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Conserved domains on  [gi|7662158|ref|NP_055991|]
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F-box only protein 28 isoform a [Homo sapiens]

Protein Classification

F-box only protein 28( domain architecture ID 17778309)

F-box only protein 28 (FBXO28) may recognize and bind to some phosphorylated proteins and promotes their ubiquitination and degradation

CATH:  1.20.1280.50
Gene Ontology:  GO:0005515|GO:0000209
PubMed:  31898225|11178263
SCOP:  4001927

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
F-box_FBXO28 cd22100
F-box domain found in F-box only protein 28 (FBXO28) and similar proteins; FBXO28, also called ...
64-108 2.97e-20

F-box domain found in F-box only protein 28 (FBXO28) and similar proteins; FBXO28, also called FBX28, is part of an SCF (SKP1-cullin-F-box) protein ligase complex. It probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. It promotes mitotic progression and regulates topoisomerase IIalpha-dependent DNA decatenation. FBXO28 plays a crucial role in the pathogenesis of the 1q41q42 microdeletion syndrome. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 438872  Cd Length: 45  Bit Score: 82.98  E-value: 2.97e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 7662158   64 LVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLK 108
Cdd:cd22100   1 LLELPDEIIEKILSYLSYDEISKLRLVCRRFNEVCQRILNQGFKK 45
 
Name Accession Description Interval E-value
F-box_FBXO28 cd22100
F-box domain found in F-box only protein 28 (FBXO28) and similar proteins; FBXO28, also called ...
64-108 2.97e-20

F-box domain found in F-box only protein 28 (FBXO28) and similar proteins; FBXO28, also called FBX28, is part of an SCF (SKP1-cullin-F-box) protein ligase complex. It probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. It promotes mitotic progression and regulates topoisomerase IIalpha-dependent DNA decatenation. FBXO28 plays a crucial role in the pathogenesis of the 1q41q42 microdeletion syndrome. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438872  Cd Length: 45  Bit Score: 82.98  E-value: 2.97e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 7662158   64 LVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLK 108
Cdd:cd22100   1 LLELPDEIIEKILSYLSYDEISKLRLVCRRFNEVCQRILNQGFKK 45
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
67-94 8.84e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 36.75  E-value: 8.84e-04
                          10        20
                  ....*....|....*....|....*...
gi 7662158     67 LPIVAIENILSFMSYDEISQLRLVCKRM 94
Cdd:pfam00646   4 LPDDLLLEILSRLDPKDLLRLSLVSKRW 31
 
Name Accession Description Interval E-value
F-box_FBXO28 cd22100
F-box domain found in F-box only protein 28 (FBXO28) and similar proteins; FBXO28, also called ...
64-108 2.97e-20

F-box domain found in F-box only protein 28 (FBXO28) and similar proteins; FBXO28, also called FBX28, is part of an SCF (SKP1-cullin-F-box) protein ligase complex. It probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. It promotes mitotic progression and regulates topoisomerase IIalpha-dependent DNA decatenation. FBXO28 plays a crucial role in the pathogenesis of the 1q41q42 microdeletion syndrome. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438872  Cd Length: 45  Bit Score: 82.98  E-value: 2.97e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 7662158   64 LVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLK 108
Cdd:cd22100   1 LLELPDEIIEKILSYLSYDEISKLRLVCRRFNEVCQRILNQGFKK 45
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
67-94 8.84e-04

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 36.75  E-value: 8.84e-04
                          10        20
                  ....*....|....*....|....*...
gi 7662158     67 LPIVAIENILSFMSYDEISQLRLVCKRM 94
Cdd:pfam00646   4 LPDDLLLEILSRLDPKDLLRLSLVSKRW 31
F-box_SF cd09917
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ...
67-99 2.96e-03

F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.


Pssm-ID: 438852  Cd Length: 35  Bit Score: 35.11  E-value: 2.96e-03
                        10        20        30
                ....*....|....*....|....*....|...
gi 7662158   67 LPIVAIENILSFMSYDEISQLRLVCKRMDLVCQ 99
Cdd:cd09917   3 LPDEILLKILSYLDPRDLLRLSLVCKRWRELAS 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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