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Conserved domains on  [gi|31542319|ref|NP_009194|]
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coatomer subunit epsilon isoform a [Homo sapiens]

Protein Classification

coatomer subunit epsilon( domain architecture ID 12057363)

coatomer subunit epsilon, a component of the coatomer complex, which is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

CATH:  1.25.40.10
Gene Ontology:  GO:0015031|GO:0005198|GO:0006888
PubMed:  20579721
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Coatomer_E pfam04733
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, ...
 17-305 2.31e-155

Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.


:

Pssm-ID: 398419 [Multi-domain]  Cd Length: 288  Bit Score: 435.76  E-value: 2.31e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319    17 DELFDVKNAFYIGSYQQCINEAQrVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESR 96
Cdd:pfam04733   1 DELFNVRNYFYLGNYQKAINESD-VTSLSEEALVERDVYMYRSYLALGSYQIVISEIKESAATPLQAVRLLAEYLNSPSR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319    97 RDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLD 176
Cdd:pfam04733  80 KESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQID 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   177 EDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNL 256
Cdd:pfam04733 160 EDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINL 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 31542319   257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305
Cdd:pfam04733 240 VVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEKEAEFDRAVQQFA 288
 
Name Accession Description Interval E-value
Coatomer_E pfam04733
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, ...
 17-305 2.31e-155

Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.


Pssm-ID: 398419 [Multi-domain]  Cd Length: 288  Bit Score: 435.76  E-value: 2.31e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319    17 DELFDVKNAFYIGSYQQCINEAQrVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESR 96
Cdd:pfam04733   1 DELFNVRNYFYLGNYQKAINESD-VTSLSEEALVERDVYMYRSYLALGSYQIVISEIKESAATPLQAVRLLAEYLNSPSR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319    97 RDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLD 176
Cdd:pfam04733  80 KESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQID 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   177 EDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNL 256
Cdd:pfam04733 160 EDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINL 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 31542319   257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305
Cdd:pfam04733 240 VVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEKEAEFDRAVQQFA 288
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 82-278 3.59e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 3.59e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319  82 QAVRMFADYLAHESRRDSIVAEL----------DR-----EMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQ---- 142
Cdd:COG2956  60 RAIRIHQKLLERDPDRAEALLELaqdylkagllDRaeellEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERllkl 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 143 -GDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGgeKLQDAYYIFQEMADKCSPTLLLLNG 221
Cdd:COG2956 140 gPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG--DYEEAIAALERALEQDPDYLPALPR 217

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 31542319 222 QAACHMAQGRWEAAEGLLQEALDKDSGYPEtLVNLIVLSQHLGKPPEVTNRYLSQLK 278
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 120-307 6.22e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 6.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   120 LLMAASIYLHDQNPDAALRALH-----QGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAwvSLATG 194
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKkllalQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA--QLLLA 681

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   195 GEKLQDAYYIFQEMADK--CSPTLLLLNGQAacHMAQGRWEAAEGLLQEALDKDSGyPETLVNL-IVLSQhLGKPPEVTN 271
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQhpKAALGFELEGDL--YLRQKDYPAAIQAYRKALKRAPS-SQNAIKLhRALLA-SGNTAEAVK 757

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 31542319   272 RYLSQLKDaHRSHPFIKEYQA----KENDFD------RLVLQYAPS 307
Cdd:TIGR02917 758 TLEAWLKT-HPNDAVLRTALAelylAQKDYDkaikhyQTVVKKAPD 802
 
Name Accession Description Interval E-value
Coatomer_E pfam04733
Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, ...
 17-305 2.31e-155

Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.


Pssm-ID: 398419 [Multi-domain]  Cd Length: 288  Bit Score: 435.76  E-value: 2.31e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319    17 DELFDVKNAFYIGSYQQCINEAQrVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESR 96
Cdd:pfam04733   1 DELFNVRNYFYLGNYQKAINESD-VTSLSEEALVERDVYMYRSYLALGSYQIVISEIKESAATPLQAVRLLAEYLNSPSR 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319    97 RDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLD 176
Cdd:pfam04733  80 KESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKGENLEAMALNVQILLKMHRIDLAEQQLKKMQQID 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   177 EDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNL 256
Cdd:pfam04733 160 EDATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINL 239

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 31542319   257 IVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305
Cdd:pfam04733 240 VVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKDLNEKEAEFDRAVQQFA 288
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 82-278 3.59e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 3.59e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319  82 QAVRMFADYLAHESRRDSIVAEL----------DR-----EMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQ---- 142
Cdd:COG2956  60 RAIRIHQKLLERDPDRAEALLELaqdylkagllDRaeellEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERllkl 139

