|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
41-334 |
2.40e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.42 E-value: 2.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 41 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 120
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 121 LDEAEDDFKKVLKSNPseqEEKEAESQLVKADEMQRlrsqaldafdgaDYTAAITFLDKILEVCVWDAELRELRAECFIK 200
Cdd:COG2956 92 LDRAEELLEKLLELDP---DDAEALRLLAEIYEQEG------------DWEKAIEVLERLLKLGPENAHAYCELAELYLE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 201 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHkrcfahykqVKKLNKLIESAEELir 280
Cdd:COG2956 157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY---------LPALPRLAELYEKL-- 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 31542563 281 dGRYTDATSKYESVMKTEPSVAEYtvrskERICHCFSKDEKPVEAIRICSEVLQ 334
Cdd:COG2956 226 -GDPEEALELLRKALELDPSDDLL-----LALADLLERKEGLEAALALLERQLR 273
|
|
| PRK14278 |
PRK14278 |
chaperone protein DnaJ; Provisional |
393-478 |
2.31e-20 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237654 [Multi-domain] Cd Length: 378 Bit Score: 92.81 E-value: 2.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLdaeSQQG 472
Cdd:PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPD----VNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPL---ESAG 75
|
....*.
gi 31542563 473 GGGNPF 478
Cdd:PRK14278 76 GGGGGF 81
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
36-281 |
2.57e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.94 E-value: 2.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 115
Cdd:COG2956 41 TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 116 LKQGKLDEAEDDFKKVLKSNPseqeekeaesqlvkaDEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 195
Cdd:COG2956 121 EQEGDWEKAIEVLERLLKLGP---------------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 196 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLiESA 275
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL-EAA 264
|
....*.
gi 31542563 276 EELIRD 281
Cdd:COG2956 265 LALLER 270
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
98-394 |
7.13e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.40 E-value: 7.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 98 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPseqEEKEAESQLVKADEMQrlrsqaldafdgADYTAAITFL 177
Cdd:COG2956 1 LLLPVAAALGWYFKGLNYLLNGQPDKAIDLLEEALELDP---ETVEAHLALGNLYRRR------------GEYDRAIRIH 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 178 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHkr 257
Cdd:COG2956 66 QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 258 cfAHYkqvkklnkLIESAEELIRDGRYTDATSKYESVMKTEPSvaeyTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 337
Cdd:COG2956 144 --AHA--------YCELAELYLEQGDYDEAIEALEKALKLDPD----CARALLLLAELYLEQGDYEEAIAALERALEQDP 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31542563 338 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI---------REGLEKAQRLLKQSQKRD 394
Cdd:COG2956 210 DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLlaladllerKEGLEAALALLERQLRRH 275
|
|
| DnaJ_bact |
TIGR02349 |
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ... |
394-495 |
3.84e-19 |
|
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Pssm-ID: 274090 [Multi-domain] Cd Length: 354 Bit Score: 88.81 E-value: 3.84e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDplDAESQQG 472
Cdd:TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD----KEAEEKFKEINEAYEVLSDPEKRAQYDQfGHA--GFNGGGG 74
|
90 100
....*....|....*....|...
gi 31542563 473 GGGNPFhrswnSWQGFNPFSSGG 495
Cdd:TIGR02349 75 GGGGGF-----NGFDIGFFGDFG 92
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
74-366 |
4.92e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.09 E-value: 4.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 74 YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPseqEEKEAESQLvkade 153
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDP---DRAEALLEL----- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 154 mqrlrsqALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 233
Cdd:COG2956 83 -------AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 234 QLGDHELSLSEVRECLKLDQDHKRcfAHYKQvkklnkliesAEELIRDGRYTDATSKYESVMKTEPSVAEYtvrsKERIC 313
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCAR--ALLLL----------AELYLEQGDYEEAIAALERALEQDPDYLPA----LPRLA 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 31542563 314 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKdRAEAYLIEEMYDEAIQDYEAA 366
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQ 271
|
|
| DnaJ |
pfam00226 |
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ... |
394-459 |
6.06e-19 |
|
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Pssm-ID: 395170 [Multi-domain] Cd Length: 63 Bit Score: 80.59 E-value: 6.06e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:pfam00226 1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDkNPGD----PEAEEKFKEINEAYEVLSDPEKRAIYD 63
|
|
| PRK14291 |
PRK14291 |
chaperone protein DnaJ; Provisional |
391-480 |
2.37e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237661 [Multi-domain] Cd Length: 382 Bit Score: 86.75 E-value: 2.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAES 469
Cdd:PRK14291 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN----PEAEEKFKEINEAYQVLSDPEKRKLYDQfGHAAFSGSG 76
|
90
....*....|.
gi 31542563 470 QQGGGGNPFHR 480
Cdd:PRK14291 77 QQQQGQEGFSD 87
|
|
| PRK14282 |
PRK14282 |
chaperone protein DnaJ; Provisional |
391-474 |
2.68e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184603 [Multi-domain] Cd Length: 369 Bit Score: 86.39 E-value: 2.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD----GEDPLD 466
Cdd:PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPD--RHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRfgyvGEQPPY 79
|
....*...
gi 31542563 467 AESQQGGG 474
Cdd:PRK14282 80 QETESGGG 87
|
|
| PRK14277 |
PRK14277 |
chaperone protein DnaJ; Provisional |
391-501 |
2.36e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184599 [Multi-domain] Cd Length: 386 Bit Score: 83.70 E-value: 2.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAE 468
Cdd:PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDlNPGD----KEAEQKFKEINEAYEILSDPQKRAQYDQfGHAAFDPG 78
|
90 100 110
....*....|....*....|....*....|...
