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Conserved domains on  [gi|6321513|ref|NP_011590|]
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mitochondrial 54S ribosomal protein YmL25 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mitoc_mL59 pfam18126
Mitochondrial ribosomal protein mL59; This domain is a protein found in mitochondrial ribosome ...
 13-138 4.79e-33

Mitochondrial ribosomal protein mL59; This domain is a protein found in mitochondrial ribosome 54S large sub unit present in species such as Saccharomyces cerevisiae. The domain used to be referred to as MRP25 but is now called mL59 protein. mL59 is known to partially stabilize a change in the rRNA path prior to helix 82-ES1 ultimately leading to the stabilization of the phosphate backbone of the tRNA acceptor stem. It is worth noting that the domain is encoded in the nucleus and imported from the cytoplasm.


:

Pssm-ID: 436292  Cd Length: 129  Bit Score: 113.61  E-value: 4.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321513     13 KLKSFFQRYPPSikySPVSTSTKAINANPFLPNKHPVTQRFHDPKYSLRRMSDVYKLALRYGVEEFLPP-----IENTKK 87
Cdd:pfam18126   2 RLKRFFARYPPS---ALAASAAPPSPANPFLPRKNPVTGRWAPPKYSLRRQADLVKLARKYGVLELLPPgpkspRFKERR 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6321513     88 LFFEEKYNKKTLMKGVLLPKGHKHELKLNEKLKKREEALKKVDELIASKKG 138
Cdd:pfam18126  79 RVEAGLRVKGTGAGRKKMFKGHKWERTKEERLEKRRKAMENMPKRIREWKE 129
 
Name Accession Description Interval E-value
Mitoc_mL59 pfam18126
Mitochondrial ribosomal protein mL59; This domain is a protein found in mitochondrial ribosome ...
 13-138 4.79e-33

Mitochondrial ribosomal protein mL59; This domain is a protein found in mitochondrial ribosome 54S large sub unit present in species such as Saccharomyces cerevisiae. The domain used to be referred to as MRP25 but is now called mL59 protein. mL59 is known to partially stabilize a change in the rRNA path prior to helix 82-ES1 ultimately leading to the stabilization of the phosphate backbone of the tRNA acceptor stem. It is worth noting that the domain is encoded in the nucleus and imported from the cytoplasm.


Pssm-ID: 436292  Cd Length: 129  Bit Score: 113.61  E-value: 4.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321513     13 KLKSFFQRYPPSikySPVSTSTKAINANPFLPNKHPVTQRFHDPKYSLRRMSDVYKLALRYGVEEFLPP-----IENTKK 87
Cdd:pfam18126   2 RLKRFFARYPPS---ALAASAAPPSPANPFLPRKNPVTGRWAPPKYSLRRQADLVKLARKYGVLELLPPgpkspRFKERR 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6321513     88 LFFEEKYNKKTLMKGVLLPKGHKHELKLNEKLKKREEALKKVDELIASKKG 138
Cdd:pfam18126  79 RVEAGLRVKGTGAGRKKMFKGHKWERTKEERLEKRRKAMENMPKRIREWKE 129
 
Name Accession Description Interval E-value
Mitoc_mL59 pfam18126
Mitochondrial ribosomal protein mL59; This domain is a protein found in mitochondrial ribosome ...
 13-138 4.79e-33

Mitochondrial ribosomal protein mL59; This domain is a protein found in mitochondrial ribosome 54S large sub unit present in species such as Saccharomyces cerevisiae. The domain used to be referred to as MRP25 but is now called mL59 protein. mL59 is known to partially stabilize a change in the rRNA path prior to helix 82-ES1 ultimately leading to the stabilization of the phosphate backbone of the tRNA acceptor stem. It is worth noting that the domain is encoded in the nucleus and imported from the cytoplasm.


Pssm-ID: 436292  Cd Length: 129  Bit Score: 113.61  E-value: 4.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321513     13 KLKSFFQRYPPSikySPVSTSTKAINANPFLPNKHPVTQRFHDPKYSLRRMSDVYKLALRYGVEEFLPP-----IENTKK 87
Cdd:pfam18126   2 RLKRFFARYPPS---ALAASAAPPSPANPFLPRKNPVTGRWAPPKYSLRRQADLVKLARKYGVLELLPPgpkspRFKERR 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 6321513     88 LFFEEKYNKKTLMKGVLLPKGHKHELKLNEKLKKREEALKKVDELIASKKG 138
Cdd:pfam18126  79 RVEAGLRVKGTGAGRKKMFKGHKWERTKEERLEKRRKAMENMPKRIREWKE 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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