|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
106-323 |
2.40e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 85.76 E-value: 2.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 106 LDLQNNKIKEIKENDFKGLTSLYGLILNNNKltkihpkAFLTTKKLRRLYLSHNQLSEIPLNLP--KSLAELRIHENKVK 183
Cdd:COG4886 77 LSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELAnlTNLKELDLSNNQLT 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 184 KIQKDtFKGMNALHVLEMSANpldnngiepgafegvtvfhiriaeaKLTSVPKGLP--PTLLELHLDYNKISTVELEdFK 261
Cdd:COG4886 150 DLPEP-LGNLTNLKSLDLSNN-------------------------QLTDLPEELGnlTNLKELDLSNNQITDLPEP-LG 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 301069322 262 RYKELQRLGLGNNKITDIENgSLANIPRVREIHLENNKLKKIPSgLPELKYLQIIFLHSNSI 323
Cdd:COG4886 203 NLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQL 262
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
90-326 |
8.62e-16 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 78.97 E-value: 8.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 90 LGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYgliLNNNKLTKIhPKAFLTT-------------------KK 150
Cdd:PRK15370 188 LGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLY---ANSNQLTSI-PATLPDTiqemelsinritelperlpSA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 151 LRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSanpldnngiepgafegvtvfhiriaeak 230
Cdd:PRK15370 264 LQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS---------------------------- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 231 LTSVPKGLPPTLLELHLDYNKISTVElEDFKryKELQRLGLGNNKITDIENgSLAniPRVREIHLENNKLKKIPSGLP-E 309
Cdd:PRK15370 316 LTALPETLPPGLKTLEAGENALTSLP-ASLP--PELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPENLPaA 389
|
250
....*....|....*..
gi 301069322 310 LKYLQIIFlhsNSIARV 326
Cdd:PRK15370 390 LQIMQASR---NNLVRL 403
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
104-161 |
1.16e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 53.68 E-value: 1.16e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 301069322 104 RMLDLQNNKIKEIKENDFKGLTSLYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQL 161
Cdd:pfam13855 4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
85-324 |
8.09e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 55.18 E-value: 8.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 85 VHCSDLGLTSVPTNIPF-DTRMLDLQNNKIKEIKENDF-KGLTSLYgliLNNNKLTKIHPKAFLttKKLRRLYLSHNQLS 162
Cdd:cd21340 7 LYLNDKNITKIDNLSLCkNLKVLYLYDNKITKIENLEFlTNLTHLY---LQNNQIEKIENLENL--VNLKKLYLGGNRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 163 EIP-LNLPKSLAELRIhenkvkkiqkdtfkgmnalhvlemsanplDNNGIEPG---AFEGVTVFHIRiaeakltsvpkgl 238
Cdd:cd21340 82 VVEgLENLTNLEELHI-----------------------------ENQRLPPGeklTFDPRSLAALS------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 239 pPTLLELHLDYNKISTveLEDFKRYKELQRLGLGNNKITDIEN--GSLANIPRVREIHLENNKLKKIPsglpelKYLQII 316
Cdd:cd21340 120 -NSLRVLNISGNNIDS--LEPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCKKP------KYRDKI 190
|
....*...
gi 301069322 317 FLHSNSIA 324
Cdd:cd21340 191 ILASKSLE 198
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
73-103 |
3.37e-08 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 48.85 E-value: 3.37e-08
10 20 30
....*....|....*....|....*....|.
gi 301069322 73 MCPFGCQCYSRVVHCSDLGLTSVPTNIPFDT 103
Cdd:smart00013 1 ACPAPCNCSGTAVDCSGRGLTEVPLDLPPDT 31
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
73-100 |
4.33e-07 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 45.70 E-value: 4.33e-07
10 20
....*....|....*....|....*...
gi 301069322 73 MCPFGCQCYSRVVHCSDLGLTSVPTNIP 100
Cdd:pfam01462 1 ACPVPCHCSATVVNCSDRGLTAVPRDLP 28
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
106-323 |
2.40e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 85.76 E-value: 2.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 106 LDLQNNKIKEIKENDFKGLTSLYGLILNNNKltkihpkAFLTTKKLRRLYLSHNQLSEIPLNLP--KSLAELRIHENKVK 183
Cdd:COG4886 77 LSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELAnlTNLKELDLSNNQLT 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 184 KIQKDtFKGMNALHVLEMSANpldnngiepgafegvtvfhiriaeaKLTSVPKGLP--PTLLELHLDYNKISTVELEdFK 261
Cdd:COG4886 150 DLPEP-LGNLTNLKSLDLSNN-------------------------QLTDLPEELGnlTNLKELDLSNNQITDLPEP-LG 202
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 301069322 262 RYKELQRLGLGNNKITDIENgSLANIPRVREIHLENNKLKKIPSgLPELKYLQIIFLHSNSI 323
Cdd:COG4886 203 NLTNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQL 262
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-303 |
4.76e-16 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 79.21 E-value: 4.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 83 RVVHCSDLGLTSVPTNIPFDT--RMLDLQNNKIKEIKENdFKGLTSLYGLILNNNKLTKIhPKAFLTTKKLRRLYLSHNQ 160
Cdd:COG4886 139 KELDLSNNQLTDLPEPLGNLTnlKSLDLSNNQLTDLPEE-LGNLTNLKELDLSNNQITDL-PEPLGNLTNLEELDLSGNQ 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 161 LSEIPLNLP--KSLAELRIHENKVKKIqkDTFKGMNALHVLEMSANpldnngiepgafegvtvfhiriaeaKLTSVPKGL 238
Cdd:COG4886 217 LTDLPEPLAnlTNLETLDLSNNQLTDL--PELGNLTNLEELDLSNN-------------------------QLTDLPPLA 269
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 301069322 239 P-PTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLKKI 303
Cdd:COG4886 270 NlTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLV 335
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
90-326 |
8.62e-16 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 78.97 E-value: 8.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 90 LGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYgliLNNNKLTKIhPKAFLTT-------------------KK 150
Cdd:PRK15370 188 LGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLY---ANSNQLTSI-PATLPDTiqemelsinritelperlpSA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 151 LRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSanpldnngiepgafegvtvfhiriaeak 230
Cdd:PRK15370 264 LQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS---------------------------- 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 231 LTSVPKGLPPTLLELHLDYNKISTVElEDFKryKELQRLGLGNNKITDIENgSLAniPRVREIHLENNKLKKIPSGLP-E 309
Cdd:PRK15370 316 LTALPETLPPGLKTLEAGENALTSLP-ASLP--PELQVLDVSKNQITVLPE-TLP--PTITTLDVSRNALTNLPENLPaA 389
|
250
....*....|....*..
gi 301069322 310 LKYLQIIFlhsNSIARV 326
Cdd:PRK15370 390 LQIMQASR---NNLVRL 403
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-295 |
2.91e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 67.65 E-value: 2.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 83 RVVHCSDLGLTSVPTNIPFDT--RMLDLQNNKIKEIKEnDFKGLTSLYGLILNNNKLTKIhPKAFLTTKKLRRLYLSHNQ 160
Cdd:COG4886 162 KSLDLSNNQLTDLPEELGNLTnlKELDLSNNQITDLPE-PLGNLTNLEELDLSGNQLTDL-PEPLANLTNLETLDLSNNQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 161 LSEIP--LNLPKsLAELRIHENKVKKIqkDTFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSVPKGL 238
Cdd:COG4886 240 LTDLPelGNLTN-LEELDLSNNQLTDL--PPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLIL 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 301069322 239 PPTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHL 295
Cdd:COG4886 317 LLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLG 373
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
104-161 |
1.16e-09 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 53.68 E-value: 1.16e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 301069322 104 RMLDLQNNKIKEIKENDFKGLTSLYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQL 161
Cdd:pfam13855 4 RSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
85-324 |
8.09e-09 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 55.18 E-value: 8.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 85 VHCSDLGLTSVPTNIPF-DTRMLDLQNNKIKEIKENDF-KGLTSLYgliLNNNKLTKIHPKAFLttKKLRRLYLSHNQLS 162
Cdd:cd21340 7 LYLNDKNITKIDNLSLCkNLKVLYLYDNKITKIENLEFlTNLTHLY---LQNNQIEKIENLENL--VNLKKLYLGGNRIS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 163 EIP-LNLPKSLAELRIhenkvkkiqkdtfkgmnalhvlemsanplDNNGIEPG---AFEGVTVFHIRiaeakltsvpkgl 238
Cdd:cd21340 82 VVEgLENLTNLEELHI-----------------------------ENQRLPPGeklTFDPRSLAALS------------- 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 239 pPTLLELHLDYNKISTveLEDFKRYKELQRLGLGNNKITDIEN--GSLANIPRVREIHLENNKLKKIPsglpelKYLQII 316
Cdd:cd21340 120 -NSLRVLNISGNNIDS--LEPLAPLRNLEQLDASNNQISDLEEllDLLSSWPSLRELDLTGNPVCKKP------KYRDKI 190
|
....*...
gi 301069322 317 FLHSNSIA 324
Cdd:cd21340 191 ILASKSLE 198
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
245-326 |
2.25e-08 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 54.02 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 245 LHLDYNKIStvELEDFKRYKELQRLGLGNNKITDIENgsLANIPRVREIHLENNKLKKIPsGLPELKYLQIIFLHSNSIA 324
Cdd:cd21340 7 LYLNDKNIT--KIDNLSLCKNLKVLYLYDNKITKIEN--LEFLTNLTHLYLQNNQIEKIE-NLENLVNLKKLYLGGNRIS 81
|
..
gi 301069322 325 RV 326
Cdd:cd21340 82 VV 83
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
104-320 |
3.10e-08 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 55.18 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 104 RMLDLQNNKI-----KEIKENdFKGLTSLYGLILNNNKLTK----IHPKAFLTTKKLRRLYLSHNQLSEiplNLPKSLAE 174
Cdd:COG5238 211 TTLWLKRNPIgdegaEILAEA-LKGNKSLTTLDLSNNQIGDegviALAEALKNNTTVETLYLSGNQIGA---EGAIALAK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 175 lrihenkvkkiqkdTFKGMNALHVLEMSANPLDnngiEPGAfegvtvfhirIAEAKLTSVPKglppTLLELHLDYNKIST 254
Cdd:COG5238 287 --------------ALQGNTTLTSLDLSVNRIG----DEGA----------IALAEGLQGNK----TLHTLNLAYNGIGA 334
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 301069322 255 VE----LEDFKRYKELQRLGLGNNKITDIENGSLA----NIPRVREIHLENNKLKKipSGLPEL-KYLQIIFLHS 320
Cdd:COG5238 335 QGaialAKALQENTTLHSLDLSDNQIGDEGAIALAkyleGNTTLRELNLGKNNIGK--QGAEALiDALQTNRLHT 407
|
|
| LRRNT |
smart00013 |
Leucine rich repeat N-terminal domain; |
73-103 |
3.37e-08 |
|
Leucine rich repeat N-terminal domain;
Pssm-ID: 214470 [Multi-domain] Cd Length: 33 Bit Score: 48.85 E-value: 3.37e-08
10 20 30
....*....|....*....|....*....|.
gi 301069322 73 MCPFGCQCYSRVVHCSDLGLTSVPTNIPFDT 103
Cdd:smart00013 1 ACPAPCNCSGTAVDCSGRGLTEVPLDLPPDT 31
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
240-300 |
3.73e-08 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 3.73e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 301069322 240 PTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKL 300
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
|
|
| LRRNT |
pfam01462 |
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence ... |
73-100 |
4.33e-07 |
|
Leucine rich repeat N-terminal domain; Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
Pssm-ID: 396168 [Multi-domain] Cd Length: 28 Bit Score: 45.70 E-value: 4.33e-07
10 20
....*....|....*....|....*...
gi 301069322 73 MCPFGCQCYSRVVHCSDLGLTSVPTNIP 100
Cdd:pfam01462 1 ACPVPCHCSATVVNCSDRGLTAVPRDLP 28
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
149-357 |
5.51e-07 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 49.78 E-value: 5.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 149 KKLRRLYLSHNQLSEIP-LNLPKSLAELRIHENKVKKIQK-DTFKGMNALHvlemsanpLDNNGIEpgafegvtvfhiRI 226
Cdd:cd21340 2 KRITHLYLNDKNITKIDnLSLCKNLKVLYLYDNKITKIENlEFLTNLTHLY--------LQNNQIE------------KI 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 227 AEakLTSVPKglpptLLELHLDYNKISTVE-LEDFKRYKEL----QRLGLGnNKITdIENGSLANI-PRVREIHLENNKL 300
Cdd:cd21340 62 EN--LENLVN-----LKKLYLGGNRISVVEgLENLTNLEELhienQRLPPG-EKLT-FDPRSLAALsNSLRVLNISGNNI 132
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 301069322 301 KKIpSGLPELKYLQIIFLHSNSIARvgVNDFCPTVPKMkKSLYSaISLFNNPV----KYWE 357
Cdd:cd21340 133 DSL-EPLAPLRNLEQLDASNNQISD--LEELLDLLSSW-PSLRE-LDLTGNPVckkpKYRD 188
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
125-206 |
7.50e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 45.98 E-value: 7.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 125 TSLYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPlnlpkslaelrihenkvkkiqKDTFKGMNALHVLEMSAN 204
Cdd:pfam13855 1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLS---------------------PGAFSGLPSLRYLDLSGN 59
|
..
