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Conserved domains on  [gi|64084766|ref|NP_060556|]
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fidgetin isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RecA-like_fidgetin cd19523
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ...
 487-650 3.18e-104

ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


:

Pssm-ID: 410931 [Multi-domain]  Cd Length: 163  Bit Score: 316.44  E-value: 3.18e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKI 566
Cdd:cd19523   1 DIAGLGALKAAIKEEVLWPLLRPDAFSGLLRLPRSILLFGPRGTGKTLLGRCLASQLGATFLRLRGSTLVAKWAGEGEKI 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 567 IHASFLVARCRQPSVIFVSDIDMLLSSQVnEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMK 646
Cdd:cd19523  81 LQASFLAARCRQPSVLFISDLDALLSSQD-DEASPVGRLQVELLAQLDGVLGSGEDGVLVVCTTSKPEEIDESLRRYFSK 159


                ....
gi 64084766 647 RLLI 650
Cdd:cd19523 160 RLLV 163
Vps4_C super family cl07827
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 723-756 1.19e-05

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


The actual alignment was detected with superfamily member pfam09336:

Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 43.25  E-value: 1.19e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 64084766   723 PVTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756
Cdd:pfam09336  28 PVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
AAA_lid_3 pfam17862
AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 675-706 1.32e-03

AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


:

Pssm-ID: 465537 [Multi-domain]  Cd Length: 45  Bit Score: 37.13  E-value: 1.32e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 64084766   675 DKEFALLVQRTEGFSGLDVAHLCQEAVVGPLH 706
Cdd:pfam17862   1 DVDLEELAERTEGFSGADLEALCREAALAALR 32
 
Name Accession Description Interval E-value
RecA-like_fidgetin cd19523
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ...
 487-650 3.18e-104

ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410931 [Multi-domain]  Cd Length: 163  Bit Score: 316.44  E-value: 3.18e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKI 566
Cdd:cd19523   1 DIAGLGALKAAIKEEVLWPLLRPDAFSGLLRLPRSILLFGPRGTGKTLLGRCLASQLGATFLRLRGSTLVAKWAGEGEKI 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 567 IHASFLVARCRQPSVIFVSDIDMLLSSQVnEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMK 646
Cdd:cd19523  81 LQASFLAARCRQPSVLFISDLDALLSSQD-DEASPVGRLQVELLAQLDGVLGSGEDGVLVVCTTSKPEEIDESLRRYFSK 159


                ....
gi 64084766 647 RLLI 650
Cdd:cd19523 160 RLLV 163
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 481-743 6.08e-54

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 189.06  E-value: 6.08e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 481 PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAK 558
Cdd:COG1222  73 PDVTFDDIGGLDEQIEEIREAVELPLKNPELFRkyGIEP-PKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSK 151

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 559 WLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNE-EHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEID 637
Cdd:COG1222 152 YIGEGARNVREVFELAREKAPSIIFIDEIDAIAARRTDDgTSGEVQRTVNQLLAELDGF--ESRGDVLIIAATNRPDLLD 229

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 638 ESLRRY--FMKRLLIPLPDSTARHQIIvQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAvvgplhAMpatdlSA 715
Cdd:COG1222 230 PALLRPgrFDRVIEVPLPDEEAREEIL-KIHLRDMPLADDVDLDKLAKLTEGFSGADLKAIVTEA------GM-----FA 297

                       250       260
                ....*....|....*....|....*...
gi 64084766 716 IMpSQLRPVTYQDFENAFCKIQPSISQK 743
Cdd:COG1222 298 IR-EGRDTVTMEDLEKAIEKVKKKTETA 324
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 475-756 5.08e-45

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 172.78  E-value: 5.08e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   475 EIITQGPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAG 552
Cdd:TIGR01243 442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEkmGIRP-PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   553 SGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVS-RMRTEFLMQLDTVLTSAEdqIVVICATS 631
Cdd:TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTdRIVNQLLTEMDGIQELSN--VVVIAATN 598

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   632 KPEEIDESLRR--YFMKRLLIPLPDSTARHQIivqlLSQHNYCLN---DKEFALLVQRTEGFSGLDVAHLCQEAVVGPLH 706
Cdd:TIGR01243 599 RPDILDPALLRpgRFDRLILVPPPDEEARKEI----FKIHTRSMPlaeDVDLEELAEMTEGYTGADIEAVCREAAMAALR 674

