|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
425-701 |
1.20e-24 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 105.58 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 425 LEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYwfmgeETRKDKTKALTHFLKAARLDTYMGKVFCYLGHYYR 504
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLY-----RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 505 DVvGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTqkASAGTAKWAWLRRGLYYLKAGQHSQAV 584
Cdd:COG2956 88 KA-GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLL--KLGPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 585 ADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKED 664
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
250 260 270
....*....|....*....|....*....|....*..
gi 7662078 665 YVPalkglgecHLMMAKAALVDYLDGKAVDYIEKALE 701
Cdd:COG2956 245 DDL--------LLALADLLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
2-673 |
8.00e-21 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 99.77 E-value: 8.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 2 SSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLA 81
Cdd:TIGR02917 18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 82 NLYekynhinakdDLPGVYQKLLDLYESVDKQKWCD--VCKKLVDLYYQEKKHLEVARTWHKLIKTRQEQGAENEelhql 159
Cdd:TIGR02917 98 RAY----------LLQGKFQQVLDELPGKTLLDDEGaaELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAK----- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 160 wRKLTQFLAEstEDQNNETQQLLFTAfenalgLSDKIPSEDHQVLYRHFIQSLSKFPHESARLKKAcegmINIYPTVQYP 239
Cdd:TIGR02917 163 -LGLAQLALA--ENRFDEARALIDEV------LTADPGNVDALLLKGDLLLSLGNIELALAAYRKA----IALRPNNIAV 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 240 LEVLCLHLIESGNLtDEGQQYccrlVEMDSKSGPG-LIGLGIKAL---QDKKYEDAVRNLTEGLKESPVCTSGWYHLAEA 315
Cdd:TIGR02917 230 LLALATILIEAGEF-EEAEKH----ADALLKKAPNsPLAHYLKALvdfQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 316 QVKMHRPKEAVLSCSQALKIVDNlgasgnSLYQRNLClhlkAEALIKLSDYDsseEAIRTLDQISDAD-NIPGLLVLKSL 394
Cdd:TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPN------SHQARRLL----ASIQLRLGRVD---EAIATLSPALGLDpDDPAALSLLGE 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 395 AYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETR-- 472
Cdd:TIGR02917 372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKal 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 473 --------KDKTKALTHFLKAArldTYMGKvfcylghyyrdvvGDKNRARGCYRKAFELD-------------DTDAESG 531
Cdd:TIGR02917 452 aaakklekKQPDNASLHNLLGA---IYLGK-------------GDLAKAREAFEKALSIEpdffpaaanlariDIQEGNP 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 532 AAAVD---------------------LSVELEDMEMALAILTTVTQKASAGTAKWAWLRRglYYLKAGQHSQAVADLQAA 590
Cdd:TIGR02917 516 DDAIQrfekvltidpknlrailalagLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ--YYLGKGQLKKALAILNEA 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 591 LRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALK 670
Cdd:TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
|
...
gi 7662078 671 GLG 673
Cdd:TIGR02917 674 GLA 676
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
306-594 |
1.33e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 90.56 E-value: 1.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 306 TSGWYHLAEAQVKMHRPKEAVLSCSQALKIvdnlgasgnslYQRNLCLHLK-AEALIKLSDYDsseEAIRTLDQI--SDA 382
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALEL-----------DPETVEAHLAlGNLYRRRGEYD---RAIRIHQKLleRDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 383 DNIPGLLVLkSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGL 462
Cdd:COG2956 74 DRAEALLEL-AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 463 TYwfmgeETRKDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDvVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELE 542
Cdd:COG2956 153 LY-----LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE-QGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 7662078 543 DMEMALAILTTVTQKASAGTakwAWLRRGLYYLKAGQHSQAVADLQAALRAD 594
Cdd:COG2956 227 DPEEALELLRKALELDPSDD---LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
417-656 |
3.38e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 88.91 E-value: 3.38e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 417 PDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDTYMGKVF 496
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-----RYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 497 CYLGHYYRDvVGDKNRARGCYRKAFELDDTDAEsgaaavdlsveledmemalailttvtqkasagtakwAWLRRGLYYLK 576
Cdd:COG0457 80 NNLGLALQA-LGRYEEALEDYDKALELDPDDAE------------------------------------ALYNLGLALLE 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 577 AGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQ 656
Cdd:COG0457 123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
447-702 |
4.24e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 88.53 E-value: 4.24e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 447 LEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDVvGDKNRARGCYRKAFELDDT 526
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLG-----RYEEAIEDYEKALELDPDDAEALYNLGLAYLRL-GRYEEALADYEQALELDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 527 DAEsgaaavdlsveledmemalailttvtqkasagtakwAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGE 606
Cdd:COG0457 75 DAE------------------------------------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGL 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 607 AYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAALVD 686
Cdd:COG0457 119 ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
250
....*....|....*.
gi 7662078 687 YLDGKAVDYIEKALEY 702
Cdd:COG0457 199 LLLALEQALRKKLAIL 214
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
238-1115 |
5.85e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.61 E-value: 5.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 238 YPLEVLCLHLIESGNLTDEGQQYCCRLVEMDSKSGPGLIGL----GIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLA 313
Cdd:TIGR02917 87 YPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELlalrGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 314 EAQVKMHRPKEAVLSCSQALKI-VDNLGAsgnslyqrnlcLHLKAEALIKLSDYDSSEEAIRTLDQIsDADNIPGLLVLK 392
Cdd:TIGR02917 167 QLALAENRFDEARALIDEVLTAdPGNVDA-----------LLLKGDLLLSLGNIELALAAYRKAIAL-RPNNIAVLLALA 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 393 SLAYRnKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGE--- 469
Cdd:TIGR02917 235 TILIE-AGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNleq 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 470 -ETRKDKT-KALTHFLKAARL--DTYMgkvfcylghyyrdVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDME 545
Cdd:TIGR02917 314 aYQYLNQIlKYAPNSHQARRLlaSIQL-------------RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFE 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 546 MALAILTTVTQKASAGTAkwAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKAS 625
Cdd:TIGR02917 381 KAAEYLAKATELDPENAA--ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 626 ELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALEYftc 705
Cdd:TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD-------DAIQRFEKVLTI--- 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 706 alqHRADVSCLWKLAGdactcLYAVAPSKVNVhvlGVLLGQKEGKQvlKKNELLHLGgrcygralklmstsntwcdLGIN 785
Cdd:TIGR02917 529 ---DPKNLRAILALAG-----LYLRTGNEEEA---VAWLEKAAELN--PQEIEPALA-------------------LAQY 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 786 YYRQAQhlaetgsnmndlkelLEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGIGNYALAqhCFIKSIQSEQINAVAWT 865
Cdd:TIGR02917 577 YLGKGQ---------------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS--SFKKLLALQPDSALALL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 866 NLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGSYDTMDLFRHTTElNMHTEGALGYAYwvcttlqdks 945
Cdd:TIGR02917 640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ-KQHPKAALGFEL---------- 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 946 nrETELYqynILQMNAIPAAQvilnKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDqdtyNVAIRN 1025
Cdd:TIGR02917 709 --EGDLY---LRQKDYPAAIQ----AYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----AVLRTA 775
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1026 YGRLLCSTGEYDKAIQAFKSTpLEVLEDiigFALAL---FMKGLYKESSKAYERALSIVESEQDKAHILTALAITEYKQG 1102
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTV-VKKAPD---NAVVLnnlAWLYLELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKG 851
|
890
....*....|...