gi 31542563 469 SQQGGGgnpFhrswnSWQGFnpfsSGGPFRFKF 501
Cdd:PRK14277 79 GFGQGG---F-----GQGGF----GGGGFDFDF 99
|
|
| PRK14290 |
PRK14290 |
chaperone protein DnaJ; Provisional |
393-492 |
6.04e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172778 [Multi-domain] Cd Length: 365 Bit Score: 82.29 E-value: 6.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDgedplDAESQQG 472
Cdd:PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPD--LHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ-----TGTVDFG 75
|
90 100
....*....|....*....|
gi 31542563 473 GGGNPFhrswnSWQGFNPFS 492
Cdd:PRK14290 76 AGGSNF-----NWDNFTHFS 90
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
67-255 |
6.86e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.05 E-value: 6.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 67 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPseqeeKEAES 146
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDP-----DDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 147 QLVKADEMQRLRsqaldafdgaDYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 226
Cdd:COG0457 79 LNNLGLALQALG----------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
170 180
....*....|....*....|....*....
gi 31542563 227 KISTLYYQLGDHELSLSEVRECLKLDQDH 255
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAA 177
|
|
| PRK14280 |
PRK14280 |
molecular chaperone DnaJ; |
392-499 |
9.39e-17 |
|
molecular chaperone DnaJ;
Pssm-ID: 237656 [Multi-domain] Cd Length: 376 Bit Score: 81.69 E-value: 9.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD--GEDPldaes 469
Cdd:PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPD----INKEEGADEKFKEISEAYEVLSDDQKRAQYDQfgHAGP----- 73
|
90 100 110
....*....|....*....|....*....|
gi 31542563 470 QQGGGGnpfhrswnswQGFNPFSSGGPFRF 499
Cdd:PRK14280 74 NQGFGG----------GGFGGGDFGGGFGF 93
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
40-252 |
9.69e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 9.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 119
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 120 KLDEAEDDFKKVLKSNPseqeeKEAESQLVKADEMQRLRsqaldafdgaDYTAAITFLDKILEVCVWDAELRELRAECFI 199
Cdd:COG2956 159 DYDEAIEALEKALKLDP-----DCARALLLLAELYLEQG----------DYEEAIAALERALEQDPDYLPALPRLAELYE 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 31542563 200 KEGEPRKAISDLKAASKLKSDNTEAFYkISTLYYQLGDHELSLSEVRECLKLD 252
Cdd:COG2956 224 KLGDPEEALELLRKALELDPSDDLLLA-LADLLERKEGLEAALALLERQLRRH 275
|
|
| PRK10767 |
PRK10767 |
chaperone protein DnaJ; Provisional |
392-492 |
9.71e-17 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 236757 [Multi-domain] Cd Length: 371 Bit Score: 81.73 E-value: 9.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDaesq 470
Cdd:PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG---DKEAEEKFKEIKEAYEVLSDPQKRAAYDQyGHAAFE---- 75
|
90 100
....*....|....*....|..
gi 31542563 471 QGGGGNPFhrswnswQGFNPFS 492
Cdd:PRK10767 76 QGGGGGGF-------GGGGGFG 90
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
36-214 |
1.05e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.67 E-value: 1.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 115
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 116 LKQGKLDEAEDDFKKVLKSNPseqeeKEAESQLVKADEMQRLRsqaldafdgaDYTAAITFLDKILEVCVWDAELRELRA 195
Cdd:COG0457 87 QALGRYEEALEDYDKALELDP-----DDAEALYNLGLALLELG----------RYDEAIEAYERALELDPDDADALYNLG 151
|
170
....*....|....*....
gi 31542563 196 ECFIKEGEPRKAISDLKAA 214
Cdd:COG0457 152 IALEKLGRYEEALELLEKL 170
|
|
| DnaJ |
COG0484 |
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ... |
394-471 |
1.16e-16 |
|
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440252 [Multi-domain] Cd Length: 139 Bit Score: 76.66 E-value: 1.16e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQ 471
Cdd:COG0484 1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPG---DPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLAT 75
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-207 |
1.39e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 82.73 E-value: 1.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 18 LLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 97
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 98 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQeekEAESQLVKADEMQRLRSQALDAFDGA------DYT 171
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNA---EALNNLGNALQDLGRLEEAIAAYRRAleldpdNAD 215
|
170 180 190
....*....|....*....|....*....|....*.
gi 31542563 172 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 207
Cdd:COG3914 216 AHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| DnaJ |
smart00271 |
DnaJ molecular chaperone homology domain; |
393-453 |
3.12e-16 |
|
DnaJ molecular chaperone homology domain;
Pssm-ID: 197617 [Multi-domain] Cd Length: 60 Bit Score: 72.65 E-value: 3.12e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeEKKKAEKKFIDIAAAKEVLSDPE 453
Cdd:smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG--DKEEAEEKFKEINEAYEVLSDPE 59
|
|
| terminal_TopJ |
NF037946 |
terminal organelle assembly protein TopJ; |
390-466 |
2.30e-15 |
|
terminal organelle assembly protein TopJ;
Pssm-ID: 468284 [Multi-domain] Cd Length: 440 Bit Score: 78.32 E-value: 2.30e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD-------DGE 462
Cdd:NF037946 2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDR----NKAPDAAEIFAEINEAYEVLSNPEKRANYDkyghdgvDGE 77
|
....
gi 31542563 463 DPLD 466
Cdd:NF037946 78 GGFG 81
|
|
| PRK14283 |
PRK14283 |
chaperone protein DnaJ; Provisional |
390-471 |
2.68e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184604 [Multi-domain] Cd Length: 378 Bit Score: 77.56 E-value: 2.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAE 468
Cdd:PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD----VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQfGHAGMDGF 77
|
...
gi 31542563 469 SQQ 471
Cdd:PRK14283 78 SQE 80
|
|
| PRK14294 |
PRK14294 |
chaperone protein DnaJ; Provisional |
390-475 |
3.72e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237664 [Multi-domain] Cd Length: 366 Bit Score: 76.73 E-value: 3.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDA 467
Cdd:PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDrNPGD----KEAEELFKEAAEAYEVLSDPKKRGIYDQyGHEGLSG 76
|
....*...
gi 31542563 468 ESQQGGGG 475
Cdd:PRK14294 77 TGFSGFSG 84
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
40-140 |
5.71e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 74.18 E-value: 5.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 119
Cdd:COG4785 76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155
|
90 100
....*....|....*....|.
gi 31542563 120 KLDEAEDDFKKVLKSNPSEQE 140
Cdd:COG4785 156 RYELAIADLEKALELDPNDPE 176
|
|
| PRK14281 |
PRK14281 |
chaperone protein DnaJ; Provisional |
392-478 |
5.90e-15 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237657 [Multi-domain] Cd Length: 397 Bit Score: 76.77 E-value: 5.90e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQ 470
Cdd:PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDkNPDN----KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSA 77
|
....*...
gi 31542563 471 QGGGGNPF 478
Cdd:PRK14281 78 ASGGGPGY 85
|
|
| DnaJ |
cd06257 |
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ... |
394-451 |
8.75e-15 |
|
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Pssm-ID: 99751 [Multi-domain] Cd Length: 55 Bit Score: 68.34 E-value: 8.75e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSD 451
Cdd:cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPD---DPEAEEKFKEINEAYEVLSD 55
|
|
| PRK14301 |
PRK14301 |
chaperone protein DnaJ; Provisional |
392-498 |
1.08e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237668 [Multi-domain] Cd Length: 373 Bit Score: 75.55 E-value: 1.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLdaes 469
Cdd:PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDrNPDN----PEAEQKFKEAAEAYEVLRDAEKRARYDRfGHAGV---- 74
|
90 100 110
....*....|....*....|....*....|....*.
gi 31542563 470 QQGGGGNPFHRSWNSWQGFNP-------FSSGGPFR 498
Cdd:PRK14301 75 NGNGGFGGFSSAEDIFSHFSDifgdlfgFSGGGSRR 110
|
|
| PRK14293 |
PRK14293 |
molecular chaperone DnaJ; |
393-459 |
1.61e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237663 [Multi-domain] Cd Length: 374 Bit Score: 75.03 E-value: 1.61e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPD----VNKEPGAEDRFKEINRAYEVLSDPETRARYD 65
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
35-136 |
1.68e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.61 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 35 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 114
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100
....*....|....*....|..
gi 31542563 115 LLKQGKLDEAEDDFKKVLKSNP 136
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDP 103
|
|
| PRK14298 |
PRK14298 |
chaperone protein DnaJ; Provisional |
390-459 |
2.98e-14 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184612 [Multi-domain] Cd Length: 377 Bit Score: 74.11 E-value: 2.98e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDK----NKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67
|
|
| PRK14289 |
PRK14289 |
molecular chaperone DnaJ; |
390-501 |
3.22e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237660 [Multi-domain] Cd Length: 386 Bit Score: 74.10 E-value: 3.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAES 469
Cdd:PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPD---KNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGA 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 31542563 470 QQGGG---------------GNPFHRSWNSWQGFNPFSSGGPFRFKF 501
Cdd:PRK14289 79 AGGGGfsgegmsmedifsmfGDIFGGHGGGFGGFGGFGGGGSQQRVF 125
|
|
| PRK14295 |
PRK14295 |
molecular chaperone DnaJ; |
392-496 |
4.32e-14 |
|
molecular chaperone DnaJ;
Pssm-ID: 237665 [Multi-domain] Cd Length: 389 Bit Score: 73.73 E-value: 4.32e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDdgedplDAESQ 470
Cdd:PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDaNKGD----AKAEERFKEISEAYDVLSDEKKRKEYD------EARSL 77
|
90 100
....*....|....*....|....*.
gi 31542563 471 QGGGgnpfhrswnswqGFNPFSSGGP 496
Cdd:PRK14295 78 FGNG------------GFRPGPGGGG 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
36-151 |
5.81e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.49 E-value: 5.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 115
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....*.
gi 31542563 116 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 151
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PRK14300 |
PRK14300 |
chaperone protein DnaJ; Provisional |
393-495 |
1.53e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172788 [Multi-domain] Cd Length: 372 Bit Score: 71.97 E-value: 1.53e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAESQQ 471
Cdd:PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDT----TDAKDAEKKFKEINAAYDVLKDEQKRAAYDRfGHDAFQNQQSR 78
|
90 100
....*....|....*....|....*...
gi 31542563 472 GGGGNP--FHRSWNSWQG--FNPFSSGG 495
Cdd:PRK14300 79 GGGGNHggFHPDINDIFGdfFSDFMGGS 106
|
|
| PRK14297 |
PRK14297 |
molecular chaperone DnaJ; |
392-495 |
1.61e-13 |
|
molecular chaperone DnaJ;
Pssm-ID: 184611 [Multi-domain] Cd Length: 380 Bit Score: 72.12 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDD--GEDPLDAES 469
Cdd:PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG---NKEAEEKFKEINEAYQVLSDPQKKAQYDQfgTADFNGAGG 79
|
90 100
....*....|....*....|....*...
gi 31542563 470 QQGGGGNPFHRSWNSWQG--FNPFSSGG 495
Cdd:PRK14297 80 FGSGGFGGFDFSDMGGFGdiFDSFFGGG 107
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
41-427 |
1.71e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 1.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 41 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK 120
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 121 LDEAE----------------------------------DDFKKVLKSNPSE--------------QEEKEAESQL---V 149
Cdd:TIGR02917 243 FEEAEkhadallkkapnsplahylkalvdfqkknyedarETLQDALKSAPEYlpalllagaseyqlGNLEQAYQYLnqiL 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 150 KADEMQRL--RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 227
Cdd:TIGR02917 323 KYAPNSHQarRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 228 ISTLYYQLGDHELSLSEVRECLKLDQDHKRC----FAHYKQVKKLNKLIESAEELIR------------------DGRYT 285
Cdd:TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPELGRAdlllILSYLRSGQFDKALAAAKKLEKkqpdnaslhnllgaiylgKGDLA 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 286 DATSKYESVMKTEPsvAEYTVRSKERICHcfSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 365
Cdd:TIGR02917 483 KAREAFEKALSIEP--DFFPAAANLARID--IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31542563 366 AQEHNENDQQIREGLEKAQRLLKQSQK------------RD---YYKILG--VKRNAKKQEIIKAYRKLALQwHPDNFQ 427
Cdd:TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKalailneaadaaPDspeAWLMLGraQLAAGDLNKAVSSFKKLLAL-QPDSAL 636
|
|
| PRK14276 |
PRK14276 |
chaperone protein DnaJ; Provisional |
392-497 |
1.88e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237653 [Multi-domain] Cd Length: 380 Bit Score: 71.66 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GedPLDAESQ 470
Cdd:PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPD----INKEPGAEEKYKEVQEAYETLSDPQKRAAYDQyG--AAGANGG 76
|
90 100
....*....|....*....|....*..
