|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
218-781 |
1.19e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 218 FEGLQQQFLG-ANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLresQKLFQN 296
Cdd:TIGR02168 346 LEELKEELESlEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 297 GKEREIQL-EAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVL 375
Cdd:TIGR02168 423 IEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 376 SLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQ 455
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIK 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 456 AQKAHAMSANMNKALQEELTELKDEISLYESAAKL------GIHPSDSEG---ELNIELTESY--VDLGIKKVNWK---- 520
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDnalELAKKLRPGYriVTLDGDLVRPGgvit 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 521 ---KSKVTSIVQEEDPNEELSKD-----EFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKK------ 586
Cdd:TIGR02168 663 ggsAKTNSSILERRREIEELEEKieeleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLArleaev 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 587 -------DEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLcnqmrqm 659
Cdd:TIGR02168 743 eqleeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL------- 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 660 vQDFDHDKQEAVDRCERTyqqhHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQ-----LRSELDKLNKEVTAVQECYL 734
Cdd:TIGR02168 816 -NEEAANLRERLESLERR----IAATERRLEDLEEQIEELSEDIESLAAEIEELEelieeLESELEALLNERASLEEALA 890
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 110347568 735 EVCREKDNLELTLRKTTEKEQQTQEKIKE--KLIQQLEKEWQsKLDQTI 781
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEElrEKLAQLELRLE-GLEVRI 938
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
295-1045 |
1.27e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 1.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 295 QNGKEREIQLEAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQqlvdLHHSESLQRAREQHESIVMGLTKKYEE-- 372
Cdd:PTZ00121 1053 DGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGK----AEEAKKTETGKAEEARKAEEAKKKAEDar 1128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 373 QVLSLQKNLDA--TVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEesQKQCAHLLQSGSVQEVAQLQ 450
Cdd:PTZ00121 1129 KAEEARKAEDArkAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE--VRKAEELRKAEDARKAEAAR 1206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 451 FQLQQAQKAHAMSANMNKALQE--ELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIKKVNWKKSKVTSIV 528
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAvkKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 529 QEEDPNEELSKDEFI-----LKLKAEVQRLlgsnsmkrhlVSQLQNDLKDCHKKIEDLHQvKKDEKSIEVETKTDTSEKP 603
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKkkadeAKKKAEEAKK----------ADEAKKKAEEAKKKADAAKK-KAEEAKKAAEAAKAEAEAA 1355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 604 KNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlcNQMRQMVQDFDHDKQEAVDRCERTYQQHH- 682
Cdd:PTZ00121 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED--KKKADELKKAAAAKKKADEAKKKAEEKKKa 1433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 683 EAMKTQIRESLLAKHALEKQQlfEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIK 762
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAE--EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 763 EKLIQQLEKewQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKDiaiKGAMKKLEIe 842
Cdd:PTZ00121 1512 ADEAKKAEE--AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK---NMALRKAEE- 1585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 843 lelkhcenitkqveiaVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVsvnkrisfavsEAKEKWKSELENMRKNIL 922
Cdd:PTZ00121 1586 ----------------AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI-----------KAEELKKAEEEKKKVEQL 1638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 923 PGKELEEKihslQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFL--DDHRNKINEVLAAAKED 1000
Cdd:PTZ00121 1639 KKKEAEEK----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEE 1714
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 110347568 1001 fmKQKTELLLQKETELQTCLDQSRREwtMQEAKRIQLEIYQYEED 1045
Cdd:PTZ00121 1715 --KKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEE 1755
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-1013 |
1.37e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 251 QLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKER--EIQ-----LEAQIKALETQIQALKVNEE 323
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieELQkelyaLANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 324 QMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVK 403
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDEL--AEELAELEEKLEEL--------KEELESLEAELEELEAELEELESRLEELEEQLE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 404 QLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISL 483
Cdd:TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 484 YESAAKLgihpsdsegelnIELTESYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKDEFILKLKAE-----VQRL----- 553
Cdd:TIGR02168 463 LEELREE------------LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgiLGVLselis 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 554 ------------LGSNSmkRHLVSQLQNDLKDChkkIEDLHQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDI 621
Cdd:TIGR02168 531 vdegyeaaieaaLGGRL--QAVVVENLNAAKKA---IAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAK 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 622 LLLKNEIQV----------------LQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEA- 684
Cdd:TIGR02168 606 DLVKFDPKLrkalsyllggvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEk 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 685 ---MKTQIRESLLAKHALEKQQlfEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKtTEKEQQTQEKI 761
Cdd:TIGR02168 686 ieeLEEKIAELEKALAELRKEL--EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ-LSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 762 KEKLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAImIEEQKCTIQQNLEQEKDIAIKGAMKKLEI 841
Cdd:TIGR02168 763 IEELEERLEEA-EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE-LTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 842 ELELKHCENITKQVEIAVQnahqrwlgelpELAEYQalvkAEQKKWEEQHEVSVNKRISfaVSEAKEKWKSELENMRKNI 921
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAA-----------EIEELE----ELIEELESELEALLNERAS--LEEALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 922 lpgKELEEKIHSLQKELELKNEEVpVVIRAELAKARSEWNK-------------EKQEEIHRIQEQNEQDYRQFLDDHRN 988
Cdd:TIGR02168 904 ---RELESKRSELRRELEELREKL-AQLELRLEGLEVRIDNlqerlseeysltlEEAEALENKIEDDEEEARRRLKRLEN 979
|
810 820 830
....*....|....*....|....*....|.
gi 110347568 989 KINE---VLAAAKEDFMKQK---TELLLQKE 1013
Cdd:TIGR02168 980 KIKElgpVNLAAIEEYEELKeryDFLTAQKE 1010
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
239-481 |
1.54e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 239 IQLQVLN-KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQA 317
Cdd:COG1196 227 AELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 318 LKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESivmgLTKKYEEQVLSLQKNLDATVTALKEQEDICSR 397
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEEL--EEELEELEEELEE----AEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 398 LKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKA-LQEELTE 476
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAeLEEEEEA 460
|
....*
gi 110347568 477 LKDEI 481
Cdd:COG1196 461 LLELL 465
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-999 |
1.33e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREI-QLEAQIKALETQIQALKVNEEQ 324
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 325 MIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQ 404
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEEL--EREIEEERKRRDKL--------TEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 405 LERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQsgsvqevaqlqfqlqQAQKAHAMSANMNkALQEELTELKDEISLY 484
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD---------------LNAAIAGIEAKIN-ELEEEKEDKALEIKKQ 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 485 ESAAKLGIHPSDSEGELNIELTESYVDLgikkvnwkkskvtsivqeedpNEELSKDEF-ILKLKAEVQRLLGSNSMKRHL 563
Cdd:TIGR02169 454 EWKLEQLAADLSKYEQELYDLKEEYDRV---------------------EKELSKLQReLAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 564 VSQLQNDLKDCHKKIEDLHQVkkdeksievetktdtseKPKNQLWPESSTSD----VVRDDILLLKNEIQVLQQQNQElk 639
Cdd:TIGR02169 513 EEVLKASIQGVHGTVAQLGSV-----------------GERYATAIEVAAGNrlnnVVVEDDAVAKEAIELLKRRKAG-- 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 640 etegklRNTNQDLcNQMRQMVQDFDHDKQE-----AVD--RCERTYQ-------------QHHEAMKT---QIRESLLAK 696
Cdd:TIGR02169 574 ------RATFLPL-NKMRDERRDLSILSEDgvigfAVDlvEFDPKYEpafkyvfgdtlvvEDIEAARRlmgKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 697 HALEK-------------QQLFEAYERTHLQ-LRSELDKLNKEVTAVQEcylEVCREKDNLELTLRKTTEKEQQTQEKIK 762
Cdd:TIGR02169 647 ELFEKsgamtggsraprgGILFSRSEPAELQrLRERLEGLKRELSSLQS---ELRRIENRLDELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 763 EklIQQLEKEwQSKLDQTIKAMKKKTldcgSQTDQVTTSDVISKKEMAIMIEEQkctiqqnleQEKDIAIKGAMKKLEIE 842
Cdd:TIGR02169 724 E--IEQLEQE-EEKLKERLEELEEDL----SSLEQEIENVKSELKELEARIEEL---------EEDLHKLEEALNDLEAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 843 LELKHCENITKQVEiAVQNAHQRWLGELPELAeyQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNIl 922
Cdd:TIGR02169 788 LSHSRIPEIQAELS-KLEEEVSRIEARLREIE--QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK- 863
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 110347568 923 pgKELEEKIHSLQKELELKNEEvpvviRAELAKARSEWNKEKQEEIHRIQEQNEQdyRQFLDDHRNKINEVLAAAKE 999
Cdd:TIGR02169 864 --EELEEELEELEAALRDLESR-----LGDLKKERDELEAQLRELERKIEELEAQ--IEKKRKRLSELKAKLEALEE 931
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1024 |
6.07e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 714 QLRSELDKLNKEvTAVQECYLEVCREKDNLELTL-----------RKTTEKEQQTQEKIKEKL---IQQLEKEWQSKLdQ 779
Cdd:TIGR02169 195 EKRQQLERLRRE-REKAERYQALLKEKREYEGYEllkekealerqKEAIERQLASLEEELEKLteeISELEKRLEEIE-Q 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 780 TIKAMKKKTLDCGSQTDQVTTSDViskKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiav 859
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKI---GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 860 qnahqRWLGELPEL-AEYQALVKAEQKKWEEQHEVSVNKRISF----AVSEAKEKWKSELENMRKNILPGKELEEKIHSL 934
Cdd:TIGR02169 347 -----EERKRRDKLtEEYAELKEELEDLRAELEEVDKEFAETRdelkDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 935 QKELELKNEevpvVIRAELAKARSEwNKEKQEEIHRIQEQNEQ------DYRQFLDDHRNKINEVlaaakEDFMKQKTEL 1008
Cdd:TIGR02169 422 LADLNAAIA----GIEAKINELEEE-KEDKALEIKKQEWKLEQlaadlsKYEQELYDLKEEYDRV-----EKELSKLQRE 491
|
330
....*....|....*.
