NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|132626811|ref|NP_054778|]
View 

regulator of cell cycle RGCC [Homo sapiens]

Protein Classification

RGCC domain-containing protein( domain architecture ID 10633503)

RGCC domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RGCC pfam15151
Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. ...
 26-137 3.51e-53

Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 130 amino acids in length. There is a conserved KLGDT sequence motif.


:

Pssm-ID: 464535  Cd Length: 128  Bit Score: 163.93  E-value: 3.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 132626811   26 EDLSDALCEFDAVLADFASPFHERHFHYEEHLERMKRRSSASVSDSsGFSDSESADSLYRNSFSFSDEKLNSPTDSTPAL 105
Cdd:pfam15151  18 ADLSDVLCEFDAVIEDFTSPAEKRHFRYDEHLKTMKRRSSASVSDS-GISDSESADSLYRNSFSFSDEKLNSPTVSSPSL 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 132626811  106 LSATVTPQKAKLGDTKELEAFIADLDKTLASM 137
Cdd:pfam15151  97 SSPLVTPPKAKLGDTKELEDFIADLDRTLESM 128
 
Name Accession Description Interval E-value
RGCC pfam15151
Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. ...
 26-137 3.51e-53

Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 130 amino acids in length. There is a conserved KLGDT sequence motif.


Pssm-ID: 464535  Cd Length: 128  Bit Score: 163.93  E-value: 3.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 132626811   26 EDLSDALCEFDAVLADFASPFHERHFHYEEHLERMKRRSSASVSDSsGFSDSESADSLYRNSFSFSDEKLNSPTDSTPAL 105
Cdd:pfam15151  18 ADLSDVLCEFDAVIEDFTSPAEKRHFRYDEHLKTMKRRSSASVSDS-GISDSESADSLYRNSFSFSDEKLNSPTVSSPSL 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 132626811  106 LSATVTPQKAKLGDTKELEAFIADLDKTLASM 137
Cdd:pfam15151  97 SSPLVTPPKAKLGDTKELEDFIADLDRTLESM 128
 
Name Accession Description Interval E-value
RGCC pfam15151
Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. ...
 26-137 3.51e-53

Response gene to complement 32 protein family; This family of proteins is found in eukaryotes. Proteins in this family are typically between 44 and 130 amino acids in length. There is a conserved KLGDT sequence motif.


Pssm-ID: 464535  Cd Length: 128  Bit Score: 163.93  E-value: 3.51e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 132626811   26 EDLSDALCEFDAVLADFASPFHERHFHYEEHLERMKRRSSASVSDSsGFSDSESADSLYRNSFSFSDEKLNSPTDSTPAL 105
Cdd:pfam15151  18 ADLSDVLCEFDAVIEDFTSPAEKRHFRYDEHLKTMKRRSSASVSDS-GISDSESADSLYRNSFSFSDEKLNSPTVSSPSL 96

                          90       100       110
                  ....*....|....*....|....*....|..
gi 132626811  106 LSATVTPQKAKLGDTKELEAFIADLDKTLASM 137
Cdd:pfam15151  97 SSPLVTPPKAKLGDTKELEDFIADLDRTLESM 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH