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Conserved domains on  [gi|21361376|ref|NP_009096|]
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splicing factor 3A subunit 2 [Homo sapiens]

Protein Classification

PRP11 family protein( domain architecture ID 711366)

PRP11 family protein similar to Dictyostelium discoideum splicing factor 3A subunit 2 which is involved in pre-mRNA splicing as a component of the splicing factor SF3A complex that contributes to the assembly of the 17S U2 snRNP, and the subsequent assembly of the pre-spliceosome 'E' complex and the pre-catalytic spliceosome 'A' complex

CATH:  2.60.40.2690
Gene Ontology:  GO:0000398|GO:0008270|GO:0003676|GO:0000245

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRP11 super family cl25587
Splicing factor 3a, subunit 2 [RNA processing and modification];
1-217 2.57e-75

Splicing factor 3a, subunit 2 [RNA processing and modification];


The actual alignment was detected with superfamily member COG5246:

Pssm-ID: 227571 [Multi-domain]  Cd Length: 222  Bit Score: 235.34  E-value: 2.57e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQT 80
Cdd:COG5246   1 MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  81 NLARRAAKEAKEAP-AQPA-----PEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSA 154
Cdd:COG5246  81 NSSRRSEEKSSLGReNQTThdfrqQQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSS 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21361376 155 YEQRIEPPDRRWQYLLMAAEPYETIAFKvpsreIDKAEGKFW---THWNRETKQFFLQFHFKMEKP 217
Cdd:COG5246 161 LEQNVEEYDESFRYLVFACEPYENIAFK-----FENKEIDFLsiyEDWDAETGTYTLQFFFLEAGP 221
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 302-427 1.84e-07

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 1.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  302 HPPAPGVHPPAPGVHPPAPGVHPPTsgvhpPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHP 381
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAA-----PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 21361376  382 AAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPG 427
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
 
Name Accession Description Interval E-value
PRP11 COG5246
Splicing factor 3a, subunit 2 [RNA processing and modification];
1-217 2.57e-75

Splicing factor 3a, subunit 2 [RNA processing and modification];


Pssm-ID: 227571 [Multi-domain]  Cd Length: 222  Bit Score: 235.34  E-value: 2.57e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQT 80
Cdd:COG5246   1 MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  81 NLARRAAKEAKEAP-AQPA-----PEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSA 154
Cdd:COG5246  81 NSSRRSEEKSSLGReNQTThdfrqQQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSS 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21361376 155 YEQRIEPPDRRWQYLLMAAEPYETIAFKvpsreIDKAEGKFW---THWNRETKQFFLQFHFKMEKP 217
Cdd:COG5246 161 LEQNVEEYDESFRYLVFACEPYENIAFK-----FENKEIDFLsiyEDWDAETGTYTLQFFFLEAGP 221
SF3A2 pfam16835
Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11); SF3A2 is one of the components of the ...
 113-206 4.46e-58

Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11); SF3A2 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp21 (subunit 1). with Prp21 wrapping around Prp11.


Pssm-ID: 435601  Cd Length: 95  Bit Score: 186.21  E-value: 4.46e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   113 GRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIE-PPDRRWQYLLMAAEPYETIAFKVPSREIDKA 191
Cdd:pfam16835   1 GRPGYKVTKVRDPETGQLGLLFQVDYPEIAEGVKPRHRIMSAYEQKVEtPPDKNYQYLVIAAEPYETIAFKIPNREIDRL 80

                          90
                  ....*....|....*
gi 21361376   192 EGKFWTHWNRETKQF 206
Cdd:pfam16835  81 EGKFWTYWDPDTKEF 95
CactinC_cactus smart01050
Cactus-binding C-terminus of cactin protein; CactinC_cactus is the C-terminal 200 residues of ...
 112-218 1.54e-28

Cactus-binding C-terminus of cactin protein; CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain further upstream.