gi 110347568 1009 LLQKETELQTCLDQSR 1024
Cdd:TIGR02169 492 LAEAEAQARASEERVR 507
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
225-440 |
6.20e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 6.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 225 FLGANENSAENMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQL 304
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 305 EAQIKALETQIQALKVNEEQMI----KKSRTTEMAL----ESLKQQLVDLHHSESLQRAREQHesivmgltkkyEEQVLS 376
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLralyRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQ-----------AEELRA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 110347568 377 LQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQS 440
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
303-1015 |
6.73e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 54.67 E-value: 6.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 303 QLEAQIKALETQIQALKVNEEQMikksRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLSL---QK 379
Cdd:TIGR00606 180 SATRYIKALETLRQVRQTQGQKV----QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLknrLK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 380 NLDATVTALKEQEDICSRLKDHVKQLERNqeaiKLEKTEIINKLTRSLEESQKQCAHLLQSgsvqEVAQLQFQLQQAQKA 459
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKD----NSELELKMEKVFQGTDEQLNDLYHNHQR----TVREKERELVDCQRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 460 HAMSANMNKALQEELTELKDEISLYESAAK----------LGIHPSDSEGELNIELTESYVDLGIKKVNW-------KKS 522
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADrhqehirardSLIQSLATRLELDGFERGPFSERQIKNFHTlvierqeDEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 523 KVTSIVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSIEVETKTDTSEK 602
Cdd:TIGR00606 408 KTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 603 PKNQlwpESSTSDVVRDDILLLKNE-IQVLQQQNQELKETEGKLRNTnqdlcnQMRQMVQDFDHDKQEAVDRCERTYQQH 681
Cdd:TIGR00606 488 SKAE---KNSLTETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHT------TTRTQMEMLTKDKMDKDEQIRKIKSRH 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 682 HEAMKTQ--------IRESLLAKHALEKQQLFE----------AYERTHLQLRSELDKLNKEVTAVQECYLEVCREKD-- 741
Cdd:TIGR00606 559 SDELTSLlgyfpnkkQLEDWLHSKSKEINQTRDrlaklnkelaSLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDee 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 742 ----NLELTLRKTTEKEQQTQEK--IKEKLIQQLEKEWQS-------------KLDQTIKAMKKKTLDcgSQTDQVTTSD 802
Cdd:TIGR00606 639 sdleRLKEEIEKSSKQRAMLAGAtaVYSQFITQLTDENQSccpvcqrvfqteaELQEFISDLQSKLRL--APDKLKSTES 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 803 VISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKL-----EIELELKHCENITKQVE--IAVQNAHQRWLGELPELAE 875
Cdd:TIGR00606 717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLqkvnrDIQRLKNDIEEQETLLGtiMPEEESAKVCLTDVTIMER 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 876 YQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQKEL--------ELKNEEVPV 947
Cdd:TIGR00606 797 FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIqhlksktnELKSEKLQI 876
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110347568 948 VIRAELAKARSEWNKEKQEEIhriqeqneQDYRQFLDDHRNKINEvLAAAKEDFMKQKTELLLQKETE 1015
Cdd:TIGR00606 877 GTNLQRRQQFEEQLVELSTEV--------QSLIREIKDAKEQDSP-LETFLEKDQQEKEELISSKETS 935
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
288-730 |
5.77e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 5.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 288 RESQKLF-QNGKEREIQLEaQIKALETQIQALKVNEE---QMIKKSRTTEMALESLKQQLVDL-HHSESLQRAREQHESI 362
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 363 vmGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIK-------LEKTEIINKLTRSLEESQKQCA 435
Cdd:COG4717 132 --QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEelleqlsLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 436 HLLQS-GSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISLyesAAKLGIHPSDSEGELNIE----LTESYV 510
Cdd:COG4717 210 ELEEElEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL---LALLGLGGSLLSLILTIAgvlfLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 511 DLGIKKVNWKKSKVTSIVQEEDPNEELSKDEfilklKAEVQRLLGSNSMKRHL-VSQLQNDLKDCHKKIEDLHQVKKDEK 589
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELE-----EEELEELLAALGLPPDLsPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 590 SIEVETktdtSEKPKNQLWPESSTSDvvRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQE 669
Cdd:COG4717 362 ELQLEE----LEQEIAALLAEAGVED--EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110347568 670 AVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQ 730
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-775 |
6.99e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.21 E-value: 6.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 240 QLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALK 319
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 320 VNEEQMIKKsrttemaLESLKQQLvdlhhsESLQRAREQHESIVMGLTKKYEE-QVLSLQKNLDATVTALKEQEdicSRL 398
Cdd:TIGR02168 393 LQIASLNNE-------IERLEARL------ERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQ---EEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 399 KDHVKQLERNQEAIKlEKTEIINKLTRSLEESQKQCAhllqsgSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELK 478
Cdd:TIGR02168 457 ERLEEALEELREELE-EAEQALDAAERELAQLQARLD------SLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELI 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 479 DEISLYESA--AKLGIH------PSDSEGELNIELTE-------SYVDLGIKKVNWKKSKVTSIVQEEDPNEELSKD--E 541
Cdd:TIGR02168 530 SVDEGYEAAieAALGGRlqavvvENLNAAKKAIAFLKqnelgrvTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvK 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 542 FILKLKAEVQRLLGSNsmkrHLVSQLQNDLKDCHKKIEDLHQVKKDEKSI---------EVETKTDTSEKpKNQLWPESS 612
Cdd:TIGR02168 610 FDPKLRKALSYLLGGV----LVVDDLDNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILER-RREIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 613 TSDVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHE--------- 683
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElteleaeie 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 684 AMKTQIRESLLAKHALEK-----QQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQ 758
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAeieelEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
570 580
....*....|....*....|...
