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Conserved domains on  [gi|6323454|ref|NP_013526|]
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Dck1p [Saccharomyces cerevisiae S288C]

Protein Classification

DHR2_DOCK domain-containing protein( domain architecture ID 10184840)

DHR2_DOCK domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DHR2_DOCK cd11684
Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins; DOCK proteins ...
1417-1815 5.78e-123

Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins; DOCK proteins comprise a family of atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate the small GTPases Rac and Cdc42 by exchanging bound GDP for free GTP. They are also called the CZH (CED-5, Dock180, and MBC-zizimin homology) family, after the first family members identified. Dock180 was first isolated as a binding partner for the adaptor protein Crk. The Caenorhabditis elegans protein, Ced-5, is essential for cell migration and phagocytosis, while the Drosophila ortholog, Myoblast city (MBC), is necessary for myoblast fusion and dorsal closure. DOCKs are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1 (or Dock180), 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1, and DHR-2 (also called CZH2 or Docker). This alignment model represents the DHR-2 domain of DOCK proteins, which contains the catalytic GEF activity for Rac and/or Cdc42.


:

Pssm-ID: 212566 [Multi-domain]  Cd Length: 392  Bit Score: 393.20  E-value: 5.78e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDSNDTLEAIS-FPPLPEQSSFERKEYLLKESARNFSRGQKPEKA 1495
Cdd:cd11684    1 ELYIRYLHKLADLHEERGNYVEAALCLLLHADLYAWDLKALVPALAeSLSFPEQTSFERKEALYKKAIDLFDKGKAWEFA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1496 LAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDR 1575
Cdd:cd11684   81 IALYKELIPQY-ENNFDYAKLSEVHRKIAKLYEKIAEKDRLFPTYFRVGFYGKGFPESLRGKEFIYRGPEFERLGDFCER 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1576 LLRSYHGSNIVHSQEEVDMLLMNpPMGKYIHVASVEPCLSISDNYNSSDkkssinNKVRMYIENRDLRTFSNSRRLPGAK 1655
Cdd:cd11684  160 LKSLYPGAEIIQSSEEPDDEILD-SEGQYIQITSVEPYFDDEDLVSRAA------PGVRQFYRNNNINTFVYERPFTKGG 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1656 -----GVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENMCNKtlkdhgDVNDLFTE 1730
Cdd:cd11684  233 kksqnEITDQWKERTILTTEESFPTILRRSEVVSIEEIELSPIENAIEDIEKKTEELRSLINKYRS------GDSPNVNP 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1731 LSTNITGTISAPVNGGIS-QYKAFLEPS-TSKQFSTDDLGRLTLAFDELVAVLGRCLTLHAELLPSkDLKPSHDLLVRLF 1808
Cdd:cd11684  307 LQMLLQGTVDAAVNGGPVaYAEAFLSEEyLSNYPEAEKVKKLKEAFEEFLEILKRGLALHAKLCPP-EMAPLHEELEEGF 385

                 ....*..
gi 6323454  1809 EENFAEE 1815
Cdd:cd11684  386 EKLFKEL 392
 
Name Accession Description Interval E-value
DHR2_DOCK cd11684
Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins; DOCK proteins ...
1417-1815 5.78e-123

Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins; DOCK proteins comprise a family of atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate the small GTPases Rac and Cdc42 by exchanging bound GDP for free GTP. They are also called the CZH (CED-5, Dock180, and MBC-zizimin homology) family, after the first family members identified. Dock180 was first isolated as a binding partner for the adaptor protein Crk. The Caenorhabditis elegans protein, Ced-5, is essential for cell migration and phagocytosis, while the Drosophila ortholog, Myoblast city (MBC), is necessary for myoblast fusion and dorsal closure. DOCKs are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1 (or Dock180), 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1, and DHR-2 (also called CZH2 or Docker). This alignment model represents the DHR-2 domain of DOCK proteins, which contains the catalytic GEF activity for Rac and/or Cdc42.


Pssm-ID: 212566 [Multi-domain]  Cd Length: 392  Bit Score: 393.20  E-value: 5.78e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDSNDTLEAIS-FPPLPEQSSFERKEYLLKESARNFSRGQKPEKA 1495
Cdd:cd11684    1 ELYIRYLHKLADLHEERGNYVEAALCLLLHADLYAWDLKALVPALAeSLSFPEQTSFERKEALYKKAIDLFDKGKAWEFA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1496 LAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDR 1575
Cdd:cd11684   81 IALYKELIPQY-ENNFDYAKLSEVHRKIAKLYEKIAEKDRLFPTYFRVGFYGKGFPESLRGKEFIYRGPEFERLGDFCER 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1576 LLRSYHGSNIVHSQEEVDMLLMNpPMGKYIHVASVEPCLSISDNYNSSDkkssinNKVRMYIENRDLRTFSNSRRLPGAK 1655
Cdd:cd11684  160 LKSLYPGAEIIQSSEEPDDEILD-SEGQYIQITSVEPYFDDEDLVSRAA------PGVRQFYRNNNINTFVYERPFTKGG 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1656 -----GVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENMCNKtlkdhgDVNDLFTE 1730
Cdd:cd11684  233 kksqnEITDQWKERTILTTEESFPTILRRSEVVSIEEIELSPIENAIEDIEKKTEELRSLINKYRS------GDSPNVNP 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1731 LSTNITGTISAPVNGGIS-QYKAFLEPS-TSKQFSTDDLGRLTLAFDELVAVLGRCLTLHAELLPSkDLKPSHDLLVRLF 1808
Cdd:cd11684  307 LQMLLQGTVDAAVNGGPVaYAEAFLSEEyLSNYPEAEKVKKLKEAFEEFLEILKRGLALHAKLCPP-EMAPLHEELEEGF 385