gi 7662078 1103 KTDVAKTLLFKCS 1115
Cdd:TIGR02917 852 EADRALPLLRKAV 864
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
322-1272 |
1.30e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 92.45 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 322 PKEAVLSCSQALKIVDNLGASGnslyqrnlclHLKAEALIKLSDYDSSEEAIRTLDQISDADNipGLLVLKSLAYRNKGS 401
Cdd:TIGR02917 38 YKAAIIQLKNALQKDPNDAEAR----------FLLGKIYLALGDYAAAEKELRKALSLGYPKN--QVLPLLARAYLLQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 402 FDEAAKIMEDL-LSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYhyQLGLTYWFMGE----ETRKDKT 476
Cdd:TIGR02917 106 FQQVLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAEnrfdEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 477 KALTHFLKAArldtymgKVFCYLGHYYRdVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQ 556
Cdd:TIGR02917 184 EVLTADPGNV-------DALLLKGDLLL-SLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 557 KASaGTAKWAWLRrGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVF 636
Cdd:TIGR02917 256 KAP-NSPLAHYLK-ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 637 KVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLmmakaALVDYldgkavdyiEKALEYFtcalqhrADVScl 716
Cdd:TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYL-----ALGDF---------EKAAEYL-------AKAT-- 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 717 wklagdactclyAVAPSKVNVHV-LGVL-LGQKEGKQVLKknELLHlggrcygrALKLMS-TSNTWCDLGINYYRQAQhl 793
Cdd:TIGR02917 391 ------------ELDPENAAARTqLGISkLSQGDPSEAIA--DLET--------AAQLDPeLGRADLLLILSYLRSGQ-- 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 794 aetgsnmndlkelLEKSLHCLKKAVRLDSNNHLYWNALGvvACYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLT 873
Cdd:TIGR02917 447 -------------FDKALAAAKKLEKKQPDNASLHNLLG--AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 874 NENIEQAHEAFKMAQSLDPSylmcwigqaliaeavgsydtmdlfrhttelnmHTEGALGYAywvctTLQDKSNRETElyq 953
Cdd:TIGR02917 512 EGNPDDAIQRFEKVLTIDPK--------------------------------NLRAILALA-----GLYLRTGNEEE--- 551
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 954 ynilqmnaipAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKeaanayqrAILLLQTAedQDTYNVAIRNY---GRLL 1030
Cdd:TIGR02917 552 ----------AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK--------ALAILNEA--ADAAPDSPEAWlmlGRAQ 611
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1031 CSTGEYDKAIQAFKSTPLEVLEDIIGFALALFMKGLYKESSKAYERALSIVESEQDKAHILTALAITEYKQGKTDVAKTL 1110
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1111 LfkcSILKEPTTESLQALCALG-LAMQDATLsKAALNELLKHIKhKDSNYQRCLLTSAIYALQGRSVAVQKQISKAVHSN 1189
Cdd:TIGR02917 692 A---KSLQKQHPKAALGFELEGdLYLRQKDY-PAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1190 PGDPALWSLLS----------------RVVAQYAQRNAkggVVAGNVAHILDSNHGKKALLY-TAVNQLAMGSSSAED-- 1250
Cdd:TIGR02917 767 PNDAVLRTALAelylaqkdydkaikhyQTVVKKAPDNA---VVLNNLAWLYLELKDPRALEYaERALKLAPNIPAILDtl 843
|
970 980 990
....*....|....*....|....*....|
gi 7662078 1251 --------EKNTALKTIQKAALLSPGDPAI 1272
Cdd:TIGR02917 844 gwllvekgEADRALPLLRKAVNIAPEAAAI 873
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
389-614 |
3.98e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 79.67 E-value: 3.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 389 LVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMG 468
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 469 eetrkDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDvVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMAL 548
Cdd:COG0457 91 -----RYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7662078 549 AILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGY 614
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
352-593 |
5.58e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.58 E-value: 5.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 352 CLHLKAEALIKLSDYdssEEAIRTLDQ-ISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIH 430
Cdd:COG0457 10 AYNNLGLAYRRLGRY---EEAIEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 431 FTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDvVGDK 510
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-----RYDEAIEAYERALELDPDDADALYNLGIALEK-LGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 511 NRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAA 590
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
...
gi 7662078 591 LRA 593
Cdd:COG0457 241 YQY 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
567-702 |
1.11e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.31 E-value: 1.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 567 WLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILG 646
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 7662078 647 KYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALEY 702
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE-------KAIEVLERLLKL 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
565-701 |
1.74e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 72.15 E-value: 1.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 565 WAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQI 644
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 645 LGKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALE 701
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD-------EAIAALEKALE 134
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
540-665 |
5.30e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.61 E-value: 5.30e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 540 ELEDMEMALAILTTVTQKASagTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALK 619
Cdd:COG4783 16 LAGDYDEAEALLEKALELDP--DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 7662078 620 SFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKKKEDY 665
Cdd:COG4783 94 LLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
503-701 |
1.65e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.48 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 503 YRDVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAKW----AWLRRGLYYLKAG 578
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdlaqLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 579 QHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQ-- 656
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEka 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 7662078 657 --------------MIIKKKEDYVPALKGLGEcHLMMAKAALVDYldGKAVDYIEKALE 701
Cdd:COG4785 168 leldpndperalwlYLAERKLDPEKALALLLE-DWATAYLLQGDT--EEARELFKLALA 223
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
2-701 |
2.46e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 2.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 2 SSKEVKTALksARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPD--QLLAWQG 79
Cdd:TIGR02917 157 RSLYAKLGL--AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNniAVLLALA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 80 LANLYEKynhinakdDLPGVYQKLLDLYESVDKQKWCDVCKKLVDlyYQEKKHlEVARTWhkliktrqeqgaeneelhql 159
Cdd:TIGR02917 235 TILIEAG--------EFEEAEKHADALLKKAPNSPLAHYLKALVD--FQKKNY-EDARET-------------------- 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 160 wrkltqflAESTEDQNNE--TQQLLFTAFENALGlsdkipseDHQVLYRHFIQSLSKFPHEsarlkkacegminiyptvQ 237
Cdd:TIGR02917 284 --------LQDALKSAPEylPALLLAGASEYQLG--------NLEQAYQYLNQILKYAPNS------------------H 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 238 YPLEVLCLHLIESGNlTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQV 317
Cdd:TIGR02917 330 QARRLLASIQLRLGR-VDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 318 KMHRPKEAVLSCSQALKIVDNLGASGNSLyqrnlclhlkAEALIKLSDYDSSEEAIRTLdqISDADNIPGLLVLKSLAYR 397
Cdd:TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLL----------ILSYLRSGQFDKALAAAKKL--EKKQPDNASLHNLLGAIYL 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 398 NKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRAL------------------------------ 447
Cdd:TIGR02917 477 GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLtidpknlrailalaglylrtgneeeavawl 556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 448 ----EKDTE-------VAEYHYQLG-------------------LTYWFMGEETR---KDKTKALTHFLKAARLDTYMGK 494
Cdd:TIGR02917 557 ekaaELNPQeiepalaLAQYYLGKGqlkkalailneaadaapdsPEAWLMLGRAQlaaGDLNKAVSSFKKLLALQPDSAL 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 495 VFCYLGHYYRdVVGDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVT---QKASAGTAKWAWLrrg 571
Cdd:TIGR02917 637 ALLLLADAYA-VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQkqhPKAALGFELEGDL--- 712
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 572 lyYLKAGQHSQAVADLQAALRADPKDFNCWEsLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEA 651
Cdd:TIGR02917 713 --YLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKA 789
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 7662078 652 VAQYQMIIKKKEDYVPALKGLgechlmmAKAALVDYlDGKAVDYIEKALE 701
Cdd:TIGR02917 790 IKHYQTVVKKAPDNAVVLNNL-------AWLYLELK-DPRALEYAERALK 831
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
566-701 |
2.09e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.95 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 566 AWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQIL 645
Cdd:COG3914 80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 7662078 646 GKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALE 701
Cdd:COG3914 160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE-------EAIAAYRRALE 208
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
582-701 |
2.43e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.41 E-value: 2.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 582 QAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKK 661
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 7662078 662 KEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALE 701
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA-------EAIAAWQKLLA 113
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
353-489 |
8.66e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 8.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 353 LHLKAEALIKLSDYDSSEEAIRTLDQISDADniPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFT 432
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDN--PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 433 KKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLD 489
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG-----RPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
353-514 |
1.08e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.64 E-value: 1.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 353 LHLKAEALIKLSDYDSSEEAIRTLDQIsDADNIPGLLVLkSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFT 432
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALAL-NPDNAEALFNL-GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 433 KKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYwfmgeETRKDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDVVGDKNR 512
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAEALNNLGNAL-----QDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVY 233
|
..
gi 7662078 513 AR 514
Cdd:COG3914 234 DR 235
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
353-598 |
1.27e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.25 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 353 LHLKAEALIKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFT 432
Cdd:COG3914 11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 433 KKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDTYMGKVFCYLGHYYRDvVGDKNR 512
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALG-----RLEEALAALRRALALNPDFAEAYLNLGEALRR-LGRLEE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 513 ARGCYRKAFELDDTDAEsgaaavdlsveledmemalailttvtqkasagtakwAWLRRGLYYLKAGQHSQAVADLQAALR 592
Cdd:COG3914 165 AIAALRRALELDPDNAE------------------------------------ALNNLGNALQDLGRLEEAIAAYRRALE 208
|
....*.
gi 7662078 593 ADPKDF 598
Cdd:COG3914 209 LDPDNA 214
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
423-701 |
1.50e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 69.25 E-value: 1.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 423 HALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDTYM----GKVFCY 498
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAllllAALLEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 499 LGHYYRDVvGDKNRARGCYRKAFELDDTDAEsgaaavdlsveledmemalailttvtqkasagtakwAWLRRGLYYLKAG 578
Cdd:COG3914 84 AALLLQAL-GRYEEALALYRRALALNPDNAE------------------------------------ALFNLGNLLLALG 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 579 QHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMI 658
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 7662078 659 IKKKEDYVPALkglgeCHLMMAKAALVDYLDGKAVDYIEKALE 701
Cdd:COG3914 207 LELDPDNADAH-----SNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
807-1030 |
7.41e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 7.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 807 LEKSLHCLKKAVRLDSNNHLYWNALGVVacYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKM 886
Cdd:COG0457 24 YEEAIEDYEKALELDPDDAEALYNLGLA--YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 887 AQSLDPSYLMCWIGQALIAEAVGSYDT-MDLFRHTTELNMHTEGALgYAYWVCTTLQDKSNRETELYQYNILQMNAIPAA 965
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYDEaIEAYERALELDPDDADAL-YNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7662078 966 QVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYNVAIRNYGRLL 1030
Cdd:COG0457 181 AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
265-489 |
9.98e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.87 E-value: 9.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 265 VEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGASgn 344
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 345 slyqrnlcLHLKAEALIKLSDYdssEEAIRTLDQISDAD-NIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVH 423
Cdd:COG0457 79 --------LNNLGLALQALGRY---EEALEDYDKALELDpDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADAL 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7662078 424 ALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLD 489
Cdd:COG0457 148 YNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
566-668 |
1.46e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 1.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 566 AWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQIL 645
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98
|
90 100
....*....|....*....|...
gi 7662078 646 GKYKEAVAQYQMIIKKKEDYVPA 668
Cdd:COG4235 99 GDYAEAIAAWQKLLALLPADAPA 121
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
252-450 |
3.44e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.82 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 252 NLTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQ 331
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 332 ALKIVDNLGASgnslyqrnlcLHLKAEALIKLSDYdssEEAIRTLDQI--SDADNIPGLLVLkSLAYRNKGSFDEAAKIM 409
Cdd:COG2956 170 ALKLDPDCARA----------LLLLAELYLEQGDY---EEAIAALERAleQDPDYLPALPRL-AELYEKLGDPEEALELL 235
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 7662078 410 EDLLSSYPDLAEVHALeALIHFTKKDYLQAEKCFQRALEKD 450
Cdd:COG2956 236 RKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
818-1078 |
1.04e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 818 VRLDSNNHLYWNALGVVacYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMC 897
Cdd:COG0457 1 LELDPDDAEAYNNLGLA--YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 898 WIGQALIAEAVGSYDT-MDLFRHTTELNMHTEGA---LGYAYwvcttlqdksnretelyqyniLQMNAIPAAQVILNKYV 973
Cdd:COG0457 79 LNNLGLALQALGRYEEaLEDYDKALELDPDDAEAlynLGLAL---------------------LELGRYDEAIEAYERAL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 974 ERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYNVAIRNYGRLLCSTGEYDKAIQAFKSTPLEVLED 1053
Cdd:COG0457 138 ELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217
|
250 260
....*....|....*....|....*
gi 7662078 1054 IIGFALALFMKGLYKESSKAYERAL 1078
Cdd:COG0457 218 ALAELLLLALALLLALRLAALALYQ 242
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
573-664 |
1.13e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 573 YYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKsFTKASELNPESIYSVFKVAAIQQILGKYKEAV 652
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 7662078 653 AQYQMIIKKKED 664
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
512-660 |
1.26e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 1.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 512 RARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAAL 591
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7662078 592 RADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIK 660
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
861-1150 |
2.11e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.13 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 861 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGSYDT-MDLFRHTTELNMHTEGA---LGYAYw 936
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRaIRIHQKLLERDPDRAEAlleLAQDY- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 937 vcttlqdksnretelyqyniLQMNAIPAAQVILNKYVERIQNYAPAFTMLGYLneHLQLKKeaanaYQRAILLLQTAEDQ 1016
Cdd:COG2956 87 --------------------LKAGLLDRAEELLEKLLELDPDDAEALRLLAEI--YEQEGD-----WEKAIEVLERLLKL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1017 DTYNVAIR-NYGRLLCSTGEYDKAIQAFKstplEVLEDIIGFALALFMKGLYKESSKAYERALS----IVESEQDKAHIL 1091
Cdd:COG2956 140 GPENAHAYcELAELYLEQGDYDEAIEALE----KALKLDPDCARALLLLAELYLEQGDYEEAIAalerALEQDPDYLPAL 215
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 7662078 1092 TALAITEYKQGKTDVAKTLLFKCsILKEPTTESLQALCALGLAMQDATLSKAALNELLK 1150
Cdd:COG2956 216 PRLAELYEKLGDPEEALELLRKA-LELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
803-1078 |
2.86e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.74 E-value: 2.86e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 803 LKELLEKSLHCLKKAVRLDSNNHLYWNALGvvACYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHE 882
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEAHLALG--NLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 883 AFKMAQSLDPSYLMCWIGQALIAEAVGSYD----TMDLFRHTTELNMHTEGALGYAYwvcttlqdksnretelyqyniLQ 958
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEkaieVLERLLKLGPENAHAYCELAELY---------------------LE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 959 MNAIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAIlllqtaEDQDTYNVAIRNYGRLLCSTGEYDK 1038
Cdd:COG2956 157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERAL------EQDPDYLPALPRLAELYEKLGDPEE 230
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 7662078 1039 AIQAFKSTPLEVLEDIIGFALA--LFMKGLYKESSKAYERAL 1078
Cdd:COG2956 231 ALELLRKALELDPSDDLLLALAdlLERKEGLEAALALLERQL 272
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
290-429 |
3.34e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 3.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 290 DAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIvdnlgASGNSLYQRNLclhlkAEALIKLSDYDSS 369
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPDNADALLDL-----AEALLAAGDTEEA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 370 EEAIRTLDQIsDADNIPGLLVLkSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALI 429
Cdd:COG4235 71 EELLERALAL-DPDNPEALYLL-GLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
570-674 |
3.59e-09 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 61.64 E-value: 3.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 570 RGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIY-----SVFKV----AA 640
Cdd:PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNrdkweSLLKVnrywLL 354
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 7662078 641 IQQ-----ILGKYKEAVAQYQMI--IKKKEDYvpALKGLGE 674
Cdd:PRK11447 355 IQQgdaalKANNLAQAERLYQQArqVDNTDSY--AVLGLGD 393
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
574-661 |
4.27e-09 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 55.77 E-value: 4.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 574 YLKAGQHSQAVADLQAALRADPKDF---NCWESLGEAYLSRGGYTTALKSFTKASELNPESIY---SVFKVAAIQQILGK 647
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|....
