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Conserved domains on  [gi|6320380|ref|NP_010460|]
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mitochondrial 37S ribosomal protein RSM24 [Saccharomyces cerevisiae S288C]

Protein Classification

mS35 family ribosomal protein( domain architecture ID 10562914)

mS35 family ribosomal protein such as fungal 37S ribosomal protein S24, a component of the mitochondrial ribosome (mitoribosome), a dedicated translation machinery responsible for the synthesis of mitochondrial genome-encoded proteins, including at least some of the essential transmembrane subunits of the mitochondrial respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRP-S28 pfam10213
Mitochondrial ribosomal subunit protein; This is a conserved region of approx. 125 residues of ...
 171-299 5.24e-66

Mitochondrial ribosomal subunit protein; This is a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae the protein is MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial ribosome has 29 distinct proteins in the small subunit and these have homologs in, for example, Drosophila melanogaster, Caenorhabditis elegans, and in the genomes of several fungi.


:

Pssm-ID: 463002  Cd Length: 126  Bit Score: 203.38  E-value: 5.24e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320380    171 EYKRPsPESHPVTYRYTSYVGEEHPNSRKVVLSVKTKELGLEEKSLHKFRILARSRYDHTTDIFKMSSDKFEHASQNARY 250
Cdd:pfam10213   1 PFKPP-PETQPLRFRYTSYMGEEHPASRKVVLEVKPADLGLEEKQLHKLKLLAGPRYNPETDIIKMSSEKFESAAQNKRY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 6320380    251 LHDILQRLLAESKDLTeDDFSDVPLDTRHTIAKSLRKKKrDYEFPEHWK 299
Cdd:pfam10213  80 LGDILEKLLKEAKDLT-DDFSDVPLDTRHHKAKKRRKRK-DYEFPEEWK 126
 
Name Accession Description Interval E-value
MRP-S28 pfam10213
Mitochondrial ribosomal subunit protein; This is a conserved region of approx. 125 residues of ...
 171-299 5.24e-66

Mitochondrial ribosomal subunit protein; This is a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae the protein is MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial ribosome has 29 distinct proteins in the small subunit and these have homologs in, for example, Drosophila melanogaster, Caenorhabditis elegans, and in the genomes of several fungi.


Pssm-ID: 463002  Cd Length: 126  Bit Score: 203.38  E-value: 5.24e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320380    171 EYKRPsPESHPVTYRYTSYVGEEHPNSRKVVLSVKTKELGLEEKSLHKFRILARSRYDHTTDIFKMSSDKFEHASQNARY 250
Cdd:pfam10213   1 PFKPP-PETQPLRFRYTSYMGEEHPASRKVVLEVKPADLGLEEKQLHKLKLLAGPRYNPETDIIKMSSEKFESAAQNKRY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 6320380    251 LHDILQRLLAESKDLTeDDFSDVPLDTRHTIAKSLRKKKrDYEFPEHWK 299
Cdd:pfam10213  80 LGDILEKLLKEAKDLT-DDFSDVPLDTRHHKAKKRRKRK-DYEFPEEWK 126
 
Name Accession Description Interval E-value
MRP-S28 pfam10213
Mitochondrial ribosomal subunit protein; This is a conserved region of approx. 125 residues of ...
 171-299 5.24e-66

Mitochondrial ribosomal subunit protein; This is a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae the protein is MRP-S24 whereas in humans it is MRP-S28. The human mitochondrial ribosome has 29 distinct proteins in the small subunit and these have homologs in, for example, Drosophila melanogaster, Caenorhabditis elegans, and in the genomes of several fungi.


Pssm-ID: 463002  Cd Length: 126  Bit Score: 203.38  E-value: 5.24e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320380    171 EYKRPsPESHPVTYRYTSYVGEEHPNSRKVVLSVKTKELGLEEKSLHKFRILARSRYDHTTDIFKMSSDKFEHASQNARY 250
Cdd:pfam10213   1 PFKPP-PETQPLRFRYTSYMGEEHPASRKVVLEVKPADLGLEEKQLHKLKLLAGPRYNPETDIIKMSSEKFESAAQNKRY 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 6320380    251 LHDILQRLLAESKDLTeDDFSDVPLDTRHTIAKSLRKKKrDYEFPEHWK 299
Cdd:pfam10213  80 LGDILEKLLKEAKDLT-DDFSDVPLDTRHHKAKKRRKRK-DYEFPEEWK 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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