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Conserved domains on  [gi|7662302|ref|NP_055541|]
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TANK-binding kinase 1-binding protein 1 [Homo sapiens]

Protein Classification

TBD domain-containing protein( domain architecture ID 10582370)

TBD domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TBD super family cl15118
TBD domain; The Tbk1/Ikki binding domain (TBD) is a 40 amino acid domain able to bind kinases, ...
 288-342 1.47e-15

TBD domain; The Tbk1/Ikki binding domain (TBD) is a 40 amino acid domain able to bind kinases, has been found to be essential for poly(I:C)-induced IRF activation. The domain is found in SINTBAD, TANK and NAP1 protein. This domain is predicted to form an a-helix with residues essential for kinase binding clustering on one side.


The actual alignment was detected with superfamily member pfam12845:

Pssm-ID: 463729 [Multi-domain]  Cd Length: 56  Bit Score: 70.93  E-value: 1.47e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 7662302    288 GDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQARSGG-QRHSPLSQRHS 342
Cdd:pfam12845   1 GDSSVNLEKAYWELKEEMHRLCMLTRVQAEHLRKLKIEQETAGEiQFSMPIQCTDD 56
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 47-332 2.07e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.21  E-value: 2.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302      47 AYGDIKERLGGLEREN--ATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKD-GSLLEVEKVSLQQRLNQFQHELQKNKEQ 123
Cdd:TIGR02168  662 TGGSAKTNSSILERRReiEELEEKIEELEEKIAELEKALAELRKELEELEEeLEQLRKELEELSRQISALRKDLARLEAE 741

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     124 EEQLGEMIQAYEKLCVEKSDLETELREMRALVETHL-RQICGLEQQLRQQQGLQDAAFSNLSPPPAPAPPCTDLDLHYLA 202
Cdd:TIGR02168  742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     203 LRGGSGlshagwpGSTPSVSDLERR--RLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRA---QDLASNQS 277
Cdd:TIGR02168  822 LRERLE-------SLERRIAATERRleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRS 894

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 7662302     278 ERDMAWVKRVGDDQVNLAL--AYTELTEELGRLR-ELSSLQGRILRtlLQEQARSGGQ 332
Cdd:TIGR02168  895 ELEELSEELRELESKRSELrrELEELREKLAQLElRLEGLEVRIDN--LQERLSEEYS 950
 
Name Accession Description Interval E-value
TBD pfam12845
TBD domain; The Tbk1/Ikki binding domain (TBD) is a 40 amino acid domain able to bind kinases, ...
 288-342 1.47e-15

TBD domain; The Tbk1/Ikki binding domain (TBD) is a 40 amino acid domain able to bind kinases, has been found to be essential for poly(I:C)-induced IRF activation. The domain is found in SINTBAD, TANK and NAP1 protein. This domain is predicted to form an a-helix with residues essential for kinase binding clustering on one side.


Pssm-ID: 463729 [Multi-domain]  Cd Length: 56  Bit Score: 70.93  E-value: 1.47e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 7662302    288 GDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQARSGG-QRHSPLSQRHS 342
Cdd:pfam12845   1 GDSSVNLEKAYWELKEEMHRLCMLTRVQAEHLRKLKIEQETAGEiQFSMPIQCTDD 56
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 47-332 2.07e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.21  E-value: 2.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302      47 AYGDIKERLGGLEREN--ATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKD-GSLLEVEKVSLQQRLNQFQHELQKNKEQ 123
Cdd:TIGR02168  662 TGGSAKTNSSILERRReiEELEEKIEELEEKIAELEKALAELRKELEELEEeLEQLRKELEELSRQISALRKDLARLEAE 741

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     124 EEQLGEMIQAYEKLCVEKSDLETELREMRALVETHL-RQICGLEQQLRQQQGLQDAAFSNLSPPPAPAPPCTDLDLHYLA 202
Cdd:TIGR02168  742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     203 LRGGSGlshagwpGSTPSVSDLERR--RLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRA---QDLASNQS 277
Cdd:TIGR02168  822 LRERLE-------SLERRIAATERRleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRS 894

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 7662302     278 ERDMAWVKRVGDDQVNLAL--AYTELTEELGRLR-ELSSLQGRILRtlLQEQARSGGQ 332
Cdd:TIGR02168  895 ELEELSEELRELESKRSELrrELEELREKLAQLElRLEGLEVRIDN--LQERLSEEYS 950
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 221-328 1.14e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 1.14e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302  221 VSDLER--RRLEEALEAAQGEARGAQLREEQLQAECERLQGELKQL--------QETRAQDLAS----NQSERDMAWVKR 286
Cdd:COG4942  64 IAALARriRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlralyrlgRQPPLALLLSpedfLDAVRRLQYLKY 143