gi 7662078 648 YKEAVAQYQMIIKK 661
Cdd:COG1729 83 YDKARATLEELIKK 96
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
957-1150 |
7.43e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 58.12 E-value: 7.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 957 LQMNAIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLlqTAEDQDTYNvairNYGRLLCSTGEY 1036
Cdd:TIGR02521 42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLN----NYGTFLCQQGKY 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1037 DKAIQAFKS--------TPLEVLEDIIGFALALfmkGLYKESSKAYERALSIvesEQDKAHILTALAITEYKQGKTDVAK 1108
Cdd:TIGR02521 116 EQAMQQFEQaiedplypQPARSLENAGLCALKA---GDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDAR 189
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 7662078 1109 TLLFKCSILKEPTTESLQALCALGLAMQDATLSKAALNELLK 1150
Cdd:TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
566-738 |
8.01e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 60.39 E-value: 8.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 566 AWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQIL 645
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 646 GKYKEAVAQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALEY---FTCALQHRADVSCLWKLAGD 722
Cdd:COG3914 126 GRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE-------EAIAALRRALELdpdNAEALNNLGNALQDLGRLEE 198
|
170
....*....|....*....
gi 7662078 723 ACTCL---YAVAPSKVNVH 738
Cdd:COG3914 199 AIAAYrraLELDPDNADAH 217
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
568-1432 |
1.02e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.10 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 568 LRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGK 647
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 648 YKEAVAQYQ-MIIKKKEDY--VPALKGLGECHLMMAKAALVDYLD-------------GKAV-----DYIEKALEYFTCA 706
Cdd:TIGR02917 106 FQQVLDELPgKTLLDDEGAaeLLALRGLAYLGLGQLELAQKSYEQalaidprslyaklGLAQlalaeNRFDEARALIDEV 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 707 LQHRADVSCLWKLAGDactclyavapskvnvhvlgVLLGQKEGKQVLKKnellhlggrcYGRALKLMSTSNTwcdlgiNY 786
Cdd:TIGR02917 186 LTADPGNVDALLLKGD-------------------LLLSLGNIELALAA----------YRKAIALRPNNIA------VL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 787 YRQAQHLAETGSNmndlkELLEKSLHCLKKAVrldsNNHLYWNALGVVACYSGiGNYALAQHCFIKSIQS--EQINAVAW 864
Cdd:TIGR02917 231 LALATILIEAGEF-----EEAEKHADALLKKA----PNSPLAHYLKALVDFQK-KNYEDARETLQDALKSapEYLPALLL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 865 tnLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGSYD----TMDLFRHTTELNMHTEGALGYAYwvctt 940
Cdd:TIGR02917 301 --AGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDeaiaTLSPALGLDPDDPAALSLLGEAY----- 373
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 941 lqdksnretelyqyniLQMNAIPAAQVILNKYVERIQNYAPAFTMLGylnehlqLKKEAANAYQRAILLLQTAEDQDTyn 1020
Cdd:TIGR02917 374 ----------------LALGDFEKAAEYLAKATELDPENAAARTQLG-------ISKLSQGDPSEAIADLETAAQLDP-- 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1021 vAIRNYGRLLCST----GEYDKAIQAFKSTPLEVLEDIIGFAL---ALFMKGLYKESSKAYERALSIvesEQDKAHILTA 1093
Cdd:TIGR02917 429 -ELGRADLLLILSylrsGQFDKALAAAKKLEKKQPDNASLHNLlgaIYLGKGDLAKAREAFEKALSI---EPDFFPAAAN 504
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1094 LAITEYKQGKTDVAKTlLFKCSILKEPttESLQALCAL-GLAMQDATlSKAALNELLKHIKHKDSNYQRCLLTSAIYALQ 1172
Cdd:TIGR02917 505 LARIDIQEGNPDDAIQ-RFEKVLTIDP--KNLRAILALaGLYLRTGN-EEEAVAWLEKAAELNPQEIEPALALAQYYLGK 580
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1173 G---RSVAVQKQISKAVhsnPGDPALWSLLSRvvAQYAQRNAKGGVVAGNVAHILDSNHGkkallyTAVNQLAMGSSSAE 1249
Cdd:TIGR02917 581 GqlkKALAILNEAADAA---PDSPEAWLMLGR--AQLAAGDLNKAVSSFKKLLALQPDSA------LALLLLADAYAVMK 649
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1250 DEKNtALKTIQKAALLSPGDPAIWAGLM----AACHADDKLALVNNTQPKRIDLYL--ALLSAVSASIKD-EKFFENYNQ 1322
Cdd:TIGR02917 650 NYAK-AITSLKRALELKPDNTEAQIGLAqlllAAKRTESAKKIAKSLQKQHPKAALgfELEGDLYLRQKDyPAAIQAYRK 728
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1323 SLEKWSLSQAVTGL----IDTGRISEAETLCTKNLKSNPDQPAVILLLRQvqckpLLESQKPLPDAVlEELQKTVMSNST 1398
Cdd:TIGR02917 729 ALKRAPSSQNAIKLhralLASGNTAEAVKTLEAWLKTHPNDAVLRTALAE-----LYLAQKDYDKAI-KHYQTVVKKAPD 802
|
890 900 910
....*....|....*....|....*....|....
gi 7662078 1399 SVPAWQWLAHVYQSQGMMRAAEMCyRKSLQLASQ 1432
Cdd:TIGR02917 803 NAVVLNNLAWLYLELKDPRALEYA-ERALKLAPN 835
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
13-86 |
1.05e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.05e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7662078 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
263-456 |
1.17e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.20 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 263 RLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIvdnlgAS 342
Cdd:COG2956 67 KLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-----GP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 343 GNSLYQRNLclhlkAEALIKLSDYDsseEAIRTLDQISDAD-NIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAE 421
Cdd:COG2956 142 ENAHAYCEL-----AELYLEQGDYD---EAIEALEKALKLDpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLP 213
|
170 180 190
....*....|....*....|....*....|....*
gi 7662078 422 VHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEY 456
Cdd:COG2956 214 ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
416-592 |
1.51e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.85 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 416 YPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEEtrkdkTKALTHFLKAARLDTYMGKV 495
Cdd:COG4785 69 LPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY-----DAALEDFDRALELDPDYAYA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 496 FCYLG--HYYRdvvGDKNRARGCYRKAFELDDTDAESgAAAVDLSVELEDMEMALAILTTVtqkasagtakWAWLrrgly 573
Cdd:COG4785 144 YLNRGiaLYYL---GRYELAIADLEKALELDPNDPER-ALWLYLAERKLDPEKALALLLED----------WATA----- 204
|
170
....*....|....*....
