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Conserved domains on  [gi|6325402|ref|NP_015470|]
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ribosome biosynthesis protein NOC4 [Saccharomyces cerevisiae S288C]

Protein Classification

CBF/MAK21 family protein( domain architecture ID 10511266)

CBF/MAK21 family protein similar to Saccharomyces cerevisiae nucleolar complex protein 4 (NOC4), which is involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly, as well as in the nuclear export of 40S pre-ribosomal subunit to the cytoplasm

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBF pfam03914
CBF/Mak21 family;
317-480 6.05e-53

CBF/Mak21 family;


:

Pssm-ID: 461090 [Multi-domain]  Cd Length: 151  Bit Score: 177.01  E-value: 6.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402    317 ILALNGLFELMKRFNleyPNFYMKLYQ-IINPDLMHVKYRARFFRLMDvflssTHLSAHLVASFIKKLARLTLESPPSAI 395
Cdd:pfam03914   2 LQALNLLFQLMSSHN---PRFYRALYElLLDPRLLHSSKQALFLNLLD-----KALPAARVAAFVKRLLQLALHAPPSFI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402    396 VTVIPFIYNLIRKH-PNCMIMLHNPAfisnpfqtPDQVANLKTLKENYVDPFDVHESDPELTHALDSSLWELASLMEHYH 474
Cdd:pfam03914  74 CGILYLISNLLKRHpPSLRSLLHREE--------EEEEEEKEKKSEEGSDPYDPRKRDPEFSNADESSLWELELLLKHYH 145


                  ....*.
gi 6325402    475 PNVATL 480
Cdd:pfam03914 146 PSVSLF 151
 
Name Accession Description Interval E-value
CBF pfam03914
CBF/Mak21 family;
317-480 6.05e-53

CBF/Mak21 family;


Pssm-ID: 461090 [Multi-domain]  Cd Length: 151  Bit Score: 177.01  E-value: 6.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402    317 ILALNGLFELMKRFNleyPNFYMKLYQ-IINPDLMHVKYRARFFRLMDvflssTHLSAHLVASFIKKLARLTLESPPSAI 395
Cdd:pfam03914   2 LQALNLLFQLMSSHN---PRFYRALYElLLDPRLLHSSKQALFLNLLD-----KALPAARVAAFVKRLLQLALHAPPSFI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402    396 VTVIPFIYNLIRKH-PNCMIMLHNPAfisnpfqtPDQVANLKTLKENYVDPFDVHESDPELTHALDSSLWELASLMEHYH 474
Cdd:pfam03914  74 CGILYLISNLLKRHpPSLRSLLHREE--------EEEEEEKEKKSEEGSDPYDPRKRDPEFSNADESSLWELELLLKHYH 145


                  ....*.
gi 6325402    475 PNVATL 480
Cdd:pfam03914 146 PSVSLF 151
COG5593 COG5593
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ...
 426-500 6.74e-04

Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227880 [Multi-domain]  Cd Length: 821  Bit Score: 42.72  E-value: 6.74e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402  426 FQTPDQVANLKTLKENYVDPFDVHESDPELTHALDSSLWELASLMEHYHPNVATLA-------KIFAQPFKKLsYNMEDF 498
Cdd:COG5593 517 YEYESDAEEEQGDKDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYAnayvtgeEQIAKPDLGL-FTLSHF 595


                ..
gi 6325402  499 LD 500
Cdd:COG5593 596 LD 597
 
Name Accession Description Interval E-value
CBF pfam03914
CBF/Mak21 family;
317-480 6.05e-53

CBF/Mak21 family;


Pssm-ID: 461090 [Multi-domain]  Cd Length: 151  Bit Score: 177.01  E-value: 6.05e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402    317 ILALNGLFELMKRFNleyPNFYMKLYQ-IINPDLMHVKYRARFFRLMDvflssTHLSAHLVASFIKKLARLTLESPPSAI 395
Cdd:pfam03914   2 LQALNLLFQLMSSHN---PRFYRALYElLLDPRLLHSSKQALFLNLLD-----KALPAARVAAFVKRLLQLALHAPPSFI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402    396 VTVIPFIYNLIRKH-PNCMIMLHNPAfisnpfqtPDQVANLKTLKENYVDPFDVHESDPELTHALDSSLWELASLMEHYH 474
Cdd:pfam03914  74 CGILYLISNLLKRHpPSLRSLLHREE--------EEEEEEKEKKSEEGSDPYDPRKRDPEFSNADESSLWELELLLKHYH 145


                  ....*.
gi 6325402    475 PNVATL 480
Cdd:pfam03914 146 PSVSLF 151
COG5593 COG5593
Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal ...
 426-500 6.74e-04

Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227880 [Multi-domain]  Cd Length: 821  Bit Score: 42.72  E-value: 6.74e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325402  426 FQTPDQVANLKTLKENYVDPFDVHESDPELTHALDSSLWELASLMEHYHPNVATLA-------KIFAQPFKKLsYNMEDF 498
Cdd:COG5593 517 YEYESDAEEEQGDKDIKRKEYDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYAnayvtgeEQIAKPDLGL-FTLSHF 595


                ..
gi 6325402  499 LD 500
Cdd:COG5593 596 LD 597
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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