Pssm-ID: 214996  Cd Length: 129  Bit Score: 109.37  E-value: 1.54e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376    112 IGRPGYKVTK---QRDSEMGQQSLLFQIDYPE-IAEGIMPRHRFMSAYEQriEPPDRRWQYLLM-AAEPYETIAFKVPSR 186
Cdd:smart01050  20 YDWNKYNQTHydnDNPPPKIVQGYKFNIFYPDlIDKGKAPRYRIESSFEI--EKPDDDTCLLRFsAGPPYEDIAFKIVNR 97

                           90       100       110
                   ....*....|....*....|....*....|...
gi 21361376    187 EIDKAE-GKFWTHWNRetKQFFLQFHFKMEKPP 218
Cdd:smart01050  98 EWDYSHrGGFKSSFDN--GILQLQFNFKKTRYR 128
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 302-427 1.84e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 1.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  302 HPPAPGVHPPAPGVHPPAPGVHPPTsgvhpPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHP 381
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAA-----PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 21361376  382 AAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPG 427
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 312-454 1.22e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 51.19  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   312 APGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAP 391
Cdd:pfam09770 207 AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQ 286

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21361376   392 GVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGP 454
Cdd:pfam09770 287 QFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPIITHP 349
 
Name Accession Description Interval E-value
PRP11 COG5246
Splicing factor 3a, subunit 2 [RNA processing and modification];
1-217 2.57e-75

Splicing factor 3a, subunit 2 [RNA processing and modification];


Pssm-ID: 227571 [Multi-domain]  Cd Length: 222  Bit Score: 235.34  E-value: 2.57e-75
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQT 80
Cdd:COG5246   1 MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  81 NLARRAAKEAKEAP-AQPA-----PEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSA 154
Cdd:COG5246  81 NSSRRSEEKSSLGReNQTThdfrqQQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSS 160

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21361376 155 YEQRIEPPDRRWQYLLMAAEPYETIAFKvpsreIDKAEGKFW---THWNRETKQFFLQFHFKMEKP 217
Cdd:COG5246 161 LEQNVEEYDESFRYLVFACEPYENIAFK-----FENKEIDFLsiyEDWDAETGTYTLQFFFLEAGP 221
SF3A2 pfam16835
Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11); SF3A2 is one of the components of the ...
 113-206 4.46e-58

Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11); SF3A2 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp21 (subunit 1). with Prp21 wrapping around Prp11.


Pssm-ID: 435601  Cd Length: 95  Bit Score: 186.21  E-value: 4.46e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   113 GRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIE-PPDRRWQYLLMAAEPYETIAFKVPSREIDKA 191
Cdd:pfam16835   1 GRPGYKVTKVRDPETGQLGLLFQVDYPEIAEGVKPRHRIMSAYEQKVEtPPDKNYQYLVIAAEPYETIAFKIPNREIDRL 80

                          90
                  ....*....|....*
gi 21361376   192 EGKFWTHWNRETKQF 206
Cdd:pfam16835  81 EGKFWTYWDPDTKEF 95
CactinC_cactus smart01050
Cactus-binding C-terminus of cactin protein; CactinC_cactus is the C-terminal 200 residues of ...
 112-218 1.54e-28

Cactus-binding C-terminus of cactin protein; CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain further upstream.


Pssm-ID: 214996  Cd Length: 129  Bit Score: 109.37  E-value: 1.54e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376    112 IGRPGYKVTK---QRDSEMGQQSLLFQIDYPE-IAEGIMPRHRFMSAYEQriEPPDRRWQYLLM-AAEPYETIAFKVPSR 186
Cdd:smart01050  20 YDWNKYNQTHydnDNPPPKIVQGYKFNIFYPDlIDKGKAPRYRIESSFEI--EKPDDDTCLLRFsAGPPYEDIAFKIVNR 97

                           90       100       110
                   ....*....|....*....|....*....|...
gi 21361376    187 EIDKAE-GKFWTHWNRetKQFFLQFHFKMEKPP 218
Cdd:smart01050  98 EWDYSHrGGFKSSFDN--GILQLQFNFKKTRYR 128
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 52-85 1.85e-08