gi 110347568 759 EKIK------EKLIQQLEKEWQS 775
Cdd:TIGR02168 845 EQIEelsediESLAAEIEELEEL 867
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
246-786 |
7.72e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 7.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEK-------DGLTLSLRESQKLFQNGK---EREIQLEAQIKALETQI 315
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlniqkniDKIKNKLLKLELLLSNLKkkiQKNKSLESQISELKKQN 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 316 QALKVNEEQMIKKSRTTEMALESLKQQLVDLhhseslqraREQHESIVMGLTKKyeeqvlslQKNLDATVTALKEQEDIC 395
Cdd:TIGR04523 228 NQLKDNIEKKQQEINEKTTEISNTQTQLNQL---------KDEQNKIKKQLSEK--------QKELEQNNKKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 396 SRLKDHVKQL--ERNQEAIKLEKTEIINKlTRSLEESQKQCahllqSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEE 473
Cdd:TIGR04523 291 NQLKSEISDLnnQKEQDWNKELKSELKNQ-EKKLEEIQNQI-----SQNNKIISQLNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 474 LTELKDEISLyesaaklgIHPSDSEGELNIELTESyvdlGIKKVNWKKSKVTSIVQEEDPNEELSKDEFILKLKaEVQRL 553
Cdd:TIGR04523 365 LEEKQNEIEK--------LKKENQSYKQEIKNLES----QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEK-EIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 554 LGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEK------SIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNE 627
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLEtqlkvlSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 628 IQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQ----EAVDRCERTYQQHHEAMKtQIRESLLAKHAlEKQQ 703
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelkkENLEKEIDEKNKEIEELK-QTQKSLKKKQE-EKQE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 704 LFEAYERTHLQLRSEL-------DKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQE---KIKEKL--IQQLEK 771
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIeekekkiSSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKEtikEIRNKWpeIIKKIK 669
|
570
....*....|....*
gi 110347568 772 EWQSKLDQTIKAMKK 786
Cdd:TIGR04523 670 ESKTKIDDIIELMKD 684
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
237-950 |
1.34e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.05 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQL---------VIIKDEKdgLTLSLRESQKLFQNgkereiqleAQ 307
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELqqlegssdrILELDQE--LRKAERELSKAEKN---------SL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 308 IKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLSL------QKNL 381
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQL 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 382 DATVTALKEQEDIcsrLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQ----EVAQLQFQLQQAQ 457
Cdd:TIGR00606 576 EDWLHSKSKEINQ---TRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQdeesDLERLKEEIEKSS 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 458 KAHAMSANMNKALQEELTELKDEISlyeSAAKLGIHPSDSEGELNieltESYVDLgikkvnwkKSKVTSIvqeedPNEEL 537
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQ---SCCPVCQRVFQTEAELQ----EFISDL--------QSKLRLA-----PDKLK 712
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 538 SKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKDEKSievetKTDTSEKPKNQLWPESSTSDVV 617
Cdd:TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN-----DIEEQETLLGTIMPEEESAKVC 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 618 RDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLC-NQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMK-TQIRESLLA 695
Cdd:TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEqIQHLKSKTN 867
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 696 KHALEKQQLFEAYERTHlQLRSELDKLNKEvtaVQECYLEVCREKDN---LELTLRK-TTEKEQQTQEKIKEKLIQQLE- 770
Cdd:TIGR00606 868 ELKSEKLQIGTNLQRRQ-QFEEQLVELSTE---VQSLIREIKDAKEQdspLETFLEKdQQEKEELISSKETSNKKAQDKv 943
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 771 KEWQSKLDQTIKAMK--KKTLDCGSQTDQVTTSDVISKKEMAI--------MIEEQKCTIQQNLEQEK--DIAIKGAMKK 838
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKdiENKIQDGKDDYLKQKETELNTVNAQLeecekhqeKINEDMRLMRQDIDTQKiqERWLQDNLTL 1023
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 839 LEIELELKHCENITKQVE--------IAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKW 910
Cdd:TIGR00606 1024 RKRENELKEVEEELKQHLkemgqmqvLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKY 1103
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 110347568 911 KSELENMRKNILPGKELEEKIHSLQKEL----ELKNEEVPVVIR 950
Cdd:TIGR00606 1104 REMMIVMRTTELVNKDLDIYYKTLDQAImkfhSMKMEEINKIIR 1147
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
308-982 |
1.91e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 308 IKALETQIQALKVN----EEQMIKKSRTTEMALESLKQQlvdlhHSESLQRAREQHESIVMGLTKK---YEEQVLSLQKN 380
Cdd:pfam15921 226 LRELDTEISYLKGRifpvEDQLEALKSESQNKIELLLQQ-----HQDRIEQLISEHEVEITGLTEKassARSQANSIQSQ 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 381 LDATVTALKEQEDICSRlkdHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCahLLQSGSVQEVAQLQFQLQQAqkah 460
Cdd:pfam15921 301 LEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKIEELEKQL--VLANSELTEARTERDQFSQE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 461 amSANMNKALQEELTELKDEislyesaaklgihpsdsEGELNIELTESyvdlgikKVNWKKSKVTSIV------QEEDPN 534
Cdd:pfam15921 372 --SGNLDDQLQKLLADLHKR-----------------EKELSLEKEQN-------KRLWDRDTGNSITidhlrrELDDRN 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 535 EELSKDEFILKlkaevqrllgsnSMKRHLVSQLQNDLKDCHKKIEDLHQVKkdEKSIEVETKTDTSEKPKNQLWPESSTs 614
Cdd:pfam15921 426 MEVQRLEALLK------------AMKSECQGQMERQMAAIQGKNESLEKVS--SLTAQLESTKEMLRKVVEELTAKKMT- 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 615 dvvrddillLKNEIQVLQQQNQELKETEGKLRNTNQDLcNQMRQMV----QDFDHDKQEAVDRceRTYQQHHEAMKTQIR 690
Cdd:pfam15921 491 ---------LESSERTVSDLTASLQEKERAIEATNAEI-TKLRSRVdlklQELQHLKNEGDHL--RNVQTECEALKLQMA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 691 ESLLAKHALEKQ-----QLFEAYERTHLQLRSELDKLNKEVTavqecylevcreKDNLELTLRKTTEKEQQTQEKIKEKL 765
Cdd:pfam15921 559 EKDKVIEILRQQienmtQLVGQHGRTAGAMQVEKAQLEKEIN------------DRRLELQEFKILKDKKDAKIRELEAR 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 766 IQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKcTIQQNLeQEKDIAIKGAMKKLEIEL-- 843
Cdd:pfam15921 627 VSDLELE-KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYE-VLKRNF-RNKSEEMETTTNKLKMQLks 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 844 ---ELKHCENITKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWE--EQHEVSVNKRISFaVSEAKEKWKSELENM- 917
Cdd:pfam15921 704 aqsELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQflEEAMTNANKEKHF-LKEEKNKLSQELSTVa 782
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 110347568 918 -RKNILPGkELeEKIHSLQKELELKNEEVPVVI-RAELAKARSEWNKEKQE-EIHRIQEQNEQDYRQF 982
Cdd:pfam15921 783 tEKNKMAG-EL-EVLRSQERRLKEKVANMEVALdKASLQFAECQDIIQRQEqESVRLKLQHTLDVKEL 848
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
639-1054 |
5.13e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 639 KETEGKLRNTNQDLcnqmrqmvqdfdhdkqeavDRCERTYQQhheaMKTQIREsllakhaLEKQQlfEAYERtHLQLRSE 718
Cdd:COG1196 175 EEAERKLEATEENL-------------------ERLEDILGE----LERQLEP-------LERQA--EKAER-YRELKEE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 719 LDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQv 798
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAELAR- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 799 TTSDVISKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELPELAEYQA 878
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 879 LVKAEQKKW-EEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILpgKELEEKIHSLQKELELKNEEVPVVIRAELAKAR 957
Cdd:COG1196 380 ELEELAEELlEALRAAAELAAQLEELEEAEEALLERLERLEEELE--ELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 958 SEWNKEKQEEIHRIQEQNEQDYRQfLDDHRNKINEVLAAAKEdfMKQKTELLLQKETELQTcLDQSRREWtmQEAKRIQL 1037
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAE-LLEELAEAAARLLLLLE--AEADYEGFLEGVKAALL-LAGLRGLA--GAVAVLIG 531
|
410
....*....|....*..