gi 7662078 574 YLKAGQHSQAVADLQAALR 592
Cdd:COG4785 205 YLLQGDTEEARELFKLALA 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
404-529 |
1.63e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 404 EAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFL 483
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-----DTEEAEELLE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 7662078 484 KAARLDTYMGKVFCYLGHYYRDVvGDKNRARGCYRKAFELDDTDAE 529
Cdd:COG4235 76 RALALDPDNPEALYLLGLAAFQQ-GDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
420-631 |
2.28e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 420 AEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMgeetrkdktkalthflkaarldtymgkvfcyl 499
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-------------------------------- 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 500 ghyyrdvvGDKNRARGCYRKAFELDDTDAEsgaaavdlsveledmemalailttvtqkasagtakwAWLRRGLYYLKAGQ 579
Cdd:COG4783 52 --------GDLDEAIVLLHEALELDPDEPE------------------------------------ARLNLGLALLKAGD 87
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 7662078 580 HSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPES 631
Cdd:COG4783 88 YDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
781-1007 |
2.83e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.47 E-value: 2.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 781 DLGINYYRQAQHLAETGsnmndlkeLLEKSLHCLKKAVRLDSNNHLYWNALGVVacYSGIGNYALAQHCFIKSIQSEQIN 860
Cdd:COG3914 76 LLAALLELAALLLQALG--------RYEEALALYRRALALNPDNAEALFNLGNL--LLALGRLEEALAALRRALALNPDF 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 861 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSY--LMCWIGQAL-----IAEAVGSYdtmdlfRHTTELNMHTEGALGy 933
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNaeALNNLGNALqdlgrLEEAIAAY------RRALELDPDNADAHS- 218
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7662078 934 aywvcttlqdksnreteLYQYNILQMNAIPAAQVILN--KYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAI 1007
Cdd:COG3914 219 -----------------NLLFALRQACDWEVYDRFEEllAALARGPSELSPFALLYLPDDDPAELLALARAWAQLV 277
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
13-146 |
3.92e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.28 E-value: 3.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHIna 92
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP-- 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 7662078 93 kDDLPGVYQKLLDLYESVDKQKWcdvckkLVDLYYQEKKHLEVARTWHKLIKTR 146
Cdd:COG2956 229 -EEALELLRKALELDPSDDLLLA------LADLLERKEGLEAALALLERQLRRH 275
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
10-87 |
1.28e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 55.33 E-value: 1.28e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7662078 10 LKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDqllawqglaNLYEKY 87
Cdd:cd24142 4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD---------GGYEKY 72
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
811-912 |
1.56e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.93 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 811 LHCLKKAVRLDSNNHLYWNALGVVacYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSL 890
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRA--YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|..
gi 7662078 891 DPSYLMCWIGQALIAEAVGSYD 912
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA 102
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
371-489 |
2.66e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 371 EAIRTLDQI--SDADNIPGLLVLkSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALE 448
Cdd:COG4235 1 EAIARLRQAlaANPNDAEGWLLL-GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 7662078 449 KDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLD 489
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQG-----DYAEAIAAWQKLLALL 115
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-90 |
3.27e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 55.00 E-value: 3.27e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7662078 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHI 90
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
512-644 |
4.03e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 4.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 512 RARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAkwAWLRRGLYYLKAGQHSQAVADLQAAL 591
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD--ALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 7662078 592 RADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQI 644
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
305-452 |
4.06e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 305 CTSGWYHLAEAQVKMHRPKEAVLSCSQALKIV-DNLGAsgnslyqrnlcLHLKAEALIKLSDYDsseEAIRTLDQISDAD 383
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDpDNPEA-----------FALLGEILLQLGDLD---EAIVLLHEALELD 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 384 -NIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTE 452
Cdd:COG4783 69 pDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
265-627 |
5.23e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 54.22 E-value: 5.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 265 VEMDSKSGPGLIGLGIKALQDKK---YEDAVRNLTEGLKESPVctsgwyhlaeaqvkmhRPKEAVlscsqalkivdnlga 341
Cdd:TIGR00990 284 NELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDLGKL----------------GEKEAI--------------- 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 342 sgnSLYQRNLCLHLKAEALIKLSDYDSSEEAIRTLDQIsdadnipglLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAE 421
Cdd:TIGR00990 333 ---ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS---------YIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 422 VHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKT--KALTHFLKAArlDTYmgkvfcyl 499
Cdd:TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATfrRCKKNFPEAP--DVY-------- 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 500 gHYYRDVVGDKNRargcYRKAFELDDTdaesgaaAVDLSVELEDMEMALAILTtvtqkaSAGTAKWAWLRrglyylkagQ 579
Cdd:TIGR00990 471 -NYYGELLLDQNK----FDEAIEKFDT-------AIELEKETKPMYMNVLPLI------NKALALFQWKQ---------D 523
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 7662078 580 HSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASEL 627
Cdd:TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
18-86 |
6.66e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 6.66e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7662078 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
24-84 |
7.32e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.00 E-value: 7.32e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7662078 24 EALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLY 84
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
806-994 |
9.20e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.42 E-value: 9.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 806 LLEKSLHCLKKAVRLDSNNHLYWNALGvvACYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFK 885
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLA--EIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 886 MAQSLDPSYLMCWIGQALIAEAVGSYDT-MDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYniLQMNAIPA 964
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEaIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA--LELDPSDD 246
|
170 180 190
....*....|....*....|....*....|
gi 7662078 965 AQVILNKYVERIQNYAPAftmLGYLNEHLQ 994
Cdd:COG2956 247 LLLALADLLERKEGLEAA---LALLERQLR 273
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
861-1123 |
9.81e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.46 E-value: 9.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 861 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGSYDtmdLFRHTTELNMHTEGALGYAYWvctT 940
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALA---EAAAAALLALAAGEAAAAAAA---L 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 941 LQDKSNRETELYQYniLQMNAIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLlqtaedQDTYN 1020
Cdd:COG3914 75 LLLAALLELAALLL--QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL------NPDFA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1021 VAIRNYGRLLCSTGEYDKAI----QAFKSTPlEVLEDIIGFALALFMKGLYKESSKAYERALSIvESEQDKAHILTALAI 1096
Cdd:COG3914 147 EAYLNLGEALRRLGRLEEAIaalrRALELDP-DNAEALNNLGNALQDLGRLEEAIAAYRRALEL-DPDNADAHSNLLFAL 224
|
250 260
....*....|....*....|....*..
gi 7662078 1097 teYKQGKTDVAKTLLFKCSILKEPTTE 1123
Cdd:COG3914 225 --RQACDWEVYDRFEELLAALARGPSE 249
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
13-86 |
9.89e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.46 E-value: 9.89e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7662078 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-413 |
1.68e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.65 E-value: 1.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 43 WVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHInakDDLPGVYQKLLDLYESVDkqkwcDVCKKL 122
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY---DRAIRIHQKLLERDPDRA-----EALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 123 VDLYYQEKKHLEVARTWHKLIKTRqeqgAENEELHQLwrkltqfLAESTEDQNNetqqllftaFENALglsdkipsedhq 202
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELD----PDDAEALRL-------LAEIYEQEGD---------WEKAI------------ 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 203 vlyrhfiqslskfphESARlkkacegminiyptvqyplevlclhliesgnltdegqqyccRLVEMDSKSGPGLIGLGIKA 282
Cdd:COG2956 131 ---------------EVLE-----------------------------------------RLLKLGPENAHAYCELAELY 154
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 283 LQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGASGNSLyqrnlclhlkAEALIK 362
Cdd:COG2956 155 LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL----------AELYEK 224
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 7662078 363 LSDYDsseEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLL 413
Cdd:COG2956 225 LGDPE---EALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
394-487 |
1.95e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.06 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 394 LAYRNKGSFDEAAKIMEDLLSSYPD---LAEVHALEALIHFTKKDYLQAEKCFQRALE---KDTEVAEYHYQLGLTYWFM 467
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLEL 80
|
90 100
....*....|....*....|
gi 7662078 468 GeetrkDKTKALTHFLKAAR 487
Cdd:COG1729 81 G-----DYDKARATLEELIK 95
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
275-418 |
2.10e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 275 LIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIvdnlgASGNSLYQRNLclh 354
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-----DPDEPEARLNL--- 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7662078 355 lkAEALIKLSDYDsseEAIRTLDQISDAD-NIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPD 418
Cdd:COG4783 79 --GLALLKAGDYD---EALALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
15-529 |
2.14e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.78 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 15 DAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHINAKD 94
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 95 DLpgvYQKLLDLYesvdkqkwcdvckklvdlyyqeKKHLEVARtwhKLIKTRQEQGAENEELhqlwRKLTQFLAESTedq 174
Cdd:TIGR02917 520 QR---FEKVLTID----------------------PKNLRAIL---ALAGLYLRTGNEEEAV----AWLEKAAELNP--- 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 175 nnetqqllfTAFENALGLSdkipsedhqvlyRHFIqslskfphESARLKKA---CEGMINIYPTVQYPLEVLCLHLIESG 251
Cdd:TIGR02917 565 ---------QEIEPALALA------------QYYL--------GKGQLKKAlaiLNEAADAAPDSPEAWLMLGRAQLAAG 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 252 NLTDEGQQYcCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPvctsgwyHLAEAQVKMHRpkeavlscsq 331
Cdd:TIGR02917 616 DLNKAVSSF-KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-------DNTEAQIGLAQ---------- 677
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 332 aLKIVDNLGASGNSLYQRNLCLHLKAEALIKL--------SDYDSSEEAIRTLDQISDADnipGLLVLKSLAYRNKGSFD 403
Cdd:TIGR02917 678 -LLLAAKRTESAKKIAKSLQKQHPKAALGFELegdlylrqKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTA 753
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 404 EAAKIMEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGltyWFMGEetrKDKTKALTHFL 483
Cdd:TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLA---WLYLE---LKDPRALEYAE 827
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 7662078 484 KA--------ARLDTYmGKVfcYLGhyyrdvVGDKNRARGCYRKAFELDDTDAE 529
Cdd:TIGR02917 828 RAlklapnipAILDTL-GWL--LVE------KGEADRALPLLRKAVNIAPEAAA 872
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
20-86 |
3.86e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 3.86e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 20 KEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG0457 56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE 122
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
357-489 |
6.01e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 6.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 357 AEALIKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALIHFTKKDY 436
Cdd:COG5010 25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 7662078 437 LQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLD 489
Cdd:COG5010 105 DEAKEYYEKALALSPDNPNAYSNLAALLLSLG-----QDDEAKAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
807-892 |
6.30e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 807 LEKSLHCLKKAVRLDSNNHLYWNALGVvaCYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKM 886
Cdd:COG5010 70 FEESLALLEQALQLDPNNPELYYNLAL--LYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*.
gi 7662078 887 AQSLDP 892
Cdd:COG5010 148 ALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1336-1432 |
7.13e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 50.76 E-value: 7.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1336 LIDTGRISEAETLCTKNLKSNPDQPAVILLLRQVqckplLESQKPLPDAvLEELQKTVMSNSTSVPAWQWLAHVYQSQGM 1415
Cdd:COG3914 122 LLALGRLEEALAALRRALALNPDFAEAYLNLGEA-----LRRLGRLEEA-IAALRRALELDPDNAEALNNLGNALQDLGR 195
|
90
....*....|....*..
gi 7662078 1416 MRAAEMCYRKSLQLASQ 1432
Cdd:COG3914 196 LEEAIAAYRRALELDPD 212
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
541-661 |
7.62e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 50.75 E-value: 7.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 541 LEDMEMALAILTTVTQkasagtakwAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKS 620
Cdd:TIGR00990 351 LADLSKSIELDPRVTQ---------SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 7662078 621 FTKASELNPESIYSVFKVAAIQQILGKYKEAVAQYQMIIKK 661
Cdd:TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
807-895 |
7.69e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.93 E-value: 7.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 807 LEKSLHCLKKAVRLDSNNHLYWNALGVVacYSGIGNYALAQHcFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKM 886
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLL--LLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
....*....
gi 7662078 887 AQSLDPSYL 895
Cdd:COG3063 85 ALELDPSAL 93
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
429-524 |
8.81e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 8.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 429 IHFTKKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGeetrkDKTKALThFLKAARLDTYMGKVFCYLGHYYRDvVG 508
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-----RYDEAIA-LEKALKLDPNNAEALLNLAELLLE-LG 73
|
90
....*....|....*.
gi 7662078 509 DKNRARGCYRKAFELD 524
Cdd:COG3063 74 DYDEALAYLERALELD 89
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
16-86 |
8.99e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 8.99e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7662078 16 AIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQsAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLE 71
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
13-334 |
9.40e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 9.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHIN- 91
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDr 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 92 AKDdlpgVYQKLLDLYESVDkqkwcDVCKKLVDLYYQEKKhlevartWHKLIKTRQEQGAENEELHQLWRKltqfLAEST 171
Cdd:COG2956 95 AEE----LLEKLLELDPDDA-----EALRLLAEIYEQEGD-------WEKAIEVLERLLKLGPENAHAYCE----LAELY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 172 EDQNNetqqllftaFENALglsdkipsedhqvlyrhfiqslskfphesARLKKAcegmINIYPTVQYPLEVLCLHLIESG 251
Cdd:COG2956 155 LEQGD---------YDEAI-----------------------------EALEKA----LKLDPDCARALLLLAELYLEQG 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 252 NlTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPvCTSGWYHLAEAQVKMHRPKEAVLSCSQ 331
Cdd:COG2956 193 D-YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLER 270
|
...
gi 7662078 332 ALK 334
Cdd:COG2956 271 QLR 273
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
552-702 |
1.11e-05 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 48.49 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 552 TTVTQKASAGTAKwAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPES 631
Cdd:TIGR02521 20 RSSRTTDRNKAAK-IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7662078 632 --IYSVFKVAAIQQilGKYKEAVAQYQMIIKKKEDYVPA--LKGLGECHLMMAKAAlvdyldgKAVDYIEKALEY 702
Cdd:TIGR02521 99 gdVLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPArsLENAGLCALKAGDFD-------KAEKYLTRALQI 164
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
18-86 |
1.12e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 1.12e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7662078 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG5010 66 KLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
237-412 |
1.46e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.61 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 237 QYPLEVLCLHLIESGNLTDEGQQYCcRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQ 316
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYR-RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 317 VKMHRPKEAVLSCSQALKIvdnlgASGNSLYQRNLCLhlkaeALIKLSDYDsseEAIRTLDQISDADniPGLLVLKSL-- 394
Cdd:COG3914 157 RRLGRLEEAIAALRRALEL-----DPDNAEALNNLGN-----ALQDLGRLE---EAIAAYRRALELD--PDNADAHSNll 221
|
170
....*....|....*....
gi 7662078 395 -AYRNKGSFDEAAKIMEDL 412
Cdd:COG3914 222 fALRQACDWEVYDRFEELL 240
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
432-529 |
2.47e-05 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 47.62 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 432 TKKDYLQAEKCFQRALEKDteVAEYHYQLGLTYWFmGEETRKDKTKALTHFLKAARLDTYMGKVfcYLGHYYRDVVG--- 508
Cdd:COG0790 115 VPQDYAKALEWYEKAAEQG--DADAQYNLGLLYLN-GEGVPKDPAKAAEWYRKAAEQGDADAQY--NLGVLYENGRGvpk 189
|
90 100
....*....|....*....|.
gi 7662078 509 DKNRARGCYRKAFELDDTDAE 529
Cdd:COG0790 190 DPAKALEWYRKAAEQGDADAQ 210
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
607-701 |
2.87e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 607 AYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEAVaQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvd 686
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....*
gi 7662078 687 yldgKAVDYIEKALE 701
Cdd:COG3063 77 ----EALAYLERALE 87
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
793-907 |
2.94e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 793 LAETGSNMNDLkellEKSLHCLKKAVRLDSNNHLYWNALGVVACYSGigNYALAQHCFIKSIQSEQINAVAWTNLGVLYL 872
Cdd:COG4235 23 LGRAYLRLGRY----DEALAAYEKALRLDPDNADALLDLAEALLAAG--DTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100 110
....*....|....*....|....*....|....*
gi 7662078 873 TNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEA 907
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
517-629 |
3.03e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 517 YRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGTAkwAWLRRGLYYLKAGQHSQAVADLQAALRADPK 596
Cdd:COG5010 43 AAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE--LYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
90 100 110
....*....|....*....|....*....|...
