NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|154200012|ref|NP_015479|]
View 

May24p [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Tmemb_170 super family cl10884
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 36-134 1.67e-13

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


The actual alignment was detected with superfamily member pfam10190:

Pssm-ID: 462988  Cd Length: 106  Bit Score: 62.25  E-value: 1.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154200012   36 LYYISDIWKFSLYWTLIFNGAFYVTAGVYASLTHRKKAGSVWIFVMYVLYGGVQGLTTGTVMGFLIGAIYRSGLFSMSTW 115
Cdd:pfam10190   2 LYDFGEMWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGRFIPILILLMGILIPLTGGAITSAAIAFVYRASSFSMSPL 81

                          90
                  ....*....|....*....
gi 154200012  116 VPLCCAVVQILFDVVLSYS 134
Cdd:pfam10190  82 YAMIWGVGQTILLVIISFT 100
 
Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 36-134 1.67e-13

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


Pssm-ID: 462988  Cd Length: 106  Bit Score: 62.25  E-value: 1.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154200012   36 LYYISDIWKFSLYWTLIFNGAFYVTAGVYASLTHRKKAGSVWIFVMYVLYGGVQGLTTGTVMGFLIGAIYRSGLFSMSTW 115
Cdd:pfam10190   2 LYDFGEMWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGRFIPILILLMGILIPLTGGAITSAAIAFVYRASSFSMSPL 81

                          90
                  ....*....|....*....
gi 154200012  116 VPLCCAVVQILFDVVLSYS 134
Cdd:pfam10190  82 YAMIWGVGQTILLVIISFT 100
 
Name Accession Description Interval E-value
Tmemb_170 pfam10190
Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins ...
 36-134 1.67e-13

Putative transmembrane protein 170; Tmem170 is a family of putative transmembrane proteins conserved from fungi to nematodes to humans. The protein is only of approximately 130 amino acids in length. The function is unknown.


Pssm-ID: 462988  Cd Length: 106  Bit Score: 62.25  E-value: 1.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 154200012   36 LYYISDIWKFSLYWTLIFNGAFYVTAGVYASLTHRKKAGSVWIFVMYVLYGGVQGLTTGTVMGFLIGAIYRSGLFSMSTW 115
Cdd:pfam10190   2 LYDFGEMWYAIFLWALFSSIFVHLVAALIAFFTLRKHKFGRFIPILILLMGILIPLTGGAITSAAIAFVYRASSFSMSPL 81

                          90
                  ....*....|....*....
gi 154200012  116 VPLCCAVVQILFDVVLSYS 134
Cdd:pfam10190  82 YAMIWGVGQTILLVIISFT 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH