NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|133922582|ref|NP_060553|]
View 

zinc finger protein 358 [Homo sapiens]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 11473500)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11179890|12665246|10940247|11361095|22803940
SCOP:  4003583

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
166-190 1.19e-06

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 45.05  E-value: 1.19e-06
                          10        20
                  ....*....|....*....|....*
gi 133922582  166 LSQHRRTHSGEKPYRCPDCGKSFSH 190
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
35-339 1.36e-06

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 50.85  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582  35 DLDPVSEDPEPDPEDLNTVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLS 114
Cdd:COG5048  170 PLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLS 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 115 PGDPKVDPISSGLTATPQVLATSPAVLPAPASPPR----PFSCPDCGRAFRRSSGLSQHRRT--HSGE--KPYRCP--DC 184
Cdd:COG5048  250 SSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKgfslPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPysLC 329

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 185 GKSFSHGATLAQHRGIHTGARPYQCaacgkafgwrstLLKHRSSHSGEKPHHCPvcgkafgHGSLLAQHLRTHGgpRPHK 264
Cdd:COG5048  330 GKLFSRNDALKRHILLHTSISPAKE------------KLLNSSSKFSPLLNNEP-------PQSLQQYKDLKND--KKSE 388

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133922582 265 CPV--CAKGFGQGSALLKHLRTHTGERP--YPCPQCGKAFGQSSALLQHQRTHTAERPYrCPHCGKAFGQSSNLQHHLR 339
Cdd:COG5048  389 TLSnsCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSILKSFRRDLDLSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
333-356 1.26e-05

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.97  E-value: 1.26e-05
                          10        20
                  ....*....|....*....|....
gi 133922582  333 NLQHHLRIHTGERPYACPHCSKAF 356
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 375-397 4.02e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


:

Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 37.66  E-value: 4.02e-04
                          10        20
                  ....*....|....*....|...
gi 133922582  375 YRCQLCGKAFGQASSLTKHKRVH 397
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
361-384 6.02e-04

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.35  E-value: 6.02e-04
                          10        20
                  ....*....|....*....|....
gi 133922582  361 ALLQHLHVHSGERPYRCQLCGKAF 384
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
 
Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
166-190 1.19e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 45.05  E-value: 1.19e-06
                          10        20
                  ....*....|....*....|....*
gi 133922582  166 LSQHRRTHSGEKPYRCPDCGKSFSH 190
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
35-339 1.36e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 50.85  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582  35 DLDPVSEDPEPDPEDLNTVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLS 114
Cdd:COG5048  170 PLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLS 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 115 PGDPKVDPISSGLTATPQVLATSPAVLPAPASPPR----PFSCPDCGRAFRRSSGLSQHRRT--HSGE--KPYRCP--DC 184
Cdd:COG5048  250 SSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKgfslPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPysLC 329

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 185 GKSFSHGATLAQHRGIHTGARPYQCaacgkafgwrstLLKHRSSHSGEKPHHCPvcgkafgHGSLLAQHLRTHGgpRPHK 264
Cdd:COG5048  330 GKLFSRNDALKRHILLHTSISPAKE------------KLLNSSSKFSPLLNNEP-------PQSLQQYKDLKND--KKSE 388

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133922582 265 CPV--CAKGFGQGSALLKHLRTHTGERP--YPCPQCGKAFGQSSALLQHQRTHTAERPYrCPHCGKAFGQSSNLQHHLR 339
Cdd:COG5048  389 TLSnsCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSILKSFRRDLDLSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
277-300 1.77e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 44.28  E-value: 1.77e-06
                          10        20
                  ....*....|....*....|....
gi 133922582  277 ALLKHLRTHTGERPYPCPQCGKAF 300
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
zf-H2C2_2 pfam13465
Zinc-finger double domain;
333-356 1.26e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.97  E-value: 1.26e-05
                          10        20
                  ....*....|....*....|....
gi 133922582  333 NLQHHLRIHTGERPYACPHCSKAF 356
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 375-397 4.02e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 37.66  E-value: 4.02e-04
                          10        20
                  ....*....|....*....|...
gi 133922582  375 YRCQLCGKAFGQASSLTKHKRVH 397
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 316-394 5.69e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 42.40  E-value: 5.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 316 ERPYRCP--HCGKAFGQSSNLQHHlRIHTgerpyacpHCSKAFGQSSALLQHLHVHSGERPYRCQLCGKAFGQASSLTKH 393
Cdd:COG5189  347 GKPYKCPveGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417


                 .
gi 133922582 394 K 394
Cdd:COG5189  418 R 418
ZnF_C2H2 smart00355
zinc finger;
319-341 5.85e-04

