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Conserved domains on  [gi|5835975|ref|NP_008738|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Vidua chalybeata]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 621.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     3 NHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    83 MLALTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   163 LSGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   243 TLTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 5835975   323 PSM 325
Cdd:MTH00111 321 PQL 323
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 621.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     3 NHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    83 MLALTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   163 LSGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   243 TLTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 5835975   323 PSM 325
Cdd:MTH00111 321 PQL 323
NADHdh pfam00146
NADH dehydrogenase;
12-310 2.06e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 340.60  E-value: 2.06e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     12 MVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLALTLAIS 91
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     92 IWVPLPL--PFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTL 169
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    170 SALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILF 249
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835975    250 FNpSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 241 LG-GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 2.30e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 323.62  E-value: 2.30e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    1 MTNHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFII 80
Cdd:COG1005   3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   81 TPMLALTLAISIWVPLPL--PFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:COG1005  83 APILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975  159 AVILLSGNFTLSALAVTQE-PMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYAN 237
Cdd:COG1005 163 GVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5835975  238 IMLMNTLTAILFF---NPSLLGLQQELFP--VVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005 243 MFLVSALATTLFLggwLGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 3-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 621.92  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     3 NHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITP 82
Cdd:MTH00111   1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    83 MLALTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVIL 162
Cdd:MTH00111  81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   163 LSGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00111 161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   243 TLTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLP 322
Cdd:MTH00111 241 TLTTILFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320


                 ...
gi 5835975   323 PSM 325
Cdd:MTH00111 321 PQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 4-323 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 531.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     4 HPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPM 83
Cdd:MTH00071   2 MTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    84 LALTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILL 163
Cdd:MTH00071  82 MALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   164 SGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00071 162 TGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNT 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   244 LTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLPP 323
Cdd:MTH00071 242 LSTILFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPP 321
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 4-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 527.64  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     4 HPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPM 83
Cdd:MTH00134   3 STLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPM 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    84 LALTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILL 163
Cdd:MTH00134  83 LALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   164 SGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00134 163 TGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNT 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   244 LTAILFFNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLPP 323
Cdd:MTH00134 243 LSAILFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPP 322


                 ..
gi 5835975   324 SM 325
Cdd:MTH00134 323 QL 324
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-325 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 524.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    10 LIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLALTLA 89
Cdd:MTH00104   3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    90 ISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTL 169
Cdd:MTH00104  83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   170 SALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILF 249
Cdd:MTH00104 163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 5835975   250 FNPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLPPSM 325
Cdd:MTH00104 243 LGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-323 4.40e-151

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 426.25  E-value: 4.40e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00218   1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSG 165
Cdd:MTH00218  81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   166 NFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00218 161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5835975   246 AILFFNPSLLGLQqelfpvvLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLPP 323
Cdd:MTH00218 241 VILFLGTSLTTIN-------LMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 6-325 4.00e-144

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 409.37  E-value: 4.00e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00040   3 VILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSG 165
Cdd:MTH00040  83 LFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   166 NFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00040 163 SFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   246 AILFFNPSLlgLQQELFPV---VLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAGLP 322
Cdd:MTH00040 243 VILFLGGGS--PFNEIFPIniiIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILP 320


                 ...
gi 5835975   323 PSM 325
Cdd:MTH00040 321 PNY 323
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 6-320 5.45e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 352.51  E-value: 5.45e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00195   1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSG 165
Cdd:MTH00195  81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   166 NFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00195 161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835975   246 AILFFNPSLLGLqqelfpvvLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAG 320
Cdd:MTH00195 241 TILFLGGGGTII--------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-307 8.97e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 346.86  E-value: 8.97e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     7 LINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLAL 86
Cdd:MTH00143   1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    87 TLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGN 166
Cdd:MTH00143  81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   167 FTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTA 246
Cdd:MTH00143 161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5835975   247 ILFF-NPSLLGLqqeLFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLAL 307
Cdd:MTH00143 241 VLFFgGSSVLFL---LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
NADHdh pfam00146
NADH dehydrogenase;
12-310 2.06e-117

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 340.60  E-value: 2.06e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     12 MVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLALTLAIS 91
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     92 IWVPLPL--PFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTL 169
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    170 SALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILF 249
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 5835975    250 FNpSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:pfam00146 241 LG-GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-318 6.65e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 339.44  E-value: 6.65e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00193   1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSG 165
Cdd:MTH00193  81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   166 NFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00193 161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 5835975   246 AILFFNPSLLGLqqeLFPVvlatKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICY 318
Cdd:MTH00193 241 VLMFLGGDLLSL---LFYL----KLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 6-313 2.16e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 325.45  E-value: 2.16e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSyalpILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00225   4 LLKFLIMLIC----LLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSG 165
Cdd:MTH00225  80 LILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVL 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   166 NFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLT 245
Cdd:MTH00225 160 TYNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLT 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 5835975   246 AILFFnpsllGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVS 313
Cdd:MTH00225 240 SILFF-----GGFFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-306 2.30e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 323.62  E-value: 2.30e-110
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    1 MTNHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFII 80
Cdd:COG1005   3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   81 TPMLALTLAISIWVPLPL--PFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:COG1005  83 APILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975  159 AVILLSGNFTLSALAVTQE-PMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYAN 237
Cdd:COG1005 163 GVVLLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 5835975  238 IMLMNTLTAILFF---NPSLLGLQQELFP--VVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLA 306
Cdd:COG1005 243 MFLVSALATTLFLggwLGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 6-323 9.41e-109

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 319.75  E-value: 9.41e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00054   1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIW--VPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILL 163
Cdd:MTH00054  81 LTLAFIAWgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   164 SGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00054 161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   244 LTAILFFNPSLLGLQQELFP---VVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAG 320
Cdd:MTH00054 241 FGVILFLGGWLVISGPTSYFsnfVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNA 320


                 ...
gi 5835975   321 LPP 323
Cdd:MTH00054 321 LPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 6-324 1.56e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 318.99  E-value: 1.56e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     6 ILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLA 85
Cdd:MTH00216   5 IIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLS 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    86 LTLAISIW--VPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILL 163
Cdd:MTH00216  85 FTLALIVWgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLC 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   164 SGNFTLSALAVTQEP-MYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMN 242
Cdd:MTH00216 165 VGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   243 TLTAILFFNpSLLGLQQELF--PVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHVSMPICYAG 320
Cdd:MTH00216 245 CLTTILFLG-GWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNG 323


                 ....
gi 5835975   321 LPPS 324
Cdd:MTH00216 324 PPPI 327
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-310 3.86e-105

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 310.20  E-value: 3.86e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     1 MTNHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFII 80
Cdd:PRK06076   4 FGPDLLLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    81 TPMLALTLAISIWVPLPL--PFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:PRK06076  84 APVIAFIPAFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLL 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   159 AVILLSGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:PRK06076 164 AVVLLAGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINM 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835975   239 MLMNTLTAILFF---NPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:PRK06076 244 ILVSALITTLFLggwLPPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-323 1.11e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 279.21  E-value: 1.11e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     1 MTNHPILINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFII 80
Cdd:MTH00029   1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    81 TPMLALTLAISIW--VPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILL 158
Cdd:MTH00029  81 APIISFTLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   159 AVILLSGNFTLSALAVTQEPMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:MTH00029 161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   239 MLMNTLTAILFFN------------PSLLGLQQELFPVVLA----TKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLP 302
Cdd:MTH00029 241 ILMSCMMTIFFLGgwlspldgiptpPEAFSIFEQIASSKSSfwffTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLP 320

                        330       340
                 ....*....|....*....|.
gi 5835975   303 LTLALCLWHVSMPICYAGLPP 323
Cdd:MTH00029 321 LSLGLVILTAGILIGFNGVPP 341
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 5-316 8.59e-87

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 263.18  E-value: 8.59e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975     5 PILINLIMVLSYALPILiAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPML 84
Cdd:MTH00010   2 NISFFISILLSYVMALL-AMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    85 ALTLAISIWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLS 164
Cdd:MTH00010  81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   165 GNFTLSALAVTQ-EPMYLIFPcwPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNT 243
Cdd:MTH00010 161 QTFSFSKIIMSQySWILLMII--PLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSL 238

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 5835975   244 LTAILF--FNPSLLglqqeLFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLwhVSMPI 316
Cdd:MTH00010 239 FTSVFFtsFIPSIF-----ISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPI 306
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-305 1.38e-66

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 210.53  E-value: 1.38e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    12 MVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLALTLAIS 91
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    92 IWVPLPLPFSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTL-S 170
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFvS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   171 ALAVTQEPMYLIFpcwplammwYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFF 250
Cdd:MTH00090 161 SFSLSLFVIYLPF---------LIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 5835975   251 NPSLLGLqqelfpvvlatkvLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00090 232 KFSFLML-------------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ndhA CHL00032
NADH dehydrogenase subunit 1
 10-305 4.06e-53

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 178.22  E-value: 4.06e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    10 LIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLALtla 89
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAV--- 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    90 ISIWVP-LPLPFS----LADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLS 164
Cdd:CHL00032 107 ISILLSyLVIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLS 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   165 GnfTLSALAVTQEPMYLIFPCWPL------AMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:CHL00032 187 N--SLSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   239 MLMNTLTAILF-----------FNPSLLGLQQ--ELFPVVLATKVLLLSAG-FLWV----RASYPRFRYDQLMHLLWKNF 300
Cdd:CHL00032 265 LVSSLFVTVLYlggwnlsipyiFIPELFEINKtgGVFGTTIGIFITLAKTYlFLFIsittRWTLPRLRMDQLLNLGWKFL 344


                 ....*
gi 5835975   301 LPLTL 305
Cdd:CHL00032 345 LPISL 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 20-305 2.96e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 168.56  E-value: 2.96e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    20 ILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPSTSSPILFIITPMLALTLAISIWVPLPLP 99
Cdd:MTH00058  14 ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSY 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   100 FSLADLNLGILFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTLSALAVTQEPM 179
Cdd:MTH00058  94 YSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLS 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   180 YLIFPCwpLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAILFFNPSLLGLqq 259
Cdd:MTH00058 174 VLLFPL--IYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVSI-- 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 5835975   260 elfpVVLATKVLllsagFLWVRASYPRFRYDQLMHLLWKNFLPLTL 305
Cdd:MTH00058 250 ----MLLFHLLF-----FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
7-310 1.12e-34

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 127.99  E-value: 1.12e-34
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975    7 LINLIMVLSYALPILIAVAFLTLVERKILSYMQNRKGPnivgpfGLLQPLADGIKLFIKEPIRPSTSSPIlFIITPMLAL 86
Cdd:COG0650   1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975   87 --TLAISIWVPL---PLPFSLADLNLGILFMLAMSSLAvysILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLAVI 161
Cdd:COG0650  74 aaMLLAALLVPVlttGPPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5835975  162 LLSGNFTLSALAVTQE---PMYLIFPCWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANI 238
Cdd:COG0650 151 LLAGSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 5835975  239 MLMNTLTAILFFnPSLLGLQQELFPVVLATKVLLLSAGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLW 310
Cdd:COG0650 231 FVLLSLFVNLFL-PWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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