGQFETEMLQKKIVNLQKIveEKVAAALVSQIQlEAVQEYakfcqdnqtisSEPERTNIQNlnqlREDELGSDI 2601
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAET--EKRLEELRKELE-ELEKKY-----------SEEEYEELRE----EYLELSREL 675
|
570 580 590
....*....|....*....|....*....|...
gi 22538387 2602 SALTLRISELESQVVEMHTSLILEKEQVEIAEK 2634
Cdd:PRK03918 676 AGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
322-547 |
4.00e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 4.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 322 EEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTV 401
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 402 EELQKRNHKdsqfETDIVQRMEQETQRKL-----EQLRAELDEMYGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALR 476
Cdd:COG4942 100 EAQKEELAE----LLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 477 SYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRA 547
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
140-645 |
4.33e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 4.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 140 GVDDSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTygtegLQQLQEFEAAIKQRDGIITQLTANLQQARR 219
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARET-----RDEADEVLEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 220 EKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQIS 299
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 300 FLQEKIKVYEMEQDKKVE---------NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKN 370
Cdd:PRK02224 346 SLREDADDLEERAEELREeaaeleselEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 371 QEIKnmklELTNSKQKERQSSEEIKQLM---------------GTVEELQKRNHKDSQFETDIVQRMEQETQR------- 428
Cdd:PRK02224 426 EREA----ELEATLRTARERVEEAEALLeagkcpecgqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVeerlera 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 429 -KLEQLRAELDEMygQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNS 507
Cdd:PRK02224 502 eDLVEAEDRIERL--EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 508 QKEKLKEELGLI--LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLStvEDLKAEIVSASESRKEL 585
Cdd:PRK02224 580 KLAELKERIESLerIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE--AEFDEARIEEAREDKER 657
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538387 586 ELKHEAEVTNykiKLEMLEKEKNAVLDR--MAESQEAELERLRTQLlfsheEELSKLKEDLE 645
Cdd:PRK02224 658 AEEYLEQVEE---KLDELREERDDLQAEigAVENELEELEELRERR-----EALENRVEALE 711
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
161-366 |
4.44e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 4.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 161 ESELAGKQHEIEELNRELEEMRVTYgTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI 240
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 241 QFQQlQASETLRNSTHSS-----TAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKK 315
Cdd:COG4942 105 ELAE-LLRALYRLGRQPPlalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 22538387 316 VENSNK--EEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 366
Cdd:COG4942 184 EEERAAleALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1796-2442 |
4.96e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.22 E-value: 4.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1796 PSYSGSDMPRNDINMWSKVTEEGTELSQRLVRSGFAGTEIDPENEELMlnissRLQAAVEKLLEA-ISETSSQLEHAKVT 1874
Cdd:PTZ00121 1074 PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK-----KKAEDARKAEEArKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1875 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQL--AVELSKAEGVIDGYADEKTLFERQIQEktdiIDRLEQEL 1952
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKAEEERKAEE----ARKAEDAK 1224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1953 LCASNRLQELEAEQQQIQEERELLSRQKEAMKAEagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQvKALEIDVEE 2032
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE----EARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAE 1299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2033 QVSRFIELEQ--EKNTELMDLRQQNQALEKQLEKMRKfldeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTRE 2110
Cdd:PTZ00121 1300 EKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKK----KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2111 VEQLANHLKEKTDKCSELLLSKEQLQRDiQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKPELSLEVQ 2190
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEED-KKKADELKKAAAAKKKADEAK-------KKAEEKKKADEAKKKAEEAKKAD 1447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2191 lQAERDAIDRKEKEitNLEEQLEQFR--EELENKNEE---VQQLHMQLEIQKKEStTRLQELEQENKlfKDDMEKLGLAI 2265
Cdd:PTZ00121 1448 -EAKKKAEEAKKAE--EAKKKAEEAKkaDEAKKKAEEakkADEAKKKAEEAKKKA-DEAKKAAEAKK--KADEAKKAEEA 1521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2266 KESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIEclmsdqecVKRNR 2345
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK--------AEEAR 1593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2346 EEEIEQLNEVIEKLQQELANIGQKTSMNAHSL--SEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKM 2423
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
650
....*....|....*....
gi 22538387 2424 NQLTQELFSLKRERESVEK 2442
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAE 1692
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1981-2387 |
6.53e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1981 EAMKAEA-GPVEQQL--LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEI------DVEEQVSRFIELEQEKNTELMDL 2051
Cdd:pfam15921 436 KAMKSECqGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtleSSERTVSDLTASLQEKERAIEAT 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2052 RQQNQALEKQLEKMRKFLDEQAIDREHERDVfQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANhlkEKTDKCSELLLS 2131
Cdd:pfam15921 516 NAEITKLRSRVDLKLQELQHLKNEGDHLRNV-QTECEALKLQMAEKDKVIEILRQQIENMTQLVG---QHGRTAGAMQVE 591
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2132 KEQLQRDIQERNEEIEKLEF-------RVRELEQAllVSADTFQKVEdrkhfgAVEAKPELSLEVQ-LQAERDAIDRKEK 2203
Cdd:pfam15921 592 KAQLEKEINDRRLELQEFKIlkdkkdaKIRELEAR--VSDLELEKVK------LVNAGSERLRAVKdIKQERDQLLNEVK 663
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2204 ----EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTrlqELEQENKLFKDDMEKLGLAIKESDAMSTQdqhvl 2279
Cdd:pfam15921 664 tsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHAMKVAMGMQKQ----- 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2280 fgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNK--VIEEKNELIRDLETqieclmsdQECVKRNREEEIEQLNEVIE 2357
Cdd:pfam15921 736 -------ITAKRGQIDALQSKIQFLEEAMTNANKEKhfLKEEKNKLSQELST--------VATEKNKMAGELEVLRSQER 800
|
410 420 430
....*....|....*....|....*....|
gi 22538387 2358 KLQQELANIGQKTSMNAHSLSEEADSLKHQ 2387
Cdd:pfam15921 801 RLKEKVANMEVALDKASLQFAECQDIIQRQ 830
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
510-1023 |
8.17e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 8.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 510 EKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKELElKH 589
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL---PELREELEKLEKEVKELE-EL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 590 EAEVTNYKIKLEMLEKEKNAV------LDRMAESQEAELERLRTQLLFSHE--------EELSKLKEDLEIEHRiNIEKL 655
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLeekireLEERIEELKKEIEELEEKVKELKElkekaeeyIKLSEFYEEYLDELR-EIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 656 KDNlgihYKQQIDGLQNEMSqKIETMQFEKDNLITKQNQLILEISKLKdlqqslvnsKSEEMTLQINELQKEIEILRQEE 735
Cdd:PRK03918 316 LSR----LEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELE---------ERHELYEEAKAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 736 KEKgtleqEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHT-------PVSQEERLIFLDS 808
Cdd:PRK03918 382 TGL-----TPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgrELTEEHRKELLEE 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 809 IKSKSKDSvwEKEIEILIEENEDLKQQCIQLNEEIEKQRNTF----------SFAEKNFEVNYQELQEEYACLLKVKDDL 878
Cdd:PRK03918 457 YTAELKRI--EKELKEIEEKERKLRKELRELEKVLKKESELIklkelaeqlkELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 879 edskNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELS-- 956
Cdd:PRK03918 535 ----IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKda 610
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 957 -QRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAENVQSCDTQVSSLLDGV 1023
Cdd:PRK03918 611 eKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGL 678
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2198-2550 |
8.79e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 8.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2198 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ 2274
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2275 DQHVLFGKFAQIIQeKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLmsdqECVKRNREEEI 2349
Cdd:TIGR04523 108 INSEIKNDKEQKNK-LEVELNKLEKQKKENKKNIDkflteIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2350 EQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 2429
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLS-NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2430 LFSLKREREsvEKIQSIPENsvNVAIDHLSKDKPELEVVLTEdaLKSLENQTY---FKSFEENGKGSIINLETRLLQLES 2506
Cdd:TIGR04523 262 QNKIKKQLS--EKQKELEQN--NKKIKELEKQLNQLKSEISD--LNNQKEQDWnkeLKSELKNQEKKLEEIQNQISQNNK 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 22538387 2507 TVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEK 2550
Cdd:TIGR04523 336 IISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
330-987 |
1.10e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 330 IIEELNTKIIEEEKKTLELK-------DKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVE 402
Cdd:TIGR04523 27 IANKQDTEEKQLEKKLKTIKnelknkeKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLS 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 403 ELqkrnhkDSQFETDIVQRMEQETQ-RKLEQLRAELDEmygqQIVQMKQELIRQHmAQMEEMKTRHKgEMENALRSYsni 481
Cdd:TIGR04523 107 KI------NSEIKNDKEQKNKLEVElNKLEKQKKENKK----NIDKFLTEIKKKE-KELEKLNNKYN-DLKKQKEEL--- 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 482 tvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLI---LEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKL 558
Cdd:TIGR04523 172 ---ENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLkkkIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEI 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 559 NEAHKSLSTVEDLKAEIVSaSESRKELELKH--------EAEVTNYKIKLEMLEKEKNAVLDRMA----ESQEAELERLR 626
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKK-QLSEKQKELEQnnkkikelEKQLNQLKSEISDLNNQKEQDWNKELkselKNQEKKLEEIQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 627 TQLLFShEEELSKLKEDLEiehriNIEKLKDNLGIHyKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILEISKLkdlq 706
Cdd:TIGR04523 328 NQISQN-NKIISQLNEQIS-----QLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL---- 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 707 qslvNSKSEEMTLQINELQKEIEILrqeEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKT 786
Cdd:TIGR04523 397 ----ESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQ 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 787 LEDmlkihtpvsqeerliFLDSIKSkskdsvwekeieilieENEDLKQQCIQLNEEiEKQRNTFSFAEKNFEVNYQELQE 866
Cdd:TIGR04523 470 LKV---------------LSRSINK----------------IKQNLEQKQKELKSK-EKELKKLNEEKKELEEKVKDLTK 517
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 867 EYACLLKVKDDLEDSKNKQEleykSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVaETLEMGEVVEKDTTELMEKLE 946
Cdd:TIGR04523 518 KISSLKEKIEKLESEKKEKE----SKISDLEDELNKDDFELKKENLEKEIDEKNKEIE-ELKQTQKSLKKKQEEKQELID 592
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 22538387 947 VTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEK 987
Cdd:TIGR04523 593 QKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
191-407 |
1.25e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 191 QQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQI 270
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 271 LTHQQQLEEQdhlLEDYQKKKEDFTMQISFLQEKIK--VYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLEL 348
Cdd:COG4942 100 EAQKEELAEL---LRALYRLGRQPPLALLLSPEDFLdaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 349 KDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKR 407
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2133-2308 |
1.28e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2133 EQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAkpELSlevQLQAERDAIDRKEKEITNLEEQL 2212
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER--EIA---ELEAELERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2213 EQFREELENKNEEVQQLhmQLEIQKKEST-TRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE 2291
Cdd:COG4913 695 EELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE 772
|
170
....*....|....*..
gi 22538387 2292 VEIDQLNEQVTKLQQQL 2308
Cdd:COG4913 773 ERIDALRARLNRAEEEL 789
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1978-2769 |
1.35e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1978 RQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQA 2057
Cdd:pfam02463 205 QAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2058 LEKQLEKMrKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQR 2137
Cdd:pfam02463 285 EEELKLLA-KEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2138 DIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL----SLEVQLQAERDAIDRKEKEITNLEEQLE 2213
Cdd:pfam02463 364 LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLelarQLEDLLKEEKKEELEILEEEEESIELKQ 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2214 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVE 2293
Cdd:pfam02463 444 GKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2294 IDQLNEQVTKLQQQL---KITTDNKVIEEKNELIRDLETQIECLMSDQE-----------------------------CV 2341
Cdd:pfam02463 524 IISAHGRLGDLGVAVenyKVAISTAVIVEVSATADEVEERQKLVRALTElplgarklrllipklklplksiavleidpIL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2342 KRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNF 2421
Cdd:pfam02463 604 NLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2422 KMNQLTQELFSLKRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRL 2501
Cdd:pfam02463 684 KAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2502 LQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKFCQDNQTISSEP 2581
Cdd:pfam02463 764 EEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2582 ERTNIQNLNQLrEDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQREKE 2661
Cdd:pfam02463 844 EEQKLEKLAEE-ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2662 KKRSPQdvevlktttELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLA 2741
Cdd:pfam02463 923 IKEEAE---------ILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKD 993
|
810 820
....*....|....*....|....*...
gi 22538387 2742 EAKEKLSILEKEDETEVQESKKACMFEP 2769
Cdd:pfam02463 994 ELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
214-629 |
1.43e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 214 LQQARREKDETMREFLELTEQSQKLQIQFQQLQASEtlrnsTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKED 293
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAEL-----EELREELEKLEKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 294 FTMQISFLQEKIKvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLE-LKDKLTTADKLLGELQEQIVQKNQE 372
Cdd:COG4717 151 LEERLEELRELEE--ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEeLQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 373 IKNMKLELTNSKQKERQSSEEIKQL-MGTVEELQKRNHKDSQFETDI----------VQRMEQETQRKLEQLRAELDEmy 441
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIagvlflvlglLALLFLLLAREKASLGKEAEE-- 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 442 gqqiVQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELN--IKLQDTNSQKEKLKEELGL- 518
Cdd:COG4717 307 ----LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVe 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 519 ---ILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEahkslstvEDLKAEIVSASESRKELELKHE---AE 592
Cdd:COG4717 383 deeELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--------EELEEELEELEEELEELEEELEelrEE 454
|
410 420 430
....*....|....*....|....*....|....*..
gi 22538387 593 VTNYKIKLEMLEKeknavlDRMAESQEAELERLRTQL 629
Cdd:COG4717 455 LAELEAELEQLEE------DGELAELLQELEELKAEL 485
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
505-792 |
1.50e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 51.01 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 505 TNSQKEKLKEELGLILEE---KCALQRQLEDLVEELSFSREQIQRARQTIAEQESKL-NEAHKSLSTV---EDLKAEI-- 575
Cdd:PLN03229 460 LNEMIEKLKKEIDLEYTEaviAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLkDEFNKRLSRApnyLSLKYKLdm 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 576 -VSASESRKELELKHEAEvtnyKIKLEMLEKEKnAVLDRmaESQEAELERLRTQLlfsHEEELSKLkEDLEIEHRINIEK 654
Cdd:PLN03229 540 lNEFSRAKALSEKKSKAE----KLKAEINKKFK-EVMDR--PEIKEKMEALKAEV---ASSGASSG-DELDDDLKEKVEK 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 655 LKDNLgihykqqidglQNEMSQKIETMQFEKDNLITKQNQLILEI------SKLKDLQQSlVNSKSEEMtLQINELQKEI 728
Cdd:PLN03229 609 MKKEI-----------ELELAGVLKSMGLEVIGVTKKNKDTAEQTpppnlqEKIESLNEE-INKKIERV-IRSSDLKSKI 675
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 729 EILRQEeKEKGTLEQEVQELQlKTELLEKQMKEK------ENDLQEKFAQLEAENSILKDEKKTLEDMLK 792
Cdd:PLN03229 676 ELLKLE-VAKASKTPDVTEKE-KIEALEQQIKQKiaealnSSELKEKFEELEAELAAARETAAESNGSLK 743
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1929-2443 |
1.58e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQeleaEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEV 2008
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2009 QCQAEKVRDDLQKQVKALE-IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEI 2087
Cdd:PRK03918 276 EELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2088 QKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL-LSKEQLQRDIQERNEEIEKLEFRVRELEQAL--LVSA 2164
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISKITARIGELKKEIKELKKAIeeLKKA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2165 DTFQKVEDRKhfgaVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELE---NKNEEVQQLHMQLE----IQK 2237
Cdd:PRK03918 435 KGKCPVCGRE----LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEkvlKKESELIKLKELAEqlkeLEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2238 KESTTRLQELEQENKLFKDDMEKLG-----LAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKL------QQ 2306
Cdd:PRK03918 511 KLKKYNLEELEKKAEEYEKLKEKLIklkgeIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2307 QLKITTDNKVIEEKNELiRDLETQIECLMSDQECVKRNREEEIEQLNEV---IEKLQQELANIGQKTSMNAH-SLSEEAD 2382
Cdd:PRK03918 591 EERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELAETekrLEELRKELEELEKKYSEEEYeELREEYL 669
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 2383 SLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKEtnfkMNQLTQELFSLKRERESVEKI 2443
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE----REKAKKELEKLEKALERVEEL 726
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
267-971 |
1.93e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 267 KQQILTHQQQLEeqdhLLEDYQKKKEDFTMQISFLQEKIKVyEMEQDKKVENSNkEEIQEKETIIEELNTKIIEEEKKTL 346
Cdd:TIGR00606 199 GQKVQEHQMELK----YLKQYKEKACEIRDQITSKEAQLES-SREIVKSYENEL-DPLKNRLKEIEHNLSKIMKLDNEIK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 347 ELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEE-----IKQLMGTVEELQKRNHKDSQFETDI--- 418
Cdd:TIGR00606 273 ALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERelvdcQRELEKLNKERRLLNQEKTELLVEQgrl 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 419 --------VQRMEQETQRKLEQLRAELDEM----YGQQIVQMKQELIRQHMAQMEEMKTRHKGEMENALR-SYSNITVNE 485
Cdd:TIGR00606 353 qlqadrhqEHIRARDSLIQSLATRLELDGFergpFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERlKQEQADEIR 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 486 DQIKLMNVAINELNIKLQDTNSQKEKLKEEL-------GLILEEKCALQRQLEDL-------------VEELSFSREQ-- 543
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELqqlegssDRILELDQELRKAERELskaeknsltetlkKEVKSLQNEKad 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 544 IQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEAEVT-------NYKI---KLEMLEKEKNAVLDR 613
Cdd:TIGR00606 513 LDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTsllgyfpNKKQledWLHSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 614 MAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EIEHRINIEKLKDNLGIHYKQQ--IDGLQNEMSQKIETM 681
Cdd:TIGR00606 593 LAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSSKQRamLAGATAVYSQFITQL 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 682 QFEKDNL------ITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEIL----RQEEKEKGTLEQEVQELQLK 751
Cdd:TIGR00606 673 TDENQSCcpvcqrVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglaPGRQSIIDLKEKEIPELRNK 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 752 TELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDmlkihtpvsqeerLIFLDSIKSKSKDSVWEKEIEILIEENED 831
Cdd:TIGR00606 753 LQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD-------------VTIMERFQMELKDVERKIAQQAAKLQGSD 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 832 LKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYacllKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVK 911
Cdd:TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ----EQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST 895
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 912 MKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHG 971
Cdd:TIGR00606 896 EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2133-2357 |
1.95e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.63 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2133 EQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDrkhfgaveakpELSLevqLQAERDAIDRKEKEITNLEEQL 2212
Cdd:COG2433 409 TEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLER-----------ELSE---ARSEERREIRKDREISRLDREI 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2213 EQFREELENKNEEVQQLHMQLEIQKkesttRLQELEQENKLF---------KDDMEKL--GLAIKESDAMSTQDQHVLFG 2281
Cdd:COG2433 475 ERLERELEEERERIEELKRKLERLK-----ELWKLEHSGELVpvkvvekftKEAIRRLeeEYGLKEGDVVYLRDASGAGR 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2282 KFAQIIQEKEVEI----DQLNEQVTKLQQQLKI---TTDNKVIEEKNEL----IRDLETQIECLMSDQEcvKRNREEEIE 2350
Cdd:COG2433 550 STAELLAEAGPRAvivpGELSEAADEVLFEEGIpvlPAEDVTIQEVDDLavvdEEELEAAIEDWEERAE--ERRREKKAE 627
|
....*..
