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Conserved domains on  [gi|6325424|ref|NP_015492|]
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mitochondrial 37S ribosomal protein MRP2 [Saccharomyces cerevisiae S288C]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 10446592)

uS14 family ribosomal protein similar to Homo sapiens mitochondrial 28S ribosomal protein S14 and Saccharomyces cerevisiae mitochondrial 37S ribosomal protein MRP2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 61-112 4.67e-21

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


:

Pssm-ID: 459734  Cd Length: 54  Bit Score: 78.99  E-value: 4.67e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 6325424     61 KLNALPNYMRSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKK 112
Cdd:pfam00253   1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKK 52
 
Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 61-112 4.67e-21

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 78.99  E-value: 4.67e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 6325424     61 KLNALPNYMRSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKK 112
Cdd:pfam00253   1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKK 52
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 70-115 9.29e-11

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 53.09  E-value: 9.29e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 6325424   70 RSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKKGIW 115
Cdd:COG0199  15 KPVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
rpsN PRK08061
type Z 30S ribosomal protein S14;
71-115 2.33e-09

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 49.49  E-value: 2.33e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 6325424    71 STQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKKGIW 115
Cdd:PRK08061  17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
 
Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 61-112 4.67e-21

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 78.99  E-value: 4.67e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 6325424     61 KLNALPNYMRSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKK 112
Cdd:pfam00253   1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKK 52
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 70-115 9.29e-11

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 53.09  E-value: 9.29e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 6325424   70 RSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKKGIW 115
Cdd:COG0199  15 KPVRLRNRCELTGRPRGYYRKFGLCRICFRELAHRGEIPGVKKASW 60
rpsN PRK08061
type Z 30S ribosomal protein S14;
71-115 2.33e-09

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 49.49  E-value: 2.33e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 6325424    71 STQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKKGIW 115
Cdd:PRK08061  17 KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
rps14 CHL00074
ribosomal protein S14
 27-115 3.38e-08

ribosomal protein S14


Pssm-ID: 214354  Cd Length: 100  Bit Score: 47.49  E-value: 3.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325424    27 KRQQFKENEILVKSLKfiarnmnlptkLRLEAQLKLNALPNYMRSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGN 106
Cdd:CHL00074  23 KRRSLKKEIKKVSSLS-----------EKWEIHGKLQSLPRNSAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACL 91


                 ....*....
gi 6325424   107 LPGVKKGIW 115
Cdd:CHL00074  92 LPGVTKSSW 100
rpsN PRK06911
30S ribosomal protein S14; Reviewed
 56-115 6.01e-05

30S ribosomal protein S14; Reviewed


Pssm-ID: 180742 [Multi-domain]  Cd Length: 100  Bit Score: 38.89  E-value: 6.01e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325424    56 LEAQLKLNALPNYMRSTQIKNRCVDSGHARFVLSDFRLCRYQFRENALKGNLPGVKKGIW 115
Cdd:PRK06911  41 MESQAKLAKLPVNSNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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