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 7662302  287 VGDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQAR 328
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
CusB_dom_1 pfam00529
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ...
 224-338 7.72e-04

Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 42.03  E-value: 7.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302    224 LERRRLEEALEAAQGEARGAQLREEQLQAECERLQgELKQLQETRAQDLASNQSERDMAwvkrvgDDQVNLALAYTELTE 303
Cdd:pfam00529  51 LDPTDYQAALDSAEAQLAKAQAQVARLQAELDRLQ-ALESELAISRQDYDGATAQLRAA------QAAVKAAQAQLAQAQ 123

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 7662302    304 E-LGRLRELSSLQGRILRTLLQEQARSGGQRHSPLS 338
Cdd:pfam00529 124 IdLARRRVLAPIGGISRESLVTAGALVAQAQANLLA 159
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 46-157 7.79e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 38.85  E-value: 7.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302      46 TAYGDIKERLGGLERENATLRrrlkvyEIKYPLisdfgeehgfslyEIKDGSLLEVEKVSLQQRLNQFQHELQKNKEQEE 125
Cdd:smart00787 172 SIKPKLRDRKDALEEELRQLK------QLEDEL-------------EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232

                           90       100       110
                   ....*....|....*....|....*....|..
gi 7662302     126 QLGEMIQAYEKLCVEKSDLETELREMRALVET 157
Cdd:smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
 
Name Accession Description Interval E-value
TBD pfam12845
TBD domain; The Tbk1/Ikki binding domain (TBD) is a 40 amino acid domain able to bind kinases, ...
 288-342 1.47e-15

TBD domain; The Tbk1/Ikki binding domain (TBD) is a 40 amino acid domain able to bind kinases, has been found to be essential for poly(I:C)-induced IRF activation. The domain is found in SINTBAD, TANK and NAP1 protein. This domain is predicted to form an a-helix with residues essential for kinase binding clustering on one side.


Pssm-ID: 463729 [Multi-domain]  Cd Length: 56  Bit Score: 70.93  E-value: 1.47e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 7662302    288 GDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQARSGG-QRHSPLSQRHS 342
Cdd:pfam12845   1 GDSSVNLEKAYWELKEEMHRLCMLTRVQAEHLRKLKIEQETAGEiQFSMPIQCTDD 56
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 47-332 2.07e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.21  E-value: 2.07e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302      47 AYGDIKERLGGLEREN--ATLRRRLKVYEIKYPLISDFGEEHGFSLYEIKD-GSLLEVEKVSLQQRLNQFQHELQKNKEQ 123
Cdd:TIGR02168  662 TGGSAKTNSSILERRReiEELEEKIEELEEKIAELEKALAELRKELEELEEeLEQLRKELEELSRQISALRKDLARLEAE 741

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     124 EEQLGEMIQAYEKLCVEKSDLETELREMRALVETHL-RQICGLEQQLRQQQGLQDAAFSNLSPPPAPAPPCTDLDLHYLA 202
Cdd:TIGR02168  742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     203 LRGGSGlshagwpGSTPSVSDLERR--RLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRA---QDLASNQS 277
Cdd:TIGR02168  822 LRERLE-------SLERRIAATERRleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAsleEALALLRS 894

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 7662302     278 ERDMAWVKRVGDDQVNLAL--AYTELTEELGRLR-ELSSLQGRILRtlLQEQARSGGQ 332
Cdd:TIGR02168  895 ELEELSEELRELESKRSELrrELEELREKLAQLElRLEGLEVRIDN--LQERLSEEYS 950
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 53-328 9.66e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.44  E-value: 9.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302      53 ERLGGLERENATLRRRLKvyEIkyplisdfgEEHGFSLY-EIKDgslLEVEKVSLQQRLNQFQHELQKNKEQEEQLGEMI 131
Cdd:TIGR02169  681 ERLEGLKRELSSLQSELR--RI---------ENRLDELSqELSD---ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     132 QAYEklcVEKSDLETELREMRALVETHLRQIcgleqqlrqqqGLQDAAFSNLSPPpapappctdldlhylalrggsgLSH 211
Cdd:TIGR02169  747 SSLE---QEIENVKSELKELEARIEELEEDL-----------HKLEEALNDLEAR----------------------LSH 790

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     212 AGWPGSTPSVSDLE--RRRLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRAqdlasnqSERdmawvKRVGD 289
Cdd:TIGR02169  791 SRIPEIQAELSKLEeeVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK-------SIE-----KEIEN 858

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 7662302     290 DQVNLALAYTELTEELGRLRELSS----LQGRILRtlLQEQAR 328
Cdd:TIGR02169  859 LNGKKEELEEELEELEAALRDLESrlgdLKKERDE--LEAQLR 899
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 221-328 1.14e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 44.75  E-value: 1.14e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302  221 VSDLER--RRLEEALEAAQGEARGAQLREEQLQAECERLQGELKQL--------QETRAQDLAS----NQSERDMAWVKR 286
Cdd:COG4942  64 IAALARriRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlralyrlgRQPPLALLLSpedfLDAVRRLQYLKY 143

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 7662302  287 VGDDQVNLALAYTELTEELGRLRELSSLQGRILRTLLQEQAR 328
Cdd:COG4942 144 LAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 223-340 2.98e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.89  E-value: 2.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302     223 DLERRR--LEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRA---QDLASNQSERDMAWVKRVGDDQVNLALA 297
Cdd:TIGR02168  369 ELESRLeeLEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRErlqQEIEELLKKLEEAELKELQAELEELEEE 448

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 7662302     298 YTELTEELGRLRE-LSSLQGRIlrTLLQEQARSGGQRHSPLSQR 340
Cdd:TIGR02168  449 LEELQEELERLEEaLEELREEL--EEAEQALDAAERELAQLQAR 490
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 224-328 7.13e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.62  E-value: 7.13e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302  224 LERRRLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRAQDLASNQSERdmawvKRVGDDQVNLALAYTELTE 303
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE-----EELEELEEELEELEEELEE 348

                        90       100
                ....*....|....*....|....*
gi 7662302  304 ELGRLRELSSLQGRILRTLLQEQAR 328
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAE 373
CusB_dom_1 pfam00529
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ...
 224-338 7.72e-04

Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 42.03  E-value: 7.72e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302    224 LERRRLEEALEAAQGEARGAQLREEQLQAECERLQgELKQLQETRAQDLASNQSERDMAwvkrvgDDQVNLALAYTELTE 303
Cdd:pfam00529  51 LDPTDYQAALDSAEAQLAKAQAQVARLQAELDRLQ-ALESELAISRQDYDGATAQLRAA------QAAVKAAQAQLAQAQ 123

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 7662302    304 E-LGRLRELSSLQGRILRTLLQEQARSGGQRHSPLS 338
Cdd:pfam00529 124 IdLARRRVLAPIGGISRESLVTAGALVAQAQANLLA 159
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
224-341 1.40e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302   224 LERRRLEEALEAAQGEARGAQLREEQLQAECERLQGELKQLQETRAQ-----------DLASNQSERD---------MAW 283
Cdd:COG4913  288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdrleqlerEIERLERELEererrrarlEAL 367

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 7662302   284 VKRVGDDQVNLALAYTELTEELGRLRElsslQGRILRTLLQEQARSGGQRHSPLSQRH 341
Cdd:COG4913  368 LAALGLPLPASAEEFAALRAEAAALLE----ALEEELEALEEALAEAEAALRDLRREL 421
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 223-328 7.40e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.53  E-value: 7.40e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302  223 DLERRRLEEALEAAQGEARGAQLREEQLQAecERLQGELKQLQETRAQ------DLASNQSERDMAWVKRVGDDQVNLAL 296
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEEL--EEAEEELEEAEAELAEaeeallEAEAELAEAEEELEELAEELLEALRA 394

                        90       100       110
                ....*....|....*....|....*....|..
gi 7662302  297 AYTELTEELGRLRELSSLQGRILRTLLQEQAR 328
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEEL 426
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
 46-157 7.79e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 38.85  E-value: 7.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7662302      46 TAYGDIKERLGGLERENATLRrrlkvyEIKYPLisdfgeehgfslyEIKDGSLLEVEKVSLQQRLNQFQHELQKNKEQEE 125
Cdd:smart00787 172 SIKPKLRDRKDALEEELRQLK------QLEDEL-------------EDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232

                           90       100       110
                   ....*....|....*....|....*....|..
gi 7662302     126 QLGEMIQAYEKLCVEKSDLETELREMRALVET 157
Cdd:smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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