gi 22538387 2351 QLNEVIE 2357
Cdd:COG2433 628 MLERLIS 634
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
143-782 |
2.29e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 143 DSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRvtygteglQQLQEFEAAIKQRDGIITQLTA--------NL 214
Cdd:COG4913 269 ERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLE--------AELERLEARLDALREELDELEAqirgnggdRL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 215 QQARREKDETMREFLELTEQSQKLQIQFQQLQASETLrnsthssTAADLLQAKQQILTHQQQLEEQDHLLEDYQ----KK 290
Cdd:COG4913 341 EQLEREIERLERELEERERRRARLEALLAALGLPLPA-------SAEEFAALRAEAAALLEALEEELEALEEALaeaeAA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 291 KEDFTMQISFLQEKIKVYEmeqdKKVENSNKEEIQEKETIIEELNtkIIEEEKK----TLELKDK----LTTADKLLGEL 362
Cdd:COG4913 414 LRDLRRELRELEAEIASLE----RRKSNIPARLLALRDALAEALG--LDEAELPfvgeLIEVRPEeerwRGAIERVLGGF 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 363 -------QEQIVQKNQEIKNMKLeltnskqKERQSSEEIKQlmGTVEELQKRNHKDSqfetdIVQRMEQETQRKLEQLRA 435
Cdd:COG4913 488 altllvpPEHYAAALRWVNRLHL-------RGRLVYERVRT--GLPDPERPRLDPDS-----LAGKLDFKPHPFRAWLEA 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 436 ELDEMYGQQIVQMKQELIRQHMA-----QMEEMKTRHKGEMENALRSYSNI-TVNEDQIKLMNVAINELNIKLQDTNSQK 509
Cdd:COG4913 554 ELGRRFDYVCVDSPEELRRHPRAitragQVKGNGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEELAEAEERL 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 510 EKLKEELGLILEEKCALQRqledlVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIvsasesrKELELKH 589
Cdd:COG4913 634 EALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQL-------EELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 590 EAevtnykiklemLEKEKNAVLDRMAEsQEAELERLRTQLLfSHEEELSKLKEDLEIEHRINIEKLKDNLGI--HYKQQI 667
Cdd:COG4913 702 EE-----------LEEELDELKGEIGR-LEKELEQAEEELD-ELQDRLEAAEDLARLELRALLEERFAAALGdaVERELR 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 668 DGLQNEMSQKIETMQFEKDNLITKQNQLILE-ISKLKDLQQSLvnsKSEEMTLQINELQKEIEILRQEEKEKGTLEQevQ 746
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRAFNREwPAETADLDADL---ESLPEYLALLDRLEEDGLPEYEERFKELLNE--N 843
|
650 660 670
....*....|....*....|....*....|....*.
gi 22538387 747 ELQLKTELLEKqMKEKENDLQEKFAQLeaeNSILKD 782
Cdd:COG4913 844 SIEFVADLLSK-LRRAIREIKERIDPL---NDSLKR 875
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
355-581 |
2.40e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 355 ADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRnHKDSQFETDIVQRMEQETQRKLEQLR 434
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 435 AELDEmygqqivqmKQELIRQHMAQMEEMKTRHKGEM----ENALRSYSNITV-------NEDQIKLMNVAINELNIKLQ 503
Cdd:COG4942 97 AELEA---------QKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYlkylapaRREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 504 DTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASES 581
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
541-900 |
2.51e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 541 REQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELElkhEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEA 620
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR---EYEGYELLKEKEALERQKEAIERQLAS-LEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 621 ELERLrTQLLFSHEEELSKLKEDLEIEHRiNIEKLKDNLGIHYKQQIDGLQNEMSQ---KIETMQFEKDNLITKQNQLIL 697
Cdd:TIGR02169 252 ELEKL-TEEISELEKRLEEIEQLLEELNK-KIKDLGEEEQLRVKEKIGELEAEIASlerSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 698 EISKLKdlqqslvnskseemtLQINELQKEIEilrQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLeaen 777
Cdd:TIGR02169 330 EIDKLL---------------AEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL---- 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 778 silKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRntfsfaeknf 857
Cdd:TIGR02169 388 ---KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE---------- 454
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 22538387 858 evnyQELQEEYACLLKVKDDLEDSKNKQElEYKSKLKALNEEL 900
Cdd:TIGR02169 455 ----WKLEQLAADLSKYEQELYDLKEEYD-RVEKELSKLQREL 492
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1576-2095 |
2.71e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1576 ASRQLMLNEEQLEDMRQELVRQYQEHQQATELLRQAHMR------QMERQREDQEQLQEEIKRLNRQLAQRSSiDNENLV 1649
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAElarleqDIARLEERRRELEERLEELEEELAELEE-ELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1650 SERERVLLEELEALKQLSLAgREKLCCELRNSSTQTQNGNENQGEVEEQTFKEKELDRKPEDvppeiLSNERYALQKANN 1729
Cdd:COG1196 337 EELEELEEELEEAEEELEEA-EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE-----LAAQLEELEEAEE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1730 RLLKILLEVVKTTAAVEETIGRHVLGILDRSSKSQSSASLIWRSEAEASVKSCVHEEHTRVTDESIPSYSGSDMPRNDin 1809
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-- 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1810 mwsKVTEEGTELSQRLVRSGFAGTEIDPENEELMLNISSRLQ------AAVEKLLEAISETSSQLEHAKVTQTELMRESF 1883
Cdd:COG1196 489 ---AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1884 RQKQEATESLKCQEELRERLHEESRAREQLAVELskAEGVIDGYADEKTLFERQIQEkTDIIDRLEQELLCASNRLQELE 1963
Cdd:COG1196 566 LKAAKAGRATFLPLDKIRARAALAAALARGAIGA--AVDLVASDLREADARYYVLGD-TLLGRTLVAARLEAALRRAVTL 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1964 AEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE 2043
Cdd:COG1196 643 AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 2044 KNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHE---RDVFQQEIQKLEQQLK 2095
Cdd:COG1196 723 EEALEEQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIE 777
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2063-2261 |
2.96e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.38 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2063 EKMRKFLDEQAIDreherdvfqQEIQKLEQQLKVVPRfqpisehqtrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQER 2142
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2143 NEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENK 2222
Cdd:COG1579 65 ELEIEEVEARIKKYEEQL-------GNVRNNKEYEA--------LQKEIESLKRRISDLEDEILELMERIEELEEELAEL 129
|
170 180 190
....*....|....*....|....*....|....*....
gi 22538387 2223 NEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL 2261
Cdd:COG1579 130 EAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
309-1007 |
3.09e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 309 EMEQDKKVENSNKEEIQEKETIIEE---LNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKnmKLELTNSKQ 385
Cdd:PTZ00121 1078 DFDFDAKEDNRADEATEEAFGKAEEakkTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR--KAEDAKRVE 1155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 386 KERQSSEEIKQLMGTVEELQKRNHKDSQFETdiVQRMEQ----ETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMAQME 461
Cdd:PTZ00121 1156 IARKAEDARKAEEARKAEDAKKAEAARKAEE--VRKAEElrkaEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAE 1233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 462 EMKTRhkgemENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQ-RQLEDL--VEELS 538
Cdd:PTZ00121 1234 EAKKD-----AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEaKKAEEKkkADEAK 1308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 539 FSREQIQRARQTI--AEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKH-EAEVTNYKIKLEMLEKEKNAVLDRMA 615
Cdd:PTZ00121 1309 KKAEEAKKADEAKkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 616 ESQEAELERLRTQLLFSHEEELSKLKEDLEI--EHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQfEKDNLITKQN 693
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAE 1467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 694 qlilEISKLKDLQQSLVNS-KSEEMTLQINELQKEIEILRQ--EEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKF 770
Cdd:PTZ00121 1468 ----EAKKADEAKKKAEEAkKADEAKKKAEEAKKKADEAKKaaEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE 1543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 771 AQLEAENSILKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQrntf 850
Cdd:PTZ00121 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK---- 1619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 851 sfaEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKTFVAETLEM 930
Cdd:PTZ00121 1620 ---IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 931 GEVVEKDTTELMEKL--EVTKREKLELSQRLSDL-SEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRELEIIINHNRAE 1007
Cdd:PTZ00121 1697 EAEEAKKAEELKKKEaeEKKKAEELKKAEEENKIkAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
512-803 |
3.10e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 512 LKEELGLILEekcALQR----QLEDLVEELSfsREQIQRARqtiaeqeSKLNEAHKSLSTVEDLKAEIVSASESRKELEL 587
Cdd:PRK05771 14 LKSYKDEVLE---ALHElgvvHIEDLKEELS--NERLRKLR-------SLLTKLSEALDKLRSYLPKLNPLREEKKKVSV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 588 KHEAEVtnykikLEMLEKEKNAVLDRMaESQEAELERLRTQLlfsheEELSKLKEDLEIEHRINIEkLKDNLGIHYKQQI 667
Cdd:PRK05771 82 KSLEEL------IKDVEEELEKIEKEI-KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 668 DGlqnemsqKIETMQFEKDNLITKQNQLIlEISKLKDLQQSLVNSKSEEMTLQINELqKEIEILRQEEKEKGTLEQEVQE 747
Cdd:PRK05771 149 VG-------TVPEDKLEELKLESDVENVE-YISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIRE 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 748 L-----QLKTEL--LEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLK------IH--TPVSQEERL 803
Cdd:PRK05771 220 IkeeleEIEKEResLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKtdktfaIEgwVPEDRVKKL 290
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
173-429 |
3.34e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 173 ELNRELEEMRVTYGTEGLQQLQEFEAAIKQRDgiiTQLTANLQQARREKDETMREFLElteQSQKLQIQFQQLQASETLR 252
Cdd:pfam17380 345 ERERELERIRQEERKRELERIRQEEIAMEISR---MRELERLQMERQQKNERVRQELE---AARKVKILEEERQRKIQQQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 253 NSTHSSTAADLLQAKQQILthQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKikvyemEQDKKVENSNKEEIQEKETIIE 332
Cdd:pfam17380 419 KVEMEQIRAEQEEARQREV--RRLEEERAREMERVRLEEQERQQQVERLRQQ------EEERKRKKLELEKEKRDRKRAE 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 333 ELNTKIIEEE-----KKTLELKDKLTTADKLLGELQEQIVQKNQEiknMKLELTNSKQKERQSSEEIKQLMGTVEELQKR 407
Cdd:pfam17380 491 EQRRKILEKEleerkQAMIEEERKRKLLEKEMEERQKAIYEEERR---REAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
250 260
....*....|....*....|..
gi 22538387 408 NHKDSQFETDIVQRMEQETQRK 429
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARA 589
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
2038-2445 |
3.71e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 3.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2038 IELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQaidreherdvfQQEIQKLEQQLKVvprfqpISEHQTREVEQLANH 2117
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK-----------TTEISNTQTQLNQ------LKDEQNKIKKQLSEK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2118 LKEkTDKCSELLlskEQLQRDIQERNEEIEKLEfrvRELEQALLVSADTFQKVEDRKhfgaveakpELSLEVQLQAERDA 2197
Cdd:TIGR04523 273 QKE-LEQNNKKI---KELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKK---------LEEIQNQISQNNKI 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2198 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQenklFKDDMEKLGLAIKESDAMSTQDQH 2277
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN----LESQINDLESKIQNQEKLNQQKDE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2278 VLfGKFAQIIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREE---EI 2349
Cdd:TIGR04523 413 QI-KKLQQEKELLEKEIERLKETIIKNNSEIKdltnqDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkqkEL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2350 EQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFK--MNQLT 2427
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEkeIDEKN 567
|
410
....*....|....*...
gi 22538387 2428 QELFSLKRERESVEKIQS 2445
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQE 585
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
209-807 |
3.77e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 209 QLTANLQQARREKDETMREFLELTEQSQKlqiQFQQLQASETLRNSthsstAADLLQAKQQILTHQQQLEEQDHL-LEDY 287
Cdd:COG5022 831 KLRETEEVEFSLKAEVLIQKFGRSLKAKK---RFSLLKKETIYLQS-----AQRVELAERQLQELKIDVKSISSLkLVNL 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 288 QKKKE--DFTMQIS---FLQEKIKVYEMEQDKKV-ENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGE 361
Cdd:COG5022 903 ELESEiiELKKSLSsdlIENLEFKTELIARLKKLlNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTI 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 362 LQEQIVQKNQEIKNMKLELTN-SKQKER--QSSEEIKQLMGTVEELQKRNHKDSQfETDIVQRMeqetqRKLEQLRAELD 438
Cdd:COG5022 983 LVREGNKANSELKNFKKELAElSKQYGAlqESTKQLKELPVEVAELQSASKIISS-ESTELSIL-----KPLQKLKGLLL 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 439 EMYgqqivqmkqeliRQHMAQMEEMKTRHkgemENALRSYSNITVNEDQIKLMNvAINELNIKLQDTNSQKEKLKEE--- 515
Cdd:COG5022 1057 LEN------------NQLQARYKALKLRR----ENSLLDDKQLYQLESTENLLK-TINVKDLEVTNRNLVKPANVLQfiv 1119
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 516 -----LGLILEEK-----------------CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK-----SLSTV 568
Cdd:COG5022 1120 aqmikLNLLQEISkflsqlvntlepvfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDeksklSSSEV 1199
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 569 EDLKAEIVS-ASESRKELELKHE-----AEVTNYKIKLEMLeKEKNAVLDRMAESQEAELERLRTQLLfSHEEELSKLKE 642
Cdd:COG5022 1200 NDLKNELIAlFSKIFSGWPRGDKlkkliSEGWVPTEYSTSL-KGFNNLNKKFDTPASMSNEKLLSLLN-SIDNLLSSYKL 1277
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 643 DLEIEHRInieklkdnlgihykqqidglQNEMSQKIETMQFekDNLITKQNQLILEISKLKDLQQSLVNSKSEEMtlQIN 722
Cdd:COG5022 1278 EEEVLPAT--------------------INSLLQYINVGLF--NALRTKASSLRWKSATEVNYNSEELDDWCREF--EIS 1333
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 723 ELQKEIEILRQEEKEKGTLE-------------QEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLED 789
Cdd:COG5022 1334 DVDEELEELIQAVKVLQLLKddlnkldelldacYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQLSLEG 1413
|
650 660
....*....|....*....|..
gi 22538387 790 MLKIHTPVSQ----EERLIFLD 807
Cdd:COG5022 1414 KDETEVHLSEifseEKSLISLD 1435
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3127-3444 |
4.43e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 4.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3127 QQKQSQMLEMQVELSSMKDRATELQEQLSSekmvvAELKSELAQTKLELETTLKAQHKHL---------KELEAFRLEVK 3197
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKS-----LERQAEKAERYKELKAELRELELALlvlrleelrEELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3198 DKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKF---SLESQKQRNLQLNLLLEQQKQLLNESQ 3274
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANeisRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3275 QKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTL----DRERELHAQLQSSdgtgqsrpplpsEDLLKELQK 3350
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeeleSRLEELEEQLETL------------RSKVAQLEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3351 QLEEKHSRIVELlnETEKYKLDSLQTRQQMEK---DRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVY 3427
Cdd:TIGR02168 394 QIASLNNEIERL--EARLERLEDRRERLQQEIeelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330
....*....|....*..