gi 301069322 205 PL 206
Cdd:pfam13855 60 RL 61
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
142-339 |
1.09e-06 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 50.05 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 142 PKAFLTTKKLRRLYLSHNQLSE------IPLNLPKSLAELRIHENKV-----KKIQKDTFKGMNALHVLEMSANPLDNNG 210
Cdd:cd00116 74 LQGLTKGCGLQELDLSDNALGPdgcgvlESLLRSSSLQELKLNNNGLgdrglRLLAKGLKDLPPALEKLVLGRNRLEGAS 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 211 IEPgafegvtvfhirIAEAkLTSVPKglpptLLELHLDYNKIS----TVELEDFKRYKELQRLGLGNNKITDIENGSLAN 286
Cdd:cd00116 154 CEA------------LAKA-LRANRD-----LKELNLANNGIGdagiRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 301069322 287 IPR----VREIHLENNKLK-----KIPSGLPEL-KYLQIIFLHSNSIARVGVNDFCPTVPKMK 339
Cdd:cd00116 216 TLAslksLEVLNLGDNNLTdagaaALASALLSPnISLLTLSLSCNDITDDGAKDLAEVLAEKE 278
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-288 |
3.20e-06 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 48.78 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 83 RVVHCSDLGLTSVPTNIPFDTRM--LDLQNNKIKEIKEndFKGLTSLYGLILNNNKLTKIHPKAFLTtkKLRRLYLSHNQ 160
Cdd:COG4886 208 EELDLSGNQLTDLPEPLANLTNLetLDLSNNQLTDLPE--LGNLTNLEELDLSNNQLTDLPPLANLT--NLKTLDLSNNQ 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 161 LSEIPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSVPKGLPP 240
Cdd:COG4886 284 LTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLL 363
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 301069322 241 TLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIP 288
Cdd:COG4886 364 TLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLALLDAV 411
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
153-323 |
1.21e-05 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 47.38 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 153 RLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDtfkgmnaLH--VLEMSANpldnngiepgafegvtvfhiriaEAK 230
Cdd:PRK15370 182 ELRLKILGLTTIPACIPEQITTLILDNNELKSLPEN-------LQgnIKTLYAN-----------------------SNQ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 231 LTSVPKGLPPTLLELHLDYNKIstVELEDfKRYKELQRLGLGNNKITDIENgslaNIPR-VREIHLENNKLKKIPSGLPE 309
Cdd:PRK15370 232 LTSIPATLPDTIQEMELSINRI--TELPE-RLPSALQSLDLFHNKISCLPE----NLPEeLRYLSVYDNSIRTLPAHLPS 304
|
170
....*....|....
gi 301069322 310 lkYLQIIFLHSNSI 323
Cdd:PRK15370 305 --GITHLNVQSNSL 316
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
105-332 |
1.48e-05 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 47.15 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 105 MLDLQNNKIK-EIKEndfkGLTS---LYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLS-EIPLNLPKS--LAELRI 177
Cdd:PLN00113 360 VLDLSTNNLTgEIPE----GLCSsgnLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSgELPSEFTKLplVYFLDI 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 178 HENKVKKIQKDTFKGMNALHVLEMSANPLdnNGIEPGAFEGVTVFHIRIAEAKLT-SVPKGLP--PTLLELHLDYNKIST 254
Cdd:PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKF--FGGLPDSFGSKRLENLDLSRNQFSgAVPRKLGslSELMQLKLSENKLSG 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 255 VELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLK-KIPSGLPELKYLQII----------------F 317
Cdd:PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSgEIPKNLGNVESLVQVnishnhlhgslpstgaF 593
|
250
....*....|....*
gi 301069322 318 LHSNSIARVGVNDFC 332
Cdd:PLN00113 594 LAINASAVAGNIDLC 608
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
265-323 |
3.51e-05 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 40.97 E-value: 3.51e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 301069322 265 ELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLKKIP----SGLPELKYLqiiFLHSNSI 323
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSpgafSGLPSLRYL---DLSGNRL 61
|
|
| PRK15387 |
PRK15387 |
type III secretion system effector E3 ubiquitin transferase SspH2; |
84-315 |
9.86e-05 |
|
type III secretion system effector E3 ubiquitin transferase SspH2;
Pssm-ID: 185285 [Multi-domain] Cd Length: 788 Bit Score: 44.38 E-value: 9.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 84 VVHCSDLGLTSVPTNIPFDTRMLDLQNNKikeikendfkgLTSLYGLilnnnkltkihpkafltTKKLRRLYLSHNQLSE 163
Cdd:PRK15387 205 VLNVGESGLTTLPDCLPAHITTLVIPDNN-----------LTSLPAL-----------------PPELRTLEVSGNQLTS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 164 IPLnLPKSLAELRIHENKVKKIQKDTfkgmNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEA-------------- 229
Cdd:PRK15387 257 LPV-LPPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLpalpselcklwayn 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 230 -KLTSVPKgLPPTLLELHLDYNKISTVELEDfkryKELQRLGLGNNKITdiengSLANIPR-VREIHLENNKLKKIPSGL 307
Cdd:PRK15387 332 nQLTSLPT-LPSGLQELSVSDNQLASLPTLP----SELYKLWAYNNRLT-----SLPALPSgLKELIVSGNRLTSLPVLP 401
|
....*...