gi 110347568 1038 EIYQYEEDILTVLGVLL 1054
Cdd:COG1196 532 VEAAYEAALEAALAAAL 548
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
345-1007 |
5.65e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 5.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 345 DLHHSESLQRAReqheSIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLT 424
Cdd:pfam05483 69 DFENSEGLSRLY----SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENK 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 425 RSLEESQ--KQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELkDEISLYESAAKLGIHPSDSEGELN 502
Cdd:pfam05483 145 DLIKENNatRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAF-EELRVQAENARLEMHFKLKEDHEK 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 503 IE-LTESYVdlgiKKVNWKKSKVTSIVQEEDPNEELSKD-EFIL------------KLKAEVQRLLGSNSMKRHLVSQLQ 568
Cdd:pfam05483 224 IQhLEEEYK----KEINDKEKQVSLLLIQITEKENKMKDlTFLLeesrdkanqleeKTKLQDENLKELIEKKDHLTKELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 569 nDLKDCHKKIEDLHQVKKDEKSIEVETKTDTSEKPKNQLW----PESSTSDVVRDDILLLKNEIQVLQQQNQELKETEGK 644
Cdd:pfam05483 300 -DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEelnkAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQ 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 645 LRNTNQDLCNQMRQM--VQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQ----LFEAYERT--HLQLR 716
Cdd:pfam05483 379 LKIITMELQKKSSELeeMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQelifLLQAREKEihDLEIQ 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 717 SELDKLNKE--VTAVQECYLEVCREK-DNLELT------LRKTTEKEQQTQEKIKEKLIQQLE----KEWQSKLDQTIKA 783
Cdd:pfam05483 459 LTAIKTSEEhyLKEVEDLKTELEKEKlKNIELTahcdklLLENKELTQEASDMTLELKKHQEDiincKKQEERMLKQIEN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 784 MKKKTLDCGSQTDQVttsdvisKKEMAIMIEEQKCTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEiavqnAH 863
Cdd:pfam05483 539 LEEKEMNLRDELESV-------REEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE-----NK 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 864 QRWLGELPElaEYQALVK--AEQKKWEEQHEVSVNKrISFAVSEAKEKWKSELENMRKNILPGKELEEKIH--------- 932
Cdd:pfam05483 607 NKNIEELHQ--ENKALKKkgSAENKQLNAYEIKVNK-LELELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakai 683
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 933 -----SLQKELELKNEEVPVVIRAELAKARSEWNKEKQEE-----IHRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFM 1002
Cdd:pfam05483 684 adeavKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERdselgLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
....*
gi 110347568 1003 KQKTE 1007
Cdd:pfam05483 764 IEKEE 768
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
664-1243 |
5.66e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 664 DHDKQEAVDRCERTYQQHHEAMKTQiresllAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNL 743
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAE------EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 744 ELT--LRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDqtikAMKKKTLDcGSQTDQVTTSDVISKKEMAIMIEEQKCTIQ 821
Cdd:PTZ00121 1296 KKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEE-AKKAAEAAKAEAEAAADEAEAAEEKAEAAE 1370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 822 QNLEQEKDIAiKGAMKKLEielELKHCENITKQVEIAVQNAHqrwlgELPELAEYQALVKAEQKKWEEQHEVSVNKRISF 901
Cdd:PTZ00121 1371 KKKEEAKKKA-DAAKKKAE---EKKKADEAKKKAEEDKKKAD-----ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 902 AVSEAKEKwKSELENMRKNILPGKELEEKIHSlqKELELKNEEVPvviRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQ 981
Cdd:PTZ00121 1442 EAKKADEA-KKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAK---KADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 982 FLDDHRNKINEVLAAAKedfmKQKTELLLQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsdTQKEH 1061
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEE----AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL------RKAEE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 1062 ISDSEDKQLLEIMSTCSS-KWMSVQYFEKLKGCIQKAFQDTLPLLVENADPEWKKRNMAELSKDSASQGTGQGDPGPAAg 1140
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEeKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA- 1664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 1141 hhaqplalqATEAEAEENNKVVEELIEENNDMKNKLEELQTLCKTPPRSLSAGAIENAclpcSGGALEELRGQyiKAVKK 1220
Cdd:PTZ00121 1665 ---------EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE----EKKKAEELKKA--EEENK 1729
|
570 580
....*....|....*....|...
gi 110347568 1221 IKCDMLRYIQESKERAAEMVKAE 1243
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKD 1752
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
247-412 |
6.05e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 247 AKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRE-SQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQM 325
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 326 IKKSRTTEMALESLKQQLVDLHhsESLQRAREQHESIVMGLTKKYEEqvlslqknLDATVTALKEQEDicsRLKDHVKQL 405
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE--------AEAALRDLRRELR---ELEAEIASL 431
|
....*..
gi 110347568 406 ERNQEAI 412
Cdd:COG4913 432 ERRKSNI 438
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
237-384 |
9.65e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 9.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKD--EKDGLTLSLRESQKLFQNGKEREIQLEAQ------- 307
Cdd:COG3206 206 GLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAqlGSGPDALPELLQSPVIQQLRAQLAELEAElaelsar 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 308 -------IKALETQIQALKVNEEQMIKKSR-TTEMALESLKQQLvdlhhsESLQRAREQHESIVMGLTKKyEEQVLSLQK 379
Cdd:COG3206 286 ytpnhpdVIALRAQIAALRAQLQQEAQRILaSLEAELEALQARE------ASLQAQLAQLEARLAELPEL-EAELRRLER 358
|
....*
gi 110347568 380 NLDAT 384
Cdd:COG3206 359 EVEVA 363
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
242-439 |
2.59e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 242 QVLNK-AKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRE--SQKLFQNGKEREIQLEAQIKALETQIQAL 318
Cdd:COG3206 152 AVANAlAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 319 KVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVM---GLTKKYEE---QVLSLQKNLDATVTALK-EQ 391
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAelaELSARYTPnhpDVIALRAQIAALRAQLQqEA 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110347568 392 EDICSRLKDHVKQLERNQEAIKLEKTEI-------------INKLTRSLEESQKQCAHLLQ 439
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLearlaelpeleaeLRRLEREVEVARELYESLLQ 372
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
743-1045 |
2.64e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 743 LELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQ 822