gi 22538387 3428 KLDLEGQRLQGIMQEFQ 3444
Cdd:TIGR02168 472 EAEQALDAAERELAQLQ 488
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
505-769 |
4.97e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 4.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 505 TNSQKEKLKEELGLILEEKCALQRQLEDlveelSFSREQIQRARQtiaEQESKLNEAHKSLSTVEdlkaeivsaSESRKE 584
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQE-----KFEKMEQERLRQ---EKEEKAREVERRRKLEE---------AEKARQ 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 585 LELKHEAEVTNYKIKLEMlekEKNAVLDRM-AESQEAELERLRTQLLFSHEEELSKLkEDLEIEHRINIEKLKDNLGIHY 663
Cdd:pfam17380 327 AEMDRQAAIYAEQERMAM---ERERELERIrQEERKRELERIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 664 KQQIdgLQNEMSQKIETMQFEKDNLITKQ-NQLILEISKLKDLQQSlvnsKSEEMTLQINELQKEIEILRQEEKE----K 738
Cdd:pfam17380 403 KVKI--LEEERQRKIQQQKVEMEQIRAEQeEARQREVRRLEEERAR----EMERVRLEEQERQQQVERLRQQEEErkrkK 476
|
250 260 270
....*....|....*....|....*....|....*
gi 22538387 739 GTLEQEVQELQLKTEL----LEKQMKEKENDLQEK 769
Cdd:pfam17380 477 LELEKEKRDRKRAEEQrrkiLEKELEERKQAMIEE 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2039-2432 |
5.27e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2039 ELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQ----L 2114
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkeL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2115 ANHLKEKTDKCSELLLSKEQLQRD-----IQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFgaveakpeLSLEV 2189
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--------LEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2190 Q-LQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkestTRLQELEQEnklfKDDMEKLGLAIKES 2268
Cdd:TIGR02169 836 QeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-------SRLGDLKKE----RDELEAQLRELERK 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2269 damstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSdqecvkrnreee 2348
Cdd:TIGR02169 905 ------------------IEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPEEELS------------ 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2349 IEQLNEVIEKLQQELANIGQkTSMNAHSLSEEA----DSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKETNFKMN 2424
Cdd:TIGR02169 953 LEDVQAELQRVEEEIRALEP-VNMLAIQEYEEVlkrlDELKEKRAKLEEERKAILERIEEYEKK---KREVFMEAFEAIN 1028
|
....*...
gi 22538387 2425 QLTQELFS 2432
Cdd:TIGR02169 1029 ENFNEIFA 1036
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
233-628 |
6.70e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 48.97 E-value: 6.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 233 EQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEME- 311
Cdd:pfam05557 48 DRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELEl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 312 --QDKKVENSNkEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQiVQKNQEIKNMKLELTNSKQKER- 388
Cdd:pfam05557 128 qsTNSELEELQ-ERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQ-EQDSEIVKNSKSELARIPELEKe 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 389 --QSSEEIKQLMGTVE--ELQKRNHKDSQFETDIVQRMEQET---QRKLEQLRAELDEMygQQIVQMKQELIRQHMAQME 461
Cdd:pfam05557 206 leRLREHNKHLNENIEnkLLLKEEVEDLKRKLEREEKYREEAatlELEKEKLEQELQSW--VKLAQDTGLNLRSPEDLSR 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 462 EMKTRHKGEMENALRSYS----------NITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLE 531
Cdd:pfam05557 284 RIEQLQQREIVLKEENSSltssarqlekARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 532 DLVEELSFSR-------------EQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELELKHEA-----EV 593
Cdd:pfam05557 364 SYDKELTMSNyspqllerieeaeDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPsyskeEV 443
|
410 420 430
....*....|....*....|....*....|....*
gi 22538387 594 TNYKIKLEMLEKEkNAVLDRMAESQEAELERLRTQ 628
Cdd:pfam05557 444 DSLRRKLETLELE-RQRLREQKNELEMELERRCLQ 477
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
356-788 |
7.02e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 7.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 356 DKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKR--NHKDSQFETDIVQRMEQeTQRKLEQL 433
Cdd:COG5022 809 RKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRfsLLKKETIYLQSAQRVEL-AERQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 434 RAELDEM-----YGQQIVQMKQELIRQHMAQME---EMKTRHKGEMENALRsysNITVNEDQIKlmNVAINELNIKLQDT 505
Cdd:COG5022 888 KIDVKSIsslklVNLELESEIIELKKSLSSDLIenlEFKTELIARLKKLLN---NIDLEEGPSI--EYVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 506 NSQKEKLKEELGLILEekcalqrQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVS-ASESRKE 584
Cdd:COG5022 963 ESKLKETSEEYEDLLK-------KSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAElQSASKII 1035
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 585 LElkheaEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNlgihyk 664
Cdd:COG5022 1036 SS-----ESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVT------ 1104
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 665 qQIDGLQNEMSQKIETMQFEKDNLITKQNQLILeiSKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQE 744
Cdd:COG5022 1105 -NRNLVKPANVLQFIVAQMIKLNLLQEISKFLS--QLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKR 1181
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 22538387 745 ---VQELQLKTELLEKQMKEKENDLQEKFaQLEAENSILKDEKKTLE 788
Cdd:COG5022 1182 lyqSALYDEKSKLSSSEVNDLKNELIALF-SKIFSGWPRGDKLKKLI 1227
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1585-2362 |
7.40e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1585 EQLEDMRQELVRQYQEHQQatellrqahmrQMERQREDQEQLQEEIKRLNRQLaQRSSIDNENLVSERERVLLEELEALK 1664
Cdd:TIGR02168 361 EELEAELEELESRLEELEE-----------QLETLRSKVAQLELQIASLNNEI-ERLEARLERLEDRRERLQQEIEELLK 428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1665 QLSLAGREklccELRNSSTQTQNGNENQGEVEEQTFKEKELDRKPEDVPPEILSNERYALQKANNRllkilLEVVKTTAA 1744
Cdd:TIGR02168 429 KLEEAELK----ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR-----LDSLERLQE 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1745 VEETIGRHVLGILDRSSKSQSSASLIW-----RSEAEASVKSCVHEEHTRVTDESIPSYsgsdmprndINMWSKVTEEGT 1819
Cdd:TIGR02168 500 NLEGFSEGVKALLKNQSGLSGILGVLSelisvDEGYEAAIEAALGGRLQAVVVENLNAA---------KKAIAFLKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1820 ELSQRLVRSGFAGTEIDPENEELMLNISSRLQAA--VEKLLEAISET-SSQLEHAKVTQTelmresfrqKQEATESLKcq 1896
Cdd:TIGR02168 571 GRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAkdLVKFDPKLRKAlSYLLGGVLVVDD---------LDNALELAK-- 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1897 eelrerlheESRAREQLAV---ELSKAEGVIDGYADEKTLferQIQEKTDIIDRLEQELlcasnrlqeleaeqqqiqeer 1973
Cdd:TIGR02168 640 ---------KLRPGYRIVTldgDLVRPGGVITGGSAKTNS---SILERRREIEELEEKI--------------------- 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1974 ellsrqkEAMKAEAgpveqqllQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQ 2053
Cdd:TIGR02168 687 -------EELEEKI--------AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2054 QNQALEKQLEKMRKFLDEQAIDREhERDVFQQEIQKLEQQlkvvprfqpisehqtreVEQLANHLKEKTDKCSELLLSKE 2133
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQ-----------------IEQLKEELKALREALDELRAELT 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2134 QLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQL 2212
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED----IESLAAEIeELEELIEELESELEALLNERASLEEAL 889
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2213 EQFREELENKNEEVQqlhmQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEV 2292
Cdd:TIGR02168 890 ALLRSELEELSEELR----ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 2293 EIDQLNEQVTKLQQQLK-ITTDN----KVIEEKNELIRDLETQIEclmsDQECVKRNREEEIEQLNEVIEKLQQE 2362
Cdd:TIGR02168 966 DEEEARRRLKRLENKIKeLGPVNlaaiEEYEELKERYDFLTAQKE----DLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1984-2441 |
7.53e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.88 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1984 KAEAGPVEQ-----QLLQETEKLMKEKLEVQCQAEKVRDDL----------QKQVKALEIDVEEQVSRFIELEQEKNTEL 2048
Cdd:PRK02224 199 KEEKDLHERlngleSELAELDEEIERYEEQREQARETRDEAdevleeheerREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2049 MDLRQQNQALEKQLEKMRKFLDEQAIDR------EHERDVFQQEIQKLEQQLK----VVPRFQPISEHQTREVEQLANHL 2118
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDadaeavEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2119 KEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFgAVEAKPEL-----SLEVQLQA 2193
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE-LREERDELrereaELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2194 ERDAIDRKEK---------------------EITNLEEQLEQFREELENKNEEVQQLHMQLEIQK--KESTTRLQELEQE 2250
Cdd:PRK02224 438 ARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2251 nklfKDDMEKLgLAIKESdamstqdqhvlfgkfaqIIQEKEVEIDQLNEQVTKL-----QQQLKITTDNKVIEEKNELIR 2325
Cdd:PRK02224 518 ----REDLEEL-IAERRE-----------------TIEEKRERAEELRERAAELeaeaeEKREAAAEAEEEAEEAREEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2326 DLETQIECLMSDQECVKRNRE--EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSlKHQLdvviAEKLAlEQQVE 2403
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTllAAIADAEDEIERLREKREALAELNDERRERLAEKRER-KREL----EAEFD-EARIE 649
|
490 500 510
....*....|....*....|....*....|....*...
gi 22538387 2404 TANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVE 2441
Cdd:PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE 687
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
148-563 |
8.45e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 8.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 148 QGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYGT-EGLQQLQEFEAAIKQRDGIITQLTANLQQARREkdetMR 226
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQLLPLYQELEALEAELAELPERLEELEER----LE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 227 EFLELTEQSQKLQIQFQQLQAS-ETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKI 305
Cdd:COG4717 157 ELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 306 KVYEMEQdkkvENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQ 385
Cdd:COG4717 237 EAAALEE----RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 386 KERQSSEEIKQLMG--------TVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHM 457
Cdd:COG4717 313 LEELEEEELEELLAalglppdlSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 458 AQMEEMKTRHK-GEMENALRSYSNitvnEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEE 536
Cdd:COG4717 393 QAEEYQELKEElEELEEQLEELLG----ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
410 420
....*....|....*....|....*..
gi 22538387 537 lsfsrEQIQRARQTIAEQESKLNEAHK 563
Cdd:COG4717 469 -----GELAELLQELEELKAELRELAE 490
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
454-1198 |
9.28e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 9.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 454 RQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTNSQKEKLK--EELGLILEEKCA------ 525
Cdd:PTZ00121 1063 KAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARKAedarka 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 526 --LQRQLEDLVEELSFSREQIQRARQT-IAEQESKLNEAHKSLstvedlkaEIVSASESRKELELKHEAEVTNYkiklem 602
Cdd:PTZ00121 1143 eeARKAEDAKRVEIARKAEDARKAEEArKAEDAKKAEAARKAE--------EVRKAEELRKAEDARKAEAARKA------ 1208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 603 lEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEhriNIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQ 682
Cdd:PTZ00121 1209 -EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE---EIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 683 FEKdnlitkqnqlilEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKgtleQEVQELQLKTEllEKQMKEK 762
Cdd:PTZ00121 1285 KAE------------EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK----KKADAAKKKAE--EAKKAAE 1346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 763 ENDLQEKFAQLEAENSILK---DEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSvweKEIEILIEENEDLKQQCIQL 839
Cdd:PTZ00121 1347 AAKAEAEAAADEAEAAEEKaeaAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED---KKKADELKKAAAAKKKADEA 1423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 840 NEEIEKQRNTFSFAEKNFEVNYQElqeeyacllKVKDDLEDSKNKQELEYKSKLKALNEELhlqrinpttvKMKSsvfdE 919
Cdd:PTZ00121 1424 KKKAEEKKKADEAKKKAEEAKKAD---------EAKKKAEEAKKAEEAKKKAEEAKKADEA----------KKKA----E 1480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 920 DKTFVAETLEMGEVVEKDTTELMEKLEVTKR----EKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLR-C 994
Cdd:PTZ00121 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKadeaKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKkA 1560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 995 RELEIIINHNRAENVQSCDTQVSSLLDGVVTMTSRGAEGSVSKVNKSFGEESKIMVEDKVSFENMTVGEESKQEQLILDH 1074
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1075 LPSVTKESSLRATQPSENDKLQKELNVLKSEQN-----DLRLQMEAQRICLSLVY-----STHVDQVREYMENEKDKALC 1144
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkkaeEAKKAEEDEKKAAEALKkeaeeAKKAEELKKKEAEEKKKAEE 1720
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538387 1145 SLK---------EELIFAQEEKIKELQKIHQLELQTMKTQETGDEGKPLHLLIGKLQKAVSEE 1198
Cdd:PTZ00121 1721 LKKaeeenkikaEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2208-2443 |
9.35e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 9.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2208 LEEQLEQFREELENK----NEEVQQLHMQLEiqkkESTTRLQELEQENKLFkDDMEKLGLAIKESDAMSTQdqhvlfgkf 2283
Cdd:COG3206 162 LEQNLELRREEARKAleflEEQLPELRKELE----EAEAALEEFRQKNGLV-DLSEEAKLLLQQLSELESQ--------- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2284 aqiIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSD-QECVKRNREE--EIEQLNEVIEKLQ 2360
Cdd:COG3206 228 ---LAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAElAELSARYTPNhpDVIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2361 QELANIGQKTsmnahslseeADSLKHQLDVVIAEKLALEQQVETANEEMTfmknvlketnfKMNQLTQELFSLKRERESV 2440
Cdd:COG3206 305 AQLQQEAQRI----------LASLEAELEALQAREASLQAQLAQLEARLA-----------ELPELEAELRRLEREVEVA 363
|
...
gi 22538387 2441 EKI 2443
Cdd:COG3206 364 REL 366
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
577-792 |
1.07e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 577 SASESRKELElKHEAEVTNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEiEHRINIEKLK 656
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 657 dnlgihykQQIDGLQNEMSQKIETMQ----FEKDNLITKQNQLILEISKLKDLQQslVNSKSEEMTLQINELQKEIEILR 732
Cdd:COG4942 97 --------AELEAQKEELAELLRALYrlgrQPPLALLLSPEDFLDAVRRLQYLKY--LAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 733 QE-EKEKGTLEQEVQELQLKTELLEKQMKEKE---NDLQEKFAQLEAENSILKDEKKTLEDMLK 792
Cdd:COG4942 167 AElEAERAELEALLAELEEERAALEALKAERQkllARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3083-3362 |
1.11e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3083 QKADRRSLLSEIQALHAQMNGRKITLKR-EQESEKPSQEL--LEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKM 3159
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELsdASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3160 VVAELKSELAQTKLELETTLKAQHKHLKELEAF-----RLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLgRS 3234
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3235 EERDKEELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSS 3314
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3315 TLDRERELHAQLQSSDGTGQSR------------PPLPSEDLLKELQKQLEEKHSRIVEL 3362
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEElseiedpkgedeEIPEEELSLEDVQAELQRVEEEIRAL 970
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1999-2457 |
1.17e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1999 EKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLR-QQNQALEKQLEKMRKFLDEQAIDRE 2077
Cdd:pfam12128 397 DKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKlRLNQATATPELLLQLENFDERIERA 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2078 HE----RDVFQQEIQKLEQQLKvvPRFQPISEHQTREvEQLANHLKEKTDKCSELLLSK-----EQLQRDIQERNEEIEK 2148
Cdd:pfam12128 477 REeqeaANAEVERLQSELRQAR--KRRDQASEALRQA-SRRLEERQSALDELELQLFPQagtllHFLRKEAPDWEQSIGK 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2149 LefrvreLEQALLVSADTFQKVED------------RKHFGAVEAKPELSLEVQLQAERD----AIDRKEKEITNLEEQL 2212
Cdd:pfam12128 554 V------ISPELLHRTDLDPEVWDgsvggelnlygvKLDLKRIDVPEWAASEEELRERLDkaeeALQSAREKQAAAEEQL 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2213 EQFREELEN-------------------------KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKE 2267
Cdd:pfam12128 628 VQANGELEKasreetfartalknarldlrrlfdeKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2268 -----SDAMSTQDQHV---LFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNEL-----IRDLETQIECL 2334
Cdd:pfam12128 708 qkreaRTEKQAYWQVVegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAklkreIRTLERKIERI 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2335 MSDQECVKR--------------NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAE------ 2394
Cdd:pfam12128 788 AVRRQEVLRyfdwyqetwlqrrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENlrglrc 867
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 2395 ------KLALEQQVETANEEMTFMKNVLKEtnfkmnqltqelFSLKRERESvEKIQSIPENSVNVAIDH 2457
Cdd:pfam12128 868 emsklaTLKEDANSEQAQGSIGERLAQLED------------LKLKRDYLS-ESVKKYVEHFKNVIADH 923
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2031-2268 |
1.30e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 48.00 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2031 EEQVSRFIELEQEKNTE-LMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtR 2109
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE-------------E 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2110 EVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLE-------------------FRVRE--LEQALLVSADTFQ 2168
Cdd:PRK05771 94 ELEKIEKEIKELEEEISEL----ENEIKELEQEIERLEPWGnfdldlslllgfkyvsvfvGTVPEdkLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2169 KVEDRKH-------FGAVEAKPELS--------LEVQLQAER---DAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH 2230
Cdd:PRK05771 170 EYISTDKgyvyvvvVVLKELSDEVEeelkklgfERLELEEEGtpsELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 22538387 2231 MQ----LEIQKKESTTRLQELEqENKLF-------KDDMEKLGLAIKES 2268
Cdd:PRK05771 250 LAlyeyLEIELERAEALSKFLK-TDKTFaiegwvpEDRVKKLKELIDKA 297
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
2011-2308 |
1.35e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2011 QAEKVrDDLQKQVKALEIDVEEQVsrfiELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 2087
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2088 QKLE--QQLKVVP------------RFQPISEHQTREVEQLANHL------KEKTDKCSELLLS--------------KE 2133
Cdd:COG3096 420 QALEkaRALCGLPdltpenaedylaAFRAKEQQATEEVLELEQKLsvadaaRRQFEKAYELVCKiageversqawqtaRE 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2134 QLQ--RDIQERNEEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKPELSleVQLQAERDAIDrkekEITNLEEQ 2211
Cdd:COG3096 500 LLRryRSQQALAQRLQQLRAQLAELEQRL------------RQQQNAERLLEEFC--QRIGQQLDAAE----ELEELLAE 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2212 LEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL-------GLAIKESDAMSTQDQHVLfgkfa 2284
Cdd:COG3096 562 LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALerlreqsGEALADSQEVTAAMQQLL----- 636
|
330 340
....*....|....*....|....*.