gi 31542563 471 QGGGGNPFhrswnswQGFNPFSSGGPF 497
Cdd:PRK14276 77 FGGGAGGF-------GGFDGSGGFGGF 96
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-394 |
2.29e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.81 E-value: 2.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 31 CGVNaDVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 110
Cdd:TIGR02917 17 CGDQ-SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 111 RGHLLLKQGKLDEAEDDFKKVlKSNPSEQEEK------EAESQLVKADEMQRLRSQAL-------DAFDGA--------D 169
Cdd:TIGR02917 96 LARAYLLQGKFQQVLDELPGK-TLLDDEGAAEllalrgLAYLGLGQLELAQKSYEQALaidprslYAKLGLaqlalaenR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 170 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 249
Cdd:TIGR02917 175 FDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 250 KLDQDHKrcFAHYkqvkkLNKLIEsaeelIRDGRYTDATSKYESVMKTEPS---------VAEYTVRSKERICHCFSKde 320
Cdd:TIGR02917 255 KKAPNSP--LAHY-----LKALVD-----FQKKNYEDARETLQDALKSAPEylpalllagASEYQLGNLEQAYQYLNQ-- 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 321 kpveairicseVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL----------EKAQRLLKQS 390
Cdd:TIGR02917 321 -----------ILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLgeaylalgdfEKAAEYLAKA 389
|
....
gi 31542563 391 QKRD 394
Cdd:TIGR02917 390 TELD 393
|
|
| PRK14299 |
PRK14299 |
chaperone protein DnaJ; Provisional |
392-459 |
3.26e-13 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237667 [Multi-domain] Cd Length: 291 Bit Score: 69.97 E-value: 3.26e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPD----VNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66
|
|
| SEC63 |
COG5407 |
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ... |
394-457 |
5.78e-13 |
|
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444165 [Multi-domain] Cd Length: 61 Bit Score: 63.48 E-value: 5.78e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKK 457
Cdd:COG5407 1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDrNKGD----PKAEERFKEINEAYELLSDAEKRAR 61
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
36-182 |
1.42e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.34 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 115
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 116 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 182
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
|
| PRK14284 |
PRK14284 |
chaperone protein DnaJ; Provisional |
394-475 |
2.04e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237658 [Multi-domain] Cd Length: 391 Bit Score: 68.72 E-value: 2.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GED-PLDAESQQ 471
Cdd:PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPD---KNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRyGKDgPFAGAGGF 78
|
....
gi 31542563 472 GGGG 475
Cdd:PRK14284 79 GGAG 82
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
36-138 |
2.10e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 2.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 115
Cdd:COG4783 37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116
|
90 100
....*....|....*....|...
gi 31542563 116 LKQGKLDEAEDDFKKVLKSNPSE 138
Cdd:COG4783 117 RALGRPDEAIAALEKALELDPDD 139
|
|
| termin_org_DnaJ |
TIGR03835 |
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ... |
392-468 |
2.25e-12 |
|
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274808 [Multi-domain] Cd Length: 871 Bit Score: 69.46 E-value: 2.25e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAE 468
Cdd:TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDR----NKAPDAASIFAEINEANDVLSNPKKRANYDKyGHDGVDRE 74
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
43-425 |
2.44e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 69.34 E-value: 2.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 43 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 122
Cdd:TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFD 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 123 EAEDDFKKVLKS---NPS-----------EQEEKEAESQLVKADEMQR-----LRSQALDAFDGADYTAAITFLDKILEV 183
Cdd:TIGR02917 449 KALAAAKKLEKKqpdNASlhnllgaiylgKGDLAKAREAFEKALSIEPdffpaAANLARIDIQEGNPDDAIQRFEKVLTI 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 184 CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA--- 260
Cdd:TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLmlg 608
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 261 -HYKQVKKLNKLIESAEELI-RDGRYTDA---TSKYESVMKTEPSVAEYTVRSKERICHCFS----------KDEKPVEA 325
Cdd:TIGR02917 609 rAQLAAGDLNKAVSSFKKLLaLQPDSALAlllLADAYAVMKNYAKAITSLKRALELKPDNTEaqiglaqlllAAKRTESA 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 326 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIReGLEKAQRLLKQSQK------------- 392
Cdd:TIGR02917 689 KKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEavktleawlkthp 767
|
410 420 430
....*....|....*....|....*....|....*...
gi 31542563 393 -----RDYYKILGVKRNaKKQEIIKAYRKLaLQWHPDN 425
Cdd:TIGR02917 768 ndavlRTALAELYLAQK-DYDKAIKHYQTV-VKKAPDN 803
|
|
| CbpA |
COG2214 |
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; |
393-459 |
3.30e-12 |
|
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
Pssm-ID: 441816 [Multi-domain] Cd Length: 91 Bit Score: 62.43 E-value: 3.30e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:COG2214 5 KDHYAVLGVPPDASLEEIRQAYRRLAKLLHPD--RGGELKALAEELFQRLNEAYEVLSDPERRAEYD 69
|
|
| PRK14279 |
PRK14279 |
molecular chaperone DnaJ; |
393-499 |
3.42e-12 |
|
molecular chaperone DnaJ;
Pssm-ID: 237655 [Multi-domain] Cd Length: 392 Bit Score: 67.84 E-value: 3.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPD-NFQNeeekKKAEKKFIDIAAAKEVLSDPEMRKKFDDgedpLDAESQQ 471
Cdd:PRK14279 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDaNPGD----PAAEERFKAVSEAHDVLSDPAKRKEYDE----TRRLFAG 80
|
90 100
....*....|....*....|....*...