                 ....*..
gi 6323454  1809 EENFAEE 1815
Cdd:cd11684  386 EKLFKEL 392
 
Name Accession Description Interval E-value
DHR2_DOCK cd11684
Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins; DOCK proteins ...
1417-1815 5.78e-123

Dock Homology Region 2, a GEF domain, of Dedicator of Cytokinesis proteins; DOCK proteins comprise a family of atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate the small GTPases Rac and Cdc42 by exchanging bound GDP for free GTP. They are also called the CZH (CED-5, Dock180, and MBC-zizimin homology) family, after the first family members identified. Dock180 was first isolated as a binding partner for the adaptor protein Crk. The Caenorhabditis elegans protein, Ced-5, is essential for cell migration and phagocytosis, while the Drosophila ortholog, Myoblast city (MBC), is necessary for myoblast fusion and dorsal closure. DOCKs are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1 (or Dock180), 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1, and DHR-2 (also called CZH2 or Docker). This alignment model represents the DHR-2 domain of DOCK proteins, which contains the catalytic GEF activity for Rac and/or Cdc42.


Pssm-ID: 212566 [Multi-domain]  Cd Length: 392  Bit Score: 393.20  E-value: 5.78e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDSNDTLEAIS-FPPLPEQSSFERKEYLLKESARNFSRGQKPEKA 1495
Cdd:cd11684    1 ELYIRYLHKLADLHEERGNYVEAALCLLLHADLYAWDLKALVPALAeSLSFPEQTSFERKEALYKKAIDLFDKGKAWEFA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1496 LAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDR 1575
Cdd:cd11684   81 IALYKELIPQY-ENNFDYAKLSEVHRKIAKLYEKIAEKDRLFPTYFRVGFYGKGFPESLRGKEFIYRGPEFERLGDFCER 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1576 LLRSYHGSNIVHSQEEVDMLLMNpPMGKYIHVASVEPCLSISDNYNSSDkkssinNKVRMYIENRDLRTFSNSRRLPGAK 1655
Cdd:cd11684  160 LKSLYPGAEIIQSSEEPDDEILD-SEGQYIQITSVEPYFDDEDLVSRAA------PGVRQFYRNNNINTFVYERPFTKGG 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1656 -----GVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENMCNKtlkdhgDVNDLFTE 1730
Cdd:cd11684  233 kksqnEITDQWKERTILTTEESFPTILRRSEVVSIEEIELSPIENAIEDIEKKTEELRSLINKYRS------GDSPNVNP 306
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1731 LSTNITGTISAPVNGGIS-QYKAFLEPS-TSKQFSTDDLGRLTLAFDELVAVLGRCLTLHAELLPSkDLKPSHDLLVRLF 1808
Cdd:cd11684  307 LQMLLQGTVDAAVNGGPVaYAEAFLSEEyLSNYPEAEKVKKLKEAFEEFLEILKRGLALHAKLCPP-EMAPLHEELEEGF 385

                 ....*..
gi 6323454  1809 EENFAEE 1815
Cdd:cd11684  386 EKLFKEL 392
DHR2_DOCK_B cd11696
Dock Homology Region 2, a GEF domain, of Class B Dedicator of Cytokinesis proteins; DOCK ...
1417-1808 1.85e-46

Dock Homology Region 2, a GEF domain, of Class B Dedicator of Cytokinesis proteins; DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate small GTPases by exchanging bound GDP for free GTP. They are divided into four classes (A-D) based on sequence similarity and domain architecture; class B includes Dock3 and 4. Dock3 is a specific GEF for Rac and it regulates N-cadherin dependent cell-cell adhesion, cell polarity, and neuronal morphology. It promotes axonal growth by stimulating actin polymerization and microtubule assembly. Dock4 activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. It plays a role in regulating dendritic growth and branching in hippocampal neurons, where it is highly expressed. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of class B DOCKs, which contains the catalytic GEF activity for Rac and/or Cdc42. Class B DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212569  Cd Length: 391  Bit Score: 173.01  E-value: 1.85e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDSnDTLEAisFPPLPEQSSFERKEYLLKESARNFSRGQKPEKAL 1496
Cdd:cd11696    1 EMYLRYIYKLHDLHLQAENYTEAAFTLLLYAELLSWSS-DPLPA--DLHHPSQPEWQRKEALYLKILQYFDRGKCWEKGI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1497 AVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDRL 1576
Cdd:cd11696   78 PLCRELAELY-ESLYDYAKLSHILRMEASFYDNILTQLRPEPEYFRVGFYGKGFPLFLRNKQFVYRGLDYERIGAFTQRL 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1577 LRSYHGSNIVHSQEEVDMLLMNPPmGKYIHVASVEPclsISDnYNSSDKKSSINNKVRMYIENRDLRTFSNSRrlPGAKG 1656
Cdd:cd11696  157 QSEFPQAHILTKNTPPDDAILQAD-GQYIQICNVKP---VPE-RRPVLQMVGVPDKVRSFYRVNDVRKFQYDR--PIHKG 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1657 VTD-------LWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENMCnkTLKDHGDVNdlft 1729
Cdd:cd11696  230 PIDkdnefksLWIERTTLVTEHSLPGILRWFEVVSREVEEIPPVENACETVENKNQELRSLISQY--QADPTRNIN---- 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1730 ELSTNITGTISAPVNGGISQYK-AFLepstSKQFSTDDLG------RLTLAFDELVAVLGRCLTLHAELLPSkDLKPSHD 1802
Cdd:cd11696  304 PFSMRLQGVIDAAVNGGIAKYQeAFF----TPEFILSHPEdaehiaRLRELILEQVQILEAGLALHGKLAPP-EVRPLHK 378

                 ....*.
gi 6323454  1803 LLVRLF 1808
Cdd:cd11696  379 RLVERF 384
DHR2_DOCK5 cd11708
Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis 5; Dock5 is an ...
1425-1818 3.01e-37

Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis 5; Dock5 is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates small GTPases by exchanging bound GDP for free GTP. It functions upstream of Rac1 to regulate osteoclast function. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class A includes Dock1, 2 and 5. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock5, which contains the catalytic GEF activity for Rac and/or Cdc42. Class A DOCKs, like Dock5, are specific GEFs for Rac and they contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212581  Cd Length: 400  Bit Score: 146.24  E-value: 3.01e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1425 DLFIHFIQK--------KDFVQAALSLELLAGTYAWDsndtlEAISFPPLPEQSSF------ERKEYLLKESARNFSRGQ 1490
Cdd:cd11708    1 DIYIRYLYKlrdlhldcENYTEAAYTLLLHAELLQWS-----EKPCVPHLLQRDSYyvytqqELKERLYQEIISFFDKGK 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1491 KPEKALAVYKDLIKAYDEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHIT 1570
Cdd:cd11708   76 MWEKAIELSKELADMYENQVFDYEGLGNLLKKQAQFYENIMKAMRPQPEYFAVGYYGQGFPSFLRNKIFIYRGKEYERLE 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1571 SMHDRLLRSY-HGSNIVHSQEEVDMLLMNPpmGKYIHVASVEPCLSISDNYnssdKKSSINNKVRMYIENRDLRTFSNSR 1649
Cdd:cd11708  156 DFSLKLLTQFpNAEKMTSTSPPGDEIKSST--KQYVQCFTVKPVMNLPSHY----KDKPVPEQILNYYRANEVQQFQYSR 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1650 rlPGAKGVTD-------LWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGL--ENMCNKTLKD 1720
Cdd:cd11708  230 --PFRKGEKDpdnefatMWIERTTFTTAYRFPGILKWFEVKQISTEEISPLENAIETMELTNEKISNLvqQHAWDRSLPV 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1721 HgdvndlftELSTNITGTISAPVNGGISQY-KAFLEPSTSKQfSTDDLGRLTLaFDELVA----VLGRCLTLHAELLpSK 1795
Cdd:cd11708  308 H--------PLSMLLNGIVDPAVMGGFSNYeKAFFTEKYLQE-HPEDQEKIEL-LKQLIAlqmpLLAEGIRIHGEKL-TE 376
                        410       420
                 ....*....|....*....|...
gi 6323454  1796 DLKPSHDLLVRLFEEnFAEEIER 1818
Cdd:cd11708  377 QLKPLHERLVSCFKD-LRAKVEK 398
DHR2_DOCK_A cd11697
Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis proteins; DOCK ...
1435-1819 2.75e-34

Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis proteins; DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate small GTPases by exchanging bound GDP for free GTP. They are divided into four classes (A-D) based on sequence similarity and domain architecture; class A includes Dock1, 2 and 5. Class A DOCKs are specific GEFs for Rac. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. Dock2 plays an important role in lymphocyte migration and activation, T-cell differentiation, neutrophil chemotaxis, and type I interferon induction. Dock5 functions upstream of Rac1 to regulate osteoclast function. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of class A DOCKs, which contains the catalytic GEF activity for Rac and/or Cdc42. Class A DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212570  Cd Length: 400  Bit Score: 137.46  E-value: 2.75e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1435 DFVQAALSLELLAGTYAWdSNDTLeaisfPPLPEQSSF-------ERKEYLLKESARNFSRGQKPEKALAVYKDLIKAYD 1507
Cdd:cd11697   19 NYTEAAYTLQLHAELLKW-SDEPL-----PTLLRSRRYpeaqthrQLKEALYYDIIDYFDKGKMWECAISLCKELAEQYE 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1508 EINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDRLLRSYHGSNIVH 1587
Cdd:cd11697   93 NETFDYLQLSELLKRMATFYDNIMKTLRPEPEYFRVGYYGQGFPSFLRNKVFIYRGKEYERLSDFSARLLNQFPNAELMN 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1588 SQEEVDMLLMNPPmGKYIHVASVEPCLSISDNYNSsdkKSSINNKVRMYIENrDLRTFSNSRRLP-GAKGVTD----LWV 1662
Cdd:cd11697  173 TLTPPGDEIKESP-GQYLQINKVDPVMDERPRFKG---KPVSDQILNYYKVN-EVQRFTFSRPFRrGTKDPDNefanMWL 247
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1663 EEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKiqelyglenmcNKTLKDH-----GDVNDLFTELSTNITG 1737
Cdd:cd11697  248 ERTTLTTAYKLPGILRWFEVVSTSTVEISPLENAIETMEDT-----------NKKIRDLilqhqSDPTLPINPLSMLLNG 316
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1738 TISAPVNGGISQY-KAFLEPSTSKQFSTDD--LGRLTLAFDELVAVLGRCLTLHAELLPsKDLKPSHDLLVRLFEENFAE 1814
Cdd:cd11697  317 IVDAAVMGGIANYeKAFFTEEYLDEHPEDQelIERLKDLIAEQIPLLEAGLKIHKQKAP-ESLRPLHERMEECFAKMKEH 395

                 ....*
gi 6323454  1815 EIERY 1819
Cdd:cd11697  396 VEEKY 400
DHR2_DOCK4 cd11705
Dock Homology Region 2, a GEF domain, of Class B Dedicator of Cytokinesis 4; Dock4 is an ...
1417-1808 2.42e-31