gi 22538387 2285 qiIQEKEVEI--DQLNEQVTKLQQQL 2308
Cdd:COG3096 637 --EREREATVerDELAARKQALESQI 660
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2188-2410 |
1.56e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2188 EVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI-- 2265
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAra 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2266 --KESDAMSTQDQHVLFGKFAQIIQEKEVeIDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECLMSDQECVKR 2343
Cdd:COG3883 95 lyRSGGSVSYLDVLLGSESFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22538387 2344 NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMT 2410
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1583-2362 |
1.62e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1583 NEEQLEDMRQELVRQyqehqqatellrqahMRQMERQREDQEQ---LQEEIKRLNRQLAQRssidnenlvseRERVLLEE 1659
Cdd:COG1196 187 NLERLEDILGELERQ---------------LEPLERQAEKAERyreLKEELKELEAELLLL-----------KLRELEAE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1660 LEALKQlslagreklccelrnssTQTQNGNENQGEVEEQTFKEKELDRkpedvppeilsnERYALQKANNRLLKILLEVV 1739
Cdd:COG1196 241 LEELEA-----------------ELEELEAELEELEAELAELEAELEE------------LRLELEELELELEEAQAEEY 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1740 KTTAAVEETIGRHVLGILDRSSKSQSSASLIWRSEAEAsvkscvheehtrvtdesipsysgsdmprndinmwskvtEEGT 1819
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELE--------------------------------------EELE 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1820 ELSQRLVRSGFAGTEIDPENEElmlnissrLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEEL 1899
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEE--------AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1900 RERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLcasnRLQELEAEQQQIQEERELLSRQ 1979
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE----ALLELLAELLEEAALLEAALAE 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1980 KEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEqekntELMDLRQQNQALE 2059
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA-----LAAALQNIVVEDD 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2060 KQLEKMRKFLDEQAIdrehERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDI 2139
Cdd:COG1196 557 EVAAAAIEYLKAAKA----GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2140 QERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgavEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREEL 2219
Cdd:COG1196 633 EAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGS------RRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2220 ENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDamstqdqhvlfgkfaqiiqEKEVEIDQLNE 2299
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL-------------------PEPPDLEELER 767
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2300 QVTKLQQQLK----IttDNKVIEEKNEL---IRDLETQIECLmsdqecvkrnrEEEIEQLNEVIEKLQQE 2362
Cdd:COG1196 768 ELERLEREIEalgpV--NLLAIEEYEELeerYDFLSEQREDL-----------EEARETLEEAIEEIDRE 824
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
503-782 |
1.63e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.86 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 503 QDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAEIVSASESR 582
Cdd:pfam01576 204 QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESE 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 583 KELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEaelerLRTQllfsHEEELSKLKEDLEIEHRInieklkdnlgih 662
Cdd:pfam01576 284 RAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQE-----LRSK----REQEVTELKKALEEETRS------------ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 663 YKQQIDGLQNEMSQKIETMQFEKDNliTKQNQLILEISKlkdlqQSLVNskseemtlQINELQKEIEILRQ----EEKEK 738
Cdd:pfam01576 343 HEAQLQEMRQKHTQALEELTEQLEQ--AKRNKANLEKAK-----QALES--------ENAELQAELRTLQQakqdSEHKR 407
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 22538387 739 GTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKD 782
Cdd:pfam01576 408 KKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNE 451
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1855-2602 |
1.70e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1855 EKLLEAISETSSQLEHakvtQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLF 1934
Cdd:pfam02463 173 EALKKLIEETENLAEL----IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1935 ERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELlsrQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEK 2014
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELK---LLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2015 VRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQL 2094
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2095 KVvprfQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRK 2174
Cdd:pfam02463 406 EA----QLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2175 HfgavEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ--LHMQLEIQKKESTTRLQELEQENK 2252
Cdd:pfam02463 482 L----QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLgdLGVAVENYKVAISTAVIVEVSATA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2253 LFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKV------IEEKNELIRD 2326
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRakvvegILKDTELTKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2327 LETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDvVIAEKLALEQQVETAN 2406
Cdd:pfam02463 638 KESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE-IKKKEQREKEELKKLK 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2407 EEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSIPENS--VNVAIDHLSKDKPELEVVLTEDALKSLENQTYFK 2484
Cdd:pfam02463 717 LEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEekEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2485 SFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAV 2564
Cdd:pfam02463 797 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKE 876
|
730 740 750
....*....|....*....|....*....|....*...
gi 22538387 2565 QEYAKFCQDNQTISSEPERTNIQNLNQLREDELGSDIS 2602
Cdd:pfam02463 877 EELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEE 914
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1783-2157 |
2.27e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1783 VHEEHTRVTDESIPSYSGSDMPRND-INMWSKVTEEGTELSQRLVRSGFAGTE---IDPENEELMLNISSRlqaavEKLL 1858
Cdd:pfam17380 245 LAEDVTTMTPEYTVRYNGQTMTENEfLNQLLHIVQHQKAVSERQQQEKFEKMEqerLRQEKEEKAREVERR-----RKLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1859 EAisETSSQLEHAKvtQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVidgyadEKTLFERQI 1938
Cdd:pfam17380 320 EA--EKARQAEMDR--QAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMREL------ERLQMERQQ 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1939 QEktdiiDRLEQELLCAsnrlqeleaeqqqiqeerellsRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQcqaekvrdd 2018
Cdd:pfam17380 390 KN-----ERVRQELEAA----------------------RKVKILEEERQRKIQQQKVEMEQIRAEQEEAR--------- 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2019 lQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQ 2093
Cdd:pfam17380 434 -QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEErkqamIEEE 512
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 2094 LKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELE 2157
Cdd:pfam17380 513 RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
484-738 |
2.48e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 484 NEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK 563
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 564 SLSTVedLKAEIVSASESRKELELKHEAEVTNYKiklemlekeKNAVLDRMAESQEAELERLRTQLlfsheEELSKLKED 643
Cdd:COG4942 105 ELAEL--LRALYRLGRQPPLALLLSPEDFLDAVR---------RLQYLKYLAPARREQAEELRADL-----AELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 644 LEIEhrinieklkdnlgihyKQQIDGLQNEMSQKIETMQfekdNLITKQNQLILEISKLKDLQQslvnSKSEEMTLQINE 723
Cdd:COG4942 169 LEAE----------------RAELEALLAELEEERAALE----ALKAERQKLLARLEKELAELA----AELAELQQEAEE 224
|
250
....*....|....*
gi 22538387 724 LQKEIEILRQEEKEK 738
Cdd:COG4942 225 LEALIARLEAEAAAA 239
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1911-2446 |
2.64e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1911 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQEleaeqqqiqeerellsrqkeaMKAEAGPV 1990
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ---------------------LKSEISDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1991 EQQLLQETEKLMKEKLEVQcqaEKVRDDLQKQVKaleiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfld 2070
Cdd:TIGR04523 301 NNQKEQDWNKELKSELKNQ---EKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN--- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2071 eQAIDREHERDVFQQEIQKLEQQLKVVprfqpisEHQTREVEQLAnhlKEKTDKCSELLLSKEQLQRDIQERNEEIEKLE 2150
Cdd:TIGR04523 371 -EIEKLKKENQSYKQEIKNLESQINDL-------ESKIQNQEKLN---QQKDEQIKKLQQEKELLEKEIERLKETIIKNN 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2151 FRVRELEQALLVSADTFQKVEDRKhfgaveakpelslevqlQAERDAIDRKEKEITNLEEQLEQFREELENKNEEvqqlH 2230
Cdd:TIGR04523 440 SEIKDLTNQDSVKELIIKNLDNTR-----------------ESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE----L 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2231 MQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKesdamstqdqhvlfgkfaqiiqEKEVEIDQLNEQVTKLQQQLKI 2310
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKK----------------------EKESKISDLEDELNKDDFELKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2311 TTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDV 2390
Cdd:TIGR04523 557 ENLEKEIDEKNKEIEELKQTQKSLKKKQE----EKQELIDQKEKEKKDLIKEIEEKEKKIS----SLEKELEKAKKENEK 628
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 2391 VIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLtqelfsLKRERESVEKIQSI 2446
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI------IKKIKESKTKIDDI 678
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
525-764 |
2.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 525 ALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKELElkheAEVTNYKIKLEMLE 604
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL---AALERRIAALARRIRALE----QELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 605 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQnemsQKIETMQFE 684
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELR----ADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 685 KDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLqINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKEN 764
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKL-LARLEKELAELAAELAE---LQQEAEELEALIARLEAEAAAAAE 241
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
526-733 |
2.84e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 526 LQRQLEDLVEELSFSREQIQRARQTIAEQESKLN---EAHKSLSTVEDLKAEIVSASESRKELElKHEAEVTNYKIKLEM 602
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEefrQKNGLVDLSEEAKLLLQQLSELESQLA-EARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 603 LEKEKNAVLDRMAE-SQEAELERLRTQLLfSHEEELSKLKEDLEIEH--RINIEKLKDNLGIHYKQQIDGLQNEMSQKIE 679
Cdd:COG3206 245 LRAQLGSGPDALPElLQSPVIQQLRAQLA-ELEAELAELSARYTPNHpdVIALRAQIAALRAQLQQEAQRILASLEAELE 323
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 22538387 680 TMQFEKDNLITKQNQLILEISKLKDLQQslvnskseemtlQINELQKEIEILRQ 733
Cdd:COG3206 324 ALQAREASLQAQLAQLEARLAELPELEA------------ELRRLEREVEVARE 365
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2189-2366 |
2.97e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2189 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI--K 2266
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2267 ESDAMSTQdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIECLMSDQECVKRNRE 2346
Cdd:COG1579 90 EYEALQKE------------IESLKRRISDLEDEILELMER---------IEELEEELAELEAELAELEAELEEKKAELD 148
|
170 180
....*....|....*....|
gi 22538387 2347 EEIEQLNEVIEKLQQELANI 2366
Cdd:COG1579 149 EELAELEAELEELEAEREEL 168
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
700-899 |
3.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 700 SKLKDLQQSLvnsksEEMTLQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSI 779
Cdd:COG4942 27 AELEQLQQEI-----AELEKELAALKKEEKALLKQLAA---LERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 780 LKDEKKTLEDMLKIHTPVSQEERLIFLDSIKSKSKDSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEV 859
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 22538387 860 NYQELQEEYACLLKVKDD---LEDSKNKQELEYKSKLKALNEE 899
Cdd:COG4942 179 LLAELEEERAALEALKAErqkLLARLEKELAELAAELAELQQE 221
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2132-2253 |
3.61e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2132 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQ 2211
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL------------DRKLELLEKR-----EEELEKKEKELEQKQQELEKKEEE 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 22538387 2212 LEQFREELENKNEEVQQL------HMQLEIQKKESTT----RLQELEQENKL 2253
Cdd:PRK12704 133 LEELIEEQLQELERISGLtaeeakEILLEKVEEEARHeaavLIKEIEEEAKE 184
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
489-776 |
3.82e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 489 KLMNVAINELNikLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSF---SREQIQRARQTIAEQ------ESKLN 559
Cdd:COG3206 94 PVLERVVDKLN--LDEDPLGEEASREAAIERLRKNLTVEPVKGSNVIEISYtspDPELAAAVANALAEAyleqnlELRRE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 560 EAHKSLSTVEDLKAEIvsasesRKELELKhEAEVTNYKIK--LEMLEKEKNAVLDRMAESqEAELERLRTQLLfSHEEEL 637
Cdd:COG3206 172 EARKALEFLEEQLPEL------RKELEEA-EAALEEFRQKngLVDLSEEAKLLLQQLSEL-ESQLAEARAELA-EAEARL 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 638 SKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQL-ILEISKLKDLQQSLVNSKSEE 716
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIaALRAQLQQEAQRILASLEAEL 322
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22538387 717 MTL--QINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMkekeNDLQEKFAQLEAE 776
Cdd:COG3206 323 EALqaREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEARLA 380
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
3066-3246 |
3.85e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 3.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3066 QRIQEQGVEYQAAMECLQKADRrsllsEIQALHAQMNGRKITLKREQesekpsQELLEYNIQQKQSQMLEMQVELSSMKD 3145
Cdd:COG4913 255 EPIRELAERYAAARERLAELEY-----LRAALRLWFAQRRLELLEAE------LEELRAELARLEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3146 RATELQEQLSSEKMV-VAELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWAL 3224
Cdd:COG4913 324 ELDELEAQIRGNGGDrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|..
gi 22538387 3225 EKEKAKLGRSEERDKEELEDLK 3246
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELE 425
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2176-2406 |
4.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 4.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2176 FGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQE-- 2250
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIralEQELAALEAELAELEKEia 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2251 --NKLFKDDMEKLGLAIKESDAMSTQDQHVLF---GKFAQIIQEKEVeIDQLNEQVTKLQQQLKITTDNkvIEEKNELIR 2325
Cdd:COG4942 94 elRAELEAQKEELAELLRALYRLGRQPPLALLlspEDFLDAVRRLQY-LKYLAPARREQAEELRADLAE--LAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2326 DLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETA 2405
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 22538387 2406 N 2406
Cdd:COG4942 247 G 247
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
160-406 |
4.62e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 4.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 160 MESELAGKQHEIEELNRELEEMRVTYGTEGLQ-------------QLQEFEAAIKQRDGIITQLTANLQQARREKDETMR 226
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNEIEKLKKEnqsykqeiknlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 227 EFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIK 306
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 307 vyEMEQDKKVENSNKEEIQEKetiIEELNTKIIEEEKKTLELKDKLTTADKLL--GELQEQIVQKNQEIKNMKLELTNSK 384
Cdd:TIGR04523 507 --ELEEKVKDLTKKISSLKEK---IEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLK 581
|
250 260
....*....|....*....|..
gi 22538387 385 QKERQSSEEIKQLMGTVEELQK 406
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIK 603
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
148-768 |
4.81e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 148 QGAQDSPTHLEMMESELAGKQHEIE--------------ELNRELEEMRVTYGTEGlqqlQEFEAAIKQRDGIITQLTAN 213
Cdd:pfam01576 15 QKVKERQQKAESELKELEKKHQQLCeeknalqeqlqaetELCAEAEEMRARLAARK----QELEEILHELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 214 LQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQilthQQQLEEQDHLLEDyqkKKED 293
Cdd:pfam01576 91 SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQ----NSKLSKERKLLEE---RISE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 294 FTMQISFLQEKIKVYEMEQDKkvensnkeeiqeKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEI 373
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNK------------HEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 374 KNMKLELTnSKQKERQSS---------------EEIKQLMGTVEELQKrnhkdsQFETDIVQRMEQETQRK-----LEQL 433
Cdd:pfam01576 232 AELRAQLA-KKEEELQAAlarleeetaqknnalKKIRELEAQISELQE------DLESERAARNKAEKQRRdlgeeLEAL 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 434 RAEL----DEMYGQQIVQMKQEL------------IRQHMAQMEEMKTRHKG-------EMENALRSYSNITVN----ED 486
Cdd:pfam01576 305 KTELedtlDTTAAQQELRSKREQevtelkkaleeeTRSHEAQLQEMRQKHTQaleelteQLEQAKRNKANLEKAkqalES 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 487 QIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLS 566
Cdd:pfam01576 385 ENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVS 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 567 TVEdlkaeivSASESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAelERLRTQLLFSHEEELSKLKEDLEi 646
Cdd:pfam01576 465 SLE-------SQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEA--KRNVERQLSTLQAQLSDMKKKLE- 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 647 EHRINIEKLKDNLGiHYKQQIDGLQNEMSQKIET----------MQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEE 716
Cdd:pfam01576 535 EDAGTLEALEEGKK-RLQRELEALTQQLEEKAAAydklektknrLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEE 613
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 717 MTLQiNELQKEIEILRQEEKEKGT----LEQEVQELQLKTELLEKQMKEKENDLQE 768
Cdd:pfam01576 614 KAIS-ARYAEERDRAEAEAREKETralsLARALEEALEAKEELERTNKQLRAEMED 668
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
265-785 |
4.96e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 265 QAKQQILTHQQQLEEQDHLLEDYQKKKedFTMQISFLQEKikvyEMEQDKKVENSNKEEI-QEKETIIEELNTKIIEEEK 343
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELEDIK--MSLQRSMSTQK----ALEEDLQIATKTICQLtEEKEAQMEELNKAKAAHSF 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 344 KTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSE-------EIKQLMGTVEELQKRNHKDSQFE- 415
Cdd:pfam05483 350 VVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfknnkevELEELKKILAEDEKLLDEKKQFEk 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 416 -TDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQEliRQHMAQMEEMKTrhkgEMENALRSYSNITVNEDQIKLMNva 494
Cdd:pfam05483 430 iAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSE--EHYLKEVEDLKT----ELEKEKLKNIELTAHCDKLLLEN-- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 495 iNELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLN-EAHKSLSTVEDLKA 573
Cdd:pfam05483 502 -KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKcKLDKSEENARSIEY 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 574 EIVSASESRKELELK---HEAEVTNYKIKLEMLEKEKNAVLDR-MAESQEAELERLRTQLLfshEEELSKLKEDLEiEHR 649
Cdd:pfam05483 581 EVLKKEKQMKILENKcnnLKKQIENKNKNIEELHQENKALKKKgSAENKQLNAYEIKVNKL---ELELASAKQKFE-EII 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 650 INIEKLKDNLGIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQN---QLILEISKLKDLQQSLVNSKSEEMTLQINELQk 726
Cdd:pfam05483 657 DNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHkiaEMVALMEKHKHQYDKIIEERDSELGLYKNKEQ- 735
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 727 eieilrQEEKEKGTLEQEVQELQLKTELLEKQMkEKENDLQEKFAQLEAENSILKDEKK 785
Cdd:pfam05483 736 ------EQSSAKAALEIELSNIKAELLSLKKQL-EIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
252-474 |
5.10e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 5.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 252 RNSTHSSTAADLLQakQQILTHQQQLEEQDHLLEDYQKKKE--DFTMQISFLQEKIKVYEMEQdkkveNSNKEEIQEKET 329
Cdd:COG3206 168 LRREEARKALEFLE--EQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQL-----AEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 330 IIEELNTKIIEEEKKTLELkdkltTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNH 409
Cdd:COG3206 241 RLAALRAQLGSGPDALPEL-----LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538387 410 KDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQI--------VQMKQELIRQHMAQMEEMKTRHKGEMENA 474
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQLEARLAELPELEAelrrlereVEVARELYESLLQRLEEARLAEALTVGNV 388
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2011-2250 |
5.23e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2011 QAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNteLMDLRQQNQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKL 2090
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSE----LESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2091 EQQLKVVPRFQPiSEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSadtfqkv 2170
Cdd:COG3206 246 RAQLGSGPDALP-ELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2171 edrkhfgaveakpelslevqLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTT---RLQEL 2247
Cdd:COG3206 318 --------------------LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESllqRLEEA 377
|
...