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 49.94  E-value: 1.85e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 21361376     52 GSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARR 85
Cdd:smart00451   2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 302-427 1.84e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.84  E-value: 1.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  302 HPPAPGVHPPAPGVHPPAPGVHPPTsgvhpPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHP 381
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAAAPAAA-----PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 21361376  382 AAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPG 427
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 303-434 3.32e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 52.79  E-value: 3.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  303 PPAPGVHPPAPGVhPPAPGVHPPTSGVHPPAPgvHPPAPGVHPPAPGVHPPAPGvhppapgVHPPPSAGVHPQAPGvHPA 382
Cdd:PRK14951 373 AAPAEKKTPARPE-AAAPAAAPVAQAAAAPAP--AAAPAAAASAPAAPPAAAPP-------APVAAPAAAAPAAAP-AAA 441

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 21361376  383 APAVHPQAPGVHPPAPGMHPQAPGVHPQPPG-VHPSAPGVHPQPPGVHPSNPG 434
Cdd:PRK14951 442 PAAVALAPAPPAQAAPETVAIPVRVAPEPAVaSAAPAPAAAPAAARLTPTEEG 494
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 303-419 4.53e-07

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 51.87  E-value: 4.53e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  303 PPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVhpqAPGVHPA 382
Cdd:PTZ00436 235 PPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAA---APAKAAA 311

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 21361376  383 APAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAP 419
Cdd:PTZ00436 312 APAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 304-433 6.18e-07

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 51.49  E-value: 6.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  304 PAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVhpqAPGVHPAA 383
Cdd:PTZ00436 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAA---PPAKAAAA 298

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 21361376  384 PAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNP 433
Cdd:PTZ00436 299 PAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAAP 348
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 312-454 1.22e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 51.19  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   312 APGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAP 391
Cdd:pfam09770 207 AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQ 286

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21361376   392 GVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGP 454
Cdd:pfam09770 287 QFHQQPPPVPVQPTQILQNPNRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPIITHP 349
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 299-390 1.59e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.69  E-value: 1.59e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   299 SGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPG 378
Cdd:pfam05109 511 SAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPTPNA 590

                          90
                  ....*....|..
gi 21361376   379 VHPAAPAVHPQA 390
Cdd:pfam05109 591 TSPTVGETSPQA 602
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 302-404 2.84e-06

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 49.18  E-value: 2.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  302 HPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHP 381
Cdd:PTZ00436 241 AAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPP 320

                         90       100
                 ....*....|....*....|...
gi 21361376  382 AAPAVHPqAPGVHPPAPGMHPQA 404
Cdd:PTZ00436 321 AKAAAPP-AKAATPPAKAAAPPA 342
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 54-78 3.69e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 43.25  E-value: 3.69e-06
                          10        20
                  ....*....|....*....|....*
gi 21361376    54 YECKLCLTLHNNEGSYLAHTQGKKH 78
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 289-454 9.35e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.06  E-value: 9.35e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  289 PPAPVVHPPASGVHPPAPGVHPPAPGVHPPApgvHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPP 368
Cdd:PRK07764 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPE---HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAA 697

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  369 SAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPP 448
Cdd:PRK07764 698 PAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777


                 ....*.
gi 21361376  449 LPSEGP 454
Cdd:PRK07764 778 PPSEEE 783
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 303-433 1.10e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 48.06  E-value: 1.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  303 PPAPGVHPPAPGvHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPgvHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPA 382
Cdd:PRK07764 608 PPEEAARPAAPA-APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH--HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPA 684

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 21361376  383 APAVHPQAPGVHPPAPGmhpqAPGVHPQPPGVHPSAPGVHPQPPGVHPSNP 433
Cdd:PRK07764 685 PAPAAPAAPAGAAPAQP----APAPAATPPAGQADDPAAQPPQAAQGASAP 731
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 317-430 1.87e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 1.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  317 PPAPGVHPPTSGVHPPAPGVhPPAPGVHPPAPGVHPPAPgvhppapgvHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPP 396
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPE-AAAPAAAPVAQAAAAPAP---------AAAPAAAASAPAAPPAAAPPAPVAAPAAAAPA 435