Dock Homology Region 2, a GEF domain, of Class B Dedicator of Cytokinesis 4; Dock4 is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates small GTPases by exchanging bound GDP for free GTP. It plays a role in regulating dendritic growth and branching in hippocampal neurons, where it is highly expressed. It may also regulate spine morphology and synapse formation. Dock4 activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class B includes Dock3 and 4. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock4, which contains the catalytic GEF activity for Rac and/or Cdc42. Class B DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212578  Cd Length: 391  Bit Score: 128.61  E-value: 2.42e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDSNDTLEAISFPplpEQSSFERKEYLLKESARNFSRGQKPEKAL 1496
Cdd:cd11705    1 EMYIRYIHKLYDLHLKAQNFTEAAYTLLLYDELLEWSDRPLREFLSYP---MQTEWQRKEYLHLTIIQNFDRGKCWENGI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1497 AVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDRL 1576
Cdd:cd11705   78 ILCRKLAEQY-ESYYDYRNLSKMRMMEASLYDKIMDQQRLEPEFFRVGFYGKKFPFFLRNKEFVCRGHDYERLEAFQQRM 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1577 LRSY-HGSNIVHSQEEVDMLLMNPpmGKYIHVASVEPclsISDNYNSSDKKSSINNKVRMYIENRDLRtFSNSRrlPGAK 1655
Cdd:cd11705  157 LNEFpHAIAMQHANQPDETIFQAE--AQYLQIYAVTP---IPESQEVLQRDGVPDNIKSFYKVNHIWR-FRYDR--PFHK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1656 GVTD-------LWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENMCNKtlKDHGDVNdlf 1728
Cdd:cd11705  229 GTKDkenefksLWVERTTLTLVQSLPGISRWFEVEKREVVEMSPLENAIEVLENKNQQLRTLISQCQT--RQMQNIN--- 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1729 tELSTNITGTISAPVNGGISQYK-AFL--EPSTSKQFSTDDLGRLTLAFDELVAVLGRCLTLHAELLPsKDLKPSHDLLV 1805
Cdd:cd11705  304 -PLTMCLNGVIDAAVNGGVSRYQeAFFvkEYILNHPEDGDKITRLRELMLEQAQILEFGLAVHEKFVP-QDMRPLHKKLV 381

                 ...
gi 6323454  1806 RLF 1808
Cdd:cd11705  382 DQF 384
DHR2_DOCK3 cd11704
Dock Homology Region 2, a GEF domain, of Class B Dedicator of Cytokinesis 3; Dock3, also ...
1417-1809 3.70e-30

Dock Homology Region 2, a GEF domain, of Class B Dedicator of Cytokinesis 3; Dock3, also called modifier of cell adhesion (MOCA), is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates small GTPases by exchanging bound GDP for free GTP. Dock3 is a specific GEF for Rac. It regulates N-cadherin dependent cell-cell adhesion, cell polarity, and neuronal morphology. It promotes axonal growth by stimulating actin polymerization and microtubule assembly. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class B includes Dock3 and 4. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock3, which contains the catalytic GEF activity for Rac and/or Cdc42. Class B DOCKs also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212577  Cd Length: 392  Bit Score: 125.12  E-value: 3.70e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDSNDTLEAISFPplpEQSSFERKEYLLKESARNFSRGQKPEKAL 1496
Cdd:cd11704    1 EMYIRYIHKLCDMHLQAENYTEAAFTLLLYCELLQWEDRPLREFLHYP---SQSEWQRKEGLCRKIIHYFNKGKSWEFGI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1497 AVYKDLIKAYDEInYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHITSMHDRL 1576
Cdd:cd11704   78 PLCRELAFQYESL-YDYQSLSWIRKMEAAYYDNIMEQQRLEPEFFRVGFYGRKFPFFLRNKEYVCRGHDYERLEAFQQRM 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1577 LRSY-HGSNIVHSQEEVDMLLMNPpmGKYIHVASVEPclsISDNYNSSdKKSSINNKVRMYIENRDLRTFSNSRrlPGAK 1655
Cdd:cd11704  157 LSEFpQAIAMQHPNHPDDGILQCD--AQYLQIYAVTP---IPDNMDVL-QMDRVPDRIKSFYRVNNVRKFRYDR--PFHK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1656 GVTD-------LWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENMCNKTlKDHGDVNdlf 1728
Cdd:cd11704  229 GPKDkenefksLWIERTTLTLTHSLPGISRWFEVERRELVEVSPLENAIQVVENKNQELRTLISQYQHK-QLHGNIN--- 304
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1729 tELSTNITGTISAPVNGGISQYK-AFLEPS--TSKQFSTDDLGRLTLAFDELVAVLGRCLTLHAELLpSKDLKPSHDLLV 1805
Cdd:cd11704  305 -LLSMCLNGVIDAAVNGGIARYQeAFFDKDyiSKHPGDAEKITQLKELMQEQVHVLGVGLAVHEKFV-HPEMRPLHKKLI 382

                 ....
gi 6323454  1806 RLFE 1809
Cdd:cd11704  383 DQFQ 386
DHR2_DOCK2 cd11706
Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis 2; Dock2 is a ...
1404-1810 2.25e-29

Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis 2; Dock2 is a hematopoietic cell-specific, class A DOCK and is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates small GTPases by exchanging bound GDP for free GTP. It plays an important role in lymphocyte migration and activation, T-cell differentiation, neutrophil chemotaxis, and type I interferon induction. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class A includes Dock1, 2 and 5. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock2, which contains the catalytic GEF activity for Rac and/or Cdc42. Class A DOCKs, like Dock2, are specific GEFs for Rac and they contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212579  Cd Length: 421  Bit Score: 123.18  E-value: 2.25e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1404 IEMFEYLLEANRPELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWdSNDTLEAISFPPLPEQSSFER--KEYLLKE 1481
Cdd:cd11706    6 VNLLNFYKDINREAMYIRYLYKLRDLHLDCENYTEAAYTLLLHTRLLKW-SDEQCASQVMQTGQQHPQTQRqlKETLYET 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1482 SARNFSRGQKPEKALAVYKDLIKAYDEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVF 1561
Cdd:cd11706   85 IIGYFDKGKMWEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFYESIMKILRPKPDYFAVGYYGQGFPSFLRNKVFIY 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1562 EGLPFEHITSMHDRLLRSYHGSNIVHSQEEVDMLLMNPPmGKYIHVASVEPCLSISDNYnssdKKSSINNKVRMYIENRD 1641
Cdd:cd11706  165 RGKEYERREDFQMQLMSQFPNAEKLNTTSAPGDDIKNSP-GQYIQCFTVQPVLEEHPRL----KNKPVPDQIINFYKSNY 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1642 LRTFSNSRrlPGAKGVTD-------LWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQELYGLENmc 1714
Cdd:cd11706  240 VQRFHYSR--PVRKGPVDpenefasMWIERTTFVTAYKLPGILRWFEVTHMSQTTISPLENAIETMSTTNEKILMMIN-- 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1715 nktlKDHGDVNDLFTELSTNITGTISAPVNGGISQY-KAFL-EPSTSK-QFSTDDLGRLTLAFDELVAVLGRCLTLHAEL 1791
Cdd:cd11706  316 ----QYQSDESLPINPLSMLLNGIVDPAVMGGFAKYeKAFFtEEYVRDhPEDQDKLTRLKDLIAWQIPLLGAGIKIHGKR 391
                        410
                 ....*....|....*....
gi 6323454  1792 LpSKDLKPSHDLLVRLFEE 1810
Cdd:cd11706  392 V-TDDLRPFHERMEECFKQ 409
DHR2_DOCK1 cd11707
Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis 1; Dock1, also ...
1417-1818 5.01e-27

Dock Homology Region 2, a GEF domain, of Class A Dedicator of Cytokinesis 1; Dock1, also called Dock180, is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates small GTPases by exchanging bound GDP for free GTP. Dock1 interacts with the scaffold protein Elmo and the resulting complex functions upstream of Rac in many biological events including phagocytosis of apoptotic cells, cell migration and invasion. In the nervous system, it mediates attractive responses to netrin-1 and thus, plays a role in axon outgrowth and pathfinding. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class A includes Dock1, 2 and 5. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock1, which contains the catalytic GEF activity for Rac and/or Cdc42. Class A DOCKs, like Dock1, are specific GEFs for Rac and they contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus.


Pssm-ID: 212580  Cd Length: 400  Bit Score: 115.90  E-value: 5.01e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1417 ELFHKMIYDLFIHFIQKKDFVQAALSLELLAGTYAWDsndtlEAISFPPLPEQSSFER------KEYLLKESARNFSRGQ 1490
Cdd:cd11707    1 EMYIRYLYKLCDLHKECDNYTEAAYTLLLHAKLLKWS-----EEACAAHLTQRDGYQAttqgqlKDQLYQEIIHYFDKGK 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1491 KPEKALAVYKDLIKAYDEINYDLNGLAFVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSLRNKSFVFEGLPFEHIT 1570
Cdd:cd11707   76 MWEEAIALGKELAEQYENEMFDYEQLSELLKKQAQFYENIVKVIRPKPDYFAVGYYGQGFPTFLRNKMFIYRGKEYERRE 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1571 SMHDRLLRSYHGSNIVHSQEEVDMLLMNPPmGKYIHVASVEPCLSISDNYnssdKKSSINNKVRMYIENRDLRTFSNSRr 1650
Cdd:cd11707  156 DFEARLLTQFPNAEKMKTTSPPGDDIKNSS-GQYIQCFTVKPLLELPPKF----QNKPVSEQIVSFYRVNEVQRFQYSR- 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1651 lPGAKGVTD-------LWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQElygLENMCNKTLKDHgd 1723
Cdd:cd11707  230 -PVRKGEKDpdnefanMWIERTTYVTAYKLPGILRWFEVKSVFMVEISPLENAIETMQLTNEK---INNMVQQHLNDP-- 303
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1724 vNDLFTELSTNITGTISAPVNGGISQY-KAFLEPSTSKQFSTDD--LGRLTLAFDELVAVLGRCLTLHAELLpSKDLKPS 1800
Cdd:cd11707  304 -NLPINPLSMLLNGIVDPAVMGGFANYeKAFFTEKYMQEHPEDHekIEKLKDLIAWQIPFLAEGIRIHGEKV-TEALRPF 381
                        410
                 ....*....|....*...
gi 6323454  1801 HDLLVRLFEEnFAEEIER 1818
Cdd:cd11707  382 HERMEACFRQ-LKEKVEK 398
DHR2_DOCK9 cd11698
Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis 9; Dock9, also ...
1478-1802 1.39e-18

Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis 9; Dock9, also called Zizimin1, is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates the small GTPase Cdc42 by exchanging bound GDP for free GTP. It plays important roles in spine formation and dendritic growth. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock9, which contains the catalytic GEF activity for Cdc42. Class D DOCKs also contain a Pleckstrin homology (PH) domain at the N-terminus.


Pssm-ID: 212571  Cd Length: 415  Bit Score: 90.47  E-value: 1.39e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1478 LLKESARNFSRGQKPEKALAVYKDLIKAYDEiNYDLNGLAFVHDQIAGIYTRLQSI----DRLVPTYFKVSFMGFGFPKS 1553
Cdd:cd11698   83 LLEQCADGLWKAERYELIADIYKLIIPIYEK-RRDFERLAHLYDTLHRAYSKVTEVmhsgKRLLGTYFRVAFFGQGFFED 161
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1554 LRNKSFVFEGLPFEHITSMHDRLLRSYHGSnivHSQEEVDMLL----MNP----PMGKYIHVASVEPCLsisDNYNSSDK 1625
Cdd:cd11698  162 EDGKEYIYKEPKLTPLSEISQRLLKLYSDK---FGSENVKMIQdsgkVNPkdldSKYAYIQVTHVTPYF---DEKELQER 235
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1626 KSSI---NNKVRMYIENrdlrTFSNSRRLPGakGVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQV 1702
Cdd:cd11698  236 KTDFersHNIRRFMFEM----PFTQSGKRQG--GVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSK 309
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1703 KIQElygLENMCNKTLKDhgdvndlFTELSTNITGTISAPVNGGISQY-KAFLEPSTSKQFSTDDLGRLTLAFDELVAVL 1781
Cdd:cd11698  310 KVAE---LRQLCSSAEVD-------MIKLQLKLQGSVSVQVNAGPLAYaRAFLDDTNTKRYPDNKVKLLKEVFRQFVEAC 379
                        330       340
                 ....*....|....*....|.
gi 6323454  1782 GRCLTLHAELLpSKDLKPSHD 1802
Cdd:cd11698  380 GQALAVNERLI-KEDQLEYQE 399
DHR2_DOCK_D cd11694
Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis proteins; DOCK ...
1474-1814 7.15e-15

Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis proteins; DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate small GTPases by exchanging bound GDP for free GTP. They are divided into four classes (A-D) based on sequence similarity and domain architecture; class D, also called the Zizimin subfamily, includes Dock9, 10 and 11. Class D Docks are specific GEFs for Cdc42. Dock9 plays important roles in spine formation and dendritic growth. Dock10 and Dock11 are preferentially expressed in lymphocytes. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of class D DOCKs, which contains the catalytic GEF activity for Cdc42. Class D DOCKs also contain a Pleckstrin homology (PH) domain at the N-terminus.


Pssm-ID: 212567  Cd Length: 376  Bit Score: 78.54  E-value: 7.15e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1474 RKEYLLKESARNFSRGQKPEK---ALAVYKDLIKAYDEiNYDLNGLAFVHDQIAGIYTR----LQSIDRLVPTYFKVSFM 1546
Cdd:cd11694   40 RKDLLLELLEACVEGLWKAERyelLGELYKLIIPIYEK-RRDFEQLADCYRTLHRAYEKvvevMESGKRLLGTYYRVAFY 118
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1547 GFGFPKSLRNKSFVFEGLPFEHITSMHDRLLRSY---HGSN---IVHSQEEVDMLLMNPPMGkYIHVASVEPCLSisdny 1620
Cdd:cd11694  119 GQAFFEEEDGKEYIYKEPKVTSLSEISERLLKLYgdkFGSEnvkLIQDSGKVNPKDLDPKYA-YIQVTHVTPYFD----- 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1621 nssdkKSSINNKVRMYIENRDLRTF------SNSRRLPGAkgVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLE 1694
Cdd:cd11694  193 -----EKELEDRKTEFERNHNIRRFvfetpfTLSGKARGA--VEEQWKRRTILTTSHSFPYVKKRIPVVQREIIELSPIE 265
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1695 NAIRSLQVKIQELYGLENMCNKTLKdhgdvndlftELSTNITGTISAPVNGGISQY-KAFLEPSTSKQFSTDDLGRLTLA 1773
Cdd:cd11694  266 VAIDEMQSKVKELEELISTEPVDMK----------KLQLRLQGSVSVQVNAGPLAYaRAFLEPTTVKNYPDDQVEDLKDV 335
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 6323454  1774 FDELVAVLGRCLTLHAELLPSKDLKPSHDLlvrlfEENFAE 1814
Cdd:cd11694  336 FRDFIKACGQALELNERLIKEDQREYHEVL-----KENYRK 371
DHR2_DOCK11 cd11700
Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis 11; Dock11, also ...
1478-1792 7.29e-14

Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis 11; Dock11, also called Zizimin2 or activated Cdc42-associated GEF (ACG), is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates the small GTPase Cdc42 by exchanging bound GDP for free GTP. Dock11 is predominantly expressed in lymphocytes and is found in high levels in germinal center B lymphocytes after T cell dependent antigen immunization. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock11, which contains the catalytic GEF activity for Cdc42. Class D DOCKs also contain a Pleckstrin homology (PH) domain at the N-terminus.


Pssm-ID: 212573  Cd Length: 413  Bit Score: 75.80  E-value: 7.29e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1478 LLKESARNFSRGQKPEKALAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTR----LQSIDRLVPTYFKVSFMGFGFPKS 1553
Cdd:cd11700   84 LLEQCVDGLWKAERYELISEISKLIIPIY-EKRREFEKLTQLYRTLHGAYAKilevMHTGKRLLGTFFRVAFYGQGFFEE 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1554 LRNKSFVFEGLPFEHITSMHDRLLRSY---HGS---NIVHSQEEVDMLLMNPPMGkYIHVASVEPCLsisDNYNSSDKKS 1627
Cdd:cd11700  163 EDGKEYIYKEPKLTGLSEISHRLLKLYgekFGSenvKIIQDSNKVNQKDLDPKYA-HIQVTYVKPYF---DDKEMAERKT 238
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1628 SI--NNKVRMYIenrdlrtFSNSRRLPGAK--GVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVK 1703
Cdd:cd11700  239 EFerNHNIQRFV-------FETPYTLSGKKqgGVEEQCKRRTILTTANSFPYVKKRIPVNGEKQTNLKPIDVATDEIKDK 311
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1704 IQElygLENMCNKtlkdhGDVNdlFTELSTNITGTISAPVNGGISQY-KAFLEPSTSKQFSTDDLGRLTLAFDELVAVLG 1782
Cdd:cd11700  312 TAE---LQKLCSN-----QDVD--MIQLQLKLQGCVSVQVNAGPLAYaRAFLDDSQASKYPNKKVKELKEMFRKFIQACS 381
                        330
                 ....*....|
gi 6323454  1783 RCLTLHAELL 1792
Cdd:cd11700  382 IALELNERLI 391
DHR2_DOCK10 cd11699
Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis 10; Dock10, also ...
1476-1798 6.67e-13

Dock Homology Region 2, a GEF domain, of Class D Dedicator of Cytokinesis 10; Dock10, also called Zizimin3, is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates the small GTPase Cdc42 by exchanging bound GDP for free GTP. Dock10 is preferentially expressed in lymphocytes and may play a role in interleukin-4 induced activation of B cells. It may also play a role in the invasion of tumor cells. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock10, which contains the catalytic GEF activity for Cdc42. Class D DOCKs also contain a Pleckstrin homology (PH) domain at the N-terminus.


Pssm-ID: 212572  Cd Length: 446  Bit Score: 73.16  E-value: 6.67e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1476 EYLLK-ESARNFSRGQKPEKALAVYKDLIKAYDEINYDlnglafVHDQIAGIYTRLQSIDRLVPTYFKVSFMGFGFPKSL 1554
Cdd:cd11699  123 DYLWKsERYELIADVNKPVIAVFEKQRDFKRLSELYYD------IHRSYLKVAEVVNSEKRLFGRYYRVAFYGQGFFEEE 196
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1555 RNKSFVFEGLPFEHITSMHDRLLRSY------HGSNIVHSQEEVDMLLMNPPMGkYIHVASVEPCLsisDNYNSSDKKSS 1628
Cdd:cd11699  197 EGKEYIYKEPKLTGLSEISQRLLKLYadkfgaDNVKIIQDSNKVNPKELDPKFA-YIQVTYVTPYF---DEKEQEDRKTD 272
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1629 INNKvrmyiENRDLRTFSNSRRLPGAK--GVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKIQE 1706
Cdd:cd11699  273 FEMH-----HNINRFVFETPFTLSGKKhgGVEEQCKRRTILTTSHSFPYVKKRIQVVSQTSTELNPIEVAIDEMSKKVSE 347
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1707 LYGLENMcnktlkdhGDVNdlFTELSTNITGTISAPVNGGISQY-KAFLEPSTSKQFSTDDLGRLTLAFDELVAVLGRCL 1785
Cdd:cd11699  348 LNQLCTM--------EEVD--MIRLQLKLQGSVSVKVNAGPMAYaRAFLEETNAKKYPDNQVKLLKEIFRQFAEACGQAL 417
                        330
                 ....*....|...
gi 6323454  1786 TLHAELLPSKDLK 1798
Cdd:cd11699  418 DVNERLIKEDQLE 430
DHR2_DOCK6 cd11702
Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6; Dock6, also ...
1478-1707 3.15e-12

Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 6; Dock6, also called Zizimin-related 1 (Zir1), is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates the small GTPases Rac and Cdc42 by exchanging bound GDP for free GTP. It is widely expressed and shows highest expression in the dorsal root ganglion and the brain. It regulates neurite outgrowth. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class C includes Dock6, 7 and 8. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock6, which contains the catalytic GEF activity for Rac and/or Cdc42.


Pssm-ID: 212575  Cd Length: 423  Bit Score: 70.81  E-value: 3.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1478 LLKESARNFSRGQKPEKALAVYKDLIKAYdEINYDLNGLAFVH----DQIAGIYTRLQSIDRLVPTYFKVSFMGFGFpKS 1553
Cdd:cd11702   95 LLEQAAASFNMGGLYEAVNEVYKILIPIH-EANRDYKKLAVVHgklqEAFNKITNQSSGWERMFGTYFRVGFYGCKF-GD 172
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1554 LRNKSFVFEGLPFEHITSMHDRLLRSYHGS------NIVHSQEEVDMLLMNPPMGkYIHVASVEPCLsisDNYNSSDKks 1627
Cdd:cd11702  173 LDEQEFVYKEPSITKLAEISHRLEEFYTERfgdevvEIIKDSNPVDKSKLDPNKA-YIQITYVEPFF---DTYELKDR-- 246
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1628 sinnkVRMYIENRDLRTFSNSRRL-PGAKGVTDLWvEEYTYHTMNT----FPTLMNRSEIVKVTKSKLSPLENAIRSLQV 1702
Cdd:cd11702  247 -----VTYFDKNYNLRTFLFCTPFtLDGRAHGELH-EQYKRKTILTtshaFPYIKTRINVLHREEIVLIPVEVAIEDMQK 320

                 ....*
gi 6323454  1703 KIQEL 1707
Cdd:cd11702  321 KTQEL 325
DHR2_DOCK_C cd11695
Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis proteins; DOCK ...
1478-1812 3.85e-12

Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis proteins; DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. As GEFs, they activate small GTPases by exchanging bound GDP for free GTP. They are divided into four classes (A-D) based on sequence similarity and domain architecture; class C, also called the Zizimin-related (Zir) subfamily, includes Dock6, 7 and 8. Class C DOCKs have been shown to have GEF activity for both Rac and Cdc42. Dock6 regulates neurite outgrowth. Dock7 plays a critical roles in the early stages of axon formation, neuronal polarity, and myelination. Dock8 regulates T and B cell numbers and functions, and plays essential roles in humoral immune responses and the proper formation of B cell immunological synapses. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Class C Docks, which contains the catalytic GEF activity for Rac and Cdc42.


Pssm-ID: 212568  Cd Length: 368  Bit Score: 70.02  E-value: 3.85e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1478 LLKESARNFSRGQKPEKALAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSID---RLVPTYFKVSFMGFGFpKSL 1554
Cdd:cd11695   40 LLEQAAESFSKAGMYEAVNEVYKLLIPIL-EANRDYKKLAEIHGKLQDAFTKIEKQQggkRMFGTYFRVGFYGSKF-GDL 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1555 RNKSFVFEGLPFEHITSMHDRLLRSY---HGSN---IVHSQEEVDMLLMNPPMGkYIHVASVEPCLsisDNYNSSDKKSs 1628
Cdd:cd11695  118 DGKEFIYKEPAITKLPEISHRLETFYgerFGEErveVIKDSNPVDTSKLDPDKA-YIQITYVEPYF---DEYELKERTT- 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1629 innkvrmYIE-NRDLRTFSNSrrLP-----GAKG-VTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQ 1701
Cdd:cd11695  193 -------YFErNYNLRRFMYA--TPftpdgKAHGeLAEQYKRKTILTTENSFPYVKTRLQVVNREEIVLTPIEVAIEDVQ 263
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1702 VKIQELYglenmcNKTLKDHGDVNdlftELSTNITGTISAPVNGG-ISQYKAFLEPSTSKQFSTDDL-GRLTLAFDELVA 1779
Cdd:cd11695  264 KKTRELA------AATTQEPPDPK----MLQMVLQGSIGTTVNQGpLEVANVFLSDIPLDPKELDRHqNKLRLCFKEFSK 333
                        330       340       350
                 ....*....|....*....|....*....|...
gi 6323454  1780 VLGRCLTLHAELLPSKDLKPSHDLlvrlfEENF 1812
Cdd:cd11695  334 KCYDALEKNKELIGPDQKEYQKEL-----ERNY 361
DHR2_DOCK8 cd11701
Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 8; Dock8, also ...
1478-1792 8.71e-11

Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 8; Dock8, also called Zizimin-related 3 (Zir3), is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates the small GTPases Rac1 and Cdc42 by exchanging bound GDP for free GTP. Dock8 is highly expressed in the immune system and it regulates T and B cell numbers and functions. It plays essential roles in humoral immune responses and the proper formation of B cell immunological synapses. Dock8 deficiency is a primary immune deficiency that results in extreme susceptibility to cutaneous viral infections, elevated IgE levels, and eosinophilia. It was originally described as an autosomal recessive form of hyper IgE syndrome (AR-HIES). DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class C includes Dock6, 7 and 8. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock8, which contains the catalytic GEF activity for Rac and/or Cdc42.


Pssm-ID: 212574  Cd Length: 422  Bit Score: 66.21  E-value: 8.71e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1478 LLKESARNFSRGQKPEKALAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRLQSID--RLVPTYFKVSFMGFGFpKSLR 1555
Cdd:cd11701   96 LLEQAAELFSTGGLYETVNEVYKIVIPIL-EAHRDFRKLASTHDKLQKAFDNIINKGhkRMFGTYFRVGFYGSKF-GDLD 173
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1556 NKSFVFEGLPFEHITSMHDRLlRSYHGSniVHSQEEVDMLLMNPPMGK--------YIHVASVEPCLsisDNYNSSDKks 1627
Cdd:cd11701  174 EQEFIYKEPAITKLPEISHRL-EGFYGQ--CFGDDVVEVIKDSTPVDKskldpnkaYIQITFVEPYF---DDYEMKDR-- 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1628 sinnkVRMYIENRDLR------TFSNSRRLPGAkgVTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQ 1701
Cdd:cd11701  246 -----VTYFEKNFNLRrfmyttPFTLDGRPRGE--LSEQYKRKTILTTMHAFPYIKTRINVIQKEEFDLTPIEVAIEDMQ 318
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1702 VKIQELyglenmCNKTLKDHGDVndlfTELSTNITGTISAPVNGG-ISQYKAFLE--PSTSKQFSTDDlgRLTLAFDELV 1778
Cdd:cd11701  319 KKTREL------AEATHQEPPDA----KMLQMVLQGSVGATVNQGpLEVAQVFLAeiPADPKLYRHHN--KLRLCFKEFI 386
                        330
                 ....*....|....
gi 6323454  1779 AVLGRCLTLHAELL 1792
Cdd:cd11701  387 MRCGEAVEKNKRLI 400
DHR2_DOCK7 cd11703
Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 7; Dock7, also ...
1478-1707 1.31e-09

Dock Homology Region 2, a GEF domain, of Class C Dedicator of Cytokinesis 7; Dock7, also called Zizimin-related 2 (Zir2), is an atypical guanine nucleotide exchange factor (GEF) that lacks the conventional Dbl homology (DH) domain. As a GEF, it activates the small GTPases Rac1 and Cdc42 by exchanging bound GDP for free GTP. It plays a critical role in the initial specification of axon formation in hippocampal neurons. It affects neuronal polarity by regulating microtubule dynamics. Dock7 also plays a role in controlling myelination by Schwann cells. It may also play important roles in the function and distribution of dermal and follicular melanocytes. DOCK proteins are divided into four classes (A-D) based on sequence similarity and domain architecture; class C includes Dock6, 7 and 8. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate. This alignment model represents the DHR-2 domain of Dock7, which contains the catalytic GEF activity for Rac and/or Cdc42.


Pssm-ID: 212576  Cd Length: 473  Bit Score: 62.79  E-value: 1.31e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1478 LLKESARNFSRGQKPEKALAVYKDLIKAYdEINYDLNGLAFVHDQIAGIYTRL--QSIDRLVPTYFKVSFMGFGFpKSLR 1555
Cdd:cd11703  134 LLEQAAASFSMAGMYEAVNEVYKVLIPIH-EANRDAKKLATIHGKLQEAFSKIvhQDGKRMFGTYFRVGFYGTKF-GDLD 211
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1556 NKSFVFEGLPFEHITSMHDRLlRSYHGSNIVHSQEEVdMLLMNP-------PMGKYIHVASVEPCLsisDNYNSSDKkss 1628
Cdd:cd11703  212 EQEFVYKEPAITKLAEISHRL-EGFYGERFGEDVVEV-IKDSNPvdkckldPNKAFIQITYVEPYF---DTYEMKDR--- 283
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323454  1629 innkVRMYIENRDLRTF--SNSRRLPG-AKG-VTDLWVEEYTYHTMNTFPTLMNRSEIVKVTKSKLSPLENAIRSLQVKI 1704
Cdd:cd11703  284 ----ITYFDKNYNLRRFmyCTPFTLDGrAHGeLHEQFKRKTILTTSHAFPYIKTRINVIHKEEIILTPIEVAIEDMQKKT 359

                 ...
gi 6323454  1705 QEL 1707
Cdd:cd11703  360 QEL 362
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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