gi 31542563 472 GGGGNPFHRSWNSWQGFNPFSSGGPFRF 499
Cdd:PRK14279 81 GGFGGRRFDGGGGFGGFGTGGDGAEFNL 108
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
47-137 |
5.08e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.11 E-value: 5.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 47 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALpDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED 126
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 31542563 127 DFKKVLKSNPS 137
Cdd:COG3063 81 YLERALELDPS 91
|
|
| PRK14285 |
PRK14285 |
chaperone protein DnaJ; Provisional |
392-494 |
5.88e-12 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172773 [Multi-domain] Cd Length: 365 Bit Score: 66.94 E-value: 5.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFDDgedpLDAESQQ 471
Cdd:PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG---NKEAESIFKEATEAYEVLIDDNKRAQYDR----FGHTAFE 74
|
90 100
....*....|....*....|...
gi 31542563 472 GGGgnpfhrswnswqGFNPFSSG 494
Cdd:PRK14285 75 GGG------------GFEGFSGG 85
|
|
| PTZ00037 |
PTZ00037 |
DnaJ_C chaperone protein; Provisional |
395-477 |
1.15e-11 |
|
DnaJ_C chaperone protein; Provisional
Pssm-ID: 240236 [Multi-domain] Cd Length: 421 Bit Score: 66.38 E-value: 1.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 395 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeekkkaEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAesqQGG 473
Cdd:PTZ00037 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-------PEKFKEISRAYEVLSDPEKRKIYDEyGEEGLEG---GEQ 99
|
....
gi 31542563 474 GGNP 477
Cdd:PTZ00037 100 PADA 103
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
17-426 |
1.18e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.42 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 17 FLLVLVDLQ---YEGAECGVNADVEKHLE-LGKKLLAA------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK 86
Cdd:TIGR02917 265 YLKALVDFQkknYEDARETLQDALKSAPEyLPALLLAGaseyqlGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 87 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--------------SEQEEKEAESQLVKAD 152
Cdd:TIGR02917 345 VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPenaaartqlgisklSQGDPSEAIADLETAA 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 153 EM--QRLRSQ---ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 227
Cdd:TIGR02917 425 QLdpELGRADlllILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 228 ISTLYYQLGDHELSLSEVRECLKLDQDHkrcfahykqVKKLNKLiesAEELIRDGRYTDATSKYESVMKTEP-------S 300
Cdd:TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKN---------LRAILAL---AGLYLRTGNEEEAVAWLEKAAELNPqeiepalA 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 301 VAEYTVRSKErichcfskdekPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 380
Cdd:TIGR02917 573 LAQYYLGKGQ-----------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 31542563 381 EKAQRllkqsqkrdyykilgVKRNAKKqeIIKAYRKlALQWHPDNF 426
Cdd:TIGR02917 642 ADAYA---------------VMKNYAK--AITSLKR-ALELKPDNT 669
|
|
| PRK14296 |
PRK14296 |
chaperone protein DnaJ; Provisional |
391-474 |
3.35e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237666 [Multi-domain] Cd Length: 372 Bit Score: 64.97 E-value: 3.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEDPLDAES 469
Cdd:PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPD----LNKSPDAHDKMVEINEAADVLLDKDKRKQYDQfGHAAFDGSS 77
|
....*
gi 31542563 470 QQGGG 474
Cdd:PRK14296 78 GFSSN 82
|
|
| PRK14287 |
PRK14287 |
chaperone protein DnaJ; Provisional |
392-475 |
3.75e-11 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237659 [Multi-domain] Cd Length: 371 Bit Score: 64.65 E-value: 3.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 392 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD--GEDPldaes 469
Cdd:PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPD----VNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQfgHTDP----- 73
|
....*.
gi 31542563 470 QQGGGG 475
Cdd:PRK14287 74 NQGFGG 79
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
35-262 |
5.05e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.01 E-value: 5.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 35 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 114
Cdd:COG3914 8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 115 LLKQGKLDEAEDDFKKVLKSNPSeqeekEAESQLVKADEMQRLRsqaldafdgaDYTAAITFLDKILEVCVWDAELRELR 194
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPD-----NAEALFNLGNLLLALG----------RLEEALAALRRALALNPDFAEAYLNL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 195 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 262
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
55-196 |
7.17e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 7.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 55 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 134
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542563 135 NPseqeekeaesqlvkaDEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 196
Cdd:COG4235 81 DP---------------DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
47-136 |
1.29e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.97 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 47 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAED 126
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 31542563 127 DFKKVLKSNP 136
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
68-137 |
1.35e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.08 E-value: 1.35e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 68 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 137
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
73-255 |
1.39e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.44 E-value: 1.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 73 AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEqeekeaesqlvkad 152
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 153 emqrlrsqaldafdgadytaaitfldkilevcvwdAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY 232
Cdd:COG4783 72 -----------------------------------PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116
|
170 180
....*....|....*....|...
gi 31542563 233 YQLGDHELSLSEVRECLKLDQDH 255
Cdd:COG4783 117 RALGRPDEAIAALEKALELDPDD 139
|
|
| PRK14292 |
PRK14292 |
chaperone protein DnaJ; Provisional |
394-490 |
1.40e-10 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237662 [Multi-domain] Cd Length: 371 Bit Score: 62.98 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 394 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNfqneEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD-GEdpldAESQQG 472
Cdd:PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDR----NKEKGAAEKFAQINEAYAVLSDAEKRAHYDRfGT----APGAGM 74
|
90
....*....|....*...
gi 31542563 473 GGGNPFhrswnSWQGFNP 490
Cdd:PRK14292 75 PGGDPF-----GGMGFDP 87
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
216-422 |
2.55e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 2.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 216 KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCfahykqvkkLNKLIESAEELirdGRYTDATSKYESVM 295
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA---------LYNLGLAYLRL---GRYEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 296 KTEPSVAEytvrSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 375
Cdd:COG0457 70 ELDPDDAE----ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 31542563 376 IREGLEKAQRLLKQSQK--RDYYKILGVKRNAKKQEIIKAYRKLALQWH 422
Cdd:COG0457 146 ALYNLGIALEKLGRYEEalELLEKLEAAALAALLAAALGEAALALAAAE 194
|
|
| PRK14286 |
PRK14286 |
chaperone protein DnaJ; Provisional |
393-459 |
5.48e-10 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172774 [Multi-domain] Cd Length: 372 Bit Score: 61.16 E-value: 5.48e-10
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNeeeKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG---NKESEEKFKEATEAYEILRDPKKRQAYD 67
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
41-140 |
5.99e-10 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 59.10 E-value: 5.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 41 LELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLqRGHLLLK 117
Cdd:COG2976 94 LLLAKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDEALATLDAVKPEAFAALYAEL-RGDILLA 172
|
90 100
....*....|....*....|...
gi 31542563 118 QGKLDEAEDDFKKVLKSNPSEQE 140
Cdd:COG2976 173 QGDKAEARAAYQKALAALPEDAP 195
|
|
| PRK10266 |
PRK10266 |
curved DNA-binding protein; |
393-478 |
6.81e-09 |
|
curved DNA-binding protein;
Pssm-ID: 182347 [Multi-domain] Cd Length: 306 Bit Score: 57.14 E-value: 6.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqnEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD----GEDPLDAE 468
Cdd:PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD----VSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQlwqhRNDPQFNR 79
|
90
....*....|
gi 31542563 469 SQQGGGGNPF 478
Cdd:PRK10266 80 QFQHGDGQSF 89
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
46-391 |
1.19e-08 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 57.79 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 46 KLLA-AGQLADALSQFHAAVDGDP---DNYIAYYRraTVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKL 121
Cdd:PRK11447 120 RLLAtTGRTEEALASYDKLFNGAPpelDLAVEYWR--LVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 122 DEAEDDFKKVLKSNPSeqeeKEAESQLvkadEMQRLRSQ--------ALDAF-----DGADYTAAITFLD---KILEVCV 185
Cdd:PRK11447 198 DEGFAVLEQMAKSPAG----RDAAAQL----WYGQIKDMpvsdasvaALQKYlqvfsDGDSVAAARSQLAeqqKQLADPA 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 186 WDAELRELRAecfIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRcFAHYKQV 265
Cdd:PRK11447 270 FRARAQGLAA---VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESL 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 266 KKLNK---LIESAEELIRDGRYTDATSKYESVMKTEPS-------VAEYTVRSKErichcfskdekPVEAIRICSEVLQM 335
Cdd:PRK11447 346 LKVNRywlLIQQGDAALKANNLAQAERLYQQARQVDNTdsyavlgLGDVAMARKD-----------YAAAERYYQQALRM 414
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31542563 336 EPDNVNALK-----------DRAEAYlieemydeaIQDYEAAQEHNENDqqIREGLE------KAQRLLKQSQ 391
Cdd:PRK11447 415 DPGNTNAVRglanlyrqqspEKALAF---------IASLSASQRRSIDD--IERSLQndrlaqQAEALENQGK 476
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
37-140 |
1.51e-08 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 55.66 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 37 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAarlQRGHLL 115
Cdd:COG4700 89 VQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKS---SDAHLL 165
|
90 100 110
....*....|....*....|....*....|
gi 31542563 116 L-----KQGKLDEAEDDFKKVLKSNPSEQE 140
Cdd:COG4700 166 YaraleALGDLEAAEAELEALARRYSGPEA 195
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
151-280 |
1.98e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 1.98e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 151 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 230
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 31542563 231 LYYQLGDHELSLSEVRECLKLDQDHKRCFAH----YKQVKKLNKLIESAEELIR 280
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRlaraYRALGRPDEAIAALEKALE 134
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
6-402 |
2.19e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.53 E-value: 2.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 6 SVGSRLGAVFPfllvlvDLQYEGAECGVNADVEK---HLELGKKLL---AAGQLADALSQFHAAVD-GD--PDNYIAYYR 76
Cdd:TIGR00990 263 FVGNYLQSFRP------KPRPAGLEDSNELDEETgngQLQLGLKSPeskADESYEEAARAFEKALDlGKlgEKEAIALNL 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 77 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLvkademqr 156
Cdd:TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL-------- 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 157 lrsqaldafdgadytaaitfldkilevcvwdaelrelraeCFIKeGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 236
Cdd:TIGR00990 409 ----------------------------------------HFIK-GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 237 DHELSLSEVRECLKLDQDHKRCFAHYkqvkklnkliesAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC- 315
Cdd:TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYY------------GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAl 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 316 --FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQKR 393
Cdd:TIGR00990 516 alFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595
|
....*....
gi 31542563 394 DYYKILGVK 402
Cdd:TIGR00990 596 EDYPVLASK 604
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
43-237 |
5.19e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 5.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 43 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 122
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 123 EAEDDFKKVLKSNPSEQE--EKEAESQLVKADemqrlRSQALDAFDGA---------------------DYTAAITFLDK 179
Cdd:TIGR02917 687 SAKKIAKSLQKQHPKAALgfELEGDLYLRQKD-----YPAAIQAYRKAlkrapssqnaiklhrallasgNTAEAVKTLEA 761
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 180 ILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 237
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD 819
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
237-459 |
4.70e-07 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 52.87 E-value: 4.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 237 DHELSlsevrECLKLDQDhkRCFAHYKQvKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV-RSKERICHC 315
Cdd:PTZ00341 402 DDDSS-----DALYTDED--LLFDLEKQ-KYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNAdDSGEQQSDD 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 316 FSKDEKPVEAI------------RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-NENDQQIREGLEK 382
Cdd:PTZ00341 474 ESGEHQSVNEIveeqsvnehveePTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHvEEEISTAEEHIEE 553
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 383 AQRLLKQSQKRD---------YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQneeeKKKAEKKFIDIAAAKEVLSDPE 453
Cdd:PTZ00341 554 PASDVQQDSEAAptieipdtlFYDILGVGVNADMKEISERYFKLAENYYPPKRS----GNEGFHKFKKINEAYQILGDID 629
|
....*.