                         90       100       110
                 ....*....|....*....|....*....|....
gi 21361376  397 APGMHPQAPgVHPQPPGVHPSAPGVHPQPPGVHP 430
Cdd:PRK14951 436 AAPAAAPAA-VALAPAPPAQAAPETVAIPVRVAP 468
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 306-431 2.34e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 46.63  E-value: 2.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  306 PGVHPPAPGVHPPAPGVHPPtsgvhPPAPGVHPPAPGVHPPAPGVHPPApgvhppapgVHPPPSAGVHPQAPGVHPAAPA 385
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPE-----AAAPAAAPVAQAAAAPAPAAAPAA---------AASAPAAPPAAAPPAPVAAPAA 431

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 21361376  386 VHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPS---APGVHPQPPGVHPS 431
Cdd:PRK14951 432 AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPvrvAPEPAVASAAPAPA 480
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 302-395 7.85e-05

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 44.56  E-value: 7.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  302 HPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHP 381
Cdd:PTZ00436 255 APPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPP 334

                         90
                 ....*....|....
gi 21361376  382 AAPAVHPQAPGVHP 395
Cdd:PTZ00436 335 AKAAAPPAKAAAAP 348
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 275-433 8.45e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 8.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  275 PGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAP-GVHPPAPGVHPP 353
Cdd:PRK07764 619 AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPaPAAPAAPAGAAP 698

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  354 APGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPgmHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNP 433
Cdd:PRK07764 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPP--EPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 318-434 1.72e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 43.79  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  318 PAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHP----QAPGVHPAAPAVHPQAPGV 393
Cdd:PTZ00436 222 PAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPakaaAPPAKAAAPPAKAAAAPAK 301

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 21361376  394 HPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPG 434
Cdd:PTZ00436 302 AAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPA 342
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 309-434 1.76e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  309 HPPAPGVHPPAPGVHPPTSGvhPPAPGVHPPAPGVHPPAPgvhPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHP 388
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAA--APAAAPAPAAAAPAAAAA---PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 21361376  389 QAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPG 434
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
304-430 2.40e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 2.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  304 PAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVhpPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAA 383
Cdd:PRK12323 458 PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPA--PADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPD 535

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 21361376  384 PAVHPQAPGvhPPAPGMHPQAPGVHPQPPGVHP--SAPGVHPQPPGVHP 430
Cdd:PRK12323 536 DAFETLAPA--PAAAPAPRAAAATEPVVAPRPPraSASGLPDMFDGDWP 582
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 299-392 4.53e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 4.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  299 SGVHPPAPGVHPPAPGVHPPA-PGVHPPTSGVHPPAPGVHPPAPgVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAP 377
Cdd:PRK14951 401 PAPAAAPAAAASAPAAPPAAApPAPVAAPAAAAPAAAPAAAPAA-VALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

                         90
                 ....*....|....*
gi 21361376  378 GVHPAAPAVHPQAPG 392
Cdd:PRK14951 480 AAAPAAARLTPTEEG 494
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
305-427 6.10e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  305 APGVHPPAPGVHPPAPGVHPPTSGVHPP---APGVHPPAPGVHPPAPGVHPPAPG-VHPPAPGVHPPPSAGVHPQAPGVH 380
Cdd:PRK12323 391 APAAAAPAPAAPPAAPAAAPAAAAAARAvaaAPARRSPAPEALAAARQASARGPGgAPAPAPAPAAAPAAAARPAAAGPR 470

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 21361376  381 P-AAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSaPGVHPQPPG 427
Cdd:PRK12323 471 PvAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS-PAPAQPDAA 517
PHA02030 PHA02030
hypothetical protein
 312-407 6.37e-04

hypothetical protein


Pssm-ID: 222843 [Multi-domain]  Cd Length: 336  Bit Score: 41.89  E-value: 6.37e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  312 APGVHPPAPGVHPPTSGVHPpAPGVHPPAPGVHPPAPGVhPPAPGVhppapgvhpppsaGVHPQAPGVHPAAPAVHPQAP 391
Cdd:PHA02030 261 AAGSNLPAVPNVAADAGSAA-APAVPAAAAAVAQAAPSV-PQVPNV-------------AVLPDVPQVAPVAAPAAPEVP 325

                         90
                 ....*....|....*.
gi 21361376  392 GVhppaPGMhPQAPGV 407
Cdd:PHA02030 326 AV----PVV-PAAPQV 336
PHA03247 PHA03247
large tegument protein UL36; Provisional
 304-431 7.09e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 7.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   304 PAPGVHPP---APGVHPPAPGVHPPT----SGVHPPAPGVHPPAPGVHPPAPGV--HPPAPGVHPPAPGVHPPPSA--GV 372
Cdd:PHA03247 2824 PAGPLPPPtsaQPTAPPPPPGPPPPSlplgGSVAPGGDVRRRPPSRSPAAKPAApaRPPVRRLARPAVSRSTESFAlpPD 2903

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 21361376   373 HPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGvHPQPPGVHPSAPGVHPQPPGVHPS 431
Cdd:PHA03247 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP-RPQPPLAPTTDPAGAGEPSGAVPQ 2961
PHA03247 PHA03247
large tegument protein UL36; Provisional
 303-435 8.56e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 8.56e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   303 PPAPGVHPPAPgvHPPAPGvhPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGV--HPPAPGVHPPPSAGVHPQAPGVH 380
Cdd:PHA03247 2611 PAPPSPLPPDT--HAPDPP--PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVsrPRRARRLGRAAQASSPPQRPRRR 2686

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   381 PAAPAVHPQAPGVHPPAPGMHPQAP-----GVHPQPPGvhPSAPGVHPQPPGVHPSNPGV 435
Cdd:PHA03247 2687 AARPTVGSLTSLADPPPPPPTPEPAphalvSATPLPPG--PAAARQASPALPAAPAPPAV 2744
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 271-426 1.55e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  271 PSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPApgvhPPTSGVHPPAPGVHPPAPGVHPPAPgv 350
Cdd:PRK07764 635 APAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP----APAPAAPAAPAGAAPAQPAPAPAAT-- 708

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21361376  351 hPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPP 426
Cdd:PRK07764 709 -PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
305-452 1.59e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.01  E-value: 1.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  305 APGVHPPAPGVHPPA--PGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPA 382
Cdd:PRK12323 422 APARRSPAPEALAAArqASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  383 APAVHPqAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSE 452
Cdd:PRK12323 502 LPPEFA-SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASA 570
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 308-424 2.34e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 40.67  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   308 VHPPAP-----GVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPA 382
Cdd:pfam05109 473 VTSPTPagttsGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPT 552

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 21361376   383 APAVHPqAPGVHPPAPG--------MHPQAPGVHPQPPGVHPSAPGVHPQ 424
Cdd:pfam05109 553 PNATSP-TPAVTTPTPNatiptlgkTSPTSAVTTPTPNATSPTVGETSPQ 601
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 324-433 3.01e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 3.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  324 PPTSGVHPPAPGVHPPAPGVhPPAPGVHPPAPGvhppapgvhpppsagvhPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQ 403
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPE-AAAPAAAPVAQA-----------------AAAPAPAAAPAAAASAPAAPPAAAPPAPVA 427

                         90       100       110
                 ....*....|....*....|....*....|
gi 21361376  404 APGVHPQPPGVHPSAPGVHPQPPGVHPSNP 433
Cdd:PRK14951 428 APAAAAPAAAPAAAPAAVALAPAPPAQAAP 457
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 325-436 3.19e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 3.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  325 PTSGVHPPAPGVHPPAPGVhPPAPGVHPPAPGVhppaPGVHPPPSAGVHPQAPGVHPA-APAVHPQAPGVHPPAPGMHPQ 403
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAA-APAAAPAPAAAAP----AAAAAPAPAAAPQPAPAPAPApAPPSPAGNAPAGGAPSPPPAA 460