gi 301069322 308 PELKYLQI 315
Cdd:PRK15387 402 SELKELMV 409
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
83-174 |
1.55e-04 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 43.92 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 83 RVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYgliLNNNKLTKIhPKAFltTKKLRRLYLSHNQLS 162
Cdd:PRK15370 328 KTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLD---VSRNALTNL-PENL--PAALQIMQASRNNLV 401
|
90
....*....|..
gi 301069322 163 EIPLNLPKSLAE 174
Cdd:PRK15370 402 RLPESLPHFRGE 413
|
|
| PRK15370 |
PRK15370 |
type III secretion system effector E3 ubiquitin transferase SlrP; |
83-262 |
1.74e-04 |
|
type III secretion system effector E3 ubiquitin transferase SlrP;
Pssm-ID: 185268 [Multi-domain] Cd Length: 754 Bit Score: 43.53 E-value: 1.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 83 RVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSlygLILNNNKLTKIhPKAFltTKKLRRLYLSHNQLS 162
Cdd:PRK15370 286 RYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKT---LEAGENALTSL-PASL--PPELQVLDVSKNQIT 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 163 EIPLNLPKSLAELRIHENKVKKIQKDTfkgMNALHVLEMSANPLdnngiepgafegvtvfhIRIAEAKLTSVPKGLPPTl 242
Cdd:PRK15370 360 VLPETLPPTITTLDVSRNALTNLPENL---PAALQIMQASRNNL-----------------VRLPESLPHFRGEGPQPT- 418
|
170 180
....*....|....*....|
gi 301069322 243 lELHLDYNKISTVELEDFKR 262
Cdd:PRK15370 419 -RIIVEYNPFSERTIQNMQR 437
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
94-323 |
4.92e-04 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 42.14 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 94 SVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLS-EIPLNLP--K 170
Cdd:PLN00113 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVgQIPRELGqmK 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 171 SLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLdnNGIEPGAFEGVTVFH-IRIAEAKLT-SVPKGL--PPTLLELH 246
Cdd:PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL--TGPIPSSLGNLKNLQyLFLYQNKLSgPIPPSIfsLQKLISLD 290
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 301069322 247 LDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLK-KIPSGLPELKYLQIIFLHSNSI 323
Cdd:PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSgEIPKNLGKHNNLTVLDLSTNNL 368
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
241-323 |
6.75e-04 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 41.46 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 241 TLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKitdiengSLANIPRVREIHLENNKLKKIPSGLPELKYLQIIFLHS 320
Cdd:COG4886 73 LLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE-------ELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSN 145
|
...
gi 301069322 321 NSI 323
Cdd:COG4886 146 NQL 148
|
|
| PLN00113 |
PLN00113 |
leucine-rich repeat receptor-like protein kinase; Provisional |
233-324 |
3.06e-03 |
|
leucine-rich repeat receptor-like protein kinase; Provisional
Pssm-ID: 215061 [Multi-domain] Cd Length: 968 Bit Score: 39.83 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301069322 233 SVPKGLPPTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKL-KKIPSGLPELK 311
Cdd:PLN00113 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLvGQIPRELGQMK 212
|
90
....*....|...
gi 301069322 312 YLQIIFLHSNSIA 324
Cdd:PLN00113 213 SLKWIYLGYNNLS 225
|
|
|