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 64084766   707 ----AMPATDLSAIMPSQLRP--VTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756
Cdd:TIGR01243 675 esigSPAKEKLEVGEEEFLKDlkVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 475-756 2.47e-35

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 138.43  E-value: 2.47e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  475 EIITQgPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAG 552
Cdd:PRK03992 121 EVIES-PNVTYEDIGGLEEQIREVREAVELPLKKPELFEevGIEP-PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  553 SGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPvSR--MRTefLMQLdtvLtsAE-------DQ 623
Cdd:PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSG-DRevQRT--LMQL---L--AEmdgfdprGN 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  624 IVVICATSKPEEIDESLRR--YFmKRLL-IPLPDSTARHQIivqlLSQHNYCLN---DKEFALLVQRTEGFSGLDVAHLC 697
Cdd:PRK03992 271 VKIIAATNRIDILDPAILRpgRF-DRIIeVPLPDEEGRLEI----LKIHTRKMNladDVDLEELAELTEGASGADLKAIC 345

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 64084766  698 QEAvvgplhAMPAtdlsaimpsqLRP----VTYQDFENAFCKIQpsiSQKELDMYVEWNKMFG 756
Cdd:PRK03992 346 TEA------GMFA----------IRDdrteVTMEDFLKAIEKVM---GKEEKDSMEEPGVMFA 389
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 522-652 1.64e-33

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 125.01  E-value: 1.64e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   522 ILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSP 601
Cdd:pfam00004   1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 64084766   602 VSRMRTEFLMQLDTVlTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPL 652
Cdd:pfam00004  81 SRRVVNQLLTELDGF-TSSNSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 519-654 7.52e-10

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 58.15  E-value: 7.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766    519 PRSILLFGPRGTGKTLLGRCIASQLGAT---FFKIAGSGLVAKWLGEAEKIIHASF------------LVARCRQ--PSV 581
Cdd:smart00382   2 GEVILIVGPPGSGKTTLARALARELGPPgggVIYIDGEDILEEVLDQLLLIIVGGKkasgsgelrlrlALALARKlkPDV 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 64084766    582 IFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLdtvltsaEDQIVVICATSKPEEIDES-LRRYFMKRLLIPLPD 654
Cdd:smart00382  82 LILDEITSLLDAEQEALLLLLEELRLLLLLKS-------EKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLIL 148
Vps4_C pfam09336
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 723-756 1.19e-05

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 43.25  E-value: 1.19e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 64084766   723 PVTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756
Cdd:pfam09336  28 PVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
AAA_lid_3 pfam17862
AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 675-706 1.32e-03

AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465537 [Multi-domain]  Cd Length: 45  Bit Score: 37.13  E-value: 1.32e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 64084766   675 DKEFALLVQRTEGFSGLDVAHLCQEAVVGPLH 706
Cdd:pfam17862   1 DVDLEELAERTEGFSGADLEALCREAALAALR 32
 
Name Accession Description Interval E-value
RecA-like_fidgetin cd19523
ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. ...
 487-650 3.18e-104

ATPase domain of fidgetin; Fidgetin (FIGN) is a ATP-dependent microtubule severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410931 [Multi-domain]  Cd Length: 163  Bit Score: 316.44  E-value: 3.18e-104
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKI 566
Cdd:cd19523   1 DIAGLGALKAAIKEEVLWPLLRPDAFSGLLRLPRSILLFGPRGTGKTLLGRCLASQLGATFLRLRGSTLVAKWAGEGEKI 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 567 IHASFLVARCRQPSVIFVSDIDMLLSSQVnEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMK 646
Cdd:cd19523  81 LQASFLAARCRQPSVLFISDLDALLSSQD-DEASPVGRLQVELLAQLDGVLGSGEDGVLVVCTTSKPEEIDESLRRYFSK 159


                ....
gi 64084766 647 RLLI 650
Cdd:cd19523 160 RLLV 163
RecA-like_VPS4-like cd19509
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ...
 488-650 7.72e-87

ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410917 [Multi-domain]  Cd Length: 163  Bit Score: 271.15  E-value: 7.72e-87
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 488 IAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKII 567
Cdd:cd19509   1 IAGLDDAKEALKEAVILPSLRPDLFPGLRGPPRGILLYGPPGTGKTLLARAVASESGSTFFSISASSLVSKWVGESEKIV 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 568 HASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMKR 647
Cdd:cd19509  81 RALFALARELQPSIIFIDEIDSLLSERGSGEHEASRRVKTEFLVQMDGVLNKPEDRVLVLGATNRPWELDEAFLRRFEKR 160


                ...
gi 64084766 648 LLI 650
Cdd:cd19509 161 IYI 163
RecA-like_Figl-1 cd19525
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ...
 465-650 4.71e-78

ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410933 [Multi-domain]  Cd Length: 186  Bit Score: 248.75  E-value: 4.71e-78
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 465 DTHLIDLVTNEIITQGPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLG 544
Cdd:cd19525   1 EPKMIELIMSEIMDHGPPINWADIAGLEFAKKTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 545 ATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQI 624
Cdd:cd19525  81 ATFFSISASSLTSKWVGEGEKMVRALFSVARCKQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSEDRI 160

                       170       180
                ....*....|....*....|....*.
gi 64084766 625 VVICATSKPEEIDESLRRYFMKRLLI 650
Cdd:cd19525 161 LVVGATNRPQEIDEAARRRLVKRLYI 186
RPT1 COG1222
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ...
 481-743 6.08e-54

ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440835 [Multi-domain]  Cd Length: 326  Bit Score: 189.06  E-value: 6.08e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 481 PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAK 558
Cdd:COG1222  73 PDVTFDDIGGLDEQIEEIREAVELPLKNPELFRkyGIEP-PKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVRGSELVSK 151

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 559 WLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNE-EHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEID 637
Cdd:COG1222 152 YIGEGARNVREVFELAREKAPSIIFIDEIDAIAARRTDDgTSGEVQRTVNQLLAELDGF--ESRGDVLIIAATNRPDLLD 229

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 638 ESLRRY--FMKRLLIPLPDSTARHQIIvQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQEAvvgplhAMpatdlSA 715
Cdd:COG1222 230 PALLRPgrFDRVIEVPLPDEEAREEIL-KIHLRDMPLADDVDLDKLAKLTEGFSGADLKAIVTEA------GM-----FA 297

                       250       260
                ....*....|....*....|....*...
gi 64084766 716 IMpSQLRPVTYQDFENAFCKIQPSISQK 743
Cdd:COG1222 298 IR-EGRDTVTMEDLEKAIEKVKKKTETA 324
RecA-like_spastin cd19524
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ...
 487-650 1.12e-51

ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410932 [Multi-domain]  Cd Length: 164  Bit Score: 177.35  E-value: 1.12e-51
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKI 566
Cdd:cd19524   1 DIAGQDLAKQALQEMVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 567 IHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYFMK 646
Cdd:cd19524  81 VRALFAVARELQPSIIFIDEVDSLLSERSEGEHEASRRLKTEFLIEFDGVQSNGDDRVLVMGATNRPQELDDAVLRRFTK 160


                ....
gi 64084766 647 RLLI 650
Cdd:cd19524 161 RVYV 164
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 485-732 5.39e-48

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 174.71  E-value: 5.39e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 485 WNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTaLPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGE 562
Cdd:COG0464 156 LDDLGGLEEVKEELRELVALPLKRPELREeyGLP-PPRGLLLYGPPGTGKTLLARALAGELGLPLIEVDLSDLVSKYVGE 234

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 563 AEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVltsaEDQIVVICATSKPEEIDESLRR 642
Cdd:COG0464 235 TEKNLREVFDKARGLAPCVLFIDEADALAGKRGEVGDGVGRRVVNTLLTEMEEL----RSDVVVIAATNRPDLLDPALLR 310

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 643 YFMKRLLIPLPDSTARHQIIVQLLSQHNYClNDKEFALLVQRTEGFSGLDVAHLCQEAVvgpLHAMPATDlsaimpsqlR 722
Cdd:COG0464 311 RFDEIIFFPLPDAEERLEIFRIHLRKRPLD-EDVDLEELAEATEGLSGADIRNVVRRAA---LQALRLGR---------E 377

                       250
                ....*....|
gi 64084766 723 PVTYQDFENA 732
Cdd:COG0464 378 PVTTEDLLEA 387
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 475-756 5.08e-45

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 172.78  E-value: 5.08e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   475 EIITQGPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAG 552
Cdd:TIGR01243 442 EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEkmGIRP-PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   553 SGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVS-RMRTEFLMQLDTVLTSAEdqIVVICATS 631
Cdd:TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTdRIVNQLLTEMDGIQELSN--VVVIAATN 598

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   632 KPEEIDESLRR--YFMKRLLIPLPDSTARHQIivqlLSQHNYCLN---DKEFALLVQRTEGFSGLDVAHLCQEAVVGPLH 706
Cdd:TIGR01243 599 RPDILDPALLRpgRFDRLILVPPPDEEARKEI----FKIHTRSMPlaeDVDLEELAEMTEGYTGADIEAVCREAAMAALR 674

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 64084766   707 ----AMPATDLSAIMPSQLRP--VTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756
Cdd:TIGR01243 675 esigSPAKEKLEVGEEEFLKDlkVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730
RecA-like_VPS4 cd19521
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ...
 481-650 4.77e-43

ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410929 [Multi-domain]  Cd Length: 170  Bit Score: 153.48  E-value: 4.77e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 481 PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWL 560
Cdd:cd19521   2 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFTGNRKPWSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 561 GEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVlTSAEDQIVVICATSKPEEIDESL 640
Cdd:cd19521  82 GESEKLVKQLFAMARENKPSIIFIDEVDSLCGTRGEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAI 160

                       170
                ....*....|
gi 64084766 641 RRYFMKRLLI 650
Cdd:cd19521 161 RRRFEKRIYI 170
RecA-like_ATAD1 cd19520
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ...
 487-650 2.10e-42

ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410928 [Multi-domain]  Cd Length: 166  Bit Score: 151.42  E-value: 2.10e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAF--SGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564
Cdd:cd19520   1 DIGGLDEVITELKELVILPLQRPELFdnSRLLQPPKGVLLYGPPGCGKTMLAKATAKEAGARFINLQVSSLTDKWYGESQ 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 565 KIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEIDESLRRYF 644
Cdd:cd19520  81 KLVAAVFSLASKLQPSIIFIDEIDSFLRQRSSTDHEATAMMKAEFMSLWDGLSTDGNCRVIVMGATNRPQDLDEAILRRM 160


                ....*.
gi 64084766 645 MKRLLI 650
Cdd:cd19520 161 PKRFHI 166
RecA-like_KTNA1 cd19522
Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is ...
 487-650 1.42e-38

Katanin p60 ATPase-containing subunit A1; Katanin p60 ATPase-containing subunit A1 (KTNA1) is the catalytic subunit of the Katanin complex which is severs microtubules in an ATP-dependent manner, and is implicated in multiple aspects of microtubule dynamics. In addition to the p60 catalytic ATPase subunit, Katanin contains an accessory subunit (p80 or p80-like). The microtubule-severing activity of the ATPase is essential for female meiotic spindle assembly, and male gamete production; and the katanin complex severing microtubules is under tight regulation during the transition from the meiotic to mitotic stage to allow proper embryogenesis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410930 [Multi-domain]  Cd Length: 170  Bit Score: 140.89  E-value: 1.42e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKI 566
Cdd:cd19522   1 DIADLEEAKKLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKYRGESEKL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 567 IHASFLVARCRQPSVIFVSDIDMLLSSQ-VNEEHSPVSRMRTEFLMQLDTVLTSAEDQ-----IVVICATSKPEEIDESL 640
Cdd:cd19522  81 VRLLFEMARFYAPTTIFIDEIDSICSRRgTSEEHEASRRVKSELLVQMDGVGGASENDdpskmVMVLAATNFPWDIDEAL 160

                       170
                ....*....|
gi 64084766 641 RRYFMKRLLI 650
Cdd:cd19522 161 RRRLEKRIYI 170
PRK03992 PRK03992
proteasome-activating nucleotidase; Provisional
 475-756 2.47e-35

proteasome-activating nucleotidase; Provisional


Pssm-ID: 179699 [Multi-domain]  Cd Length: 389  Bit Score: 138.43  E-value: 2.47e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  475 EIITQgPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAG 552
Cdd:PRK03992 121 EVIES-PNVTYEDIGGLEEQIREVREAVELPLKKPELFEevGIEP-PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  553 SGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPvSR--MRTefLMQLdtvLtsAE-------DQ 623
Cdd:PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSG-DRevQRT--LMQL---L--AEmdgfdprGN 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  624 IVVICATSKPEEIDESLRR--YFmKRLL-IPLPDSTARHQIivqlLSQHNYCLN---DKEFALLVQRTEGFSGLDVAHLC 697
Cdd:PRK03992 271 VKIIAATNRIDILDPAILRpgRF-DRIIeVPLPDEEGRLEI----LKIHTRKMNladDVDLEELAELTEGASGADLKAIC 345

