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Conserved domains on  [gi|7661858|ref|NP_055598|]
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rho GTPase-activating protein 11A isoform 1 [Homo sapiens]

Protein Classification

Rho GTPase-activating protein( domain architecture ID 10138228)

Rho GTPase-activating protein for Rho/Rac/Cdc42-like small GTPases that act as molecular switches, active in their GTP-bound form but inactive when bound to GDP

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RhoGAP-ARHGAP11A cd04394
RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 46-246 5.76e-122

RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


:

Pssm-ID: 239859 [Multi-domain]  Cd Length: 202  Bit Score: 370.65  E-value: 5.76e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    46 IFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFF 125
Cdd:cd04394    1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLDHLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   126 RELPEPILPADLHEALLKAQQLGT-EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL 204
Cdd:cd04394   81 RELPEPLLPYDLHEALLKAQELPTdEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLF 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 7661858   205 QTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFIL 246
Cdd:cd04394  161 QSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGIVPDFIL 202
 
Name Accession Description Interval E-value
RhoGAP-ARHGAP11A cd04394
RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 46-246 5.76e-122

RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239859 [Multi-domain]  Cd Length: 202  Bit Score: 370.65  E-value: 5.76e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    46 IFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFF 125
Cdd:cd04394    1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLDHLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   126 RELPEPILPADLHEALLKAQQLGT-EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL 204
Cdd:cd04394   81 RELPEPLLPYDLHEALLKAQELPTdEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLF 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 7661858   205 QTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFIL 246
Cdd:cd04394  161 QSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGIVPDFIL 202
RhoGAP smart00324
GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac ...
 63-235 6.68e-50

GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.


Pssm-ID: 214618  Cd Length: 174  Bit Score: 173.99  E-value: 6.68e-50
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858       63 GHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEG---CLSSAPPCDIAGLLKQFFRELPEPILPADLH 138
Cdd:smart00324    1 KPIPIIVEKCIEYLEKRgLDTEGIYRVSGSKSRVKELRDAFDSGPDpdlDLSEYDVHDVAGLLKLFLRELPEPLITYELY 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858      139 EALLKAQQLGTE-EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNT 217
Cdd:smart00324   81 EEFIEAAKLEDEtERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDI 160

                           170
                    ....*....|....*...
gi 7661858      218 ekklRLQAAVVQTLIDYA 235
Cdd:smart00324  161 ----RHQNTVIEFLIENA 174
RhoGAP pfam00620
RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
 66-207 1.01e-37

RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.


Pssm-ID: 459875  Cd Length: 148  Bit Score: 138.06  E-value: 1.01e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858      66 PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGE---GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEAL 141
Cdd:pfam00620    1 PLIVRKCVEYLEKRgLDTEGIFRVSGSASRIKELREAFDRGPdvdLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEF 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7661858     142 LKAQQLGTEEKNKATLLLSC-LLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTS 207
Cdd:pfam00620   81 IEAAKLPDEEERLEALRELLrKLPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPP 147
 
Name Accession Description Interval E-value
RhoGAP-ARHGAP11A cd04394
RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 46-246 5.76e-122

RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239859 [Multi-domain]  Cd Length: 202  Bit Score: 370.65  E-value: 5.76e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    46 IFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCDIAGLLKQFF 125
Cdd:cd04394    1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLDHLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPCDVAGLLKQFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   126 RELPEPILPADLHEALLKAQQLGT-EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL 204
Cdd:cd04394   81 RELPEPLLPYDLHEALLKAQELPTdEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAPNLF 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 7661858   205 QTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFIL 246
Cdd:cd04394  161 QSEEGGEKMSSSTEKRLRLQAAVVQTLIDNASNIGIVPDFIL 202
RhoGAP smart00324
GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac ...
 63-235 6.68e-50

GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.


Pssm-ID: 214618  Cd Length: 174  Bit Score: 173.99  E-value: 6.68e-50
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858       63 GHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEG---CLSSAPPCDIAGLLKQFFRELPEPILPADLH 138
Cdd:smart00324    1 KPIPIIVEKCIEYLEKRgLDTEGIYRVSGSKSRVKELRDAFDSGPDpdlDLSEYDVHDVAGLLKLFLRELPEPLITYELY 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858      139 EALLKAQQLGTE-EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNT 217
Cdd:smart00324   81 EEFIEAAKLEDEtERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDI 160

                           170
                    ....*....|....*...
gi 7661858      218 ekklRLQAAVVQTLIDYA 235
Cdd:smart00324  161 ----RHQNTVIEFLIENA 174
RhoGAP cd00159
RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like ...
 66-234 1.12e-39

RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.