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 823 NLEQEKDIAikgAMKKLEIELELKHCENItKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSvnKRISFA 902
Cdd:pfam17380 355 QEERKRELE---RIRQEEIAMEISRMREL-ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM--EQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 903 VSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEvpvviraELAKARSEWNKEKQEEiHRIQEQNEQDYRQF 982
Cdd:pfam17380 429 QEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEE-------ERKRKKLELEKEKRDR-KRAEEQRRKILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 110347568 983 LDDHRNKINEVLAAAK--EDFMKQKTELLLQKEtELQTCLDQSRREWTMQEAKRIQLEIYQYEED 1045
Cdd:pfam17380 501 LEERKQAMIEEERKRKllEKEMEERQKAIYEEE-RRREAEEERRKQQEMEERRRIQEQMRKATEE 564
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
239-420 |
3.09e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.59 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 239 IQLQVLNKAKER------QLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQlEAQIKAlE 312
Cdd:PRK00409 499 LPENIIEEAKKLigedkeKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE-EAEKEA-Q 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 313 TQIQALKVNEEQMIKKSRTTE-MALESLK-QQLVDLH---------HSESLQRAREQHESIVMGLTKKYEE-----QVLS 376
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQkGGYASVKaHELIEARkrlnkanekKEKKKKKQKEKQEELKVGDEVKYLSlgqkgEVLS 656
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 110347568 377 LQKNLDATVtalkeQEDICsRLKDHVKQLERNQEAIKLEKTEII 420
Cdd:PRK00409 657 IPDDKEAIV-----QAGIM-KMKVPLSDLEKIQKPKKKKKKKPK 694
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
203-1124 |
3.37e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 203 QNNGSPAQEITGSDTFEGLQQQFLGANEN-------SAENMQIIQLQVlnkakERQLENLIEKLNESERQIRYLNHQLVI 275
Cdd:TIGR01612 516 KPDEVPSKNIIGFDIDQNIKAKLYKEIEAglkesyeLAKNWKKLIHEI-----KKELEEENEDSIHLEKEIKDLFDKYLE 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 276 IKDEK---DGLTLSLRESQKLFQNGKE---REIQLEAQIKALETQIQAL-KVNEEQMIKKSRTTEMALESLKQQLVDLHH 348
Cdd:TIGR01612 591 IDDEIiyiNKLKLELKEKIKNISDKNEyikKAIDLKKIIENNNAYIDELaKISPYQVPEHLKNKDKIYSTIKSELSKIYE 670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 349 SEslqrareqhesivmgLTKKYEEQVLSLQKNLDATVTALKEQEDICSRL-KDHVKQLERNQEAIKLEKTEI---INKLT 424
Cdd:TIGR01612 671 DD---------------IDALYNELSSIVKENAIDNTEDKAKLDDLKSKIdKEYDKIQNMETATVELHLSNIenkKNELL 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 425 RSLEESQKQcahlLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISLYESAAKLGI---HPSDSEGEL 501
Cdd:TIGR01612 736 DIIVEIKKH----IHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQInidNIKDEDAKQ 811
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 502 NIELTESYvdlgIKKVNWKKSKVTSIVQEEdpneELSKDEFILKLKAEV-------QRLLGSNSMKRHLVSQLQND---- 570
Cdd:TIGR01612 812 NYDKSKEY----IKTISIKEDEIFKIINEM----KFMKDDFLNKVDKFInfennckEKIDSEHEQFAELTNKIKAEisdd 883
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 571 -LKDCHKKIEDLHQ-VKKDEKSIEVETKT-DTSEKPKNQLWPESSTSDVV-----RDDIL--LLKNEIQVLQQQNQELKE 640
Cdd:TIGR01612 884 kLNDYEKKFNDSKSlINEINKSIEEEYQNiNTLKKVDEYIKICENTKESIekfhnKQNILkeILNKNIDTIKESNLIEKS 963
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 641 TEGKLRNTNQDLCNQMRQMVQDFDHDKQEAvdrcertyqQHHEAMK--TQIRESLLAKHALEKQQLFEAYERTHLQLRSE 718
Cdd:TIGR01612 964 YKDKFDNTLIDKINELDKAFKDASLNDYEA---------KNNELIKyfNDLKANLGKNKENMLYHQFDEKEKATNDIEQK 1034
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 719 LDKLNKEVTAVQ-ECYLEVCREKDNLELTLRKTTE-------KEQQTQ----EKIKEKL----IQQLEKEWQSKLDQTIK 782
Cdd:TIGR01612 1035 IEDANKNIPNIEiAIHTSIYNIIDEIEKEIGKNIEllnkeilEEAEINitnfNEIKEKLkhynFDDFGKEENIKYADEIN 1114
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 783 AMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQqNLEQEKDIAIKGAMKKlEIElelKHCENITKQVEIA--VQ 860
Cdd:TIGR01612 1115 KIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQIN-DLEDVADKAISNDDPE-EIE---KKIENIVTKIDKKknIY 1189
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 861 NAHQRWLGELPELAEYQALVKaEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQKELEL 940
Cdd:TIGR01612 1190 DEIKKLLNEIAEIEKDKTSLE-EVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGI 1268
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 941 K---NEEVPVV-IRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHR-NKINEVLAAAKEDFMKQKTE--LLLQKE 1013
Cdd:TIGR01612 1269 EmdiKAEMETFnISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDiNDIKKELQKNLLDAQKHNSDinLYLNEI 1348
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 1014 TELQTCLDQSRREWTMQEAKRIQLEIYQYEEDILTVLgvllsDTQKEHISDSEDKQLLEimsTCSSKWMSVQYFEKLKGC 1093
Cdd:TIGR01612 1349 ANIYNILKLNKIKKIIDEVKEYTKEIEENNKNIKDEL-----DKSEKLIKKIKDDINLE---ECKSKIESTLDDKDIDEC 1420
|
970 980 990
....*....|....*....|....*....|.
gi 110347568 1094 IQKAFQDTLPLLVENADPEWKKRNMAELSKD 1124
Cdd:TIGR01612 1421 IKKIKELKNHILSEESNIDTYFKNADENNEN 1451
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
632-974 |
3.37e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 632 QQQNQELKETEGKLRNTNQDLCNQM--RQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIREsllakhaLEKQQLFEAye 709
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVerRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERE-------LERIRQEER-- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 710 rthlqlRSELDKLNKEVTAVQecyLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIqqLEKEWQSKLDQTIKAMKKktl 789
Cdd:pfam17380 359 ------KRELERIRQEEIAME---ISRMRELERLQMERQQKNERVRQELEAARKVKI--LEEERQRKIQQQKVEMEQ--- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 790 dcgsqtdqvttsdVISKKEMAIMIEEQKctiqqnLEQEKDIAIKgamKKLEIELELKHcenitkQVEIAVQNAHQRWLGE 869
Cdd:pfam17380 425 -------------IRAEQEEARQREVRR------LEEERAREME---RVRLEEQERQQ------QVERLRQQEEERKRKK 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 870 LPELAEyqalvKAEQKKWEEQHEVSVNKrisfavsEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKneevpvvi 949
Cdd:pfam17380 477 LELEKE-----KRDRKRAEEQRRKILEK-------ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRR-------- 536
|
330 340
....*....|....*....|....*.
gi 110347568 950 raelaKARSEWNKEKQ-EEIHRIQEQ 974
Cdd:pfam17380 537 -----EAEEERRKQQEmEERRRIQEQ 557
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
246-429 |
3.39e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 246 KAKERQLENLIEKLNESERQIRYLnhqlviiKDEKDGLTLSLRESQKLFQ--------NGKEREI-QLEAQIKALET--- 313
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEyswdeidvASAEREIaELEAELERLDAssd 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 314 QIQALKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESIVMGLTKKYEEQVLSLQKNLDatvtALKEQED 393
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRL--EKELEQAEEELDELQDRLEAAEDLARLELRALLE----ERFAAAL 759
|
170 180 190
....*....|....*....|....*....|....*.