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 64084766  698 QEAvvgplhAMPAtdlsaimpsqLRP----VTYQDFENAFCKIQpsiSQKELDMYVEWNKMFG 756
Cdd:PRK03992 346 TEA------GMFA----------IRDdrteVTMEDFLKAIEKVM---GKEEKDSMEEPGVMFA 389
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 522-652 1.64e-33

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 125.01  E-value: 1.64e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   522 ILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSP 601
Cdd:pfam00004   1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSRGSGGDSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 64084766   602 VSRMRTEFLMQLDTVlTSAEDQIVVICATSKPEEIDESLRRYFMKRLLIPL 652
Cdd:pfam00004  81 SRRVVNQLLTELDGF-TSSNSKVIVIAATNRPDKLDPALLGRFDRIIEFPL 130
RecA-like_CDC48_NLV2_r1-like cd19503
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ...
 487-642 1.67e-33

first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410911 [Multi-domain]  Cd Length: 165  Bit Score: 126.25  E-value: 1.67e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAE 564
Cdd:cd19503   1 DIGGLDEQIASLKELIELPLKYPELFRalGLKP-PRGVLLHGPPGTGKTLLARAVANEAGANFLSISGPSIVSKYLGESE 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64084766 565 KIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19503  80 KNLREIFEEARSHAPSIIFIDEIDALAPKREEDQREVERRVVAQLLTLMDGM--SSRGKVVVIAATNRPDAIDPALRR 155
RecA-like_CDC48_r2-like cd19511
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ...
 494-642 3.99e-33

second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410919 [Multi-domain]  Cd Length: 159  Bit Score: 125.09  E-value: 3.99e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPVLRSDAFS--GLTaLPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASF 571
Cdd:cd19511   1 VKRELKEAVEWPLKHPDAFKrlGIR-PPKGVLLYGPPGCGKTLLAKALASEAGLNFISVKGPELFSKYVGESERAVREIF 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 64084766 572 LVARCRQPSVIFVSDIDMLLSSQVNEEHSPVS-RMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19511  80 QKARQAAPCIIFFDEIDSLAPRRGQSDSSGVTdRVVSQLLTELDGI--ESLKGVVVIAATNRPDMIDPALLR 149
CDC48 TIGR01243
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ...
 463-750 6.34e-33

AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.


Pssm-ID: 273521 [Multi-domain]  Cd Length: 733  Bit Score: 135.80  E-value: 6.34e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   463 NTDTHLIDLVTNEIITQG-PPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIA 540
Cdd:TIGR01243 154 ATEVEIREKPVREEIERKvPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLgIEPPKGVLLYGPPGTGKTLLAKAVA 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   541 SQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVltSA 620
Cdd:TIGR01243 234 NEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--KG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   621 EDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIvQLLSQHNYCLNDKEFALLVQRTEGFSGLDVAHLCQ 698
Cdd:TIGR01243 312 RGRVIVIGATNRPDALDPALRRpgRFDREIVIRVPDKRARKEIL-KVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAK 390

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   699 EAVVGPLHAM--------PATDLSAIMPSQLRpVTYQDFENAFCKIQPSISQkelDMYVE 750
Cdd:TIGR01243 391 EAAMAALRRFiregkinfEAEEIPAEVLKELK-VTMKDFMEALKMVEPSAIR---EVLVE 446
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 494-642 7.95e-32

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 121.24  E-value: 7.95e-32
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLV 573
Cdd:cd19481   1 LKASLREAVEAPRRGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLLSKYVGESEKNLRKIFER 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 574 ARCRQPSVIFVSDIDMLLSSQVNEEHSPV-SRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19481  81 ARRLAPCILFIDEIDAIGRKRDSSGESGElRRVLNQLLTELDGV--NSRSKVLVIAATNRPDLLDPALLR 148
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
485-722 7.02e-31