                         90       100       110
                 ....*....|....*....|....*....|...
gi 21361376  404 APGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVH 436
Cdd:PRK07764 461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
300-433 3.76e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.83  E-value: 3.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  300 GVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPG----VHPPPSAGVHPQ 375
Cdd:PRK07003 371 GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAtadrGDDAADGDAPVP 450

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 21361376  376 APGVHPAAPAVHPQAPGVHPPA-PGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNP 433
Cdd:PRK07003 451 AKANARASADSRCDERDAQPPAdSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPD 509
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 317-454 3.78e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.07  E-value: 3.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   317 PPAPGVHPPTSgvHP-----PAPGVHPPAPgVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVhPQAP 391
Cdd:PRK10263  344 PPVASVDVPPA--QPtvawqPVPGPQTGEP-VIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQP-AQQP 419

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   392 gVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQP-------PGVHPSNPGVHPPTPMPPMLRPPLPSEGP 454
Cdd:PRK10263  420 -YYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQqstfapqSTYQTEQTYQQPAAQEPLYQQPQPVEQQP 488
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 311-434 3.95e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 3.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  311 PAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPG--VHPPAP-GVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVH 387
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAapAAPAAPaPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 21361376  388 PQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPG 434
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 337-426 4.86e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 4.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  337 HPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHP 416
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAK 439

                         90
                 ....*....|
gi 21361376  417 SAPGVHPQPP 426
Cdd:PRK07994 440 KSEPAAASRA 449
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 302-436 7.23e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 38.69  E-value: 7.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  302 HPPAPGVHPPAPGVHPPAPGVHPPTsgVHPPAPgvhpPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPS---AGVHPQAPG 378
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASAQAT--AAPTAA----VAPPQAPAVPPPPASAPQQAPAVPLPETTSQllaARQQLQRAQ 433

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21361376  379 VHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPS-----APGVHPQPPGVHPSNPGVH 436
Cdd:PRK07994 434 GATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKApakkeAYRWKATNPVEVKKEPVAT 496
PHA03247 PHA03247
large tegument protein UL36; Provisional
 303-433 7.91e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 7.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   303 PPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHP---------------PAPGVHPPAPgvhppAPGVHPP 367
Cdd:PHA03247 2489 PFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPrmltwirgleelasdDAGDPPPPLP-----PAAPPAA 2563

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21361376   368 PSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGvhpQPPGVHPSAPGVHPQPPGVHPSNP 433
Cdd:PHA03247 2564 PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPV---DDRGDPRGPAPPSPLPPDTHAPDP 2626
dnaA PRK14086
chromosomal replication initiator protein DnaA;
325-425 8.73e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 38.65  E-value: 8.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376  325 PTSGVHPPAPGVHPPAPGVHPPAPGvHPPAPGvHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQA-PGVHPPAPGMHP- 402
Cdd:PRK14086  90 PSAGEPAPPPPHARRTSEPELPRPG-RRPYEG-YGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPePGAWPRAADDYGw 167

                         90       100
                 ....*....|....*....|...
gi 21361376  403 QAPGVHPQPPGVHPSAPGVHPQP 425
Cdd:PRK14086 168 QQQRLGFPPRAPYASPASYAPEQ 190
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 289-430 9.39e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.53  E-value: 9.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21361376   289 PPAPvvhppasgVHPPAPGVHPPAPGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAP--GVHPPAPGVHPPAPGVHP 366
Cdd:PRK10263  368 TGEP--------VIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPyyAPAPEQPAQQPYYAPAPE 439

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21361376   367 PPSAG---VHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSaPGVHPQPPGVHP 430
Cdd:PRK10263  440 QPVAGnawQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPE-PVVEETKPARPP 505
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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