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Conserved domains on  [gi|6321359|ref|NP_011436|]
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Kxd1p [Saccharomyces cerevisiae S288C]

Protein Classification

KxDL motif-containing protein( domain architecture ID 10562996)

KxDL motif-containing protein similar to Saccharomyces cerevisiae biogenesis of lysosome-related organelles complex 1 (BLOC-1 ) subunit KXD1, a component of the BLOC-1 complex that is involved in endosomal cargo sorting

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KxDL pfam10241
Uncharacterized conserved protein; This is a family of short proteins which are conserved over ...
 115-193 4.79e-21

Uncharacterized conserved protein; This is a family of short proteins which are conserved over a region of 80 residues. There is a characteriztic KxDL motif towards the C-terminus. The function is unknown.


:

Pssm-ID: 463018  Cd Length: 80  Bit Score: 82.96  E-value: 4.79e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6321359    115 SLKQSIDSADFSEALSLQTKTSAVINSKSLELKQYIDEMKSRLTQLQEKFENGEATSKKIKRDLETSRKNIDYLNAALR 193
Cdd:pfam10241   1 RLTQAVDSEDLDEILALQAQTSGRLNKKNRELLNLNALSQERLAKLRARFAQGTKLLKEMKKDLEWIFKKIRSLKAKLA 79
 
Name Accession Description Interval E-value
KxDL pfam10241
Uncharacterized conserved protein; This is a family of short proteins which are conserved over ...
 115-193 4.79e-21

Uncharacterized conserved protein; This is a family of short proteins which are conserved over a region of 80 residues. There is a characteriztic KxDL motif towards the C-terminus. The function is unknown.


Pssm-ID: 463018  Cd Length: 80  Bit Score: 82.96  E-value: 4.79e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6321359    115 SLKQSIDSADFSEALSLQTKTSAVINSKSLELKQYIDEMKSRLTQLQEKFENGEATSKKIKRDLETSRKNIDYLNAALR 193
Cdd:pfam10241   1 RLTQAVDSEDLDEILALQAQTSGRLNKKNRELLNLNALSQERLAKLRARFAQGTKLLKEMKKDLEWIFKKIRSLKAKLA 79
 
Name Accession Description Interval E-value
KxDL pfam10241
Uncharacterized conserved protein; This is a family of short proteins which are conserved over ...
 115-193 4.79e-21

Uncharacterized conserved protein; This is a family of short proteins which are conserved over a region of 80 residues. There is a characteriztic KxDL motif towards the C-terminus. The function is unknown.


Pssm-ID: 463018  Cd Length: 80  Bit Score: 82.96  E-value: 4.79e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6321359    115 SLKQSIDSADFSEALSLQTKTSAVINSKSLELKQYIDEMKSRLTQLQEKFENGEATSKKIKRDLETSRKNIDYLNAALR 193
Cdd:pfam10241   1 RLTQAVDSEDLDEILALQAQTSGRLNKKNRELLNLNALSQERLAKLRARFAQGTKLLKEMKKDLEWIFKKIRSLKAKLA 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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