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Conserved domains on  [gi|6325124|ref|NP_015192|]
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gluconeogenesis transcription factor RDS2 [Saccharomyces cerevisiae S288C]

Protein Classification

Zn(II)2Cys6 transcription factor domain-containing protein( domain architecture ID 10637797)

Zn(II)2Cys6 transcription factor domain-containing protein belongs to a subclass of zinc finger proteins mainly found in fungi

Gene Ontology:  GO:0008270
PubMed:  9290251

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GAL4 smart00066
GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive ...
 11-53 4.65e-06

GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.


:

Pssm-ID: 214501 [Multi-domain]  Cd Length: 43  Bit Score: 43.50  E-value: 4.65e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 6325124      11 SKAFKTCLFCKRSHVVCDKQRP-CSRCVKRDIahLCREDDIAVP 53
Cdd:smart00066   1 KRVSKACDRCRKRKIKCDGKKPpCSNCIKLGL--ECTYSDSKKR 42
 
Name Accession Description Interval E-value
GAL4 smart00066
GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive ...
 11-53 4.65e-06

GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.


Pssm-ID: 214501 [Multi-domain]  Cd Length: 43  Bit Score: 43.50  E-value: 4.65e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 6325124      11 SKAFKTCLFCKRSHVVCDKQRP-CSRCVKRDIahLCREDDIAVP 53
Cdd:smart00066   1 KRVSKACDRCRKRKIKCDGKKPpCSNCIKLGL--ECTYSDSKKR 42
GAL4 cd00067
GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like ...
 12-39 4.57e-05

GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif; Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations


Pssm-ID: 238023 [Multi-domain]  Cd Length: 36  Bit Score: 40.34  E-value: 4.57e-05
                        10        20
                ....*....|....*....|....*....
gi 6325124   12 KAFKTCLFCKRSHVVCDKQ-RPCSRCVKR 39
Cdd:cd00067   1 RVRRACDRCRRRKIKCDGEkPPCSNCIKL 29
Zn_clus pfam00172
Fungal Zn(2)-Cys(6) binuclear cluster domain;
17-39 6.24e-04

Fungal Zn(2)-Cys(6) binuclear cluster domain;


Pssm-ID: 395120 [Multi-domain]  Cd Length: 39  Bit Score: 37.28  E-value: 6.24e-04
                          10        20
                  ....*....|....*....|....
gi 6325124     17 CLFCKRSHVVCDKQRP-CSRCVKR 39
Cdd:pfam00172   3 CDNCRKRKVKCDGKKPaCSRCIKN 26
 
Name Accession Description Interval E-value
GAL4 smart00066
GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive ...
 11-53 4.65e-06

GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain; Gal4 is a positive regulator for the gene expression of the galactose- induced genes of S. cerevisiae. Is present only in fungi.


Pssm-ID: 214501 [Multi-domain]  Cd Length: 43  Bit Score: 43.50  E-value: 4.65e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 6325124      11 SKAFKTCLFCKRSHVVCDKQRP-CSRCVKRDIahLCREDDIAVP 53
Cdd:smart00066   1 KRVSKACDRCRKRKIKCDGKKPpCSNCIKLGL--ECTYSDSKKR 42
GAL4 cd00067
GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like ...
 12-39 4.57e-05

GAL4-like Zn2Cys6 binuclear cluster DNA-binding domain; found in transcription regulators like GAL4. Domain consists of two helices organized around a Zn(2)Cys(6 )motif; Binds to sequences containing 2 DNA half sites comprised of 3-5 C/G combinations


Pssm-ID: 238023 [Multi-domain]  Cd Length: 36  Bit Score: 40.34  E-value: 4.57e-05
                        10        20
                ....*....|....*....|....*....
gi 6325124   12 KAFKTCLFCKRSHVVCDKQ-RPCSRCVKR 39
Cdd:cd00067   1 RVRRACDRCRRRKIKCDGEkPPCSNCIKL 29
Zn_clus pfam00172
Fungal Zn(2)-Cys(6) binuclear cluster domain;
17-39 6.24e-04

Fungal Zn(2)-Cys(6) binuclear cluster domain;


Pssm-ID: 395120 [Multi-domain]  Cd Length: 39  Bit Score: 37.28  E-value: 6.24e-04
                          10        20
                  ....*....|....*....|....
gi 6325124     17 CLFCKRSHVVCDKQRP-CSRCVKR 39
Cdd:pfam00172   3 CDNCRKRKVKCDGKKPaCSRCIKN 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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