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Conserved domains on  [gi|6320538|ref|NP_010618|]
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GPI-anchor transamidase [Saccharomyces cerevisiae S288C]

Protein Classification

caspase family protein( domain architecture ID 1724)

caspase family protein similar to caspases which are cysteine class enzymes that drive the terminal stages of apoptosis as well as other cellular remodeling and inflammatory events

CATH:  3.40.50.1460
EC:  3.4.22.-
Gene Ontology:  GO:0008234
MEROPS:  C14
PubMed:  9357314
SCOP:  4003593

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CASc super family cl00042
Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent ...
38-277 5.74e-50

Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.


The actual alignment was detected with superfamily member pfam01650:

Pssm-ID: 444667  Cd Length: 257  Bit Score: 169.39  E-value: 5.74e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538     38 NWAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAiDLYgDSVEVDYRGY 117
Cdd:pfam01650   1 LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFNKPNGT-DVY-KGVPKDYTGN 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538    118 EVTVENFIRLLTDrwTEDHPKSKRLLTD-ENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMI 196
Cdd:pfam01650  79 DVTPRNFLAVLLG--DKSALGSGKVLKSgPNDNVFIYFTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538    197 DTCQANTMYS-KFYSPNILAVGSSEMDESSYS-HHSDVEIGVAVIDRFTYyclDFLEQIDKN--STLTLQDLFDSFTFEK 272
Cdd:pfam01650 157 EACESGSMFEgLPKDINVYATTAANADESSYGcYCPDPEDGTYLGDLFSV---NWMEDSDDHdlSKETLEQQFELVKNRT 233

                  ....*
gi 6320538    273 IHSHV 277
Cdd:pfam01650 234 TGSHV 238
 
Name Accession Description Interval E-value
Peptidase_C13 pfam01650
Peptidase C13 family; Members of this family are asparaginyl peptidases. The blood fluke ...
38-277 5.74e-50

Peptidase C13 family; Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed.


Pssm-ID: 396290  Cd Length: 257  Bit Score: 169.39  E-value: 5.74e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538     38 NWAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAiDLYgDSVEVDYRGY 117
Cdd:pfam01650   1 LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFNKPNGT-DVY-KGVPKDYTGN 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538    118 EVTVENFIRLLTDrwTEDHPKSKRLLTD-ENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMI 196
Cdd:pfam01650  79 DVTPRNFLAVLLG--DKSALGSGKVLKSgPNDNVFIYFTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538    197 DTCQANTMYS-KFYSPNILAVGSSEMDESSYS-HHSDVEIGVAVIDRFTYyclDFLEQIDKN--STLTLQDLFDSFTFEK 272
Cdd:pfam01650 157 EACESGSMFEgLPKDINVYATTAANADESSYGcYCPDPEDGTYLGDLFSV---NWMEDSDDHdlSKETLEQQFELVKNRT 233

                  ....*
gi 6320538    273 IHSHV 277
Cdd:pfam01650 234 TGSHV 238
 
Name Accession Description Interval E-value
Peptidase_C13 pfam01650
Peptidase C13 family; Members of this family are asparaginyl peptidases. The blood fluke ...
38-277 5.74e-50

Peptidase C13 family; Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed.


Pssm-ID: 396290  Cd Length: 257  Bit Score: 169.39  E-value: 5.74e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538     38 NWAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAiDLYgDSVEVDYRGY 117
Cdd:pfam01650   1 LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFNKPNGT-DVY-KGVPKDYTGN 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538    118 EVTVENFIRLLTDrwTEDHPKSKRLLTD-ENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMI 196
Cdd:pfam01650  79 DVTPRNFLAVLLG--DKSALGSGKVLKSgPNDNVFIYFTDHGAPGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320538    197 DTCQANTMYS-KFYSPNILAVGSSEMDESSYS-HHSDVEIGVAVIDRFTYyclDFLEQIDKN--STLTLQDLFDSFTFEK 272
Cdd:pfam01650 157 EACESGSMFEgLPKDINVYATTAANADESSYGcYCPDPEDGTYLGDLFSV---NWMEDSDDHdlSKETLEQQFELVKNRT 233

                  ....*
gi 6320538    273 IHSHV 277
Cdd:pfam01650 234 TGSHV 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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