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 37.45  E-value: 5.85e-04
                           10        20
                   ....*....|....*....|...
gi 133922582   319 YRCPHCGKAFGQSSNLQHHLRIH 341
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
PHA00733 PHA00733
hypothetical protein
 318-366 6.01e-04

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 40.24  E-value: 6.01e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 133922582 318 PYRCPHCGKAFGQSSNLQHHLRIhtGERPYACPHCSKAFGQSSALLQHL 366
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDHV 119
zf-H2C2_2 pfam13465
Zinc-finger double domain;
361-384 6.02e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.35  E-value: 6.02e-04
                          10        20
                  ....*....|....*....|....
gi 133922582  361 ALLQHLHVHSGERPYRCQLCGKAF 384
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 289-341 6.49e-04

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 38.69  E-value: 6.49e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 133922582 289 RPYpCPQCGKAFGQSSALLQHQRTHTaerpYRCPHCGKAFGQSSNLQHH-LRIH 341
Cdd:cd20908    1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVHcLQVH 49
PHA00733 PHA00733
hypothetical protein
 290-341 8.58e-04

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 39.47  E-value: 8.58e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 133922582 290 PYPCPQCGKAFGQSSALLQHQRthTAERPYRCPHCGKAF-GQSSNLQHHLRIH 341
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFrNTDSTLDHVCKKH 123
ZnF_C2H2 smart00355
zinc finger;
375-397 4.64e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 34.75  E-value: 4.64e-03
                           10        20
                   ....*....|....*....|...
gi 133922582   375 YRCQLCGKAFGQASSLTKHKRVH 397
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
 
Name Accession Description Interval E-value
zf-H2C2_2 pfam13465
Zinc-finger double domain;
166-190 1.19e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 45.05  E-value: 1.19e-06
                          10        20
                  ....*....|....*....|....*
gi 133922582  166 LSQHRRTHSGEKPYRCPDCGKSFSH 190
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSFKS 26
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
35-339 1.36e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 50.85  E-value: 1.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582  35 DLDPVSEDPEPDPEDLNTVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSFDLDPDVIGPVPLILDPNSDTLS 114
Cdd:COG5048  170 PLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLS 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 115 PGDPKVDPISSGLTATPQVLATSPAVLPAPASPPR----PFSCPDCGRAFRRSSGLSQHRRT--HSGE--KPYRCP--DC 184
Cdd:COG5048  250 SSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKgfslPIKSKQCNISFSRSSPLTRHLRSvnHSGEslKPFSCPysLC 329

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 185 GKSFSHGATLAQHRGIHTGARPYQCaacgkafgwrstLLKHRSSHSGEKPHHCPvcgkafgHGSLLAQHLRTHGgpRPHK 264
Cdd:COG5048  330 GKLFSRNDALKRHILLHTSISPAKE------------KLLNSSSKFSPLLNNEP-------PQSLQQYKDLKND--KKSE 388

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 133922582 265 CPV--CAKGFGQGSALLKHLRTHTGERP--YPCPQCGKAFGQSSALLQHQRTHTAERPYrCPHCGKAFGQSSNLQHHLR 339
Cdd:COG5048  389 TLSnsCIRNFKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHTNHAPL-LCSILKSFRRDLDLSNHGK 466
zf-H2C2_2 pfam13465
Zinc-finger double domain;
277-300 1.77e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 44.28  E-value: 1.77e-06
                          10        20
                  ....*....|....*....|....
gi 133922582  277 ALLKHLRTHTGERPYPCPQCGKAF 300
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
87-356 3.16e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 49.69  E-value: 3.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582  87 PMSSSFDLDPDVIGPVPLILDPNSDTLSPGDPKVDPISSGLTATPQVLATSPAVLPAPASPPRPFSCPDCGRAFRRSSGL 166
Cdd:COG5048  160 NTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKS 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 167 SQHRRTHSGEKPYRCPDCGKSFSHG---ATLAQHRGIHTGAR-------PYQCAACGKAFGWRSTLLKHR--SSHSGE-- 232
Cdd:COG5048  240 LLSQSPSSLSSSDSSSSASESPRSSlptASSQSSSPNESDSSsekgfslPIKSKQCNISFSRSSPLTRHLrsVNHSGEsl 319

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 233 KPHHCPV--CGKAFGHGSLLAQHLRTHGGPRPHKCP--VCAKGFGQGSALLKHLRTHtgERPYPCP---------QCGKA 299
Cdd:COG5048  320 KPFSCPYslCGKLFSRNDALKRHILLHTSISPAKEKllNSSSKFSPLLNNEPPQSLQ--QYKDLKNdkksetlsnSCIRN 397