gi 22538387 2248 EQE 2250
Cdd:COG3206 378 RLA 380
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2133-2371 |
5.30e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2133 EQLQRDIQERNEEIEKLEfRVRELEQALLVSADTFQKVEDRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQL 2212
Cdd:COG4913 238 ERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFA-----QRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2213 EQFREELENKNEEVQQLHMQLEiqkKESTTRLQELEQEnklfkddmeklglaikesdamstqdqhvlfgkfaqiIQEKEV 2292
Cdd:COG4913 312 ERLEARLDALREELDELEAQIR---GNGGDRLEQLERE------------------------------------IERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2293 EIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIG 2367
Cdd:COG4913 353 ELEERERRRARLEALLAalglpLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
....
gi 22538387 2368 QKTS 2371
Cdd:COG4913 433 RRKS 436
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
634-996 |
5.52e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 634 EEELSKLKEDLEiEHRINIEKlkdnlgihykqqIDGLQNEMSQKIETMQFEKDNLItkqnqlileisKLKDLQQSLVNSK 713
Cdd:TIGR02169 169 DRKKEKALEELE-EVEENIER------------LDLIIDEKRQQLERLRREREKAE-----------RYQALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 714 SEEMTLQINELQKEIEilrQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSilkDEKKTL-EDMLK 792
Cdd:TIGR02169 225 GYELLKEKEALERQKE---AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---EEQLRVkEKIGE 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 793 IHTPVSQEERLIflDSIKSKSKDSvwEKEIEILIEENEDLKQQCIQLNEEIEKQR-------NTFSFAEKNFEVNYQELQ 865
Cdd:TIGR02169 299 LEAEIASLERSI--AEKERELEDA--EERLAKLEAEIDKLLAEIEELEREIEEERkrrdkltEEYAELKEELEDLRAELE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 866 EE-------YACLLKVKDDLEDSKNKQElEYKSKLKALNEELHLQRINPTTVKMKSSVFDEDKT-FVAETLEMGEVVEKD 937
Cdd:TIGR02169 375 EVdkefaetRDELKDYREKLEKLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINeLEEEKEDKALEIKKQ 453
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 938 TTELMEklevTKREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRE 996
Cdd:TIGR02169 454 EWKLEQ----LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
506-760 |
5.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 506 NSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLstvEDLKAEIVSASESRKEL 585
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL---AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 586 ELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHeeelsklkedLEIEHRINIEKLKDNLgihykQ 665
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY----------LAPARREQAEELRADL-----A 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 666 QIDGLQnemsQKIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEemtlQINELQKEIEILRQEEKEkgtLEQEV 745
Cdd:COG4942 161 ELAALR----AELEAERAELEALLAELEEERAALEALKAERQKLLARLEK----ELAELAAELAELQQEAEE---LEALI 229
|
250
....*....|....*
gi 22538387 746 QELQLKTELLEKQMK 760
Cdd:COG4942 230 ARLEAEAAAAAERTP 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3074-3429 |
5.64e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3074 EYQAAMECLQKADRRSLLSEIQALHAQMNGRKITLKREQESEKPSQElleynIQQKQSQMLEMQVELSSMKDRATELQEQ 3153
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE-----AAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3154 LSSEKMVVAELKSELAQTKLELETTLKAQHKHLKELEAfRLEVKDKTDEVhllnDTLASEQKKSREL-QWALEKEKAKLG 3232
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK-AAAAKKKADEA----KKKAEEKKKADEAkKKAEEAKKADEA 1449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3233 RSEERDKEELEDLKFSLESQKQRNL-----QLNLLLEQQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQvlLESEKV 3307
Cdd:PTZ00121 1450 KKKAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA--KKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3308 RIREMSSTLDRERELHaQLQSSDGTGQSRPPLPSEDLLKELQKQLEEKHS----RIVELLNETEKYKLDSLQTRQQMEKD 3383
Cdd:PTZ00121 1528 KKAEEAKKADEAKKAE-EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKnmalRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 22538387 3384 RQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQVYKL 3429
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
3213-3445 |
5.90e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3213 EQKKSRELQWALEKEKAKLGRSEERDKE-----ELEDLKFSLESQKQRNLQLNLLLEQQKQLLNESQQKIESQRMLYDAQ 3287
Cdd:pfam17380 305 KEEKAREVERRRKLEEAEKARQAEMDRQaaiyaEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3288 LSEEQGRNLELQVLLESEKVRIREMsstlDRERELHAQLQSSDGTGQSRpplpsEDLLKELQKQLEEKHSRivellnETE 3367
Cdd:pfam17380 385 MERQQKNERVRQELEAARKVKILEE----ERQRKIQQQKVEMEQIRAEQ-----EEARQREVRRLEEERAR------EME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3368 KYKLDSLQTRQQMEKDRQ--VHRKTLQTEQEANTEGQKKMHELQSKVedLQRQLEEKRQQVYKLDLEGQRLQGIMQEFQK 3445
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQqeEERKRKKLELEKEKRDRKRAEEQRRKI--LEKELEERKQAMIEEERKRKLLEKEMEERQK 527
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
309-770 |
7.00e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 309 EMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLG--ELQEQIVQKNQEIKNMKLELTNSKQK 386
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 387 ErqssEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEmygqqiVQMKQELIRQHMAQMEEMKTR 466
Cdd:COG4717 155 L----EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE------LQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 467 HKGEMENALRSYSNITVNE--DQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQI 544
Cdd:COG4717 225 LEEELEQLENELEAAALEErlKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 545 QRARQTIAE---QESKLNEAHKSLSTVEDLKAEIVSASESRKE--LELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQE 619
Cdd:COG4717 305 EELQALPALeelEEEELEELLAALGLPPDLSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 620 AELERLRTQL--LFSHEEELSKLKEDLEIEHRINIEKLKDNLGIHYKQQIDGLQnemsQKIETMQFEKDNLITKQNQLIL 697
Cdd:COG4717 385 EELRAALEQAeeYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELE----EELEELEEELEELREELAELEA 460
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538387 698 EISKLKDLQqslvnskseemtlQINELQKEIEILRQEEKEkgtLEQEVQELQLKTELLEKQMKEKENDLQEKF 770
Cdd:COG4717 461 ELEQLEEDG-------------ELAELLQELEELKAELRE---LAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3145-3425 |
7.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3145 DRATELQEQLSsekmvvaELKSELAQTKLELETTLKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQwal 3224
Cdd:COG4942 20 DAAAEAEAELE-------QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3225 eKEKAKLGRSEERDKEELedlkfslesqkqrnlqlnllleqqkqllnesqqkiesQRMLYDAQLSeeqGRNLELQVLLES 3304
Cdd:COG4942 90 -KEIAELRAELEAQKEEL-------------------------------------AELLRALYRL---GRQPPLALLLSP 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3305 EK----VRIREMSSTLDRERELHAQLQSSDgtgqsrpplpsEDLLKELQKQLEEKHSRIVELLNETEkykldslQTRQQM 3380
Cdd:COG4942 129 EDfldaVRRLQYLKYLAPARREQAEELRAD-----------LAELAALRAELEAERAELEALLAELE-------EERAAL 190
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 22538387 3381 EKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQ 3425
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
301-586 |
8.42e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 301 LQEKIKVYEMEQDKKVENSNKEEI-QEKETIIEELNT--KIIEEEKKTLELKDKLTTadkLLGELQEQIVQKNQEIKNMK 377
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLrQEKEEKAREVERrrKLEEAEKARQAEMDRQAA---IYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 378 LElTNSKQKERQSSEEIKQLMGTVEELQK----RNHKDSQFETDI-----VQRMEQETQRK-------LEQLRAELDEMY 441
Cdd:pfam17380 355 QE-ERKRELERIRQEEIAMEISRMRELERlqmeRQQKNERVRQELeaarkVKILEEERQRKiqqqkveMEQIRAEQEEAR 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 442 GQQIVQMK------------QELIRQH----MAQMEEMKTRHKGEMENALRSYSNItvNEDQIKLMNVAINELNIKLQDT 505
Cdd:pfam17380 434 QREVRRLEeeraremervrlEEQERQQqverLRQQEEERKRKKLELEKEKRDRKRA--EEQRRKILEKELEERKQAMIEE 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 506 NSQKEKLKEELGlilEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVE---DLKAEIVSASESR 582
Cdd:pfam17380 512 ERKRKLLEKEME---ERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMErerEMMRQIVESEKAR 588
|
....
gi 22538387 583 KELE 586
Cdd:pfam17380 589 AEYE 592
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
219-882 |
8.81e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 219 REKDETMREFLELTEQSQKLQIQFQQLQASETLRNSTHsstAADLLQAKQQILTHQQQ--LEEQDHLLEDYQKKKEDFTM 296
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLK---AEVLIQKFGRSLKAKKRfsLLKKETIYLQSAQRVELAER 882
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 297 QISFLQEKIK----VYEM-EQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTL------ELKDKLTTADKLLGELQEQ 365
Cdd:COG5022 883 QLQELKIDVKsissLKLVnLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLnnidleEGPSIEYVKLPELNKLHEV 962
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 366 IVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQK--RNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQ 443
Cdd:COG5022 963 ESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAElsKQYGALQESTKQLKELPVEVAELQSASKIISSESTEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 444 QIVQMKQELIRQHMaqmeEMKTRHKGEMENALRSYSNITVNEDQIKLMNV------AINELNIKLQDTNSQKEKLKEE-- 515
Cdd:COG5022 1043 SILKPLQKLKGLLL----LENNQLQARYKALKLRRENSLLDDKQLYQLEStenllkTINVKDLEVTNRNLVKPANVLQfi 1118
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 516 ------LGLILEEK-----------------CALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHK-----SLST 567
Cdd:COG5022 1119 vaqmikLNLLQEISkflsqlvntlepvfqklSVLQLELDGLFWEANLEALPSPPPFAALSEKRLYQSALYDeksklSSSE 1198
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 568 VEDLKAEIVS-ASESRKELELKHE-----AEVTNYKIKLEMLeKEKNAVLDRMAESQEAELERLRTQLLfSHEEELSKLK 641
Cdd:COG5022 1199 VNDLKNELIAlFSKIFSGWPRGDKlkkliSEGWVPTEYSTSL-KGFNNLNKKFDTPASMSNEKLLSLLN-SIDNLLSSYK 1276
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 642 EDLEIEHRInieklkdnlgihykqqidglQNEMSQKIETMQFekDNLITKQNQLILEISKLKDLQQSLVNSKSEEMtlQI 721
Cdd:COG5022 1277 LEEEVLPAT--------------------INSLLQYINVGLF--NALRTKASSLRWKSATEVNYNSEELDDWCREF--EI 1332
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 722 NELQKEIEilrqeekekgTLEQEVQELQLKtellekqmKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEe 801
Cdd:COG5022 1333 SDVDEELE----------ELIQAVKVLQLL--------KDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKE- 1393
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 802 rliFLDSIKSKSKDSvwekeieiLIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDS 881
Cdd:COG5022 1394 ---ILKKIEALLIKQ--------ELQLSLEGKDETEVHLSEIFSEEKSLISLDRNSIYKEEVLSSLSALLTKEKIALLDR 1462
|
.
gi 22538387 882 K 882
Cdd:COG5022 1463 K 1463
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
684-1008 |
9.08e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 9.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 684 EKDNLITK-QNQLILEIsklKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQ-LKTELLEKQMKE 761
Cdd:PRK05771 17 YKDEVLEAlHELGVVHI---EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSvKSLEELIKDVEE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 762 KENDLQEKFAQLEAENSILKDEKKTLEdmlkihtpvSQEERLIFLDSikskskdsvwekeieilieenedlkqqciqLNE 841
Cdd:PRK05771 94 ELEKIEKEIKELEEEISELENEIKELE---------QEIERLEPWGN------------------------------FDL 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 842 EIEKQRNTfsfaeKNFEVNYQELQEEYACLLKvkddLEDSKNKQELEYKSKLKALneelhlqrINPTTVKmkssvfdEDK 921
Cdd:PRK05771 135 DLSLLLGF-----KYVSVFVGTVPEDKLEELK----LESDVENVEYISTDKGYVY--------VVVVVLK-------ELS 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 922 TFVAETLEMGEVVEKDTtelmeklevtkREKLELSQRLSDLSEQLKQKHGEISFLNEEVKSLKQEKEQVSLRCRE-LEII 1000
Cdd:PRK05771 191 DEVEEELKKLGFERLEL-----------EEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEyLEIE 259
|
....*...
gi 22538387 1001 INHNRAEN 1008
Cdd:PRK05771 260 LERAEALS 267
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
2025-2310 |
9.13e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 9.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2025 ALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREH--ERDVFQQEIQKLEQQLKvvprf 2100
Cdd:PRK04863 830 AFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalNRLLPRLNllADETLADRVEEIREQLD----- 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2101 qpisehqtrEVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLEFRVRELEQAL-LVSADTF---QKVEDRKHF 2176
Cdd:PRK04863 905 ---------EAEEAKRFVQQHGNALAQL----EPIVSVLQSDPEQFEQLKQDYQQAQQTQrDAKQQAFaltEVVQRRAHF 971
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2177 GAVEAKPELSLEVQLQaerDAIDRKEKEitnLEEQLEQFREELENKNEEVQQLHmQLEIQKKESTTRLQELEQEnklFKD 2256
Cdd:PRK04863 972 SYEDAAEMLAKNSDLN---EKLRQRLEQ---AEQERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQE---LKQ 1041
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 2257 DMEKLGLAI---KESDAMSTQDQ-----HVLFGKFAQI---IQEKEVEIDQLNEQVTKLQQQLKI 2310
Cdd:PRK04863 1042 ELQDLGVPAdsgAEERARARRDElharlSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDYHE 1106
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
154-498 |
9.18e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 9.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 154 PTHLEMMESELAGKQHEIEELnRELEEMRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREfLELTE 233
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEM-LGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE-EESAK 785
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 234 QSQKLQIQFQQLQaSETLRNSTHSSTAADLLQAKQQILTHQQ---QLEEQDHLL-------EDYQKKKEDFTMQISFLQE 303
Cdd:TIGR00606 786 VCLTDVTIMERFQ-MELKDVERKIAQQAAKLQGSDLDRTVQQvnqEKQEKQHELdtvvskiELNRKLIQDQQEQIQHLKS 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 304 KIKVYEMEQDKKVENSNK-----EEIQEKETIIEELNTKIIEEEKKTLELKdklTTADKLLGELQEQIVQKNQEIKNMKL 378
Cdd:TIGR00606 865 KTNELKSEKLQIGTNLQRrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLE---TFLEKDQQEKEELISSKETSNKKAQD 941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 379 ELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHma 458
Cdd:TIGR00606 942 KVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQD-- 1019
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 22538387 459 QMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVAINEL 498
Cdd:TIGR00606 1020 NLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKL 1059
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
170-587 |
9.82e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 170 EIEELNRELEEMRVTYGTEglqqLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQaSE 249
Cdd:TIGR00606 692 ELQEFISDLQSKLRLAPDK----LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLK-ND 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 250 TLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSN----KEEIQ 325
Cdd:TIGR00606 767 IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHEldtvVSKIE 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 326 EKETIIEELNTKIIEEEKKTLELKD---KLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVE 402
Cdd:TIGR00606 847 LNRKLIQDQQEQIQHLKSKTNELKSeklQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 403 ELQKRNHKDSQFETDIVQRMEQETQRK---LEQLRAELDEMYGQQIVQmKQELIRQHMAQMEEMKTRHKGEMENALRSYS 479
Cdd:TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNIhgyMKDIENKIQDGKDDYLKQ-KETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 480 NITVNEDQIKLM--NVAINELNIKLQDTNSQKEKLKEELG--LILEEKCALQRQLEDL-----VEELSFSREQIQRARQT 550
Cdd:TIGR00606 1006 DIDTQKIQERWLqdNLTLRKRENELKEVEEELKQHLKEMGqmQVLQMKQEHQKLEENIdlikrNHVLALGRQKGYEKEIK 1085
|
410 420 430
....*....|....*....|....*....|....*..
gi 22538387 551 IAEQESKLNEAHKSLSTVEDLKAEIVSASESRKELEL 587
Cdd:TIGR00606 1086 HFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDI 1122
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
541-738 |
1.03e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 541 REQIQRARQTIAEQESKlneahkslSTVEDLKAEivsASESRKELELKHEAEVTNYKIKLEMLEKEKNavldrmaesqeA 620
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAK--------RILEEAKKE---AEAIKKEALLEAKEEIHKLRNEFEKELRERR-----------N 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 621 ELERLRTQLLfSHEEELSKLKEDLEIEHRInIEKLKDNLgihykqqidglqNEMSQKIETMQFEKDNLITKQNQLILEIS 700
Cdd:PRK12704 83 ELQKLEKRLL-QKEENLDRKLELLEKREEE-LEKKEKEL------------EQKQQELEKKEEELEELIEEQLQELERIS 148
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 22538387 701 KL--KDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEK 738
Cdd:PRK12704 149 GLtaEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1907-2549 |
1.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1907 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQ----QQIQEERELLSRQKEA 1982
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHayltQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1983 MKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKvrddLQKQVKALEiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQ- 2061
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLEETQERINRARKAAP----LAAHIKAVT-QIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQq 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2062 LEKMRKFLDEQAIDREHERDVFQQEIQK-----LEQQLKVVPRFQPISEHQT--REVEQLANHLKEKTDKCSELLLSKEQ 2134
Cdd:TIGR00618 338 SSIEEQRRLLQTLHSQEIHIRDAHEVATsireiSCQQHTLTQHIHTLQQQKTtlTQKLQSLCKELDILQREQATIDTRTS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2135 LQRDIQE---RNEEIEKLEFRVRELEQALLVSADTFQKVEDRKhfgAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQ 2211
Cdd:TIGR00618 418 AFRDLQGqlaHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH---LQESAQSLKEREQQLQTKEQIHLQETRKKAVVLA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2212 LEQFREELE---NKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL---GLAIKE---SDAMSTQDQHVLFGK 2282
Cdd:TIGR00618 495 RLLELQEEPcplCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVyhqLTSERKqraSLKEQMQEIQQSFSI 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2283 FAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQE 2362
Cdd:TIGR00618 575 LTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLT 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2363 LANIGQKtsmnahslsEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 2442
Cdd:TIGR00618 655 LTQERVR---------EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIEN 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2443 IQSIPENSVNVAIDHLSKDKPELEvVLTEDALKSLENQTYFKSFEENgkgSIINLETRLLQLESTVSAKDLELTQCYKQI 2522
Cdd:TIGR00618 726 ASSSLGSDLAAREDALNQSLKELM-HQARTVLKARTEAHFNNNEEVT---AALQTGAELSHLAAEIQFFNRLREEDTHLL 801
|
650 660
....*....|....*....|....*...
gi 22538387 2523 KDMQEQ-GQFETEMLQKKIVNLQKIVEE 2549
Cdd:TIGR00618 802 KTLEAEiGQEIPSDEDILNLQCETLVQE 829
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3108-3340 |
1.28e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3108 LKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQEQLSSEKMVVAELKSELAQTKLE---LETTLKAQHK 3184
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaeLRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3185 HLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQLNLLLE 3264
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 3265 QQKQLLNESQQKIESQRMLYDAQLSEEQGRNLELQvlleSEKVRIREMSSTLDRERELHAQLQSSDGTGQSRPPLP 3340
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQ----QEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
266-439 |
1.29e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 266 AKQQILTHQQQLEEQDHL----LEDYQKK-------KEDFTMQISFLQEKIKVYEMEQDK-----------------KVE 317
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKngenIARKQNKydelveeAKTIKAEIEELTDELLNLVMDIEDpsaalnklntaaakiksKIE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 318 NSNKEE-IQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIvQKNQEIKNMKLELTNSKQKERQSSEEIKQ 396
Cdd:PHA02562 273 QFQKVIkMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAI-DELEEIMDEFNEQSKKLLELKNKISTNKQ 351
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 22538387 397 LMGTVEELQKRNHKD-SQFETDIVQRMEQetqrkLEQLRAELDE 439
Cdd:PHA02562 352 SLITLVDKAKKVKAAiEELQAEFVDNAEE-----LAKLQDELDK 390
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1930-2213 |
1.29e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1930 EKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAM--------KAEAGPVEQQL------L 1995
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIaslersI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1996 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELE---QEKNTELMDLRQQNQALEKQLEKMRkfldEQ 2072
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeeyAELKEELEDLRAELEEVDKEFAETR----DE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2073 AIDREHERDVFQQEIQKLEQQLKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFR 2152
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELD---RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 2153 VRELEQALLVSADTFQKVEDRKHfgavEAKPELSlevQLQAERDAIDRKEKEITNLEEQLE 2213
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELS----KLQRELA---EAEAQARASEERVRGGRAVEEVLK 517
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
231-814 |
1.31e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 231 LTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISFLQE---KIKV 307
Cdd:TIGR00618 199 LTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEElraQEAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 308 YEMEQD---------------KKVENSNKE------EIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQI 366
Cdd:TIGR00618 279 LEETQErinrarkaaplaahiKAVTQIEQQaqrihtELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIR 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 367 VQKNQE----------------IKNMKLELTNSKQKERQSSEEIKQLMgtvEELQKRNHKDSQFETDIVQRMEQETQRKL 430
Cdd:TIGR00618 359 DAHEVAtsireiscqqhtltqhIHTLQQQKTTLTQKLQSLCKELDILQ---REQATIDTRTSAFRDLQGQLAHAKKQQEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 431 EQLRAELDEMYGQQIVQMKQELIR--QHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIK--------LMNVAINELNI 500
Cdd:TIGR00618 436 QQRYAELCAAAITCTAQCEKLEKIhlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLlelqeepcPLCGSCIHPNP 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 501 KLQD------TNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDLKAE 574
Cdd:TIGR00618 516 ARQDidnpgpLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 575 IVSASESRKELELKHEAEVTNYKIKLEmlekEKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEiEHRINIEK 654
Cdd:TIGR00618 596 LQDLTEKLSEAEDMLACEQHALLRKLQ----PEQDLQDVRLHLQQCS-QELALKLTALHALQLTLTQERVR-EHALSIRV 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 655 LKDNLGIHYKQQIDGLQNEMSQ--KIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQ---INELQKEIE 729
Cdd:TIGR00618 670 LPKELLASRQLALQKMQSEKEQltYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARedaLNQSLKELM 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 730 ILRQEEKEKGTLEQEVQELQLKTEL--------LEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDMLKIHTPVSQEE 801
Cdd:TIGR00618 750 HQARTVLKARTEAHFNNNEEVTAALqtgaelshLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQE 829
|
650
....*....|...
gi 22538387 802 RLIFLDSIKSKSK 814
Cdd:TIGR00618 830 EEQFLSRLEEKSA 842
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1976-2419 |
1.57e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1976 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVE-EQVSRFIEL-----EQEKNTEL- 2048
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKaEEKKKADEAkkkaeEAKKADEAk 1450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2049 --MDLRQQNQALEKQLEKMRKFLD-----EQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLK-- 2119
Cdd:PTZ00121 1451 kkAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKka 1530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2120 EKTDKCSELLLSKEQLQRDIQERNEEIEKLEfRVRELEQA---------LLVSADTFQKVEDRKHFGAVEAKPELSLEVQ 2190
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAkkaeedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2191 LQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 2270
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2271 MSTQ-DQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIEclmsdqecvkRNREEEI 2349
Cdd:PTZ00121 1690 AAEAlKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----------EEEKKKI 1759
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2350 EQLNEVIEKLQQELANigQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKET 2419
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRK--EKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM 1827
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
2200-2874 |
1.58e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2200 RKEKEITNLEE------QLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMST 2273
Cdd:pfam02463 150 MKPERRLEIEEeaagsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2274 QDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLN 2353
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2354 EVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL 2433
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2434 KRERESVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEDALKSLENQtyfkSFEENGKGSIINLETRLLQLESTVSAKDL 2513
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE----ESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2514 ELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKI-----------------VEEKVAAALVSQIQLEAVQEYAKFCQDNQT 2576
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERsqkeskarsglkvllalIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2577 ISSEPERTN--IQNLNQLREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNE 2654
Cdd:pfam02463 546 STAVIVEVSatADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2655 KKQREKEKKRSPQDVEVLKTTTELFHSNEESGFFNELEALRAESVATKAELASYKEKAEKLQEELLVKET----NMTSLQ 2730
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILrrqlEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2731 KDLSQVRDHLAEAKEKLSILEKEDETEVQESKKACMFEPLPIKLSKSIASQTDGTLKISSSNQTPQILVKNAGIQINLQS 2810
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 2811 ECSSEEVTEIISQFTEKIEKMQELHAAEILDMESRHISETETLKREHYVAVQLLKEECGTLKAV 2874
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLE 849
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
677-783 |
1.62e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 677 KIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLE 756
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 22538387 757 KQMKEKENDLQEKFAQLEAENSILKDE 783
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3187-3446 |
1.64e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3187 KELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELqwalEKEKAKLGRSEERDKEELEDLKfslesqkqrnlqlnllleqq 3266
Cdd:TIGR02169 688 RELSSLQSELRRIENRLDELSQELSDASRKIGEI----EKEIEQLEQEEEKLKERLEELE-------------------- 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3267 kqllnESQQKIESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERelhaqlqssdgtgqsrpplpSEDLLK 3346
Cdd:TIGR02169 744 -----EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--------------------IPEIQA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3347 ELQKqLEEKHSRIVELLNETEKYKLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQV 3426
Cdd:TIGR02169 799 ELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
250 260
....*....|....*....|
gi 22538387 3427 YKLDLEGQRLQGIMQEFQKQ 3446
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQ 897
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2190-2435 |
1.65e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2190 QLQAERDAIDRKEKEITNLEEQLEQFrEELENKNEEVQQLHMQLEIQKKE-STTRLQELEQENKLFKDDMEKLglaikES 2268
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLrAALRLWFAQRRLELLEAELEEL-----RA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2269 DAMSTQDQhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKittdnkviEEKNELIRDLETQIEclmsdqecvkrNREEE 2348
Cdd:COG4913 303 ELARLEAE----------LERLEARLDALREELDELEAQIR--------GNGGDRLEQLEREIE-----------RLERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2349 IEQLNEVIEKLQQELANIGqktsmnaHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 2428
Cdd:COG4913 354 LEERERRRARLEALLAALG-------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
....*..
gi 22538387 2429 ELFSLKR 2435
Cdd:COG4913 427 EIASLER 433
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
145-352 |
1.71e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.05 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 145 YSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYgTEGLQQLQEFEAAIKQRDGIITQLTANLQQARRekdet 224
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEY-NELQAELEALQAEIDKLQAEIAEAEAEIEERRE----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 225 mreflELTEQSQKLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQleeqdhLLEDYQKKKEDFTMQISFLQEK 304
Cdd:COG3883 87 -----ELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKIADADAD------LLEELKADKAELEAKKAELEAK 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 22538387 305 IKvyEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKL 352
Cdd:COG3883 156 LA--ELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
482-645 |
1.87e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.99 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 482 TVNEDQIKLMNVAinELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEA 561
Cdd:COG1579 1 AMPEDLRALLDLQ--ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 562 HKSLSTV------EDLKAEIVSASESRKELElKHEAEVTNykiKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEE 635
Cdd:COG1579 79 EEQLGNVrnnkeyEALQKEIESLKRRISDLE-DEILELME---RIEELEEELAELEAELAE-LEAELEEKKAEL----DE 149
|
170
....*....|
gi 22538387 636 ELSKLKEDLE 645
Cdd:COG1579 150 ELAELEAELE 159
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
444-683 |
1.97e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 444 QIVQMKQ-----ELIRQHM---AQMEEMKTRHKGEMENALRSYSNITVNEDQIKLMNVaINELNIKLQDTNSQKEKLkEE 515
Cdd:COG4913 199 KTQSFKPigdldDFVREYMleePDTFEAADALVEHFDDLERAHEALEDAREQIELLEP-IRELAERYAAARERLAEL-EY 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 516 LGLILEEKCAlQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSL------------STVEDLKAEIVSASESRK 583
Cdd:COG4913 277 LRAALRLWFA-QRRLELLEAELEELRAELARLEAELERLEARLDALREELdeleaqirgnggDRLEQLEREIERLERELE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 584 ELELKHEaevtNYKIKLEMLE----------KEKNAVLDRMAESQEAELERLRTQlLFSHEEELSKLKEDL-EIEHRIN- 651
Cdd:COG4913 356 ERERRRA----RLEALLAALGlplpasaeefAALRAEAAALLEALEEELEALEEA-LAEAEAALRDLRRELrELEAEIAs 430
|
250 260 270
....*....|....*....|....*....|..
gi 22538387 652 IEKLKDNLGIHYKQQIDGLQNEMSQKIETMQF 683
Cdd:COG4913 431 LERRKSNIPARLLALRDALAEALGLDEAELPF 462
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
3286-3425 |
2.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3286 AQLSEEQGRNLELQVLLESEKVRIREmsstldRERELHAQLQSSDGtgqsrpplpseDLLKELQKQLEEKHSRIVELLNE 3365
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALRE------ELDELEAQIRGNGG-----------DRLEQLEREIERLERELEERERR 360
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 22538387 3366 TEKY-------KLDSLQTRQQMEKDRQVHRKTLQTEQEANTEGQKKMHELQSKVEDLQRQLEEKRQQ 3425
Cdd:COG4913 361 RARLeallaalGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
503-783 |
2.14e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 503 QDTNSQKEKLKEELGLILEEKcALQRQLEDLVEELsfsrEQIQRARQTIAEQESKLNEAHKSLSTV----EDLKAEIVSA 578
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDK-LVQQDLEQTLALL----DKIDRQKEETEQLKQQLAQAPAKLRQAqaelEALKDDNDEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 579 SESRKElelkheaevtnyKIKLEMLEKEKNAVLDRMAESQEA------ELERLRTQLLFSHEEELSKLKEDLEIEHRINi 652
Cdd:PRK11281 114 TRETLS------------TLSLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQPERAQAALYANSQRLQQIRNLLK- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 653 eKLKDNLGIHYKQQIDGLQNEMSQKietmqfekdNLITKQNQLILEISklkDLQQSLVNSKSEEMTLQINELQKEIEILR 732
Cdd:PRK11281 181 -GGKVGGKALRPSQRVLLQAEQALL---------NAQNDLQRKSLEGN---TQLQDLLQKQRDYLTARIQRLEHQLQLLQ 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 22538387 733 QEEKEKgtleqevqelqlKTELLEKQMKEKENdlQEKFAQLEaENSILKDE 783
Cdd:PRK11281 248 EAINSK------------RLTLSEKTVQEAQS--QDEAARIQ-ANPLVAQE 283
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2187-2425 |
2.23e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2187 LEVQLQAERDAIdrkEKEITNLEEQLEQFREELENKNEEVQQLH-----MQLEIQKKESTTRLQELEQ---ENKLFKDDM 2258
Cdd:COG3206 162 LEQNLELRREEA---RKALEFLEEQLPELRKELEEAEAALEEFRqknglVDLSEEAKLLLQQLSELESqlaEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2259 EKLGLAIKESDAMSTQDQHVLFGkfAQIIQEKEVEIDQLNEQVTKLQQQLkiTTDNKVIEEKNELIRDLETQIEclmSDQ 2338
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY--TPNHPDVIALRAQIAALRAQLQ---QEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2339 ECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahslseeadslkhQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 2418
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLA---------------ELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
....*..
gi 22538387 2419 TNFKMNQ 2425
Cdd:COG3206 377 ARLAEAL 383
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
2020-2403 |
3.41e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2020 QKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQAL---------EKQLEKMRKFLDEQAIDREHERDVFQQEIQKL 2090
Cdd:pfam05483 376 EDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILaedeklldeKKQFEKIAEELKGKEQELIFLLQAREKEIHDL 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2091 EQQLKVVPRFQpisEHQTREVEQLANHL---------------------KEKTDKCSELLLSKEQLQRDIQERNEEIEKL 2149
Cdd:pfam05483 456 EIQLTAIKTSE---EHYLKEVEDLKTELekeklknieltahcdklllenKELTQEASDMTLELKKHQEDIINCKKQEERM 532
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2150 EFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL-SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQ 2228
Cdd:pfam05483 533 LKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE 612
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2229 LHMQLEIQKKESTTRLQELeqenKLFKDDMEKLGLAIKESDAmstqdqhvlfgKFAQIIQ--EKEVEIDQLNEQVTKLQQ 2306
Cdd:pfam05483 613 LHQENKALKKKGSAENKQL----NAYEIKVNKLELELASAKQ-----------KFEEIIDnyQKEIEDKKISEEKLLEEV 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2307 QLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNE---VIEKLQQELANIGQKTSMNAHSLSEEADS 2383
Cdd:pfam05483 678 EKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSelgLYKNKEQEQSSAKAALEIELSNIKAELLS 757
|
410 420
....*....|....*....|
gi 22538387 2384 LKHQLDVVIAEKLALEQQVE 2403
Cdd:pfam05483 758 LKKQLEIEKEEKEKLKMEAK 777
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
2139-2369 |
3.55e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2139 IQERNEEIEKLEFRVRELEQALlvsaDTFQKVEDRkhfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREE 2218
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQI----KTYNKNIEE----------------QRKKNGENIARKQNKYDELVEEAKTIKAE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2219 LENKNEEVQQLHMQLEiqkkESTTRLQELEQENKLFKDDMEKLGLAIK-----------------ESDAMS--TQDQHVL 2279
Cdd:PHA02562 236 IEELTDELLNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctqqiseGPDRITkiKDKLKEL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2280 FGKFAQI---IQEKEVEIDQLNEQVTKLQQ-QLKITTDNKVIEEKNELIRDLETQIECLMSDqecvKRNREEEIEQLNEV 2355
Cdd:PHA02562 312 QHSLEKLdtaIDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAKKVKAAIEELQAE----FVDNAEELAKLQDE 387
|
250
....*....|....
gi 22538387 2356 IEKLQQELANIGQK 2369
Cdd:PHA02562 388 LDKIVKTKSELVKE 401
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1551-1710 |
3.61e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1551 EMFSKDKTFIVRQSIHDEISVSSMDASRQLMLnEEQLEDMRQELVRQYQEHQQATELLRQAHMRQMERQREDQEQLQEEI 1630
Cdd:pfam17380 384 QMERQQKNERVRQELEAARKVKILEEERQRKI-QQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQV 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1631 KRLNRQLAQRSSIDNENLVSERERVLLEEL--EALKQLSLAGREKLCCELRNSSTQTQNGNENQGEV-EEQTFKEKELDR 1707
Cdd:pfam17380 463 ERLRQQEEERKRKKLELEKEKRDRKRAEEQrrKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEER 542
|
...
