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Conserved domains on  [gi|6323671|ref|NP_013742|]
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Far8p [Saccharomyces cerevisiae S288C]

Protein Classification

Striatin domain-containing protein( domain architecture ID 10548817)

Striatin domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Striatin pfam08232
Striatin family; Striatin is an intracellular protein which has a caveolin-binding motif, a ...
 14-101 8.21e-24

Striatin family; Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (pfam00400) repeat domain. It acts as a scaffold protein and is involved in signalling pathways.


:

Pssm-ID: 462401  Cd Length: 85  Bit Score: 95.26  E-value: 8.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323671     14 LPGVMHYLQTEFTKNERDRITWELERSEMKARIAELEGENRDLKhQLNQIQSKAVS---PEGEKEEKhvpdsLLQSKLAV 90
Cdd:pfam08232   1 LPGVLHFLQTEWHRHERDRNAWEIERAEMKARIAKLEGERRGQE-NLKKDLKRRIKmleYALKQESK-----RKKSRQYL 74

                          90
                  ....*....|.
gi 6323671     91 QENVKEIIYLL 101
Cdd:pfam08232  75 KKCLQEIGYLD 85
 
Name Accession Description Interval E-value
Striatin pfam08232
Striatin family; Striatin is an intracellular protein which has a caveolin-binding motif, a ...
 14-101 8.21e-24

Striatin family; Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (pfam00400) repeat domain. It acts as a scaffold protein and is involved in signalling pathways.


Pssm-ID: 462401  Cd Length: 85  Bit Score: 95.26  E-value: 8.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323671     14 LPGVMHYLQTEFTKNERDRITWELERSEMKARIAELEGENRDLKhQLNQIQSKAVS---PEGEKEEKhvpdsLLQSKLAV 90
Cdd:pfam08232   1 LPGVLHFLQTEWHRHERDRNAWEIERAEMKARIAKLEGERRGQE-NLKKDLKRRIKmleYALKQESK-----RKKSRQYL 74

                          90
                  ....*....|.
gi 6323671     91 QENVKEIIYLL 101
Cdd:pfam08232  75 KKCLQEIGYLD 85
 
Name Accession Description Interval E-value
Striatin pfam08232
Striatin family; Striatin is an intracellular protein which has a caveolin-binding motif, a ...
 14-101 8.21e-24

Striatin family; Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (pfam00400) repeat domain. It acts as a scaffold protein and is involved in signalling pathways.


Pssm-ID: 462401  Cd Length: 85  Bit Score: 95.26  E-value: 8.21e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323671     14 LPGVMHYLQTEFTKNERDRITWELERSEMKARIAELEGENRDLKhQLNQIQSKAVS---PEGEKEEKhvpdsLLQSKLAV 90
Cdd:pfam08232   1 LPGVLHFLQTEWHRHERDRNAWEIERAEMKARIAKLEGERRGQE-NLKKDLKRRIKmleYALKQESK-----RKKSRQYL 74

                          90
                  ....*....|.
gi 6323671     91 QENVKEIIYLL 101
Cdd:pfam08232  75 KKCLQEIGYLD 85
Mto2_bdg pfam12808
Micro-tubular organizer Mto1 C-term Mto2-binding region; The C-terminal region of the ...
 27-67 1.97e-03

Micro-tubular organizer Mto1 C-term Mto2-binding region; The C-terminal region of the micro-tubular organizer protein 1 (mto1) is the binding domain for attachment to Mto2p.The full-length Mto1 protein is required for microtubule nucleation from non-spindle pole body MTOCs in fission yeast. The interaction of Mto2p with this region of Mto1 is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis.


Pssm-ID: 315477  Cd Length: 52  Bit Score: 36.29  E-value: 1.97e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 6323671     27 KNERDRITweLERSEMKARIAELEGENRDLKHQLNQIQSKA 67
Cdd:pfam12808  14 KAEREARL--LDRSGARERLEELNGENRLLKAELNLLRSHS 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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