Pssm-ID: 238090 [Multi-domain]  Cd Length: 169  Bit Score: 144.75  E-value: 1.12e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    66 PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGE--GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALL 142
Cdd:cd00159    1 PLIIEKCIEYLEKNgLNTEGIFRVSGSASKIEELKKKFDRGEdiDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   143 KA-QQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKkl 221
Cdd:cd00159   81 ELaKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSDDELLEDIKK-- 158

                        170
                 ....*....|...
gi 7661858   222 rlQAAVVQTLIDY 234
Cdd:cd00159  159 --LNEIVEFLIEN 169
RhoGAP pfam00620
RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
 66-207 1.01e-37

RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.


Pssm-ID: 459875  Cd Length: 148  Bit Score: 138.06  E-value: 1.01e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858      66 PSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGE---GCLSSAPPCDIAGLLKQFFRELPEPILPADLHEAL 141
Cdd:pfam00620    1 PLIVRKCVEYLEKRgLDTEGIFRVSGSASRIKELREAFDRGPdvdLDLEEEDVHVVASLLKLFLRELPEPLLTFELYEEF 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7661858     142 LKAQQLGTEEKNKATLLLSC-LLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTS 207
Cdd:pfam00620   81 IEAAKLPDEEERLEALRELLrKLPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPP 147
RhoGAP-p50rhoGAP cd04404
RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 47-204 6.21e-32

RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239869 [Multi-domain]  Cd Length: 195  Bit Score: 123.22  E-value: 6.21e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNALPHSAvPEYGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEgclssapPCD--------- 116
Cdd:cd04404    6 FGVSLQFLKEKN-PEQEPIPPVVRETVEYLQAHaLTTEGIFRRSANTQVVKEVQQKYNMGE-------PVDfdqyedvhl 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   117 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLA 196
Cdd:cd04404   78 PAVILKTFLRELPEPLLTFDLYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLA 157


                 ....*...
gi 7661858   197 VIFAPNLL 204
Cdd:cd04404  158 VVFGPNLL 165
RhoGAP_ARHGAP6 cd04376
RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 57-242 4.67e-29

RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239841  Cd Length: 206  Bit Score: 115.62  E-value: 4.67e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    57 SAVPEYGHIPSfLVDACTS-LEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCL--SSAPPCDIAGLLKQFFRELPEPI 132
Cdd:cd04376    1 SLNPIARQVPR-LVESCCQhLEKHgLQTVGIFRVGSSKKRVRQLREEFDRGIDVVldENHSVHDVAALLKEFFRDMPDPL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   133 LPADLHEALLKAQQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRS-----------SENKMDSSNLAVIFAP 201
Cdd:cd04376   80 LPRELYTAFIGTALLEPDEQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAadsidedgqevSGNKMTSLNLATIFGP 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 7661858   202 NLLQTSEGHEKMSSNTEKKL---RLQAAVVQTLIDYASDIGRVP 242
Cdd:cd04376  160 NLLHKQKSGEREFVQASLRIeesTAIINVVQTMIDNYEELFMVS 203
RhoGAP_FAM13A1a cd04393
RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 45-233 4.47e-27

RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.


Pssm-ID: 239858 [Multi-domain]  Cd Length: 189  Bit Score: 109.09  E-value: 4.47e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    45 KIFGVPFNALPHSAVPEYGhIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSS--APPCDIAGLL 121
Cdd:cd04393    1 KVFGVPLQELQQAGQPENG-VPAVVRHIVEYLEQHgLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSkeADVCSAASLL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   122 KQFFRELPEPILPADLHEALLKAQQLGTEEK---NKATLLLSCLLADHtVHVLRYFFNFLRNVSLRSSENKMDSSNLAVI 198
Cdd:cd04393   80 RLFLQELPEGLIPASLQIRLMQLYQDYNGEDefgRKLRDLLQQLPPVN-YSLLKFLCHFLSNVASQHHENRMTAENLAAV 158

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 7661858   199 FAPNLLQTSEGHEKMssnteKKLRLQAAVVQTLID 233
Cdd:cd04393  159 FGPDVFHVYTDVEDM-----KEQEICSRIMAKLLE 188
RhoGAP_ARHGAP20 cd04402
RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 81-238 8.80e-26

RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239867  Cd Length: 192  Bit Score: 105.46  E-value: 8.80e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    81 HTEGLFRKSGSVIRLKALKNKVDHG-EGCLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL-- 157
Cdd:cd04402   32 STEGIFRRSANAKACKELKEKLNSGvEVDLKAEPVLLLASVLKDFLRNIPGSLLSSDLYEEWMSALDQENEEEKIAELqr 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   158 LLSCLLADHTVhVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLqaavVQTLIDYASD 237
Cdd:cd04402  112 LLDKLPRPNVL-LLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQNEDLKKVTSL----VQFLIENCQE 186