gi 22538387 1708 KPE 1710
Cdd:pfam17380 543 RKQ 545
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
596-776 |
3.90e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 596 YKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEIEHRINIEKLKDnlgihykqqidgLQNEMS 675
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQK------------LEKRLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 676 QKIETMQFEKDNLITKQNQLILEISKLKDLQQSLvNSKSEEMTLQINELQKEIEI---LRQEEKEKGTLEQEVQELQLKT 752
Cdd:PRK12704 93 QKEENLDRKLELLEKREEELEKKEKELEQKQQEL-EKKEEELEELIEEQLQELERisgLTAEEAKEILLEKVEEEARHEA 171
|
170 180
....*....|....*....|....
gi 22538387 753 ELLEKQMKEKendlqekfAQLEAE 776
Cdd:PRK12704 172 AVLIKEIEEE--------AKEEAD 187
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2028-2331 |
3.93e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 3.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2028 IDVEEQVSRFIELEQEKntelmdLRQQNQALEKQLEKMRKfLDEQAIDREHERDvfQQEIQKLEQQLKVVPRFQPIS--- 2104
Cdd:pfam17380 284 VSERQQQEKFEKMEQER------LRQEKEEKAREVERRRK-LEEAEKARQAEMD--RQAAIYAEQERMAMERERELErir 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2105 -EHQTREVEQL-ANHLKEKTDKCSELllskEQLQRDIQERNEEI-EKLEF-RVRELEQALLVSADTFQKVEDRKHFGAVE 2180
Cdd:pfam17380 355 qEERKRELERIrQEEIAMEISRMREL----ERLQMERQQKNERVrQELEAaRKVKILEEERQRKIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2181 AKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEK 2260
Cdd:pfam17380 431 EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 2261 LGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQI 2331
Cdd:pfam17380 511 EERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQI 581
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2179-2249 |
3.93e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 3.93e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 2179 VEAKPELsLEVQLQAERDaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQ 2249
Cdd:PRK12704 60 LEAKEEI-HKLRNEFEKE-LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
313-521 |
4.00e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.21 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 313 DKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTT----ADKLLGELQEQIV-QKNQEIKNMKLELTNSKQKE 387
Cdd:pfam09731 246 DQYKELVASERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSliahAHREIDQLSKKLAeLKKREEKHIERALEKQKEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 388 RQSSEEIKQLMGTVEELQKRNHKDSQFE--TDIVQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHM-------- 457
Cdd:pfam09731 326 DKLAEELSARLEEVRAADEAQLRLEFERerEEIRESYEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLqdikekve 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22538387 458 -------AQMEEMKTRHKGeMENALRSYSNITVNEDQIKLMNVAINELNIKLQDTN--SQKEKLKEELGLILE 521
Cdd:pfam09731 406 eeragrlLKLNELLANLKG-LEKATSSHSEVEDENRKAQQLWLAVEALRSTLEDGSadSRPRPLVRELKALKE 477
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
197-594 |
4.02e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 197 EAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQasETLRNSTHSSTAADLLQAKQQILtHQQQ 276
Cdd:pfam07888 37 EECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELK--EELRQSREKHEELEEKYKELSAS-SEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 277 LEEQDHLL---EDYQKKKEDFTMQISFLQEKIKVYEMEQDKKVENSNKEEIQ--EKETIIEELNTKIIEEEKKTLELKDK 351
Cdd:pfam07888 114 SEEKDALLaqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQrkEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 352 LTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQE--TQRK 429
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRdrTQAE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 430 LEQLRAELDEMYGQqivqmkqelIRQHMAQMEEMKTRHKGEMENALRsysNITVNEDQIKLMNVAINELNIKLQDTNSQK 509
Cdd:pfam07888 274 LHQARLQAAQLTLQ---------LADASLALREGRARWAQERETLQQ---SAEADKDRIEKLSAELQRLEERLQEERMER 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 510 EKLKEELGlileekcalqrqledlvEELSFSREQIQRARQTIAEQESKLNEAHKSlstVEDLKAEIVSASESRKELELKH 589
Cdd:pfam07888 342 EKLEVELG-----------------REKDCNRVQLSESRRELQELKASLRVAQKE---KEQLQAEKQELLEYIRQLEQRL 401
|
....*
gi 22538387 590 EAEVT 594
Cdd:pfam07888 402 ETVAD 406
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
323-568 |
4.06e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 323 EIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMGtve 402
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 403 ELQKRNHKDSQFE--------TDIVQRMEqetqrkleqlraeldemYGQQIVQMKQELIRQHMAQMEEMKTRHKGemena 474
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAE----- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 475 lrsysnitvNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQ 554
Cdd:COG3883 152 ---------LEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAA 222
|
250
....*....|....
gi 22538387 555 ESKLNEAHKSLSTV 568
Cdd:COG3883 223 AAAAAAAAAAAAAA 236
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
311-432 |
4.56e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 311 EQDKKVENSNKEEIqekETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELtnskqkERQS 390
Cdd:PRK00409 505 EEAKKLIGEDKEKL---NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA------EKEA 575
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 22538387 391 SEEIKQLMGTVEELQKRNHKDSQFETDIVQRME-QETQRKLEQ 432
Cdd:PRK00409 576 QQAIKEAKKEADEIIKELRQLQKGGYASVKAHElIEARKRLNK 618
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
401-656 |
4.86e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 401 VEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAELdemygqqivqmkqelirqhmaqmEEMKTRHkgemeNALRSYSN 480
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAAL-----------------------EEFRQKN-----GLVDLSEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 481 ITVNEDQIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQledlvEELSFSREQIQRARQTIAEQESKLNE 560
Cdd:COG3206 214 AKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTP 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 561 AHkslSTVEDLKAEIVSA----SESRKELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAE--SQEAELERLRTQLLFSHE 634
Cdd:COG3206 289 NH---PDVIALRAQIAALraqlQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAElpELEAELRRLEREVEVARE 365
|
250 260
....*....|....*....|....
gi 22538387 635 --EELSKLKEDLEIEHRINIEKLK 656
Cdd:COG3206 366 lyESLLQRLEEARLAEALTVGNVR 389
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
214-548 |
4.86e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 214 LQQARREKDETMREFLELTEQSQKLQIQFQQLqaSETLRNSTHSSTAADLLQAKQQIlthQQQLEEQDHLLEDYQKKKED 293
Cdd:PRK04863 788 IEQLRAEREELAERYATLSFDVQKLQRLHQAF--SRFIGSHLAVAFEADPEAELRQL---NRRRVELERALADHESQEQQ 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 294 FTMQISFLQEKIK-VYEMEQDKKV--ENSNKEEIQEKETIIEEL--NTKIIEEEKKTLELKDKLTTAdklLGELQEQIVQ 368
Cdd:PRK04863 863 QRSQLEQAKEGLSaLNRLLPRLNLlaDETLADRVEEIREQLDEAeeAKRFVQQHGNALAQLEPIVSV---LQSDPEQFEQ 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 369 KNQEIKNMKLELTNSKQKERQSSEEIkqlmgtveelQKRNHkdsqFETDIVQRMEQETQRKLEQLRAELDEMYgQQIVQM 448
Cdd:PRK04863 940 LKQDYQQAQQTQRDAKQQAFALTEVV----------QRRAH----FSYEDAAEMLAKNSDLNEKLRQRLEQAE-QERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 449 KQELiRQHMAQMEEMKTRH---------KGEMENAL-RSYSNITVNEDQIKLMNVAI--NELNIKLQDTNSQKEKLKEEL 516
Cdd:PRK04863 1005 REQL-RQAQAQLAQYNQVLaslkssydaKRQMLQELkQELQDLGVPADSGAEERARArrDELHARLSANRSRRNQLEKQL 1083
|
330 340 350
....*....|....*....|....*....|..
gi 22538387 517 GLILEEKCALQRQLEDLVEELSFSREQIQRAR 548
Cdd:PRK04863 1084 TFCEAEMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1992-2633 |
5.02e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1992 QQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFL-- 2069
Cdd:pfam15921 116 QTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILvd 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2070 -DEQAIDREHERDVF-----------------------------------QQEIQKLEQQLKVVPRFQP--------ISE 2105
Cdd:pfam15921 196 fEEASGKKIYEHDSMstmhfrslgsaiskilreldteisylkgrifpvedQLEALKSESQNKIELLLQQhqdrieqlISE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2106 HQ---TREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAK 2182
Cdd:pfam15921 276 HEveiTGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLAN 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2183 PELS---------------LEVQLQAERDAIDRKEKEITNLEEQ--------------LEQFREELENKNEEVQQLHMQL 2233
Cdd:pfam15921 356 SELTearterdqfsqesgnLDDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALL 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2234 EIQKKESTTRLQE-----------LEQENKL---FKDDMEKLGLAIKESDA--MSTQDQHVLFGKFAQIIQEKEVEIDQL 2297
Cdd:pfam15921 436 KAMKSECQGQMERqmaaiqgknesLEKVSSLtaqLESTKEMLRKVVEELTAkkMTLESSERTVSDLTASLQEKERAIEAT 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2298 NEQVTKLQQQLKITTDN-KVIEEKNELIRDLETQIECLmsdqecvkrnrEEEIEQLNEVIEKLQQELANIGQKTSMNAHS 2376
Cdd:pfam15921 516 NAEITKLRSRVDLKLQElQHLKNEGDHLRNVQTECEAL-----------KLQMAEKDKVIEILRQQIENMTQLVGQHGRT 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2377 LSeeadslkhqldVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLkrERESVEKIQSIPENSVNVAID 2456
Cdd:pfam15921 585 AG-----------AMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL--ELEKVKLVNAGSERLRAVKDI 651
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2457 HLSKDKPELEVVLTEDALKSLENQtyFKSFEENGKGSIINLETRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETeml 2536
Cdd:pfam15921 652 KQERDQLLNEVKTSRNELNSLSED--YEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAM--- 726
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2537 qKKIVNLQKIVEEKVAaalvsqiQLEAVQEYAKFCQDNQTISSEPERTNIQNLNQLRED---------ELGSDISALTLR 2607
Cdd:pfam15921 727 -KVAMGMQKQITAKRG-------QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQElstvateknKMAGELEVLRSQ 798
|
730 740
....*....|....*....|....*.
gi 22538387 2608 ISELESQVVEMHTSliLEKEQVEIAE 2633
Cdd:pfam15921 799 ERRLKEKVANMEVA--LDKASLQFAE 822
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1877-2659 |
5.33e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1877 ELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCAS 1956
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1957 NRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLE---VQCQAEKVRDDLQKQVKALEIDVEEQ 2033
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKleqLEEELLAKKKLESERLSSAAKLKEEE 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2034 VSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQ 2113
Cdd:pfam02463 397 LELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2114 LANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQK-----VEDRKHFGAVEAKPELSLE 2188
Cdd:pfam02463 477 TQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGdlgvaVENYKVAISTAVIVEVSAT 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2189 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKES 2268
Cdd:pfam02463 557 ADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2269 DAMSTQDQHVLFGKF---AQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNR 2345
Cdd:pfam02463 637 LKESAKAKESGLRKGvslEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLK 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2346 EEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVEtaneemtfmKNVLKETNFKMNQ 2425
Cdd:pfam02463 717 LEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK---------ELAEEREKTEKLK 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2426 LTQELFSLKRERESVEKIQsipensvnvaidhLSKDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQLE 2505
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRAL-------------EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2506 STVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQEYAKfcqdNQTISSEPERTN 2585
Cdd:pfam02463 855 ELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE----IEERIKEEAEIL 930
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22538387 2586 IQNLNQLREDELGSDISAltlrISELESQVVEMHTSLILEKEQVEIAEKNVLEKEKKLLELQKLLEGNEKKQRE 2659
Cdd:pfam02463 931 LKYEEEPEELLLEEADEK----EKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERL 1000
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3277-3444 |
5.47e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3277 IESQRMLYDAQLSEEQGRNLELQVLLESEKVRIREMSSTLDRERELHAQLQSSDGTGQSRPPL-PSEDLLKELQKQLEEK 3355
Cdd:COG3206 210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLaELEAELAELSARYTPN 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3356 HSRIVELLNEtekykLDSLqtRQQMEKDRQVHRKTLQTEQEAntegqkkmheLQSKVEDLQRQLEEKRQQVYKLDLEGQR 3435
Cdd:COG3206 290 HPDVIALRAQ-----IAAL--RAQLQQEAQRILASLEAELEA----------LQAREASLQAQLAQLEARLAELPELEAE 352
|
....*....
gi 22538387 3436 LQGIMQEFQ 3444
Cdd:COG3206 353 LRRLEREVE 361
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
155-769 |
5.69e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 155 THLEMMESELAGKQHEIEELNRELEEMrvtygtEGLQQLQEFEaaikqrdgiITQLTANLQQARREK---DETMREFLEL 231
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADD------EKSHSITLKE---------IERLSIEYNNAMDDYnnlKSALNELSSL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 232 TEQSQKLQIQFQQLQASetlrnsthsstaadlLQAKQQILTHQQQLEEQDHLLEDYQ--KKKEDFTMQISFLQEKIKVYE 309
Cdd:PRK01156 248 EDMKNRYESEIKTAESD---------------LSMELEKNNYYKELEERHMKIINDPvyKNRNYINDYFKYKNDIENKKQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 310 MEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELkdklttaDKLLGELQEQIVQKNQEIKNMKleltNSKQKERQ 389
Cdd:PRK01156 313 ILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDL-------NNQILELEGYEMDYNSYLKSIE----SLKKKIEE 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 390 SSEEIKQLMGTVEELQKRNHKDSqfetDIVQRMEQETQRKLEQLRAELDEMygqqivQMKQELIRQHMAQMEEMKTRHKG 469
Cdd:PRK01156 382 YSKNIERMSAFISEILKIQEIDP----DAIKKELNEINVKLQDISSKVSSL------NQRIRALRENLDELSRNMEMLNG 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 470 EmenALRSYSNITVNEDQIklmNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQLEDL----VEELSFSREQIQ 545
Cdd:PRK01156 452 Q---SVCPVCGTTLGEEKS---NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeseeINKSINEYNKIE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 546 RARQTIAEQESKLNEAhkslstvedlkaeivsasesrKELELKHEAEVTNYK-IKLEMLEKEKNAVLDRMAESQEAELER 624
Cdd:PRK01156 526 SARADLEDIKIKINEL---------------------KDKHDKYEEIKNRYKsLKLEDLDSKRTSWLNALAVISLIDIET 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 625 LRTQllfsHEEELSKLKEDLEIEHRINIEKLKDNLGI-HYKQQIDGLQNEMSQKIETMQFEK---DNLITKQNQLILEIS 700
Cdd:PRK01156 585 NRSR----SNEIKKQLNDLESRLQEIEIGFPDDKSYIdKSIREIENEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIA 660
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22538387 701 KLKDLQQSL--VNSKSEEMTLQINELQKEIEILRQEEKEKgtlEQEVQELQLKTELLEKQMKEKENDLQEK 769
Cdd:PRK01156 661 EIDSIIPDLkeITSRINDIEDNLKKSRKALDDAKANRARL---ESTIEILRTRINELSDRINDINETLESM 728
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
347-804 |
5.83e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.89 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 347 ELKDKLTTADKLLGELQEQIVQKNQEIKNMKLELtNSKQKERQSSEEIKQLMGTVEElqkrnhKDSQFETdiVQRMEQET 426
Cdd:pfam10174 182 ERTRRIAEAEMQLGHLEVLLDQKEKENIHLREEL-HRRNQLQPDPAKTKALQTVIEM------KDTKISS--LERNIRDL 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 427 QRKLEQLRAELDEMYGQQIVQMKQ-ELIRQH-------MAQMEEMKTRHKGEM---ENALRSYSNitVNEDQIKLMNVAI 495
Cdd:pfam10174 253 EDEVQMLKTNGLLHTEDREEEIKQmEVYKSHskfmknkIDQLKQELSKKESELlalQTKLETLTN--QNSDCKQHIEVLK 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 496 NELNIKLQDTNSQKEKLkEELGLILEEKCAL----QRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDL 571
Cdd:pfam10174 331 ESLTAKEQRAAILQTEV-DALRLRLEEKESFlnkkTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 572 KAEIVSASESRKELELKHEAEVTNYKIKLEMLEK---EKNAVLDRMAESQEAElERLRTQLLFSHEEELSKLKEDLEIEH 648
Cdd:pfam10174 410 LRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEalsEKERIIERLKEQRERE-DRERLEELESLKKENKDLKEKVSALQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 649 RINIEK------LKDNL------GIHYKQQIDGLQNEMSQKIETMQFEKDNLITKQNQLILE------ISKLKDLQQSlV 710
Cdd:pfam10174 489 PELTEKesslidLKEHAsslassGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVrtnpeiNDRIRLLEQE-V 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 711 NSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQELQLKTELLEKQMKEKENDLQEKFAQLEAENSILKDEKKTLEDM 790
Cdd:pfam10174 568 ARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDN 647
|
490
....*....|....
gi 22538387 791 LKIHTPVSQEERLI 804
Cdd:pfam10174 648 LADNSQQLQLEELM 661
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
147-475 |
5.89e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 147 EQGAQDSPTHLEMMESELAGKQHEIEELNRELEEMRVTYGTEGLQQLQEFEAAIKQrdgiitqltaNLQQARREKDETMR 226
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQ----------LALQKMQSEKEQLT 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 227 EFLELTEQSQ-KLQIQFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLlEDYQKKKEDFTMQISFLQEKI 305
Cdd:TIGR00618 694 YWKEMLAQCQtLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQ-ARTVLKARTEAHFNNNEEVTA 772
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 306 KVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQ-------EIKNMKL 378
Cdd:TIGR00618 773 ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEeksatlgEITHQLL 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 379 ELTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQETQRKLEQLRAeldemygqqivqmKQELIRQHMA 458
Cdd:TIGR00618 853 KYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGDALIKFLHEITLYANVRLA-------------NQSEGRFHGR 919
|
330
....*....|....*..
gi 22538387 459 QMEEMKTRHKGEMENAL 475
Cdd:TIGR00618 920 YADSHVNARKYQGLALL 936
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
190-400 |
6.79e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 190 LQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQ--------------------KLQIQFQQLQA-- 247
Cdd:PRK11281 65 LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDeetretlstlslrqlesrlaQTLDQLQNAQNdl 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 248 ---------------------------SETLRNSTHSSTAA---------DLLQAKQ-----QILTHQQQLEEQDHLLED 286
Cdd:PRK11281 145 aeynsqlvslqtqperaqaalyansqrLQQIRNLLKGGKVGgkalrpsqrVLLQAEQallnaQNDLQRKSLEGNTQLQDL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 287 YQKKKEDFTMQISFLQEKIKVY-EMEQDKKVENSNK-----EEIQEKETIIEelNTKIIEEEKKTLELKDKLTTADKLLG 360
Cdd:PRK11281 225 LQKQRDYLTARIQRLEHQLQLLqEAINSKRLTLSEKtvqeaQSQDEAARIQA--NPLVAQELEINLQLSQRLLKATEKLN 302
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 22538387 361 ELqeqiVQKNQEIKNMkleLTNSKQKERQSSEEIKQLMGT 400
Cdd:PRK11281 303 TL----TQQNLRVKNW---LDRLTQSERNIKEQISVLKGS 335
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2077-2277 |
6.81e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2077 EHERDVFQQEIQKLEQQLKVVprfqpisehqTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVREL 2156
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAA----------QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2157 EQAL-------------------LVSADTFQKVEDRkhFGAVEAKPE---------LSLEVQLQAERDAIDRKEKEITNL 2208
Cdd:COG3883 85 REELgeraralyrsggsvsyldvLLGSESFSDFLDR--LSALSKIADadadlleelKADKAELEAKKAELEAKLAELEAL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 22538387 2209 EEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQH 2277
Cdd:COG3883 163 KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAA 231
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
3108-3443 |
7.44e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3108 LKREQESEKPSQELLEYNIQQKQSQMLEMQVELSSMKDRATELQE---------QLSSEKMVVAELKSELAQTKLELETT 3178
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3179 LKAQHKHLKELEAFRLEVKDKTDEVHLLNDTLASEQKKSRELQWALEKEKAKLGRSEERDKEELEDLKFSLESQKQRNLQ 3258
Cdd:PRK03918 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3259 LNLLLEQQKQLLNESQQKIESQRM-------------LYDAQLSEEQGRNLELQVLLESEKVRiREMSSTLDRERELHAQ 3325
Cdd:PRK03918 403 IEEEISKITARIGELKKEIKELKKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 3326 LQSSDGTGQSRPPLPSEDLLKELQKQLEEKHSRIV--ELLNETEKY-----KLDSLQTRQQMEKDRQVHRKTLQTEQEan 3398
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLA-- 559
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 22538387 3399 tEGQKKMHELQSKVEDLQRQLEEKR-QQVYKLDLEGQRLQGIMQEF 3443
Cdd:PRK03918 560 -ELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNEY 604
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
503-646 |
7.74e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.35 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 503 QDTNSQKeKLKEELGLILEEKCALQRQLEDLVEELSFSREQIQRARQTIAEQESKLNEAHKSLSTVEDlkaEIVSASESR 582
Cdd:pfam05911 678 LKTEENK-RLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAET---QLKCMAESY 753
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 583 KELELKH---EAEVTNYKIKLEMLEKE----KNAVLDRMAESQEAE--LERLRTQ--LLFSHEEELSKLKEDLEI 646
Cdd:pfam05911 754 EDLETRLtelEAELNELRQKFEALEVEleeeKNCHEELEAKCLELQeqLERNEKKesSNCDADQEDKKLQQEKEI 828
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
164-973 |
7.84e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 7.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 164 LAGKQHEIEELNRELEEMRVT--YGT-EGLQQLQEF-EAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQ 239
Cdd:TIGR00606 274 LKSRKKQMEKDNSELELKMEKvfQGTdEQLNDLYHNhQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 240 IQFQQLQASETLRNSthsstaadllqakqqilthqQQLEEQDHLLEDYQKKKEDFTMQISFLQEkIKVYEMEQDKKVENS 319
Cdd:TIGR00606 354 LQADRHQEHIRARDS--------------------LIQSLATRLELDGFERGPFSERQIKNFHT-LVIERQEDEAKTAAQ 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 320 NKEEIQEKETIIEELNTKIieeekktlelKDKLTTADKLLGELQEQIVQKNQEIKNMKLELTNSKQKERQSSEEIKQLMG 399
Cdd:TIGR00606 413 LCADLQSKERLKQEQADEI----------RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRK 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 400 TVEELQKRNhKDSQFETDI-----VQRMEQETQRKLEQLRAELDEMYGQQIVQMKQELIRQHMA----QMEEMKTRHKGE 470
Cdd:TIGR00606 483 AERELSKAE-KNSLTETLKkevksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkdeQIRKIKSRHSDE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 471 MENALRSYSNITVNED-------QIKLMNVAINELNIKLQDTNSQKEKLKEELGLILEEKCALQRQL------EDLVEEL 537
Cdd:TIGR00606 562 LTSLLGYFPNKKQLEDwlhskskEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDL 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 538 SFSREQIQRARQTIAEQESKLNEAHKSLSTVED--------------LKAEIVSASESRKELELKHEAEVTNYKIKLEML 603
Cdd:TIGR00606 642 ERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDenqsccpvcqrvfqTEAELQEFISDLQSKLRLAPDKLKSTESELKKK 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 604 EKEKNAVLDrMAESQEAELERLRTQL------LFSHEEELSKLKEDLEIEHRI---------NIEKLKDNLGIHYKQQID 668
Cdd:TIGR00606 722 EKRRDEMLG-LAPGRQSIIDLKEKEIpelrnkLQKVNRDIQRLKNDIEEQETLlgtimpeeeSAKVCLTDVTIMERFQME 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 669 GLQNEMSQKIETMQFEKDNLITKQNQLILEISKlKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEKGTLEQEVQEL 748
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQE-KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTN 879
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 749 QLKTELLEKQMKEKENDLQEKFAQL-EAENSILKDEKKTLEDMLKIHTPVSQEErlifldSIKSKSKDSVwekeieilie 827
Cdd:TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIkDAKEQDSPLETFLEKDQQEKEELISSKE------TSNKKAQDKV---------- 943
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 828 enedlkqqciqlnEEIEKQRNTFSFAEKNFEVNYQELQEEYaclLKVKDDLEDSKNKQELEYKSKLKALNEELHLQRINP 907
Cdd:TIGR00606 944 -------------NDIKEKVKNIHGYMKDIENKIQDGKDDY---LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 908 TTVKMKSSVFDEDKTFVAETLEMGEVVEKDTTELMEKLEVTKREKLELSQRLSDLSEQLKQKHGEI 973
Cdd:TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLA 1073
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1908-2508 |
8.32e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1908 RAREQLAVELSKAEGVIDGYADEKTlfERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLsrqKEAMKAEA 1987
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWFA--QRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL---EAQIRGNG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1988 GPVEQQLLQETEKLMKEKLEVqcqaEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKmrk 2067
Cdd:COG4913 337 GDRLEQLEREIERLERELEER----ERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE--- 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2068 fLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQpiseHQTREveQLANHLKEKTDKC---SELLlskeqlqrDIQERNE 2144
Cdd:COG4913 410 -AEAALRDLRRELRELEAEIASLERRKSNIPARL----LALRD--ALAEALGLDEAELpfvGELI--------EVRPEEE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2145 E----IEKLefrVRELEQALLVSADTFQKVE---DRKHFGAV----EAKPELSLEVQLQAERDAIDRK----EKEITN-L 2208
Cdd:COG4913 475 RwrgaIERV---LGGFALTLLVPPEHYAAALrwvNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKldfkPHPFRAwL 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2209 EEQLEQFREELenKNEEVQQLH-----MQLEIQKKESTTRLQeleqenklfKDDMEKLglaikesdamstQDQHVLFGKF 2283
Cdd:COG4913 552 EAELGRRFDYV--CVDSPEELRrhpraITRAGQVKGNGTRHE---------KDDRRRI------------RSRYVLGFDN 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2284 AQIIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEKNELIRDLETQIEclmsdqecvkrnREEEIEQLNEVIEKLQQE 2362
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLeALEAELDALQERREALQRLAEYSW------------DEIDVASAEREIAELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2363 LAnigqktsmnahSLSEEADSLKhqldvviaeklALEQQVETANEEmtfmknvLKETNFKMNQLTQELFSLKRERESVEK 2442
Cdd:COG4913 677 LE-----------RLDASSDDLA-----------ALEEQLEELEAE-------LEELEEELDELKGEIGRLEKELEQAEE 727
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 22538387 2443 IQsipeNSVNVAIDHLSKDKPELEVVLTEDALKSLENQTYFKSFEENGKGSIINLETRLLQLESTV 2508
Cdd:COG4913 728 EL----DELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2139-2412 |
8.60e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2139 IQERNEEIEklEFRVRELEQALLVSADTFQKVedRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEqleqfreE 2218
Cdd:PRK05771 33 IEDLKEELS--NERLRKLRSLLTKLSEALDKL--RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEK-------E 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2219 LENKNEEVQQLhmqleiqkkesTTRLQELEQEnklfKDDMEKLG-LAIKESDAMSTQDQHVLFGK-FAQIIQEKEVEIDQ 2296
Cdd:PRK05771 102 IKELEEEISEL-----------ENEIKELEQE----IERLEPWGnFDLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2297 LNEQVTKLQQQLK---ITTDNKVIEEKNELIRDLETQI----ECLMSDQecVKRNREEEIEQLNEVIEKLQQELANIGQK 2369
Cdd:PRK05771 167 ENVEYISTDKGYVyvvVVVLKELSDEVEEELKKLGFERleleEEGTPSE--LIREIKEELEEIEKERESLLEELKELAKK 244
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 22538387 2370 tsmnahslseEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 2412
Cdd:PRK05771 245 ----------YLEELLALYEYLEIELERAEALSKFLKTDKTFA 277
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
273-847 |
9.05e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 273 HQQQLEEQDHLLEDYQKKKEDFTMQISFLQEKIKVYEMeqdKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKL 352
Cdd:PRK01156 213 HSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDM---KNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDP 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 353 TTADKllGELQEQIVQKNQeIKNMKLELTNSKQKERQSSEEIKQLmgtvEELQKRNhkdSQFEtdivqrmeqETQRKLEQ 432
Cdd:PRK01156 290 VYKNR--NYINDYFKYKND-IENKKQILSNIDAEINKYHAIIKKL----SVLQKDY---NDYI---------KKKSRYDD 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 433 LRAELDEMYGQQI-VQMKQELIRQHMAQMEEMKTRHKGEMENALRSYSNITVNEDQIklmNVAINELNIKLQDTNSQKEK 511
Cdd:PRK01156 351 LNNQILELEGYEMdYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAI---KKELNEINVKLQDISSKVSS 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 512 LKEELGLILEEKCALQRQLEDL-------VEELSFSREQIQRARQTIAEQESKLNEAHKSLST-VEDLKAEIVSASESRK 583
Cdd:PRK01156 428 LNQRIRALRENLDELSRNMEMLngqsvcpVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIeVKDIDEKIVDLKKRKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 584 ELELKHEAEVTNYKIKLEMLEKEKNAVLDRMAESQEAEL--ERLRTQLLFSHEEELSKLKEDLeiehrINIEKLKDNLGI 661
Cdd:PRK01156 508 YLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLKLEDLDSKRTSW-----LNALAVISLIDI 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 662 hykQQIDGLQNEMSQKIetmqfekDNLITKQNQLILEISKLKDLQQSlvnskseemtlQINELQKEIEILRQEEKEKGTL 741
Cdd:PRK01156 583 ---ETNRSRSNEIKKQL-------NDLESRLQEIEIGFPDDKSYIDK-----------SIREIENEANNLNNKYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 742 EQEVQELQLKTELLEKQ---MKEKENDLQEKFAQLEAENSILKDEKKTLEDmlkihtpvsqeerlifldsikSKSKDSVW 818
Cdd:PRK01156 642 KILIEKLRGKIDNYKKQiaeIDSIIPDLKEITSRINDIEDNLKKSRKALDD---------------------AKANRARL 700
|
570 580
....*....|....*....|....*....
gi 22538387 819 EKEIEILIEENEDLKQQCIQLNEEIEKQR 847
Cdd:PRK01156 701 ESTIEILRTRINELSDRINDINETLESMK 729
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2287-2439 |
9.15e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2287 IQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIeclmsdqecvkRNREEEIEQLNEVIEKLQQ 2361
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAeledeLAALEARLEAAKTELEDLEKEI-----------KRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22538387 2362 ELANIgqktsmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERES 2439
Cdd:COG1579 81 QLGNV---------RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
666-1241 |
9.16e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 666 QIDGLQNEMSQkIETMQFEKDNLITKQNQLILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEekeKGTLEQEV 745
Cdd:pfam12128 242 EFTKLQQEFNT-LESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGE---LSAADAAV 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 746 QELQLKTELLEKQMKEKENDLQEKFAQ-LEAENSI---LKDEKKTLEDMLKIHTPVSQE-ERLIFLDSIKSKSK------ 814
Cdd:pfam12128 318 AKDRSELEALEDQHGAFLDADIETAAAdQEQLPSWqseLENLEERLKALTGKHQDVTAKyNRRRSKIKEQNNRDiagikd 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 815 --DSVWEKEIEILIEENEDLKQQCIQLNEEIEKQRNTFSFAEKNFEVNYQELQEEYACLLKVKDDLEDSKNKQELeyksk 892
Cdd:pfam12128 398 klAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDER----- 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 893 LKALNEELHLQRINPTTVKMKSSVFDedktfvaetlemgevveKDTTELMEKLEVTKREKLELSQRLSDLSEQL-KQKHG 971
Cdd:pfam12128 473 IERAREEQEAANAEVERLQSELRQAR-----------------KRRDQASEALRQASRRLEERQSALDELELQLfPQAGT 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 972 EISFLNEEVKSLKQEKEQVSLRcreleiiinhnraENVQSCDtqvsslLDGVVTMTSRGAEGSVSKVNKSFgeeSKIMVE 1051
Cdd:pfam12128 536 LLHFLRKEAPDWEQSIGKVISP-------------ELLHRTD------LDPEVWDGSVGGELNLYGVKLDL---KRIDVP 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1052 DKVSFENMTVGEESKQEQLILDHLPSVTKESSLRATQPSENDKLQKELNVLKS--EQNDLRLQmeaqriclslvysthvd 1129
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalKNARLDLR----------------- 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1130 QVREYMENEKDKALCSLKEELIFAQEE--KIKELQKIHQLELQTMKtQETGDEGKPLHLLIGKLQKAVSEECSYFLQTLC 1207
Cdd:pfam12128 657 RLFDEKQSEKDKKNKALAERKDSANERlnSLEAQLKQLDKKHQAWL-EEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
570 580 590
....*....|....*....|....*....|....
gi 22538387 1208 SVLGEYYTpALKCEVNAEDKENSGDYISENEDPE 1241
Cdd:pfam12128 736 AAIAARRS-GAKAELKALETWYKRDLASLGVDPD 768
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2080-2261 |
9.30e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2080 RDVFQQEIQK-LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQ 2158
Cdd:COG4717 44 RAMLLERLEKeADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2159 ALLVSADTFQKVEdrkhfgaveAKPELSlevQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQK- 2237
Cdd:COG4717 124 LLQLLPLYQELEA---------LEAELA---ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATe 191
|
170 180
....*....|....*....|....*..
gi 22538387 2238 ---KESTTRLQELEQENKLFKDDMEKL 2261
Cdd:COG4717 192 eelQDLAEELEELQQRLAELEEELEEA 218
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1935-2247 |
9.69e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 9.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1935 ERQIQEKTDIIDRLEQELLCASNRLQELEaeqqqiqEERELLSRQKEAmkaeagpvEQQLLQETEklmkEKLEVQcQAEK 2014
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALE-------AELDALQERREA--------LQRLAEYSW----DEIDVA-SAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2015 VRDDLQKQVKALeidvEEQVSRFIELEQekntELMDLRQQNQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKLEQQL 2094
Cdd:COG4913 669 EIAELEAELERL----DASSDDLAALEE----QLEELEAELEELEEELDE----LKGEIGRLEKELEQAEEELDELQDRL 736
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2095 KVVPRFQpisehQTREVEQLANHLKEktdkcsellLSKEQLQRDIQER-NEEIEKLEFRVRELEQALlvsADTFQKVEDR 2173
Cdd:COG4913 737 EAAEDLA-----RLELRALLEERFAA---------ALGDAVERELRENlEERIDALRARLNRAEEEL---ERAMRAFNRE 799
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22538387 2174 KHFGAVEAKPELSLEVQLQAERDAIDRkekeiTNLEEQLEQFREEL-ENKNEEVQQLHMQLEIQKKESTTRLQEL 2247
Cdd:COG4913 800 WPAETADLDADLESLPEYLALLDRLEE-----DGLPEYEERFKELLnENSIEFVADLLSKLRRAIREIKERIDPL 869
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1849-2112 |
9.80e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 9.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1849 RLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYA 1928
Cdd:pfam17380 341 RMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 1929 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEE--RELLSRQKEAMKAEAGPVEQQLLQET-----EKL 2001
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERlrQQEEERKRKKLELEKEKRDRKRAEEQrrkilEKE 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22538387 2002 MKEKLEVQCQAEKVRDDLQKQVKALEIDV-EEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKmRKFLDEQAIDREHER 2080
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMRKATEE-RSRLEAMEREREMMR 579
|
250 260 270
....*....|....*....|....*....|....*...
gi 22538387 2081 DVFQQEIQKLE-----QQLKVVPRFQP-ISEHQTREVE 2112
Cdd:pfam17380 580 QIVESEKARAEyeattPITTIKPIYRPrISEYQPPDVE 617
|
|
| |