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 121.53  E-value: 7.02e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 485 WNDIAGLDLVKA----VIKEEVLWPVLRSdafSGLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWL 560
Cdd:COG1223   1 LDDVVGQEEAKKklklIIKELRRRENLRK---FGLWP-PRKILFYGPPGTGKTMLAEALAGELKLPLLTVRLDSLIGSYL 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 561 GEAEKIIHASFLVARcRQPSVIFVSDIDML-LSSQVNEEHSPVSRMRTEFLMQLDTVltsaEDQIVVICATSKPEEIDES 639
Cdd:COG1223  77 GETARNLRKLFDFAR-RAPCVIFFDEFDAIaKDRGDQNDVGEVKRVVNALLQELDGL----PSGSVVIAATNHPELLDSA 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 640 LRRYFMKRLLIPLPDSTARHQIIVQLLSQHnYCLNDKEFALLVQRTEGFSGLDVAHLCQEAVvgplHAMPATDLSAIMPS 719
Cdd:COG1223 152 LWRRFDEVIEFPLPDKEERKEILELNLKKF-PLPFELDLKKLAKKLEGLSGADIEKVLKTAL----KKAILEDREKVTKE 226


                ...
gi 64084766 720 QLR 722
Cdd:COG1223 227 DLE 229
RecA-like_VCP_r2 cd19529
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ...
 494-642 1.14e-29

second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410937 [Multi-domain]  Cd Length: 159  Bit Score: 115.29  E-value: 1.14e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPVLRSDAF--SGLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASF 571
Cdd:cd19529   1 VKQELKEAVEWPLLKPEVFkrLGIRP-PKGILLYGPPGTGKTLLAKAVATESNANFISVKGPELLSKWVGESEKAIREIF 79

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 64084766 572 LVARCRQPSVIFVSDIDMLLSSQVNEEHSPVS-RMRTEFLMQLDTvLTSAEDqIVVICATSKPEEIDESLRR 642
Cdd:cd19529  80 RKARQVAPCVIFFDEIDSIAPRRGTTGDSGVTeRVVNQLLTELDG-LEEMNG-VVVIAATNRPDIIDPALLR 149
RecA-like_PAN_like cd19502
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ...
 484-642 1.46e-29

proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410910 [Multi-domain]  Cd Length: 171  Bit Score: 115.13  E-value: 1.46e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 484 DWNDIAGLDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGE 562
Cdd:cd19502   1 TYEDIGGLDEQIREIREVVELPLKHPELFEELgIEPPKGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGSELVQKYIGE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 563 AEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHS---PVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDES 639
Cdd:cd19502  81 GARLVRELFEMAREKAPSIIFIDEIDAIGAKRFDSGTGgdrEVQRTMLELLNQLDGF--DPRGNIKVIMATNRPDILDPA 158


                ...
gi 64084766 640 LRR 642
Cdd:cd19502 159 LLR 161
PTZ00454 PTZ00454
26S protease regulatory subunit 6B-like protein; Provisional
 477-748 1.25e-28

26S protease regulatory subunit 6B-like protein; Provisional


Pssm-ID: 240423 [Multi-domain]  Cd Length: 398  Bit Score: 118.71  E-value: 1.25e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  477 ITQGPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSG 554
Cdd:PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEqiGIDP-PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  555 LVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSP---VSRMRTEFLMQLDTVltsaeDQIV---VIC 628
Cdd:PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGAdreVQRILLELLNQMDGF-----DQTTnvkVIM 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  629 ATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIVQLLSQHNYClNDKEFALLVQRTEGFSGLDVAHLCQEAvvgplh 706
Cdd:PTZ00454 290 ATNRADTLDPALLRpgRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEA------ 362