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 133922582 300 FGQSSALLQHQRTHTAERP--YRCPHCGKAFGQSSNLQHHLRIHTgERPYACPHCSKAF 356
Cdd:COG5048  398 FKRDSNLSLHIITHLSFRPynCKNPPCSKSFNRHYNLIPHKKIHT-NHAPLLCSILKSF 455
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 319-341 6.63e-06

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 42.67  E-value: 6.63e-06
                          10        20
                  ....*....|....*....|...
gi 133922582  319 YRCPHCGKAFGQSSNLQHHLRIH 341
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
305-328 9.71e-06

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 42.36  E-value: 9.71e-06
                          10        20
                  ....*....|....*....|....
gi 133922582  305 ALLQHQRTHTAERPYRCPHCGKAF 328
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
zf-H2C2_2 pfam13465
Zinc-finger double domain;
333-356 1.26e-05

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 41.97  E-value: 1.26e-05
                          10        20
                  ....*....|....*....|....
gi 133922582  333 NLQHHLRIHTGERPYACPHCSKAF 356
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 32-199 4.04e-05

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 46.25  E-value: 4.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582  32 NPEDLDPVSEDPEPDPEDLNTVPEDVDPSYED-LEPVSEDLDPDAEAPGSEPQDPDPmSSSFDLDPDVIGPVPLILDPNS 110
Cdd:COG5189  225 FPERVRSRYIDIGHMMDTHQFYLEDVDLMDDDiLGPSNEEMLYKYISPSQGSAELFE-ESSLGFDYEFIHKSVGNKEIRG 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 111 DTLSPGDPKVDPI-SSGLTATPQVLATSPAVLPAPAS-----PPRPFSCP--DCGRAFRRSSGLSQHRR----------- 171
Cdd:COG5189  304 GISTGEMIDVRKLpCTNSSSNGKLAHGGERNIDTPSRmlkvkDGKPYKCPveGCNKKYKNQNGLKYHMLhghqnqklhen 383

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 133922582 172 ----THSG----EKPYRCPDCGKSFSHGATLAQHRG 199
Cdd:COG5189  384 pspeKMNIfsakDKPYRCEVCDKRYKNLNGLKYHRK 419
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 151-173 6.89e-05

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 39.98  E-value: 6.89e-05
                          10        20
                  ....*....|....*....|...
gi 133922582  151 FSCPDCGRAFRRSSGLSQHRRTH 173
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
222-244 1.99e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.51  E-value: 1.99e-04
                          10        20
                  ....*....|....*....|...
gi 133922582  222 LLKHRSSHSGEKPHHCPVCGKAF 244
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSF 24
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 291-313 2.49e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 38.44  E-value: 2.49e-04
                          10        20
                  ....*....|....*....|...
gi 133922582  291 YPCPQCGKAFGQSSALLQHQRTH 313
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 375-397 4.02e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 37.66  E-value: 4.02e-04
                          10        20
                  ....*....|....*....|...
gi 133922582  375 YRCQLCGKAFGQASSLTKHKRVH 397
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
250-272 4.85e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.74  E-value: 4.85e-04
                          10        20
                  ....*....|....*....|...
gi 133922582  250 LAQHLRTHGGPRPHKCPVCAKGF 272
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSF 24
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 316-394 5.69e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 42.40  E-value: 5.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 316 ERPYRCP--HCGKAFGQSSNLQHHlRIHTgerpyacpHCSKAFGQSSALLQHLHVHSGERPYRCQLCGKAFGQASSLTKH 393
Cdd:COG5189  347 GKPYKCPveGCNKKYKNQNGLKYH-MLHG--------HQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417


                 .
gi 133922582 394 K 394
Cdd:COG5189  418 R 418
ZnF_C2H2 smart00355
zinc finger;
319-341 5.85e-04

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 37.45  E-value: 5.85e-04
                           10        20
                   ....*....|....*....|...
gi 133922582   319 YRCPHCGKAFGQSSNLQHHLRIH 341
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
PHA00733 PHA00733
hypothetical protein
 318-366 6.01e-04

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 40.24  E-value: 6.01e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 133922582 318 PYRCPHCGKAFGQSSNLQHHLRIhtGERPYACPHCSKAFGQSSALLQHL 366
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDHV 119
zf-H2C2_2 pfam13465
Zinc-finger double domain;
361-384 6.02e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 37.35  E-value: 6.02e-04
                          10        20
                  ....*....|....*....|....
gi 133922582  361 ALLQHLHVHSGERPYRCQLCGKAF 384
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSF 24
SFP1 COG5189
Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division ...
 218-337 6.15e-04

Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning];


Pssm-ID: 227516 [Multi-domain]  Cd Length: 423  Bit Score: 42.40  E-value: 6.15e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 218 WRSTLLKHRSSHSGEKPHHCPVCGKAFGHGSLL-----AQHLRTHGGpRPHKCPV--CAKGFGQGSALLKH-LRTHTGER 289
Cdd:COG5189  301 IRGGISTGEMIDVRKLPCTNSSSNGKLAHGGERnidtpSRMLKVKDG-KPYKCPVegCNKKYKNQNGLKYHmLHGHQNQK 379

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 133922582 290 PYPCPqcgkafgqssALLQHQRTHTAERPYRCPHCGKAFGQSSNLQHH 337
Cdd:COG5189  380 LHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH 417
SUF4-like cd20908
N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), ...
 289-341 6.49e-04

N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Oryza sativa SUPPRESSOR OF FRI 4 (OsSUF4) is a C2H2-type zinc finger transcription factor which interacts with the major H3K36 methyltransferase SDG725 to promote H3K36me3 (tri-methylation at H3K9) establishment. The transcription factor OsSUF4 recognizes a specific 7-bp DNA element (5'-CGGAAAT-3'), which is contained in the promoter regions of many genes throughout the rice genome. Through interaction with OsSUF4, SDG725 is recruited to the promoters of key florigen genes, RICE FLOWERING LOCUS T1 (RFT1) and Heading date 3a (Hd3a), for H3K36 deposition to promote gene activation and rice plant flowering. OsSUF4 target genes include a number of genes involved in many biological processes. Flowering plant Arabidopsis SUF4 binds to a 15bp DNA element (5'-CCAAATTTTAAGTTT-3') within the promoter of the floral repressor gene FLOWERING LOCUS C (FLC) and recruits the FRI-C transcription activator complex to the FLC promoter. Although the DNA-binding element and target genes of AtSUF4 are different from those of OsSUF4, AtSUF4 is known to interact with the Arabidopsis H3K36 methyltransferase SDG8 (also known as ASHH2/EFS/SET8), and the methylation deposition mechanism mediated by the SUF4 transcription factor and H3K36 methyltransferase may be conserved in Arabidopsis and rice. Proteins in this family have two conserved C2H2-type zinc finger motifs at the N-terminus (included in this model), and a large proline-rich domain at the C-terminus; for OsSUF4, it has been shown that the N-terminal zinc-finger domain is responsible for DNA binding, and that the C-terminal domain interacts with SDG725.


Pssm-ID: 411020 [Multi-domain]  Cd Length: 82  Bit Score: 38.69  E-value: 6.49e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 133922582 289 RPYpCPQCGKAFGQSSALLQHQRTHTaerpYRCPHCGKAFGQSSNLQHH-LRIH 341
Cdd:cd20908    1 KPW-CYYCDREFDDEKILIQHQKAKH----FKCHICHKKLYTAGGLAVHcLQVH 49
PHA00733 PHA00733
hypothetical protein
 290-341 8.58e-04

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 39.47  E-value: 8.58e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 133922582 290 PYPCPQCGKAFGQSSALLQHQRthTAERPYRCPHCGKAF-GQSSNLQHHLRIH 341
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFrNTDSTLDHVCKKH 123
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
319-343 9.40e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 36.76  E-value: 9.40e-04
                          10        20
                  ....*....|....*....|....*
gi 133922582  319 YRCPHCGKAFGQSSNLQHHLRIHTG 343
Cdd:pfam13909   1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 45-144 1.36e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.83  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582   45 PDPEDLNTVPEDVDPSYEDLEPVSEDLDPDAEAPGSEPQDPDPMSSSfdldpdvigPVPLILDPNSDTLSPGDPKVDPIS 124
Cdd:pfam05109 476 PTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS---------PTPAVTTPTPNATSPTLGKTSPTS 546

                          90       100
                  ....*....|....*....|.
gi 133922582  125 SGLTATPQVLATSPAV-LPAP 144
Cdd:pfam05109 547 AVTTPTPNATSPTPAVtTPTP 567
PHA00733 PHA00733
hypothetical protein
 262-309 1.46e-03

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 39.09  E-value: 1.46e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 133922582 262 PHKCPVCAKGFGQGSALLKHLR--THTGErpypCPQCGKAFGQSSALLQH 309
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIRytEHSKV----CPVCGKEFRNTDSTLDH 118
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
148-189 2.35e-03