                 .
gi 7661858   238 I 238
Cdd:cd04402  187 I 187
RhoGAP_fLRG1 cd04397
RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 47-245 8.92e-24

RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239862  Cd Length: 213  Bit Score: 100.52  E-value: 8.92e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNAL--------PHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVD-HGEGC--LSSAPP 114
Cdd:cd04397    1 FGVPLEILvekfgadsTLGVGPGKLRIPALIDDIISAMRQmDMSVEGVFRKNGNIRRLKELTEEIDkNPTEVpdLSKENP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   115 CDIAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL-LLSCLLADHTVHVLRYFFNFLRNVSLRS-----SEN 188
Cdd:cd04397   81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLhLVYCLLPKYHRDTMEVLFSFLKWVSSFShideeTGS 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 7661858   189 KMDSSNLAVIFAPNLLQTSEGHEKMSSNTEkklrLQAAVVQTLIDYASDIGRVPDFI 245
Cdd:cd04397  161 KMDIHNLATVITPNILYSKTDNPNTGDEYF----LAIEAVNYLIENNEEFCEVPDEL 213
RhoGAP_DLC1 cd04375
RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 44-225 1.62e-23

RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239840  Cd Length: 220  Bit Score: 99.80  E-value: 1.62e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    44 GKIFGVPFNALphsaVPEYGH-IPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDIAG 119
Cdd:cd04375    2 KNVFGVPLLVN----LQRTGQpLPRSIQQAMRWLRNNaLDQVGLFRKSGVKSRIQKLRSMIESSTDNvnYDGQQAYDVAD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   120 LLKQFFRELPEPILPADLHEALLKA-QQLGTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVI 198
Cdd:cd04375   78 MLKQYFRDLPEPLLTNKLSETFIAIfQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVC 157

                        170       180
                 ....*....|....*....|....*..
gi 7661858   199 FAPNLLQTSEGHEKMSSNTEKKLRLQA 225
Cdd:cd04375  158 LAPSLFHLNTSRRENSSPARRMQRKKS 184
RhoGAP_GMIP_PARG1 cd04378
RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 47-234 1.83e-23

RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239843  Cd Length: 203  Bit Score: 99.42  E-value: 1.83e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNALPHSaVPEygHIPsFLVDACTSLEDH--IHTEGLFRKSGSVIR----LKALKNKVDHGEgcLSSAPPCDIAGL 120
Cdd:cd04378    1 FGVDFSQVPRD-FPD--EVP-FIIKKCTSEIENraLGVQGIYRVSGSKARveklCQAFENGKDLVE--LSELSPHDISSV 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   121 LKQFFRELPEPILPADLHE---ALLKAQQLGTEEKNKATL-------------LLSCLLADHTvHVLRYFFNFLRNVSLR 184
Cdd:cd04378   75 LKLFLRQLPEPLILFRLYNdfiALAKEIQRDTEEDKAPNTpievnriirklkdLLRQLPASNY-NTLQHLIAHLYRVAEQ 153

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 7661858   185 SSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDY 234
Cdd:cd04378  154 FEENKMSPNNLGIVFGPTLIRPRPGDADVSLSSLVDYGYQARLVEFLITN 203
RhoGAP_fRGD1 cd04398
RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 47-238 3.08e-23

RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239863  Cd Length: 192  Bit Score: 98.24  E-value: 3.08e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNAL---PHSAVPEyghipsfLVDACTSLEDH--IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPCD----- 116
Cdd:cd04398    1 FGVPLEDLilrEGDNVPN-------IVYQCIQAIENfgLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDyesdi 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   117 --IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL-LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSS 193
Cdd:cd04398   74 hsVASLLKLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALhGLINDLPDANYATLRALMFHLARIKEHESVNRMSVN 153

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 7661858   194 NLAVIFAPNLLQTSEGH-EKMSSntekklrlQAAVVQTLIDYASDI 238
Cdd:cd04398  154 NLAIIWGPTLMNAAPDNaADMSF--------QSRVIETLLDNAYQI 191
RhoGAP_nadrin cd04386
RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 67-204 3.09e-22

RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239851  Cd Length: 203  Bit Score: 95.60  E-value: 3.09e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    67 SFLVDACTS--LEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAP----PCDIAGLLKQFFRELPEPILPADLHEA 140
Cdd:cd04386   21 ALPIEACVMclLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEfysdPHAVASALKSYLRELPDPLLTYNLYED 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7661858   141 LLKAQQLGTEEKNKATLLLSC-LLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL 204
Cdd:cd04386  101 WVQAANKPDEDERLQAIWRILnKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLL 165
RhoGAP_srGAP cd04383
RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 80-214 5.80e-22

RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239848  Cd Length: 188  Bit Score: 94.41  E-value: 5.80e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    80 IHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPP-CDI---AGLLKQFFRELPEPILPADLHEALLKAQQLG--TEEKN 153
Cdd:cd04383   34 LQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNdHDInsvAGVLKLYFRGLENPLFPKERFEDLMSCVKLEnpTERVH 113

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7661858   154 KATLLLSCLLADHTVhVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMS 214
Cdd:cd04383  114 QIREILSTLPRSVII-VMRYLFAFLNHLSQFSDENMMDPYNLAICFGPTLMPVPEGQDQVS 173
RhoGAP_ARHGAP18 cd04391
RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 46-246 1.24e-21

RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239856  Cd Length: 216  Bit Score: 94.34  E-value: 1.24e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    46 IFGVPFNAL--PHSAVPEYGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVD----HGEGCLSSAPPCDIA 118
Cdd:cd04391    1 LFGVPLSTLleRDQKKVPGSKVPLIFQKLINKLEERgLETEGILRIPGSAQRVKFLCQELEakfyEGTFLWDQVKQHDAA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   119 GLLKQFFRELPEPILPADLHEALLKAQQLGT-EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAV 197
Cdd:cd04391   81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSkKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVAM 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 7661858   198 IFAPNLLQTSEGHEKMSSNTEKKLRLQAA---VVQTLIDYASDIGRVPDFIL 246
Cdd:cd04391  161 IMAPNLFPPRGKHSKDNESLQEEVNMAAGcanIMRLLIRYQDLLWTVPSFLI 212
RhoGAP_ARHGAP21 cd04395
RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 47-236 1.12e-20

RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239860  Cd Length: 196  Bit Score: 90.92  E-value: 1.12e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNALPHSAVPEYghIPsFLVDACTSL-EDH-IHTEGLFRKSGSVIRLKALKNKVDHG--EGCLSSAPPCD---IAG 119
Cdd:cd04395    2 FGVPLDDCPPSSENPY--VP-LIVEVCCNIvEARgLETVGIYRVPGNNAAISALQEELNRGgfDIDLQDPRWRDvnvVSS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   120 LLKQFFRELPEPILPADLHEALLKAQQL-GTEEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVI 198
Cdd:cd04395   79 LLKSFFRKLPEPLFTNELYPDFIEANRIeDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIV 158

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 7661858   199 FAPNLLQTSEGH-EKMSSNtekkLRLQAAVVQTLIDYAS 236
Cdd:cd04395  159 FGPTLVRTSDDNmETMVTH----MPDQCKIVETLIQHYD 193
RhoGAP_myosin_IX cd04377
RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 47-232 9.63e-20

RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239842  Cd Length: 186  Bit Score: 87.88  E-value: 9.63e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNALphsaVPEYGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHG--EGCLSSAPPCDIAGLLKQ 123
Cdd:cd04377    1 FGVSLSSL----TSEDRSVPLVLEKLLEHIEMHgLYTEGIYRKSGSANKIKELRQGLDTDpdSVNLEDYPIHVITSVLKQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   124 FFRELPEPILPADLHEALLKAQQLgtEEKNKATLLLSCLL-----ADHTVhVLRYFFNFLRnVSLRSSENKMDSSNLAVI 198
Cdd:cd04377   77 WLRELPEPLMTFELYENFLRAMEL--EEKQERVRALYSVLeqlprANLNT-LERLIFHLVR-VALQEEVNRMSANALAIV 152

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 7661858   199 FAPNLLQTSE-GHEKMSSNTEKKlrlQAAVVQTLI 232
Cdd:cd04377  153 FAPCILRCPDtADPLQSLQDVSK---TTTCVETLI 184
RhoGAP_ARAP cd04385
RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
 65-234 2.02e-19

RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239850  Cd Length: 184  Bit Score: 86.98  E-value: 2.02e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    65 IPsFLVDACTS-LEDH-IHTEGLFRKSGSVIR----LKALKNKVDHGEGCLSSAPPCDIAGLLKQFFRELPEPILPADLH 138
Cdd:cd04385   15 IP-VIVDKCIDfITQHgLMSEGIYRKNGKNSSvkklLEAFRKDARSVQLREGEYTVHDVADVLKRFLRDLPDPLLTSELH 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   139 EALLKAqqlgTEEKNKATL------LLSCLLADH--TVHVLryfFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTsEGH 210
Cdd:cd04385   94 AEWIEA----AELENKDERiarykeLIRRLPPINraTLKVL---IGHLYRVQKHSDENQMSVHNLALVFGPTLFQT-DEH 165

                        170       180
                 ....*....|....*....|....
gi 7661858   211 EKMSSNTEKKlrlqaaVVQTLIDY 234
Cdd:cd04385  166 SVGQTSHEVK------VIEDLIDN 183
RhoGAP_GMIP cd04408
RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP ...
 47-232 1.10e-18

RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239873  Cd Length: 200  Bit Score: 85.25  E-value: 1.10e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNALPHSaVPEygHIPsFLVDACTSLEDH--IHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDIAGLLK 122
Cdd:cd04408    1 FGVDFSQLPRD-FPE--EVP-FVVVRCTAEIENraLGVQGIYRISGSKARVEKLCQAFENGRDLvdLSGHSPHDITSVLK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   123 QFFRELPEPILPADLHE---ALLKAQQLGTEEKNKATLL----------LSCLLADHTVHVLRYFFNFLRNVSLRSSENK 189
Cdd:cd04408   77 HFLKELPEPVLPFQLYDdfiALAKELQRDSEKAAESPSIveniirslkeLLGRLPVSNYNTLRHLMAHLYRVAERFEDNK 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 7661858   190 MDSSNLAVIFAPNLLQTSEGHEkMSSNTEKKLRLQAAVVQTLI 232
Cdd:cd04408  157 MSPNNLGIVFGPTLLRPLVGGD-VSMICLLDTGYQAQLVEFLI 198
RhoGAP_MgcRacGAP cd04382
RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 65-237 4.75e-18

RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239847  Cd Length: 193  Bit Score: 83.50  E-value: 4.75e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    65 IPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEG--CLSSAPPCDIAGLLKQFFRELPEPILPADLHEAL 141
Cdd:cd04382   17 IPALIVHCVNEIEARgLTEEGLYRVSGSEREVKALKEKFLRGKTvpNLSKVDIHVICGCLKDFLRSLKEPLITFALWKEF 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   142 LKAQQLGTEEKNKATLLLS-CLLADHTVHVLRYFFNFLRNVSlRSSENKMDSSNLAVIFAPNLLqtseGHEKMSSNTEKK 220
Cdd:cd04382   97 MEAAEILDEDNSRAALYQAiSELPQPNRDTLAFLILHLQRVA-QSPECKMDINNLARVFGPTIV----GYSVPNPDPMTI 171

                        170       180
                 ....*....|....*....|
gi 7661858   221 LR---LQAAVVQTLIDYASD 237
Cdd:cd04382  172 LQdtvRQPRVVERLLEIPSD 191
RhoGAP_ARHGAP19 cd04392
RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 76-251 7.37e-18

RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239857  Cd Length: 208  Bit Score: 83.28  E-value: 7.37e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    76 LEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSA--PPCDIAGLLKQFFRELPEPILP----------ADLHEALL 142
Cdd:cd04392   20 LEKNLRVEGLFRKPGNSARQQELRDLLNSGTDLdLESGgfHAHDCATVLKGFLGELPEPLLThahypahlqiADLCQFDE 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   143 KAQQLGTEEKNK---ATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLL----QTSEG-HEkms 214
Cdd:cd04392  100 KGNKTSAPDKERlleALQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLIcprnLTPEDlHE--- 176

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 7661858   215 snTEKKLrlqAAVVQTLIDYASDIGRVPDFILEKIPA 251
Cdd:cd04392  177 --NAQKL---NSIVTFMIKHSQKLFKAPAYLREDARA 208
RhoGAP_KIAA1688 cd04389
RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
 82-232 1.72e-17

RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239854  Cd Length: 187  Bit Score: 81.67  E-value: 1.72e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    82 TEGLFRKSGSVIRLKALKNKVDHGEGCLSS-APPCDIAGLLKQFFRELPEPILPADLHEallkaQQLGTEEKNKATLLLS 160
Cdd:cd04389   40 TEGIFRVPGDIDEVNELKLRVDQWDYPLSGlEDPHVPASLLKLWLRELEEPLIPDALYQ-----QCISASEDPDKAVEIV 114

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7661858   161 CLLADHTVHVLRYFFNFLRNVSLRS--SENKMDSSNLAVIFAPNLLQ-TSEGHEKMSSNTEKKLRLqaavVQTLI 232
Cdd:cd04389  115 QKLPIINRLVLCYLINFLQVFAQPEnvAHTKMDVSNLAMVFAPNILRcTSDDPRVIFENTRKEMSF----LRTLI 185
RhoGAP_myosin_IXB cd04407
RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 47-215 6.31e-17

RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239872 [Multi-domain]  Cd Length: 186  Bit Score: 80.04  E-value: 6.31e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNALPHSAVPeyghIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKN--KVDHGEGCLSSAPPCDIAGLLKQ 123
Cdd:cd04407    1 FGVRVGSLTSNKTS----VPIVLEKLLEHVEMHgLYTEGIYRKSGSANRMKELHQllQADPENVKLENYPIHAITGLLKQ 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   124 FFRELPEPILPADLHEALLKAQQLgTEEKNKATLLLSCL----LADHTVhVLRYFFNFLRnVSLRSSENKMDSSNLAVIF 199
Cdd:cd04407   77 WLRELPEPLMTFAQYNDFLRAVEL-PEKQEQLQAIYRVLeqlpTANHNT-LERLIFHLVK-VALEEDVNRMSPNALAIVF 153

                        170
                 ....*....|....*.
gi 7661858   200 APNLLQTSEGHEKMSS 215
Cdd:cd04407  154 APCLLRCPDSSDPLTS 169
RhoGAP_chimaerin cd04372
RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 68-232 2.74e-16

RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239837 [Multi-domain]  Cd Length: 194  Bit Score: 78.33  E-value: 2.74e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    68 FLVDACTS-LEDH-IHTEGLFRKSGSVIRLKALKNKVDH-GEGC-LSSAPPCD---IAGLLKQFFRELPEPILPADLHEA 140
Cdd:cd04372   18 MVVDMCIReIEARgLQSEGLYRVSGFAEEIEDVKMAFDRdGEKAdISATVYPDinvITGALKLYFRDLPIPVITYDTYPK 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   141 LLKAQQLGT-EEKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSeghEKMSSNTEK 219
Cdd:cd04372   98 FIDAAKISNpDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGPTLMRPP---EDSALTTLN 174

                        170
                 ....*....|...
gi 7661858   220 KLRLQAAVVQTLI 232
Cdd:cd04372  175 DMRYQILIVQLLI 187
RhoGAP_ARHGAP22_24_25 cd04390
RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
 62-205 1.38e-15

RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239855 [Multi-domain]  Cd Length: 199  Bit Score: 76.33  E-value: 1.38e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    62 YG-HIPSFLVDACTS--LEDHIHTEGLFRKSGSVIRLKALKNKVDHGEgclssAPPCD-------IAGLLKQFFRELPEP 131
Cdd:cd04390   17 FGpRLVPILVEQCVDfiREHGLKEEGLFRLPGQANLVKQLQDAFDAGE-----RPSFDsdtdvhtVASLLKLYLRELPEP 91

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7661858   132 ILPADLHEALLKAQQL--GTEEKNKATLL-LSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQ 205
Cdd:cd04390   92 VIPWAQYEDFLSCAQLlsKDEEKGLGELMkQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLATVFGPNILR 168
RhoGAP_Bcr cd04387
RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr ...
 80-217 1.51e-15

RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239852 [Multi-domain]  Cd Length: 196  Bit Score: 76.12  E-value: 1.51e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    80 IHTEGLFRKSGSVIRLKALKNKVDHGEG----CLSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAQQLgTEEKNKA 155
Cdd:cd04387   32 MEEVGIYRISGVATDIQALKAAFDTNNKdvsvMLSEMDVNAIAGTLKLYFRELPEPLFTDELYPNFAEGIAL-SDPVAKE 110

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7661858   156 TLLLSCLLADHTVHVLRYFF--NFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNT 217
Cdd:cd04387  111 SCMLNLLLSLPDPNLVTFLFllHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESKIPTNT 174
RhoGAP_fSAC7_BAG7 cd04396
RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 46-238 1.81e-15

RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239861  Cd Length: 225  Bit Score: 76.68  E-value: 1.81e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    46 IFGVPF-NALPHSAVP-----------EYGHIPsFLVDACTSL--EDHIHTEGLFRKSGSVIRLKALKNkvdhgegcLSS 111
Cdd:cd04396    1 VFGVSLeESLKYASVAisivdedgeqyVYGYIP-VVVAKCGVYlkENATEVEGIFRVAGSSKRIRELQL--------IFS 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   112 APP-------------CDIAGLLKQFFRELPEPILPADLHEA----LLKAQQLGTEEKNKATLLLS-------------- 160
Cdd:cd04396   72 TPPdygksfdwdgytvHDAASVLRRYLNNLPEPLVPLDLYEEfrnpLRKRPRILQYMKGRINEPLNtdidqaikeyrdli 151

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 7661858   161 CLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLqTSEGHEKMSsnteKKLRLQAAVVQTLIDYASDI 238
Cdd:cd04396  152 TRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGIL-SHPDHEMDP----KEYKLSRLVVEFLIEHQDKF 224
RhoGAP_ARHGAP27_15_12_9 cd04403
RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
 61-232 1.05e-14

RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239868 [Multi-domain]  Cd Length: 187  Bit Score: 73.58  E-value: 1.05e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    61 EYGHIPSFlVDACT-SLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI---AGLLKQFFRELPEPILP 134
Cdd:cd04403   12 ENSTVPKF-VRLCIeAVEKRgLDVDGIYRVSGNLAVIQKLRFAVDHDEKLdLDDSKWEDIhviTGALKLFFRELPEPLFP 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   135 ADLHEALLKA-QQLGTEEKNKA--TLLLSCLLADHtvHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTseghE 211
Cdd:cd04403   91 YSLFNDFVAAiKLSDYEQRVSAvkDLIKSLPKPNH--DTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPTLLRP----E 164

                        170       180
                 ....*....|....*....|.
gi 7661858   212 KMSSNTEKKLRLQAAVVQTLI 232
Cdd:cd04403  165 QETGNIAVHMVYQNQIVELIL 185
RhoGAP_fBEM3 cd04400
RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of ...
 46-203 5.45e-14

RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239865 [Multi-domain]  Cd Length: 190  Bit Score: 71.62  E-value: 5.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    46 IFGVPFN-ALPHSAVPEYGH-IPSFLVDACTSLEDH--IHTEGLFRKSGSVIRLKALKNKVD-HGEGCLSSAP----PCD 116
Cdd:cd04400    1 IFGSPLEeAVELSSHKYNGRdLPSVVYRCIEYLDKNraIYEEGIFRLSGSASVIKQLKERFNtEYDVDLFSSSlypdVHT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   117 IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL--LADHTVHVLRYFFNFLRNVSLRSSENKMDSSN 194
Cdd:cd04400   81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLVsqLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160


                 ....*....
gi 7661858   195 LAVIFAPNL 203
Cdd:cd04400  161 VCIVFSPTL 169
RhoGAP_PARG1 cd04409
RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 47-234 6.34e-14

RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239874  Cd Length: 211  Bit Score: 71.76  E-value: 6.34e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFNalpHSAVPEYGHIPsFLVDACTS-LEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDIAGLLK 122
Cdd:cd04409    1 FGADFA---QVAKKSPDGIP-FIIKKCTSeIESRaLCLKGIYRVNGAKSRVEKLCQAFENGKDLveLSELSPHDISNVLK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   123 QFFRELPEPILPADLHEALL---KAQQLGTEEKN---------------------KATLLLSCLLADHtVHVLRYFFNFL 178
Cdd:cd04409   77 LYLRQLPEPLILFRLYNEFIglaKESQHVNETQEakknsdkkwpnmctelnrillKSKDLLRQLPAPN-YNTLQFLIVHL 155

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 7661858   179 RNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDY 234
Cdd:cd04409  156 HRVSEQAEENKMSASNLGIIFGPTLIRPRPTDATVSLSSLVDYPHQARLVELLITY 211
RhoGAP_p190 cd04373
RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 47-204 3.97e-13

RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239838  Cd Length: 185  Bit Score: 69.02  E-value: 3.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPfnaLPHSAVPEyGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDH-GEGCLSS--APPCDIAGLLK 122
Cdd:cd04373    1 FGVP---LANVVTSE-KPIPIFLEKCVEFIEATgLETEGIYRVSGNKTHLDSLQKQFDQdHNLDLVSkdFTVNAVAGALK 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   123 QFFRELPEPILPADLHEALLKAQQLGTEEKnKATLLLSCLLADHTVH--VLRYFFNFLRNVSLRSSENKMDSSNLAVIFA 200
Cdd:cd04373   77 SFFSELPDPLIPYSMHLELVEAAKINDREQ-RLHALKELLKKFPPENfdVFKYVITHLNKVSQNSKVNLMTSENLSICFW 155


                 ....
gi 7661858   201 PNLL 204
Cdd:cd04373  156 PTLM 159
RhoGAP_Graf cd04374
RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase ...
 80-233 2.06e-12

RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239839  Cd Length: 203  Bit Score: 67.42  E-value: 2.06e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    80 IHTEGLFRKSGSVIRLKALKNKV-DHGEGCLSSAPPCD-------IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEE 151
Cdd:cd04374   44 INEQGLYRVVGVNSKVQKLLSLGlDPKTSTPGDVDLDNseweiktITSALKTYLRNLPEPLMTYELHNDFINAAKSENLE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   152 -KNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEghEKMSSNTEkkLRLQAAVVQT 230
Cdd:cd04374  124 sRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQE--ETVAAIMD--IKFQNIVVEI 199


                 ...
gi 7661858   231 LID 233
Cdd:cd04374  200 LIE 202
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
 65-232 1.66e-11

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 64.45  E-value: 1.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    65 IPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVDHGEGCLSSAPPC--DI---AGLLKQFFRELPEPILPADLHE 139
Cdd:cd04384   18 VPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYiqDIhsvSSLCKLYFRELPNPLLTYQLYE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   140 ALLKAQQLGTEEKNKATLLLSCL-LADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSSNTE 218
Cdd:cd04384   98 KFSEAVSAASDEERLEKIHDVIQqLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGTA 177

