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Conserved domains on  [gi|6323874|ref|NP_013945|]
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transport protein particle complex II subunit TRS130 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TRAPPC10 super family cl13959
Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP ...
 1003-1101 8.98e-05

Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1.


The actual alignment was detected with superfamily member pfam12584:

Pssm-ID: 403698  Cd Length: 147  Bit Score: 43.89  E-value: 8.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323874    1003 TIATIGNSLSYTVIVENlSGQWGQDVIDDGG-----YIFEIL-SSNEWLIHGQKRCAIKEKRKE---FEVHLIPLKKGYL 1073
Cdd:pfam12584   25 THARVGQPIPAELKITT-TRRWSSPATRESSnpgleLMYEIEaNPDTWLVGGRRRGNFSAKDGSshtFPLTLIPLRAGHL 103

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 6323874    1074 NFPRVEI----------TNINGK-----SCRVDHSNAFESILI 1101
Cdd:pfam12584  104 LLPKVEVkalvpggkdeGDAHPKsrrppPCEVDYSNHGETVLV 146
 
Name Accession Description Interval E-value
TRAPPC10 pfam12584
Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP ...
 1003-1101 8.98e-05

Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1.


Pssm-ID: 403698  Cd Length: 147  Bit Score: 43.89  E-value: 8.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323874    1003 TIATIGNSLSYTVIVENlSGQWGQDVIDDGG-----YIFEIL-SSNEWLIHGQKRCAIKEKRKE---FEVHLIPLKKGYL 1073
Cdd:pfam12584   25 THARVGQPIPAELKITT-TRRWSSPATRESSnpgleLMYEIEaNPDTWLVGGRRRGNFSAKDGSshtFPLTLIPLRAGHL 103

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 6323874    1074 NFPRVEI----------TNINGK-----SCRVDHSNAFESILI 1101
Cdd:pfam12584  104 LLPKVEVkalvpggkdeGDAHPKsrrppPCEVDYSNHGETVLV 146
 
Name Accession Description Interval E-value
TRAPPC10 pfam12584
Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP ...
 1003-1101 8.98e-05

Trafficking protein particle complex subunit 10, TRAPPC10; This domain forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1.


Pssm-ID: 403698  Cd Length: 147  Bit Score: 43.89  E-value: 8.98e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323874    1003 TIATIGNSLSYTVIVENlSGQWGQDVIDDGG-----YIFEIL-SSNEWLIHGQKRCAIKEKRKE---FEVHLIPLKKGYL 1073
Cdd:pfam12584   25 THARVGQPIPAELKITT-TRRWSSPATRESSnpgleLMYEIEaNPDTWLVGGRRRGNFSAKDGSshtFPLTLIPLRAGHL 103

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 6323874    1074 NFPRVEI----------TNINGK-----SCRVDHSNAFESILI 1101
Cdd:pfam12584  104 LLPKVEVkalvpggkdeGDAHPKsrrppPCEVDYSNHGETVLV 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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