gi 7662078 597 DFNCWESLGEAYLSRGGYTTALKSFTKASELNP 629
Cdd:COG5010 121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
788-912 |
3.28e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 788 RQAQHLAETGSNMNDLKELLEKslhcLKKAVRLDSNNHLYWNALGVVacYSGIGNYALAQHCFIKSIQSEQINAVAWTNL 867
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEAL----LEKALELDPDNPEAFALLGEI--LLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 7662078 868 GVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGSYD 912
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
574-702 |
3.40e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 47.62 E-value: 3.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 574 YLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVF----------------- 636
Cdd:cd24142 10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYlylgqlsggeealqyye 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7662078 637 -KVAAIQQILGKYKEAVAQYQMIIK-KKEDYVPALKGLGEchLMMAKAALVDYLDGKAVDYIEKALEY 702
Cdd:cd24142 90 kGIEILEEELQALQAASAEAEEEAEeLKRKLSSALCALAE--IYMTDLCDEPDAEQRCEELITKALEL 155
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
263-440 |
4.75e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 46.54 E-value: 4.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 263 RLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGAS 342
Cdd:COG0457 33 KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 343 gnslyqrnlcLHLKAEALIKLSDYdssEEAIRTLDQISDAD-NIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAE 421
Cdd:COG0457 113 ----------LYNLGLALLELGRY---DEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
170
....*....|....*....
gi 7662078 422 VHALEALIHFTKKDYLQAE 440
Cdd:COG0457 180 AAALGEAALALAAAEVLLA 198
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
793-894 |
5.66e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 793 LAETGSNMNDLKELLEkslhCLKKAVRLDSNNHLYWNALGVVacYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYL 872
Cdd:COG4783 44 LGEILLQLGDLDEAIV----LLHEALELDPDEPEARLNLGLA--LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
|
90 100
....*....|....*....|..
gi 7662078 873 TNENIEQAHEAFKMAQSLDPSY 894
Cdd:COG4783 118 ALGRPDEAIAALEKALELDPDD 139
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
571-672 |
6.43e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 47.77 E-value: 6.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 571 GLYYLKAGQHSQAVADLQAALRADPKDFNC--WESL------------GEAYLSRGGYTTALKSFTKASELNPESIYSVF 636
Cdd:PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPHSSNRdkWESLlkvnrywlliqqGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389
|
90 100 110
....*....|....*....|....*....|....*.
gi 7662078 637 KVAAIQQILGKYKEAVAQYQMIIKKKEDYVPALKGL 672
Cdd:PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1003-1205 |
6.46e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 6.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1003 YQRAILLLQTAEDQDTYNVAIRNY-GRLLCSTGEYDKAIQAFKstplEVLEDIIGFALALFMKGLYKESSKAYERALSIV 1081
Cdd:COG2956 58 YDRAIRIHQKLLERDPDRAEALLElAQDYLKAGLLDRAEELLE----KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1082 E----SEQDKAHILTALAITEYKQGKTDVAKTLLFKcSILKEPttESLQALCALGLAMQDATLSKAALnELLKHIKHKDS 1157
Cdd:COG2956 134 ErllkLGPENAHAYCELAELYLEQGDYDEAIEALEK-ALKLDP--DCARALLLLAELYLEQGDYEEAI-AALERALEQDP 209
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 7662078 1158 NYQRCLLT-SAIYALQGRSVAVQKQISKAVHSNPGDPALWSLLSRVVAQ 1205
Cdd:COG2956 210 DYLPALPRlAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERK 258
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1027-1202 |
6.88e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 6.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1027 GRLLCSTGEYDKAIQAFKstplEVLEDIIGFALALFMKGLYKESSKAYERALSI----VESEQDKAHILTALAITEYKQG 1102
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLE----EALELDPETVEAHLALGNLYRRRGEYDRAIRIhqklLERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1103 KTDVAKTLLFKcsiLKEPTTESLQALCALGLAMQDATLSKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVAVQKQI 1182
Cdd:COG2956 91 LLDRAEELLEK---LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167
|
170 180
....*....|....*....|
gi 7662078 1183 SKAVHSNPGDPALWSLLSRV 1202
Cdd:COG2956 168 EKALKLDPDCARALLLLAEL 187
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
432-528 |
7.23e-05 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 46.07 E-value: 7.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 432 TKKDYLQAEKCFQRALEKDteVAEYHYQLGLTYWFmGEETRKDKTKALTHFLKAARLDtyMGKVFCYLGHYYRD---VVG 508
Cdd:COG0790 79 VPKDYEKALEWFEKAAEQG--DAEAQYNLGLMYEE-GLGVPQDYAKALEWYEKAAEQG--DADAQYNLGLLYLNgegVPK 153
|
90 100
....*....|....*....|
gi 7662078 509 DKNRARGCYRKAFELDDTDA 528
Cdd:COG0790 154 DPAKAAEWYRKAAEQGDADA 173
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
13-106 |
8.72e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 8.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLY-EKYNHIN 91
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAfQQGDYAE 103
|
90
....*....|....*
gi 7662078 92 AKDDlpgvYQKLLDL 106
Cdd:COG4235 104 AIAA----WQKLLAL 114
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
836-912 |
1.30e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.30e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 836 CYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAhEAFKMAQSLDPSYLMCWIGQALIAEAVGSYD 912
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYD 76
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-144 |
2.06e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.11 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 3 SKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLAN 82
Cdd:COG2956 39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7662078 83 LYEKY-NHINAKDdlpgVYQKLLDLYESvDKQKWCdvckKLVDLYYQEKKHLEVARTWHKLIK 144
Cdd:COG2956 119 IYEQEgDWEKAIE----VLERLLKLGPE-NAHAYC----ELAELYLEQGDYDEAIEALEKALK 172
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
957-1080 |
2.23e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 957 LQMNAIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDqdtynvAIRNYGRLLCSTGEY 1036
Cdd:COG4783 15 LLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------ARLNLGLALLKAGDY 88
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 7662078 1037 DKAIQAF----KSTPlEVLEDIIGFALALFMKGLYKESSKAYERALSI 1080
Cdd:COG4783 89 DEALALLekalKLDP-EHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
17-72 |
2.49e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 2.49e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 7662078 17 IRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPD 72
Cdd:COG4235 62 LAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| PRK10370 |
PRK10370 |
formate-dependent nitrite reductase complex subunit NrfG; Provisional |
544-634 |
2.60e-04 |
|
formate-dependent nitrite reductase complex subunit NrfG; Provisional
Pssm-ID: 182415 [Multi-domain] Cd Length: 198 Bit Score: 43.74 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 544 MEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQA-VADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFT 622
Cdd:PRK10370 18 MVFLCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAqLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYR 97
|
90
....*....|....
gi 7662078 623 KASELNPES--IYS 634
Cdd:PRK10370 98 QALQLRGENaeLYA 111
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
835-912 |
2.75e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.03 E-value: 2.75e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7662078 835 ACYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGSYD 912
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
17-73 |
2.83e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 2.83e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 17 IRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQ 73
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
568-631 |
4.23e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.01 E-value: 4.23e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 568 LRRGLYYLKAGQHSQAVADLQAALRAD---PKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPES 631
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
282-525 |
4.90e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 44.13 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 282 ALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPkEAVLSCSQALKIVDNLGASGNSLYQRNLCLHLKAEALi 361
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDW-EELLELLPALRKHKALSAEEAQALERRAYLGLLRQAA- 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 362 klsdyDSSEEAIRTLDQISDAD-NIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEVHALEALihfTKKDYLQAE 440
Cdd:COG3071 173 -----RDAEALKALWKALPRAErRDPELAAAYARALIALGDHDEAERLLREALKRQWDPRLVRLYGRL---QGGDPAKQL 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 441 KCFQRALEKDTEVAEYHYQLGLTYWfmgeeTRKDKTKALTHFLKAARL----DTYMgkvfcYLGHYYrDVVGDKNRARGC 516
Cdd:COG3071 245 KRAEKWLKKHPNDPDLLLALGRLCL-----RNQLWGKAREYLEAALALrpsaEAYA-----ELARLL-EQLGDPEEAAEH 313
|
....*....
gi 7662078 517 YRKAFELDD 525
Cdd:COG3071 314 YRKALALAL 322
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
517-666 |
5.69e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.59 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 517 YRKAFELD-DTDAESGAAAVDLSVELEDMEMALAIlttvtqkasagtakwAWLRRGLYYLKAGQHSQAVADLQAALRADP 595
Cdd:TIGR00990 298 GLKSPESKaDESYEEAARAFEKALDLGKLGEKEAI---------------ALNLRGTFKCLKGKHLEALADLSKSIELDP 362
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7662078 596 KDFNCWESLGEAYLSRGGYTTALKSFTKASELNPE--SIYsvFKVAAIQQILGKYKEAVAQYQMIIKKKEDYV 666
Cdd:TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEdpDIY--YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
370-450 |
5.85e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 370 EEAIRTLDQISDAD-NIPGLLVLKSLAYRNKGSFDEAAKImEDLLSSYPDLAEVHALEALIHFTKKDYLQAEKCFQRALE 448
Cdd:COG3063 9 EEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALE 87
|
..
gi 7662078 449 KD 450
Cdd:COG3063 88 LD 89
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
263-454 |
9.03e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 9.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 263 RLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLKESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIVDNLGAS 342
Cdd:COG0457 67 QALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 343 GNSLyqrnlclhlkAEALIKLSDYDsseEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLAEV 422
Cdd:COG0457 147 LYNL----------GIALEKLGRYE---EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAI 213
|
170 180 190
....*....|....*....|....*....|..
gi 7662078 423 HALEALIHFTKKDYLQAEKCFQRALEKDTEVA 454
Cdd:COG0457 214 LTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
33-86 |
1.05e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 1.05e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 7662078 33 LKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEK 86
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR 54
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
861-894 |
1.18e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 1.18e-03
10 20 30
....*....|....*....|....*....|....
gi 7662078 861 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSY 894
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-105 |
1.21e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.44 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHINAKDDLP 97
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE 237
|
....*...
gi 7662078 98 GVYQKLLD 105
Cdd:COG3914 238 ELLAALAR 245
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
19-83 |
1.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.72 E-value: 1.28e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7662078 19 NKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANL 83
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
14-107 |
1.45e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 14 RDAIRNKEYKEALKHCKTVLKQEKNNY---NAWVFIGVAAAELEQPDQAQSAYKKAAELEPDQLLAWQGLANLYEKYNHI 90
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLEL 80
|
90
....*....|....*..
gi 7662078 91 NAKDDLPGVYQKLLDLY 107
Cdd:COG1729 81 GDYDKARATLEELIKKY 97
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
861-1128 |
1.49e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.05 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 861 AVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEAVGsydtmdlfrHTTELNMHTEGALgyaywvctt 940
Cdd:TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG---------DPDKAEEDFDKAL--------- 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 941 lqdKSNRETELYQYNILQMNaipaaqVILNKYVERIQNYAPAFTM-LGYLNEHLQLkkeAANAYQrailLLQTAEDQDTY 1019
Cdd:TIGR00990 393 ---KLNSEDPDIYYHRAQLH------FIKGEFAQAGKDYQKSIDLdPDFIFSHIQL---GVTQYK----EGSIASSMATF 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1020 NVAIRN----------YGRLLCSTGEYDKAIQAF--------KSTPLEV-LEDIIGFALALFM-KGLYKESSKAYERALs 1079
Cdd:TIGR00990 457 RRCKKNfpeapdvynyYGELLLDQNKFDEAIEKFdtaielekETKPMYMnVLPLINKALALFQwKQDFIEAENLCEKAL- 535
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 7662078 1080 IVESEQDKAHIltALAITEYKQGKTDVAKTLLFKCSILKEPTTESLQAL 1128
Cdd:TIGR00990 536 IIDPECDIAVA--TMAQLLLQQGDVDEALKLFERAAELARTEGELVQAI 582
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
566-627 |
1.52e-03 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 40.75 E-value: 1.52e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7662078 566 AWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASEL 627
Cdd:smart01043 63 ALEALAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
572-701 |
1.63e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 40.71 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 572 LYYLKAGQHSQAVADLQAALRADPKDFNCWESLGEAYLSRGGYTTALKSFTKASELNPESIYSVFKVAAIQQILGKYKEA 651
Cdd:COG5010 28 EAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEA 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 7662078 652 VAQYQMIIKKKEDYVPALKGLGECHLMMAKAAlvdyldgKAVDYIEKALE 701
Cdd:COG5010 108 KEYYEKALALSPDNPNAYSNLAALLLSLGQDD-------EAKAALQRALG 150
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
969-1095 |
4.18e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 969 LNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLqtAEDQDtynvAIRNYGRLLCSTGEYDKAIQAFKstpl 1048
Cdd:COG4235 6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--PDNAD----ALLDLAEALLAAGDTEEAEELLE---- 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 7662078 1049 EVLE------DIIGF-ALALFMKGLYKESSKAYERALSIVESEQDKAHILTALA 1095
Cdd:COG4235 76 RALAldpdnpEALYLlGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
841-911 |
5.68e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.69 E-value: 5.68e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7662078 841 GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPS-----YLmcWIGQALI-AEAVGSY 911
Cdd:cd24142 14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekYL--YLGQLSGgEEALQYY 88
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
565-597 |
5.94e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 5.94e-03
10 20 30
....*....|....*....|....*....|...
gi 7662078 565 WAWLRRGLYYLKAGQHSQAVADLQAALRADPKD 597
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
997-1080 |
6.85e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.46 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 997 KEAANAYQRAILLlqTAEDQDTYNvairNYGRLLCSTGEYDKAIQAFKSTPLEVLEDIIGFALA--LFMKGLYKESSKAY 1074
Cdd:COG3063 9 EEAEEYYEKALEL--DPDNADALN----NLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAelLLELGDYDEALAYL 82
|
....*.
gi 7662078 1075 ERALSI 1080
Cdd:COG3063 83 ERALEL 88
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
532-609 |
7.58e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 40.03 E-value: 7.58e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7662078 532 AAAVDLSVELEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDfncwESLGEAYL 609
Cdd:pfam13429 113 YSALYLYERAGDYDRLARLLASLEELPAAEQSPAFWLARAEYYRQTGEPDAALRDYRRALALAPAS----TELRAALL 186
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
359-449 |
7.91e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 359 ALIKLSDYDSSEEAIRT-LDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPD---LAEVHALEALIHFTKK 434
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAfLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81
|
90
....*....|....*
gi 7662078 435 DYLQAEKCFQRALEK 449
Cdd:COG1729 82 DYDKARATLEELIKK 96
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1058-1205 |
8.20e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 8.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 1058 ALALFMKGLYKESSKAYERALSIvesEQDKAHILTALAITEYKQGKTDVAKTLLFKcSILKEPttESLQALCALGLAMQD 1137
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALEL---DPDDAEALYNLGLAYLRLGRYEEALADYEQ-ALELDP--DDAEALNNLGLALQA 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7662078 1138 ATLSKAALNELLKHIKHKDSNYQRCLLTSAIYALQGRSVAVQKQISKAVHSNPGDPALWSLLSRVVAQ 1205
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
828-912 |
9.43e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.51 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 828 WNALGVVacYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIGQALIAEA 907
Cdd:COG4785 76 YYERGVA--YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
....*
gi 7662078 908 VGSYD 912
Cdd:COG4785 154 LGRYE 158
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
508-596 |
9.54e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662078 508 GDKNRARGCYRKAFELDDTDAESGAAAVDLSVELEDMEMALAILTTVTQKASAGtakWAWLRRGLYYLKAGQHSQAVADL 587
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNA---EALLNLAELLLELGDYDEALAYL 82
|
....*....
gi 7662078 588 QAALRADPK 596
Cdd:COG3063 83 ERALELDPS 91
|
|
| |