gi 110347568 394 ICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEE 429
Cdd:COG4913 760 GDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
369-1180 |
5.01e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 369 KYEEQVLSLQKNLDATVTALKeqedicsRLKDHVKQLERNQEAIKL--EKTEIINKLTRSLEESQKqcahllqsgsvqev 446
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLD-------RLEDILNELERQLKSLERqaEKAERYKELKAELRELEL-------------- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 447 aqlqfqlqqaqkahAMSANMNKALQEELTELKDEISLYESAAKlgihpsdsEGELNIELTESYVDLGIKKVNWKKSKVTS 526
Cdd:TIGR02168 228 --------------ALLVLRLEELREELEELQEELKEAEEELE--------ELTAELQELEEKLEELRLEVSELEEEIEE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 527 IVQEedpneelskdefILKLKAEVQRLlgsNSMKRHLVSQLQNDLKDCHKKIEDLHQVKKdeKSIEVETKTDTSEKPKNQ 606
Cdd:TIGR02168 286 LQKE------------LYALANEISRL---EQQKQILRERLANLERQLEELEAQLEELES--KLDELAEELAELEEKLEE 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 607 lwpesstsdvvrddillLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQD-FDHDKQEAVDRCERTYQqhhEAM 685
Cdd:TIGR02168 349 -----------------LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKvAQLELQIASLNNEIERL---EAR 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 686 KTQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKE-- 763
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQlq 488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 764 ---KLIQQLEKEwQSKLDQTIKAMKKKTLDCGSQTDQVttSDVISkkemaimieeqkctIQQNLEQEKDIAIKGAMKKLE 840
Cdd:TIGR02168 489 arlDSLERLQEN-LEGFSEGVKALLKNQSGLSGILGVL--SELIS--------------VDEGYEAAIEAALGGRLQAVV 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 841 IELElkhcENITKQVEIAVQNAHQRWLGELPELAEYQAL--VKAEQKKWEEQHEVSVNKRISFAvseakEKWKSELENMR 918
Cdd:TIGR02168 552 VENL----NAAKKAIAFLKQNELGRVTFLPLDSIKGTEIqgNDREILKNIEGFLGVAKDLVKFD-----PKLRKALSYLL 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 919 KNILPGKELEEKIHsLQKELELknEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQneqdyRQFLDDHRNKINEVLAAAK 998
Cdd:TIGR02168 623 GGVLVVDDLDNALE-LAKKLRP--GYRIVTLDGDLVRPGGVITGGSAKTNSSILER-----RREIEELEEKIEELEEKIA 694
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 999 E-----DFMKQKTELLLQKETELQTCLDQSRREWTMQEA--KRIQLEIYQYEEDILTVLGVLLSDTQKEHISDSEDKQLL 1071
Cdd:TIGR02168 695 ElekalAELRKELEELEEELEQLRKELEELSRQISALRKdlARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 1072 EIMSTCSSKWMSVQyfEKLKGCIQKAFQDTLPLLVENADpewkkrnMAELSKDSASQGTGQGDpgPAAGHHAQPLALQAT 1151
Cdd:TIGR02168 775 EELAEAEAEIEELE--AQIEQLKEELKALREALDELRAE-------LTLLNEEAANLRERLES--LERRIAATERRLEDL 843
|
810 820
....*....|....*....|....*....
gi 110347568 1152 EAEAEENNKVVEELIEENNDMKNKLEELQ 1180
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEELEELIEELE 872
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
333-1017 |
7.21e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 7.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 333 EMALESLKQQLVDLHhsESLQRAREQHE-------SIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQL 405
Cdd:pfam15921 77 ERVLEEYSHQVKDLQ--RRLNESNELHEkqkfylrQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 406 ernqEAIKLEKTEIINKLTRSLEESQKqcAHLLQSGSVQE-----VAQLQFQLQQAQKAHAMSA----NMNKALQEELTE 476
Cdd:pfam15921 155 ----EAAKCLKEDMLEDSNTQIEQLRK--MMLSHEGVLQEirsilVDFEEASGKKIYEHDSMSTmhfrSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 477 LKDEIS-----LYESAAKLGIHPSDSEGELNIELTE---------SYVDLGIKKVNWKKSKVTS----------IVQEED 532
Cdd:pfam15921 229 LDTEISylkgrIFPVEDQLEALKSESQNKIELLLQQhqdrieqliSEHEVEITGLTEKASSARSqansiqsqleIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 533 PNE------ELSKDE-FILKLKAEV---------------QRLLGSNS------MKRHLVSQLQNDLKD-CHKKIEDLHq 583
Cdd:pfam15921 309 RNQnsmymrQLSDLEsTVSQLRSELreakrmyedkieeleKQLVLANSeltearTERDQFSQESGNLDDqLQKLLADLH- 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 584 vkKDEKSIEVETKTDtsekpkNQLWPESSTSDVVRDDillLKNEiqvLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDF 663
Cdd:pfam15921 388 --KREKELSLEKEQN------KRLWDRDTGNSITIDH---LRRE---LDDRNMEVQRLEALLKAMKSECQGQMERQMAAI 453
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 664 dHDKQEAVDRCERTYQQhHEAMKTQIREslLAKHALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQEcylEVCREKDNL 743
Cdd:pfam15921 454 -QGKNESLEKVSSLTAQ-LESTKEMLRK--VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNA---EITKLRSRV 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 744 ELTLRK----TTEKE--QQTQEKIKEKLIQQLEKEwqsKLDQTIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQK 817
Cdd:pfam15921 527 DLKLQElqhlKNEGDhlRNVQTECEALKLQMAEKD---KVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 818 CTIQQ--NLEQEKDIAIKGAMKKL-EIELE-----------LKHCENItKQVEIAVQNAHQRWLGELPELAEYQALVKAE 883
Cdd:pfam15921 604 LELQEfkILKDKKDAKIRELEARVsDLELEkvklvnagserLRAVKDI-KQERDQLLNEVKTSRNELNSLSEDYEVLKRN 682
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 884 QKKWEEQHEVSVNKrISFAVSEAkekwKSELENMRkNILPGKELEEKiHSLQkelelkneeVPVVIRAELAKARSEWNKe 963
Cdd:pfam15921 683 FRNKSEEMETTTNK-LKMQLKSA----QSELEQTR-NTLKSMEGSDG-HAMK---------VAMGMQKQITAKRGQIDA- 745
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 110347568 964 KQEEIHRIQE--QNEQDYRQFLDDHRNKINEVLA--AAKEDFMKQKTELLLQKETELQ 1017
Cdd:pfam15921 746 LQSKIQFLEEamTNANKEKHFLKEEKNKLSQELStvATEKNKMAGELEVLRSQERRLK 803
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
468-725 |
1.61e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 468 KALQEELTELKDEIS-LYESAAKLgihpsdsEGELNIELTESYVDLGIKKVNWKKSKVTSIVQEedpneelskdefILKL 546
Cdd:COG4913 613 AALEAELAELEEELAeAEERLEAL-------EAELDALQERREALQRLAEYSWDEIDVASAERE------------IAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 547 KAEVQRLLGSNSMKRHL---VSQLQNDLKDCHKKIEDL-HQVKKDEKSIEV------ETKTDTSEKPKNQLWPESSTSDV 616
Cdd:COG4913 674 EAELERLDASSDDLAALeeqLEELEAELEELEEELDELkGEIGRLEKELEQaeeeldELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 617 VRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCE--RTYQQHHEamktQIRESLL 694
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLEslPEYLALLD----RLEEDGL 829
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 110347568 695 AKHaleKQQLFEA------YERTHL--QLRSE-------LDKLNKE 725
Cdd:COG4913 830 PEY---EERFKELlnensiEFVADLlsKLRRAireikerIDPLNDS 872
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
468-1039 |
1.69e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 468 KALQEELTELKDEISLYEsaaklgihpsDSEGELNIELTESYVDLGIKKvnwKKSKVTSIVQEEDPNEELSKDefILKLK 547
Cdd:COG1196 216 RELKEELKELEAELLLLK----------LRELEAELEELEAELEELEAE---LEELEAELAELEAELEELRLE--LEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 548 AEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDLhQVKKDEKSIEVETKTDTSEKpknqlwpesstsdvVRDDILLLKNE 627
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRREL-EERLEELEEELAELEEELEE--------------LEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 628 IQVLQQQNQELKETEGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEA 707
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 708 YERTHLQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEKEQQTQEKIKEKLIQQLEKEWQSKLDQ-------- 779
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeaeadyeg 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 780 ---TIKAMKKKTLDCGSQTDQVTTSDVISKKEMAIMIEEQKCTIQQNLEQEKD--IAIKGAMKKLEIELELKHCENITKQ 854
Cdd:COG1196 506 fleGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVaaAAIEYLKAAKAGRATFLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 855 veiAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRK---------NILPGK 925
Cdd:COG1196 586 ---AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRevtlegeggSAGGSL 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 926 ELEEKIHSLQKELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQK 1005
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
570 580 590
....*....|....*....|....*....|....