                        170
                 ....*....|....*.
gi 7661858   219 KKL--RLQAAVVQTLI 232
Cdd:cd04384  178 AFMevRIQSVVVEFIL 193
RhoGAP_myosin_IXA cd04406
RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 80-215 2.45e-11

RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239871  Cd Length: 186  Bit Score: 63.87  E-value: 2.45e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    80 IHTEGLFRKSGSVIRLKALKNKVDHGEGC--LSSAPPCDIAGLLKQFFRELPEPILPADLHEALLKAqqLGTEEKNKATL 157
Cdd:cd04406   31 LYTEGIYRKSGSTNKIKELRQGLDTDANSvnLDDYNIHVIASVFKQWLRDLPNPLMTFELYEEFLRA--MGLQERRETVR 108

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7661858   158 ----LLSCLLADHTVHVLRYFFNFLRnVSLRSSENKMDSSNLAVIFAPNLLQTSEGHEKMSS 215
Cdd:cd04406  109 gvysVIDQLSRTHLNTLERLIFHLVR-IALQEETNRMSANALAIVFAPCILRCPDTTDPLQS 169
RhoGAP_SYD1 cd04379
RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
 84-208 3.45e-11

RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239844  Cd Length: 207  Bit Score: 63.64  E-value: 3.45e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    84 GLFRKSGSVIRLKALKNKVDHGEG--CLSSAPPCD---IAGLLKQFFRELPEPILPADLHEALLKAQQLGT----EEKNK 154
Cdd:cd04379   38 GLYRLCGSAAKKKELRDAFERNSAavELSEELYPDinvITGVLKDYLRELPEPLITPQLYEMVLEALAVALpndvQTNTH 117

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 7661858   155 ATL-LLSClLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 208
Cdd:cd04379  118 LTLsIIDC-LPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQ 171
RhoGap_RalBP1 cd04381
RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 47-203 7.96e-10

RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239846 [Multi-domain]  Cd Length: 182  Bit Score: 59.37  E-value: 7.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    47 FGVPFN-ALPHSAVPEYGHIPSFLVDACTSLEDH-IHTEGLFRKSGSVIRLKALKNKVDHGEG-CLSSAPPCDIAGLLKQ 123
Cdd:cd04381    1 FGASLSlAVERSRCHDGIDLPLVFRECIDYVEKHgMKCEGIYKVSGIKSKVDELKAAYNRRESpNLEEYEPPTVASLLKQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   124 FFRELPEPILPADLHEALLKAQQLGTE-EKNKATLLLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPN 202
Cdd:cd04381   81 YLRELPEPLLTKELMPRFEEACGRPTEaEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPT 160


                 .
gi 7661858   203 L 203
Cdd:cd04381  161 V 161
RhoGAP_OCRL1 cd04380
RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
 45-234 5.48e-09

RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239845  Cd Length: 220  Bit Score: 57.35  E-value: 5.48e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858    45 KIFGVPFNALPHSAVPEYGHIPSF-------LVDACtsLEDHIHTEGLFRKSGSVIRLKALKNKV----DHGEGCLSSAP 113
Cdd:cd04380   26 PGIRNLIDQLELGDNPDYSEVPLSipkeiwrLVDYL--YTRGLAQEGLFEEPGLPSEPGELLAEIrdalDTGSPFNSPGS 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   114 PCDIAGLLKQFFRELPEPILPADLHEALLkaQQLGTEEKNKATLLlSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSS 193
Cdd:cd04380  104 AESVAEALLLFLESLPDPIIPYSLYERLL--EAVANNEEDKRQVI-RISLPPVHRNVFVYLCSFLRELLSESADRGLDEN 180

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 7661858   194 NLAVIFAPNLLQTSEGHEKMSSNTEKKlRLQAAVVQTLIDY 234
Cdd:cd04380  181 TLATIFGRVLLRDPPRAGGKERRAERD-RKRAFIEQFLLND 220
RhoGAP_p85 cd04388
RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
 116-230 4.33e-03

RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239853  Cd Length: 200  Bit Score: 39.47  E-value: 4.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7661858   116 DIAGL---LKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATLLLSCL----LADHTVHVLRYFFNFLRNVSLRSSEN 188
Cdd:cd04388   65 DVAALadaLKRYLLDLPNPVIPAPVYSEMISRAQEVQSSDEYAQLLRKLIrspnLPHQYWLTLQYLLKHFFRLCQSSSKN 144

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 7661858   189 KMDSSNLAVIFAPNLLQTSEGHEkmsSNTEKKLRLQAAVVQT 230
Cdd:cd04388  145 LLSARALAEIFSPLLFRFQPASS---DSPEFHIRIIEVLITS 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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