gi 31542563 454 MRKKFD 459
Cdd:PTZ00341 630 KKKMYN 635
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
138-377 |
4.71e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 52.30 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 138 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 217
Cdd:COG3914 28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 218 KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRcfAHYKQVKKLNKLiesaeelirdGRYTdatskyesvmkt 297
Cdd:COG3914 108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE--AYLNLGEALRRL----------GRLE------------ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 298 epsvaeytvrskerichcfskdekpvEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 377
Cdd:COG3914 164 --------------------------EAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
40-133 |
5.35e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 50.68 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------KMD 103
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELdpndperalwlylaerKLD 189
|
90 100 110
....*....|....*....|....*....|....
gi 31542563 104 FTAARL----QRGHLLLKQGKLDEAEDDFKKVLK 133
Cdd:COG4785 190 PEKALAllleDWATAYLLQGDTEEARELFKLALA 223
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
45-151 |
1.11e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 47.29 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 45 KKLLAAGQLADALSQFHAAVDGDPDNYI---AYYRRATVFLAMGKSKAALPDLTKVIALKMDFT---AARLQRGHLLLKQ 118
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLEL 80
|
90 100 110
....*....|....*....|....*....|...
gi 31542563 119 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 151
Cdd:COG1729 81 GDYDKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| DjlA |
COG1076 |
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones]; |
391-426 |
2.09e-06 |
|
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440694 [Multi-domain] Cd Length: 75 Bit Score: 45.56 E-value: 2.09e-06
10 20 30
....*....|....*....|....*....|....*.
gi 31542563 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 426
Cdd:COG1076 2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRL 37
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
41-141 |
3.05e-06 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 47.96 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 41 LELGKKLLAAGQLADALSQFHAAVDGDPDNY---IAYYRRATVFLAMGKSKAALPDLTKVIAlkMDFTAARLQ-RGHLLL 116
Cdd:pfam09976 80 LLLAKAAVEAGDLAAAKAQLEWVADNAKDEAlkaLARLRLARVLLAQGKYDEALKTLDAVTP--AAFAALYAElRGDILV 157
|
90 100
....*....|....*....|....*
gi 31542563 117 KQGKLDEAEDDFKKVLKSNPSEQEE 141
Cdd:pfam09976 158 AQGKTDEARAAYQAALDALDAGAPR 182
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
320-425 |
3.34e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 320 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL----------EKAQRLLKQ 389
Cdd:COG4783 18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLglallkagdyDEALALLEK 97
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 31542563 390 SQKRD-----YYKILGV--KRNAKKQEIIKAYRKlALQWHPDN 425
Cdd:COG4783 98 ALKLDpehpeAYLRLARayRALGRPDEAIAALEK-ALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
123-252 |
3.69e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 3.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 123 EAEDDFKKVLKSNPseqeeKEAESQLVKADEMQRLRsqaldafdgaDYTAAITFLDKILEVCVWDAELRELRAECFIKEG 202
Cdd:COG4235 1 EAIARLRQALAANP-----NDAEGWLLLGRAYLRLG----------RYDEALAAYEKALRLDPDNADALLDLAEALLAAG 65
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 31542563 203 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 252
Cdd:COG4235 66 DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
47-253 |
7.45e-06 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 46.99 E-value: 7.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 47 LLAAGQ-LADALSQFHAAVDGDPDNYIAYYR-RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA 124
Cdd:NF040959 11 LLVSGRiLNNMVNGYNRLFSLSDRDRAKMYRnKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 125 EDDFKKVLKSNPseqeekeaesqlvkaDEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP 204
Cdd:NF040959 91 IKVLEKVLSLAP---------------DHVKAAYRKGVALLKIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQY 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 31542563 205 RKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 253
Cdd:NF040959 156 DKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAMELEE 204
|
|
| djlA |
PRK09430 |
co-chaperone DjlA; |
354-424 |
1.52e-05 |
|
co-chaperone DjlA;
Pssm-ID: 236512 [Multi-domain] Cd Length: 267 Bit Score: 46.73 E-value: 1.52e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31542563 354 EMYDEAIQDYEAAQEHNENDQQirEGLEKAQRllkQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 424
Cdd:PRK09430 166 FQFDQLLRMMQAGFRFQQQQGG--GGYQQAQR---GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
106-252 |
1.70e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 106 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGaDYTAAITFLDKILEVCV 185
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG-DFEESLALLEQALQLDP 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 186 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 252
Cdd:COG5010 86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
40-255 |
1.74e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.06 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI------ALKMDFTAARLQRGH 113
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAeridraLALPDLAQLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 114 LLLKQGKLDEAEDDFKKVLKSNPSeqeekeaesqlvkademqrlrsqaldafdgadytaaitfldkilevcvwDAELREL 193
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELDPD-------------------------------------------------LAEAYNN 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542563 194 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 255
Cdd:COG4785 113 RGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
275-383 |
2.26e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 275 AEELIRDGRYTDATSKYESVMKTEPSVAEYtvrsKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE 354
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADA----LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100 110
....*....|....*....|....*....|..
gi 31542563 355 MYDEAIQDYEAAQEHNEND---QQIREGLEKA 383
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
315-389 |
2.42e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.57 E-value: 2.42e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542563 315 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 389
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
18-168 |
3.19e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 18 LLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 97
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31542563 98 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQeekEAESQLVKADEMQRLRSQALDAFDGA 168
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---NAYSNLAALLLSLGQDDEAKAALQRA 148
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
80-168 |
3.92e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 80 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEdDFKKVLKSNPseqEEKEAESQLVKADEMQRLRS 159
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDP---NNAEALLNLAELLLELGDYD 76
|
....*....