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 143 -GDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGgeKLQDAYYIFQEMADKCSPTLLLLNG 221
Cdd:COG2956 140 gPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG--DYEEAIAALERALEQDPDYLPALPR 217

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 31542319 222 QAACHMAQGRWEAAEGLLQEALDKDSGYPEtLVNLIVLSQHLGKPPEVTNRYLSQLK 278
Cdd:COG2956 218 LAELYEKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 112-304 1.04e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 1.04e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 112 VDVTNTTFLLMAASIYLHDQNPDAALRALHQ-----GDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDA--TLTQL 184
Cdd:COG2956  37 LDPETVEAHLALGNLYRRRGEYDRAIRIHQKllerdPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDaeALRLL 116

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 185 ATAWVSLatggEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLG 264
Cdd:COG2956 117 AEIYEQE----GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                       170       180       190       200
                ....*....|....*....|....*....|....*....|...
gi 31542319 265 KPPEVTNRYLSQLK---DAHRSHPFIKEYQAKENDFDRLVLQY 304
Cdd:COG2956 193 DYEEAIAALERALEqdpDYLPALPRLAELYEKLGDPEEALELL 235
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 154-285 3.78e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 3.78e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 154 QILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGgeKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 233
Cdd:COG4783  12 QALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG--DLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 31542319 234 AAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEvtnrYLSQLKDAHRSHP 285
Cdd:COG4783  90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDE----AIAALEKALELDP 137
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 120-268 1.13e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 1.13e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 120 LLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGgeKLQ 199
Cdd:COG3914  52 AEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG--RLE 129

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31542319 200 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPE 268
Cdd:COG3914 130 EALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 120-307 6.22e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.69  E-value: 6.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   120 LLMAASIYLHDQNPDAALRALH-----QGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAwvSLATG 194
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKkllalQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLA--QLLLA 681

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319   195 GEKLQDAYYIFQEMADK--CSPTLLLLNGQAacHMAQGRWEAAEGLLQEALDKDSGyPETLVNL-IVLSQhLGKPPEVTN 271
Cdd:TIGR02917 682 AKRTESAKKIAKSLQKQhpKAALGFELEGDL--YLRQKDYPAAIQAYRKALKRAPS-SQNAIKLhRALLA-SGNTAEAVK 757

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 31542319   272 RYLSQLKDaHRSHPFIKEYQA----KENDFD------RLVLQYAPS 307
Cdd:TIGR02917 758 TLEAWLKT-HPNDAVLRTALAelylAQKDYDkaikhyQTVVKKAPD 802
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 123-268 1.63e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.06  E-value: 1.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 123 AASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWvsLATGGEkLQDAY 202
Cdd:COG3914  22 AAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL--LQALGR-YEEAL 98

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31542319 203 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPE 268
Cdd:COG3914  99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE 164
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 121-304 6.38e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 6.38e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 121 LMAASIYLHDQNPDAALRALHQ-----GDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGg 195
Cdd:COG2956  12 YFKGLNYLLNGQPDKAIDLLEEaleldPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG- 90

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 196 eKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVT---NR 272
Cdd:COG2956  91 -LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIealEK 169

                       170       180       190
                ....*....|....*....|....*....|..
gi 31542319 273 YLSQLKDAHRSHPFIKEYQAKENDFDRLVLQY 304
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAAL 201
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 116-246 6.73e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 6.73e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 116 NTTFLLMAASIYLHDQNPDAALRALHQG-----DSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVS 190
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKAlkldpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 31542319 191 LATGgeKLQDAYYIFQEMADKcSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKD 246
Cdd:COG2956 223 EKLG--DPEEALELLRKALEL-DPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
155-268 2.16e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 2.16e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 155 ILLKLDRLDLARKELKRMQDLDED--ATLTQLATAWVSLatggEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 232
Cdd:COG0457  17 AYRRLGRYEEAIEDYEKALELDPDdaEALYNLGLAYLRL----GRYEEALADYEQALELDPDDAEALNNLGLALQALGRY 92

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 31542319 233 EAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPE 268
Cdd:COG0457  93 EEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
154-305 8.06e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.29  E-value: 8.06e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 154 QILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGgeKLQDAYYIFQEmADKCSPTLL-LLNGQAACHMAQGRW 232
Cdd:COG0457  50 LAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG--RYEEALEDYDK-ALELDPDDAeALYNLGLALLELGRY 126

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31542319 233 EAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYA 305
Cdd:COG0457 127 DEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 130-268 8.39e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 36.48  E-value: 8.39e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542319 130 DQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMA 209
Cdd:COG5010   2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 31542319 210 DKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPE 268
Cdd:COG5010  82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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