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Conserved domains on  [gi|6320555|ref|NP_010635|]
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Pal1p [Saccharomyces cerevisiae S288C]

Protein Classification

Pal1 family protein( domain architecture ID 10550865)

Pal1 family protein such as yeast Pal1p and Pal2p/Yhr097cp which are involved in the early step of endocytosis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pal1 pfam08316
Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the ...
 236-369 9.37e-70

Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the maintenance of cylindrical cellular morphology. It localizes to sites of active growth. Pal1 physically interacts and displays overlapping localization with the Huntingtin-interacting-protein (Hip1)-related protein Sla2p/End4p.


:

Pssm-ID: 400558  Cd Length: 135  Bit Score: 218.98  E-value: 9.37e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320555    236 DTIDKLDVTGLFG-GSFHHDGPFDAVTPHRNKNNKAAPVLAFPVDGPNSTIGGA--STKKSALDEVFGR-DDTDDSDiyq 311
Cdd:pfam08316   1 DTIDKLDVTGIFGgGLFHHDGPFDACTPHRNKNSKRAPVQAFPKDGPNNSIGGAgpLNKKSDMDEFFGRgDDEAFND--- 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 6320555    312 YSSQTLRRGGDTQDAIKANVGNVQQMDAKNKTELVHGPVTAGLGSSTFLDGAPASSAA 369
Cdd:pfam08316  78 FSTGRKSNSSSTTDAIKPSSPSVTQFDPKTKAEPVHGPETAGLGSSTFLDGAPASRAA 135
 
Name Accession Description Interval E-value
Pal1 pfam08316
Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the ...
 236-369 9.37e-70

Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the maintenance of cylindrical cellular morphology. It localizes to sites of active growth. Pal1 physically interacts and displays overlapping localization with the Huntingtin-interacting-protein (Hip1)-related protein Sla2p/End4p.


Pssm-ID: 400558  Cd Length: 135  Bit Score: 218.98  E-value: 9.37e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320555    236 DTIDKLDVTGLFG-GSFHHDGPFDAVTPHRNKNNKAAPVLAFPVDGPNSTIGGA--STKKSALDEVFGR-DDTDDSDiyq 311
Cdd:pfam08316   1 DTIDKLDVTGIFGgGLFHHDGPFDACTPHRNKNSKRAPVQAFPKDGPNNSIGGAgpLNKKSDMDEFFGRgDDEAFND--- 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 6320555    312 YSSQTLRRGGDTQDAIKANVGNVQQMDAKNKTELVHGPVTAGLGSSTFLDGAPASSAA 369
Cdd:pfam08316  78 FSTGRKSNSSSTTDAIKPSSPSVTQFDPKTKAEPVHGPETAGLGSSTFLDGAPASRAA 135
 
Name Accession Description Interval E-value
Pal1 pfam08316
Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the ...
 236-369 9.37e-70

Pal1 cell morphology protein; Pal1 is a membrane associated protein that is involved in the maintenance of cylindrical cellular morphology. It localizes to sites of active growth. Pal1 physically interacts and displays overlapping localization with the Huntingtin-interacting-protein (Hip1)-related protein Sla2p/End4p.


Pssm-ID: 400558  Cd Length: 135  Bit Score: 218.98  E-value: 9.37e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320555    236 DTIDKLDVTGLFG-GSFHHDGPFDAVTPHRNKNNKAAPVLAFPVDGPNSTIGGA--STKKSALDEVFGR-DDTDDSDiyq 311
Cdd:pfam08316   1 DTIDKLDVTGIFGgGLFHHDGPFDACTPHRNKNSKRAPVQAFPKDGPNNSIGGAgpLNKKSDMDEFFGRgDDEAFND--- 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 6320555    312 YSSQTLRRGGDTQDAIKANVGNVQQMDAKNKTELVHGPVTAGLGSSTFLDGAPASSAA 369
Cdd:pfam08316  78 FSTGRKSNSSSTTDAIKPSSPSVTQFDPKTKAEPVHGPETAGLGSSTFLDGAPASRAA 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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