gi 110347568 1006 TELLLQKETELQTCLDQSRREWTMQEAKRIQLEI 1039
Cdd:COG1196 743 EEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
216-810 |
1.75e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 216 DTFEGLQQQFLGANENSAE-NMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLF 294
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEaRTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRREL 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 295 QNGKEREIQLEAQIKALETQIQAlkvneeQMIKKSRTTEMALESLkqqlvdlhhsESLQRAREQHESIVMGLTKKYEEqv 374
Cdd:pfam15921 422 DDRNMEVQRLEALLKAMKSECQG------QMERQMAAIQGKNESL----------EKVSSLTAQLESTKEMLRKVVEE-- 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 375 lslqknLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQkqcaHLLQSGS-VQEVAQLQFQL 453
Cdd:pfam15921 484 ------LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ----HLKNEGDhLRNVQTECEAL 553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 454 QQAQKAHAMSANMNKALQEELTELKDEISlyESAAKLGIHPSDSEGELN---IELTEsyvdlgIKKVNWKKSKVTSIVQE 530
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLVGQHG--RTAGAMQVEKAQLEKEINdrrLELQE------FKILKDKKDAKIRELEA 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 531 EDPNEELSKDEFIlklKAEVQRLLGSNSMKRHLvSQLQNDLKDCHKKI----EDLHQVKKD--EKSIEVETktdTSEKPK 604
Cdd:pfam15921 626 RVSDLELEKVKLV---NAGSERLRAVKDIKQER-DQLLNEVKTSRNELnslsEDYEVLKRNfrNKSEEMET---TTNKLK 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 605 NQLwpESSTSDvvrddilllkneiqvLQQQNQELKETEGKLRNTNQDLCNQMRQMVQdfdhdKQEAVDRCERTYQQHHEA 684
Cdd:pfam15921 699 MQL--KSAQSE---------------LEQTRNTLKSMEGSDGHAMKVAMGMQKQITA-----KRGQIDALQSKIQFLEEA 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 685 MKTQIREsllaKHALEKQQLFEAYERThlQLRSELDKLNKEVTAVQECYLEVCREKDNLELTLRKTTEK--------EQQ 756
Cdd:pfam15921 757 MTNANKE----KHFLKEEKNKLSQELS--TVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQfaecqdiiQRQ 830
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 110347568 757 TQEKIKEKLIQQLE-KEWQSKLDQTIKAMKKKTLDCGSQTDqvTTSDVISKKEMA 810
Cdd:pfam15921 831 EQESVRLKLQHTLDvKELQGPGYTSNSSMKPRLLQPASFTR--THSNVPSSQSTA 883
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
237-844 |
1.89e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 237 QIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQL-----VIIKDEKDGLTLS--LRESQKLFQNGKEREIQLEAQIK 309
Cdd:pfam01576 413 QLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegKNIKLSKDVSSLEsqLQDTQELLQEETRQKLNLSTRLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 310 ALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHS--------ESLQRAREQHESIVMGLTKKYEEQVLS----- 376
Cdd:pfam01576 493 QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKleedagtlEALEEGKKRLQRELEALTQQLEEKAAAydkle 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 377 -----LQKNLDATVTALKEQEDICSRLKDHVKQL----------------ERNQ-EAIKLEKTEIINKLTRSLEESQKQC 434
Cdd:pfam01576 573 ktknrLQQELDDLLVDLDHQRQLVSNLEKKQKKFdqmlaeekaisaryaeERDRaEAEAREKETRALSLARALEEALEAK 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 435 AHLLQSGSVQEVAQLQFQLQQ----------AQKAHAMSANMNKaLQEELTELKDEISLYESAaklgihpsdsegELNIE 504
Cdd:pfam01576 653 EELERTNKQLRAEMEDLVSSKddvgknvhelERSKRALEQQVEE-MKTQLEELEDELQATEDA------------KLRLE 719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 505 ltesyVDLGIKKVNWKKSKVTSIVQEEDPNEELSKD--EFILKLKAE-VQRLLGSNSMKrhlvsQLQNDLKDCHKKIEDL 581
Cdd:pfam01576 720 -----VNMQALKAQFERDLQARDEQGEEKRRQLVKQvrELEAELEDErKQRAQAVAAKK-----KLELDLKELEAQIDAA 789
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 582 HQVKkdEKSIEVETKTDTSEKpknQLWPESSTSDVVRDDILLLKneiqvlqqqnqelKETEGKLRNTNQDLCnqmrQMVQ 661
Cdd:pfam01576 790 NKGR--EEAVKQLKKLQAQMK---DLQRELEEARASRDEILAQS-------------KESEKKLKNLEAELL----QLQE 847
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 662 DFdhdkqEAVDRCERTYQQHHEAMKTQIRESLLAKHAL--EKQQLfeayERTHLQLRSELDKLNKEVTAVQECYLEVCRE 739
Cdd:pfam01576 848 DL-----AASERARRQAQQERDELADEIASGASGKSALqdEKRRL----EARIAQLEEELEEEQSNTELLNDRLRKSTLQ 918
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 740 KDNL--ELTLRKTTEKE-----QQTQEKIKE---KLiQQLEKEWQSKLDQTIKAMKKKTLDCGSQTDQVTTSDVISK--- 806
Cdd:pfam01576 919 VEQLttELAAERSTSQKsesarQQLERQNKElkaKL-QEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANklv 997
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 110347568 807 -------KEMAIMIEEQKctiqQNLEQEKDIAIKGA--MKKLEIELE 844
Cdd:pfam01576 998 rrtekklKEVLLQVEDER----RHADQYKDQAEKGNsrMKQLKRQLE 1040
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
903-1038 |
5.37e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 903 VSEAKEKwksELENMRKNILPGKELEEKIHSLQKELELKNEevpvviraeLAKARSEWNKEKQEEIHRIQEQNE--QDYR 980
Cdd:PRK12704 28 IAEAKIK---EAEEEAKRILEEAKKEAEAIKKEALLEAKEE---------IHKLRNEFEKELRERRNELQKLEKrlLQKE 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 110347568 981 QFLDDHRNKIN--EVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE------WTMQEAKRIQLE 1038
Cdd:PRK12704 96 ENLDRKLELLEkrEEELEKKEKELEQKQQELEKKEEELEELIEEQLQElerisgLTAEEAKEILLE 161
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
246-445 |
5.45e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 246 KAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKlfqngkerEI-QLEAQIKALETQIQALKVNEEQ 324
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQA--------EIdKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 325 MIKKSRTTEMALESLkQQLVDlhhSESLQRA--REQHESIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHV 402
Cdd:COG3883 91 RARALYRSGGSVSYL-DVLLG---SESFSDFldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 110347568 403 KQLERNQEAIKLEKTEIINKLTRSLEESQKQCAHLLQSGSVQE 445
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
250-429 |
5.56e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 250 RQLENLIEKLNESerqirylNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQMIKKS 329
Cdd:COG4913 671 AELEAELERLDAS-------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 330 RT--TEMALESLKQQLVDLHHSE----------SLQRAREQHESIVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSR 397
Cdd:COG4913 744 RLelRALLEERFAAALGDAVERElrenleeridALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDR 823
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 110347568 398 LKDHvkQLERNQEAIKL--------EKTEIINKLTRSLEE 429
Cdd:COG4913 824 LEED--GLPEYEERFKEllnensieFVADLLSKLRRAIRE 861
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
248-433 |
5.56e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 41.47 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 248 KERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQAL--------- 318
Cdd:pfam15818 220 KEQKFQELQERLNMELELNKKINEEITHIQEEKQDIIISFQHMQQLLQQQTQANTEMEAELKALKENNQTLerdnelqre 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 319 --KVNEEQMIKKSRTTEMALESLKQQLVDLHHS-----ESLQRAREQHESIVMGLTKKYEEQVLSLQKNLDATVTALKEQ 391
Cdd:pfam15818 300 kvKENEEKFLNLQNEHEKALGTWKKHVEELNGEineikNELSSLKETHIKLQEHYNKLCNQKKFEEDKKFQNVPEVNNEN 379
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 110347568 392 EDICS-RLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQ 433
Cdd:pfam15818 380 SEMSTeKSENLIIQKYNSEQEIREENTKSFCSDTEYRETEKKK 422
|
|
| LCD1 |
pfam09798 |
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. ... |
240-355 |
6.30e-03 |
|
DNA damage checkpoint protein; This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe this protein is called Rad26 and in Saccharomyces cerevisiae it is called LCD1.
