Rba50p [Saccharomyces cerevisiae S288C]
RPAP1 family protein( domain architecture ID 10554390)
RPAP1 family protein similar to human RNA polymerase II-associated protein 1 (RPAP1) that is required for interaction of the RNA polymerase II complex with acetylated histone H3
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
RPAP1_C | pfam08620 | RPAP1-like, C-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in ... |
289-357 | 6.83e-41 | |||||
RPAP1-like, C-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans. : Pssm-ID: 462538 Cd Length: 69 Bit Score: 139.98 E-value: 6.83e-41
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RPAP1_N | pfam08621 | RPAP1-like, N-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in ... |
79-124 | 1.33e-14 | |||||
RPAP1-like, N-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans. : Pssm-ID: 462539 [Multi-domain] Cd Length: 46 Bit Score: 67.54 E-value: 1.33e-14
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235kDa-fam super family | cl31124 | reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
62-289 | 1.76e-03 | |||||
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii. The actual alignment was detected with superfamily member TIGR01612: Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 1.76e-03
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Name | Accession | Description | Interval | E-value | |||||
RPAP1_C | pfam08620 | RPAP1-like, C-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in ... |
289-357 | 6.83e-41 | |||||
RPAP1-like, C-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans. Pssm-ID: 462538 Cd Length: 69 Bit Score: 139.98 E-value: 6.83e-41
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RPAP1_N | pfam08621 | RPAP1-like, N-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in ... |
79-124 | 1.33e-14 | |||||
RPAP1-like, N-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans. Pssm-ID: 462539 [Multi-domain] Cd Length: 46 Bit Score: 67.54 E-value: 1.33e-14
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235kDa-fam | TIGR01612 | reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
62-289 | 1.76e-03 | |||||
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii. Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 1.76e-03
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Name | Accession | Description | Interval | E-value | |||||
RPAP1_C | pfam08620 | RPAP1-like, C-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in ... |
289-357 | 6.83e-41 | |||||
RPAP1-like, C-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans. Pssm-ID: 462538 Cd Length: 69 Bit Score: 139.98 E-value: 6.83e-41
|
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RPAP1_N | pfam08621 | RPAP1-like, N-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in ... |
79-124 | 1.33e-14 | |||||
RPAP1-like, N-terminal; Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans. Pssm-ID: 462539 [Multi-domain] Cd Length: 46 Bit Score: 67.54 E-value: 1.33e-14
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235kDa-fam | TIGR01612 | reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
62-289 | 1.76e-03 | |||||
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii. Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 1.76e-03
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Blast search parameters | ||||
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