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 39.85  E-value: 2.35e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 133922582 148 PRPFSCPDCGrafrrSSGLSQHRRTHSGEKPYRCPDCGKSFS 189
Cdd:COG3677   14 PNGPVCPHCG-----STRIVKNGKTRNGRQRYRCKDCGRTFT 50
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
134-393 2.48e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 40.45  E-value: 2.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 134 LATSPAVLPAPASPPRPFSCPDCGRAFRRSSGLSQHRRTHSGEKPYRCPD--CGKSFSHGATLAQHRGIHTGARPY-QCA 210
Cdd:COG5048   17 SSTPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDlNSK 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 211 ACGKAFGWRSTLLKHRSSHSGEKPHHCPVCGKAFGHGSLLAQHLRTHGGPRPHKCPVCAKGFGQG-SALLKHLRTHTGEr 289
Cdd:COG5048   97 SLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNPLPGNNSSSVNTpQSNSLHPPLPANS- 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133922582 290 pypcpQCGKAFGQSSALLQHQRTHTAERPYRCPHCGKAFGQSSNLQHHLRIHTGErPYACPHCSKAFGQSSALLQHLHVH 369
Cdd:COG5048  176 -----LSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYSIPSSSSDQNLENSSS-SLPLTTNSQLSPKSLLSQSPSSLS 249

                        250       260
                 ....*....|....*....|....
gi 133922582 370 SGERPYRCQLCGKAFGQASSLTKH 393
Cdd:COG5048  250 SSDSSSSASESPRSSLPTASSQSS 273
ZnF_C2H2 smart00355
zinc finger;
375-397 4.64e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 34.75  E-value: 4.64e-03
                           10        20
                   ....*....|....*....|...
gi 133922582   375 YRCQLCGKAFGQASSLTKHKRVH 397
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
PHA00733 PHA00733
hypothetical protein
 346-393 5.22e-03

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 37.55  E-value: 5.22e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 133922582 346 PYACPHCSKAFGQSSALLQhlHVHSGERPYRCQLCGKAFGQASSLTKH 393
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQ--HIRYTEHSKVCPVCGKEFRNTDSTLDH 118
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 179-201 5.52e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.58  E-value: 5.52e-03
                          10        20
                  ....*....|....*....|...
gi 133922582  179 YRCPDCGKSFSHGATLAQHRGIH 201
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
 235-257 5.85e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.58  E-value: 5.85e-03
                          10        20
                  ....*....|....*....|...
gi 133922582  235 HHCPVCGKAFGHGSLLAQHLRTH 257
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
zf-H2C2_2 pfam13465
Zinc-finger double domain;
194-216 6.12e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 34.27  E-value: 6.12e-03
                          10        20
                  ....*....|....*....|...
gi 133922582  194 LAQHRGIHTGARPYQCAACGKAF 216
Cdd:pfam13465   2 LKRHMRTHTGEKPYKCPECGKSF 24
PHA00733 PHA00733
hypothetical protein
 150-197 6.14e-03

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 37.16  E-value: 6.14e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 133922582 150 PFSCPDCGRAFRRSSGLSQHRR--THSgekpYRCPDCGKSFSHGATLAQH 197
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIRytEHS----KVCPVCGKEFRNTDSTLDH 118
ZnF_C2H2 smart00355
zinc finger;
291-313 7.80e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 33.98  E-value: 7.80e-03
                           10        20
                   ....*....|....*....|...
gi 133922582   291 YPCPQCGKAFGQSSALLQHQRTH 313
Cdd:smart00355   1 YRCPECGKVFKSKSALREHMRTH 23
PHA00733 PHA00733
hypothetical protein
 234-282 7.88e-03

hypothetical protein


Pssm-ID: 177301  Cd Length: 128  Bit Score: 36.78  E-value: 7.88e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 133922582 234 PHHCPVCGKAFGHGSLLAQHLR--THGgprpHKCPVCAKGFGQGSALLKHL 282
Cdd:PHA00733  73 PYVCPLCLMPFSSSVSLKQHIRytEHS----KVCPVCGKEFRNTDSTLDHV 119
Zn_ribbon_SprT pfam17283
SprT-like zinc ribbon domain; This family represents a domain found in eukaryotes and ...
 319-359 8.69e-03

SprT-like zinc ribbon domain; This family represents a domain found in eukaryotes and prokaryotes. The domain contains a characteriztic motif of the zinc ribbon. This family includes the bacterial SprT protein.


Pssm-ID: 465398  Cd Length: 38  Bit Score: 34.21  E-value: 8.69e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 133922582  319 YRCPHCGKAFGqssnlqHHLRIHTGErpYACPHCSKAFGQS 359
Cdd:pfam17283   5 YRCPSCGREYP------RHRRSDRHN--YRCRRCKGTLGQT 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH