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Conserved domains on  [gi|6677877|ref|NP_033162|]
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scrapie-responsive protein 1 precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SCRG1 super family cl21088
Scrapie-responsive protein 1; This protein family has an important function in acting against ...
 22-97 3.09e-45

Scrapie-responsive protein 1; This protein family has an important function in acting against the prion protein, Scrapie.This family of proteins is found in eukaryotes. Proteins in this family are approximately 98 amino acids in length.


The actual alignment was detected with superfamily member pfam15224:

Pssm-ID: 464569  Cd Length: 76  Bit Score: 140.34  E-value: 3.09e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6677877    22 PSSRLSCYRKLLKDRNCHNLPEGRADLKLIDANVQHHFWDGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNN 97
Cdd:pfam15224  1 PSNRLSCYKKILKDHNCHSIPEGVANLRPIDGNLQDHFWEGKGCEMVCYCNFSELLCCPKDIFFGPKISFVIPCNS 76
 
Name Accession Description Interval E-value
SCRG1 pfam15224
Scrapie-responsive protein 1; This protein family has an important function in acting against ...
 22-97 3.09e-45

Scrapie-responsive protein 1; This protein family has an important function in acting against the prion protein, Scrapie.This family of proteins is found in eukaryotes. Proteins in this family are approximately 98 amino acids in length.


Pssm-ID: 464569  Cd Length: 76  Bit Score: 140.34  E-value: 3.09e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6677877    22 PSSRLSCYRKLLKDRNCHNLPEGRADLKLIDANVQHHFWDGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNN 97
Cdd:pfam15224  1 PSNRLSCYKKILKDHNCHSIPEGVANLRPIDGNLQDHFWEGKGCEMVCYCNFSELLCCPKDIFFGPKISFVIPCNS 76
 
Name Accession Description Interval E-value
SCRG1 pfam15224
Scrapie-responsive protein 1; This protein family has an important function in acting against ...
 22-97 3.09e-45

Scrapie-responsive protein 1; This protein family has an important function in acting against the prion protein, Scrapie.This family of proteins is found in eukaryotes. Proteins in this family are approximately 98 amino acids in length.


Pssm-ID: 464569  Cd Length: 76  Bit Score: 140.34  E-value: 3.09e-45
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6677877    22 PSSRLSCYRKLLKDRNCHNLPEGRADLKLIDANVQHHFWDGKGCEMICYCNFSELLCCPKDVFFGPKISFVIPCNN 97
Cdd:pfam15224  1 PSNRLSCYKKILKDHNCHSIPEGVANLRPIDGNLQDHFWEGKGCEMVCYCNFSELLCCPKDIFFGPKISFVIPCNS 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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