Pssm-ID: 462906 Cd Length: 615 Bit Score: 41.15 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 240 QLQVLNKAKERQLENLIEKLNES----ERQIRYLNHQLVIIKDEKDGLTLSLResqklfqngkereiQLEAQIKALETQI 315
Cdd:pfam09798 5 KLELLQQEKEKELEKLKNSYEELksshEEELEKLKQEVQKLEDEKKFLLNELR--------------SLSATSPASSQSH 70
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 110347568 316 QALKVNEEQM-IKKSRTTEMALESLKQQLVDLHHSESLQRA 355
Cdd:pfam09798 71 ETDTDDSSSVsLKKRKIEESTAESLKQKYIRLQNNRIVDET 111
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
217-889 |
6.37e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 217 TFEGLQQQFLGANENSAENMQIIQLQVLNK---AKERQLENLIEKLNESERQIRYLNHQlviikdekdgltlslresqkl 293
Cdd:TIGR00618 241 SHAYLTQKREAQEEQLKKQQLLKQLRARIEelrAQEAVLEETQERINRARKAAPLAAHI--------------------- 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 294 fqngkEREIQLEAQIKALETQIQalkvneEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIvmglTKKYEEQ 373
Cdd:TIGR00618 300 -----KAVTQIEQQAQRIHTELQ------SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHI----RDAHEVA 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 374 vlslqknldatvTALKEQEDICSRLKDHVKQLERNQEAIKlEKTEIINKLTRSLEESQKQCAHLLQSGSVQEVAQLQFQL 453
Cdd:TIGR00618 365 ------------TSIREISCQQHTLTQHIHTLQQQKTTLT-QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 454 QQAQKAHAMsANMNKALQEELTELKDEISLYESAAKlgihpSDSEGELNIELTESYvdlgIKKVNWKKSKVTSIVQEEDP 533
Cdd:TIGR00618 432 QQELQQRYA-ELCAAAITCTAQCEKLEKIHLQESAQ-----SLKEREQQLQTKEQI----HLQETRKKAVVLARLLELQE 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 534 NEELSKdEFILKLKAEVQRLLGSNSMKRHL------VSQLQNDLKDC-HKKIEDLHQVKKDEKSIEVEtktDTSEKPKNQ 606
Cdd:TIGR00618 502 EPCPLC-GSCIHPNPARQDIDNPGPLTRRMqrgeqtYAQLETSEEDVyHQLTSERKQRASLKEQMQEI---QQSFSILTQ 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 607 LWPESStsdvvrDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlcnQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMK 686
Cdd:TIGR00618 578 CDNRSK------EDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA---LLRKLQPEQDLQDVRLHLQQCSQELALKLTAL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 687 TQIRESLLAK----HALEKQQLFEAYERTHLQLRSELDKLNKEVTAVQEcYLEVCREKDNLELTLRKTTEKEQQTQEKIK 762
Cdd:TIGR00618 649 HALQLTLTQErvreHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE-MLAQCQTLLRELETHIEEYDREFNEIENAS 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 763 EKLIQQLEKEwQSKLDQTIKAMKK--KTLDCGSQTDQvttsdviSKKEMAIMIEEQKCTIQQNLEQEKDIAIKG------ 834
Cdd:TIGR00618 728 SSLGSDLAAR-EDALNQSLKELMHqaRTVLKARTEAH-------FNNNEEVTAALQTGAELSHLAAEIQFFNRLreedth 799
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 110347568 835 --AMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELPELAEYQALVKAEQKKWEE 889
Cdd:TIGR00618 800 llKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE 856
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
235-422 |
6.63e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 235 NMQIIQLQVLNKAKERQLENLIEKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQ 314
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 315 IQaLKVNEEQMIKKSRTTEMA-LESLKQQLVDLHHS-ESLQRAREQHESIVMGLTKKYEeqvlSLQKNLDATVTALKEQE 392
Cdd:TIGR04523 421 KE-LLEKEIERLKETIIKNNSeIKDLTNQDSVKELIiKNLDNTRESLETQLKVLSRSIN----KIKQNLEQKQKELKSKE 495
|
170 180 190
....*....|....*....|....*....|
gi 110347568 393 DICSRLKDHVKQLERNQEAIKLEKTEIINK 422
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKEK 525
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
588-790 |
7.67e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 7.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 588 EKSIEVETKTDTSEKPKNQLWPESSTS-----------DVVRDDILLLKNEIQVLQQQNQELKETEGKLRNTNQDlCNQM 656
Cdd:PLN02939 191 QEKIHVEILEEQLEKLRNELLIRGATEglcvhslskelDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKE-RSLL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 657 RQMVQDFDH---DKQEAVDRCErTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHlQLRSELDKLnKEVTAVQECY 733
Cdd:PLN02939 270 DASLRELESkfiVAQEDVSKLS-PLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQ-DLRDKVDKL-EASLKEANVS 346
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 110347568 734 LEVCREKDNLELTLRKTTEKEQQTQEKIKE--KLIQQLEKEWQSKLDQTIKAMKKKTLD 790
Cdd:PLN02939 347 KFSSYKVELLQQKLKLLEERLQASDHEIHSyiQLYQESIKEFQDTLSKLKEESKKRSLE 405
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
755-1026 |
7.79e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 7.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 755 QQTQEKI--KEKLIQQLEKEWQsKLDQTIKAMKKktldcgsQTDQVttsdviskkemaimiEEQKCTIQQNLE-QEKDIA 831
Cdd:COG4913 606 FDNRAKLaaLEAELAELEEELA-EAEERLEALEA-------ELDAL---------------QERREALQRLAEySWDEID 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 832 IKGAMKKL-EIELELKHCEN-------ITKQVEiAVQNAHQRWLGELPELAEYQALVKAEQKKWEEQHEvSVNKRISFAV 903
Cdd:COG4913 663 VASAEREIaELEAELERLDAssddlaaLEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 904 SEAKEKWKSELENMRKNILPGKELEEKIHSLQKELELKNEEVpVVIRAELAKARSEWNKEKQEEIHRIQEQNEqDYRQFL 983
Cdd:COG4913 741 DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL-NRAEEELERAMRAFNREWPAETADLDADLE-SLPEYL 818
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 110347568 984 DDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE 1026
Cdd:COG4913 819 ALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIRE 861
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
305-487 |
8.40e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 305 EAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKyEEQVLSLQKNlDAT 384
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEL-EAELERLDAS-SDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 385 VTALKEQEDicsRLKDHVKQLERNQEAIKLEKTEIINKLTRsLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHAMSA 464
Cdd:COG4913 687 LAALEEQLE---ELEAELEELEEELDELKGEIGRLEKELEQ-AEEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|....*.
gi 110347568 465 NMN---KALQEELTELKDEISLYESA 487
Cdd:COG4913 763 VERelrENLEERIDALRARLNRAEEE 788
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
251-333 |
9.60e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 40.62 E-value: 9.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110347568 251 QLENLIEKLNESERQIRYLNHQLVIIkdekDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQMIKKSR 330
Cdd:PRK05563 325 RLYRMIDILNDAQQQIKWTNQPRIYL----EVALVKLCEQAAASPEYDTELEVLLQRVEQLEQELKQLKAQPVGVAPEQK 400
|
...
gi 110347568 331 TTE 333
Cdd:PRK05563 401 EKK 403
|
|
| |