gi 31542563 160 QALDAFDGA 168
Cdd:COG3063 77 EALAYLERA 85
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
36-172 |
4.47e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.00 E-value: 4.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 115
Cdd:COG0457 109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 31542563 116 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA 172
Cdd:COG0457 189 ALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
34-394 |
5.43e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 5.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 34 NADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 113
Cdd:TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 114 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEmqrlrsqaldafdgaDYTAAITFLDKILEVCVWDAELREL 193
Cdd:TIGR02917 644 AYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK---------------RTESAKKIAKSLQKQHPKAALGFEL 708
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 194 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFyKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYkqvkklnklie 273
Cdd:TIGR02917 709 EGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL----------- 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 274 sAEELIRDGRYTDATSKYESVMKTEPSVA------EYTVRSKerichcfskdeKPVEAIRICSEVLQMEPDNVNALKDRA 347
Cdd:TIGR02917 777 -AELYLAQKDYDKAIKHYQTVVKKAPDNAvvlnnlAWLYLEL-----------KDPRALEYAERALKLAPNIPAILDTLG 844
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 31542563 348 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAqrlLKQSQKRD 394
Cdd:TIGR02917 845 WLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA---LLATGRKA 888
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
172-304 |
8.77e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 8.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 172 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 251
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 31542563 252 DQDHKRcfAHYkqvkklnkliESAEELIRDGRYTDATSKYESVMKTEPSVAEY 304
Cdd:COG4235 81 DPDNPE--ALY----------LLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
47-254 |
2.63e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 42.98 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 47 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA---LPDLTKVIALkmdfTAARLQRGHLLLKQGKLDE 123
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELlelLPALRKHKAL----SAEEAQALERRAYLGLLRQ 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 124 A---EDDFKKVLKSNPSEQEEKEAE-----SQLVKADEMQRLRSQALDAFD---------------GADYTAAITFLDKI 180
Cdd:COG3071 171 AardAEALKALWKALPRAERRDPELaaayaRALIALGDHDEAERLLREALKrqwdprlvrlygrlqGGDPAKQLKRAEKW 250
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31542563 181 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDnTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 254
Cdd:COG3071 251 LKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
324-394 |
4.24e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.37 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 324 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL----------EKAQRLLKQSQKR 393
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLaeallaagdtEEAEELLERALAL 80
|
.
gi 31542563 394 D 394
Cdd:COG4235 81 D 81
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
147-280 |
4.77e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 147 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY 226
Cdd:COG5010 13 YLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY 92
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 31542563 227 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 280
Cdd:COG5010 93 NLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
197-303 |
6.90e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 197 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLsEVRECLKLDQDHKRCFAHYkqvkklnkliesAE 276
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNL------------AE 67
|
90 100
....*....|....*....|....*..
gi 31542563 277 ELIRDGRYTDATSKYESVMKTEPSVAE 303
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPSALR 94
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
107-137 |
8.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 8.93e-04
10 20 30
....*....|....*....|....*....|.
gi 31542563 107 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 137
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
324-420 |
1.05e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 324 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK--ILGV 401
Cdd:COG4785 125 AALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLedWATA 204
|
90
....*....|....*....
gi 31542563 402 KRNAKKQEIIKAYRKLALQ 420
Cdd:COG4785 205 YLLQGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
315-394 |
1.12e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 315 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQdYEAAQEHNENDQQIREGL----------EKAQ 384
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLaelllelgdyDEAL 79
|
90
....*....|
gi 31542563 385 RLLKQSQKRD 394
Cdd:COG3063 80 AYLERALELD 89
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
107-137 |
1.78e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 1.78e-03
10 20 30
....*....|....*....|....*....|.
gi 31542563 107 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 137
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
340-373 |
1.89e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.89e-03
10 20 30
....*....|....*....|....*....|....
gi 31542563 340 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 373
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ZUO1 |
COG5269 |
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ... |
388-482 |
2.02e-03 |
|
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227594 [Multi-domain] Cd Length: 379 Bit Score: 40.40 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542563 388 KQSQKRDYYKILGVKR---NAKKQEIIKAYRKLALQWHPDNfQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDP 464
Cdd:COG5269 38 KNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK-TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116
|
90
....*....|....*...
gi 31542563 465 LDAESQQGGGGNPFHRSW 482
Cdd:COG5269 117 ADVPPPRIYTPDEFFEVW 134
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
319-382 |
2.12e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.79 E-value: 2.12e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31542563 319 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 382
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
340-373 |
2.23e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 2.23e-03
10 20 30
....*....|....*....|....*....|....
gi 31542563 340 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 373
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
324-377 |
2.41e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.51 E-value: 2.41e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 31542563 324 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 377
Cdd:COG4785 91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144
|
|
| PRK14288 |
PRK14288 |
molecular chaperone DnaJ; |
395-459 |
2.44e-03 |
|
molecular chaperone DnaJ;
Pssm-ID: 172776 [Multi-domain] Cd Length: 369 Bit Score: 40.06 E-value: 2.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542563 395 YYKILGVKRNAKKQEIIKAYRKLALQWHPDnfqNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFD 459
Cdd:PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPD---RNAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
36-100 |
4.57e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 4.57e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542563 36 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 100
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
40-114 |
4.63e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.89 E-value: 4.63e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542563 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYI---AYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 114
Cdd:COG1729 33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
320-387 |
6.06e-03 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 38.65 E-value: 6.06e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31542563 320 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ---IREGLEKAQRLL 387
Cdd:COG2912 193 KDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPEDPDaelIKEQLEELRRKL 263
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
40-100 |
6.11e-03 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 37.27 E-value: 6.11e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31542563 40 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 100
Cdd:TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114
|
|
| |