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 64084766  707 AMPATDLSAIMpsqlrpVTYQDFENAFcKIQPSISQKELDMY 748
Cdd:PTZ00454 363 GMQAVRKNRYV------ILPKDFEKGY-KTVVRKTDRDYDFY 397
RecA-like_CDC48_r1-like cd19519
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ...
 487-643 8.49e-26

first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410927 [Multi-domain]  Cd Length: 166  Bit Score: 104.44  E-value: 8.49e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEK 565
Cdd:cd19519   1 DIGGCRKQLAQIREMVELPLRHPELFKAIgIKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESES 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 566 IIHASFLVARCRQPSVIFVSDIDMlLSSQVNEEHSPVSRmrtEFLMQLDTVL--TSAEDQIVVICATSKPEEIDESLRRY 643
Cdd:cd19519  81 NLRKAFEEAEKNAPAIIFIDEIDA-IAPKREKTHGEVER---RIVSQLLTLMdgLKQRAHVIVMAATNRPNSIDPALRRF 156
RecA-like_NVL_r2-like cd19530
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ...
 491-642 5.87e-25

second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410938 [Multi-domain]  Cd Length: 161  Bit Score: 101.80  E-value: 5.87e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 491 LDLVKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHA 569
Cdd:cd19530   1 LDHVREELTMSILRPIKRPDIYKALgIDLPTGVLLYGPPGCGKTLLAKAVANESGANFISVKGPELLNKYVGESERAVRQ 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 64084766 570 SFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19530  81 VFQRARASAPCVIFFDEVDALVPKRGDGGSWASERVVNQLLTEMDGL--EERSNVFVIAATNRPDIIDPAMLR 151
PTZ00361 PTZ00361
26 proteosome regulatory subunit 4-like protein; Provisional
 471-700 7.00e-24

26 proteosome regulatory subunit 4-like protein; Provisional


Pssm-ID: 185575 [Multi-domain]  Cd Length: 438  Bit Score: 105.24  E-value: 7.00e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  471 LVTNEIITQGPPVDWNDIAGLDLVKAVIKEEVLWPVLRSDAFS--GLTAlPRSILLFGPRGTGKTLLGRCIASQLGATFF 548
Cdd:PTZ00361 168 LVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDdiGIKP-PKGVILYGPPGTGKTLLAKAVANETSATFL 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  549 KIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHS---PVSRMRTEFLMQLDTVLTSAEdqIV 625
Cdd:PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGgekEIQRTMLELLNQLDGFDSRGD--VK 324

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 64084766  626 VICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIVQLLSQHNYClNDKEFALLVQRTEGFSGLDVAHLCQEA 700
Cdd:PTZ00361 325 VIMATNRIESLDPALIRpgRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEA 400
RecA-like_Yta7-like cd19517
ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces ...
 487-642 2.30e-23

ATPase domain of Saccharomyces cerevisiae Yta7 and similar ATPase domains; Saccharomyces cerevisiae Yta7 is a chromatin-associated AAA-ATPase involved in regulation of chromatin dynamics. Its human ortholog ANCCA/ATAD2 transcriptionally activates pathways of malignancy in a broad range of cancers. The RecA-like_Yta7 subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410925 [Multi-domain]  Cd Length: 170  Bit Score: 97.58  E-value: 2.30e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALP-RSILLFGPRGTGKTLLGRCIASQLGA-----TFFKIAGSGLVAKWL 560
Cdd:cd19517   1 DIGGLSHYINQLKEMVFFPLLYPEVFAKFKITPpRGVLFHGPPGTGKTLMARALAAECSKggqkvSFFMRKGADCLSKWV 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 561 GEAEKIIHASFLVARCRQPSVIFVSDIDMLL---SSQVNEEHSPVSRMRTEFLMQLDTvltsaEDQIVVICATSKPEEID 637
Cdd:cd19517  81 GEAERQLRLLFEEAYRMQPSIIFFDEIDGLApvrSSKQEQIHASIVSTLLALMDGLDN-----RGQVVVIGATNRPDALD 155


                ....*
gi 64084766 638 ESLRR 642
Cdd:cd19517 156 PALRR 160
RecA-like_CDC48_r2-like cd19528
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ...
 494-642 8.98e-23

second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410936 [Multi-domain]  Cd Length: 161  Bit Score: 95.65  E-value: 8.98e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPVLRSDAFSGLTALP-RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFL 572
Cdd:cd19528   1 VKRELQELVQYPVEHPDKFLKFGMTPsKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFD 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 64084766 573 VARCRQPSVIFVSDIDMLL---SSQVNEEHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19528  81 KARAAAPCVLFFDELDSIAkarGGNIGDAGGAADRVINQILTEMDGM--NTKKNVFIIGATNRPDIIDPAILR 151
hflB PRK10733
ATP-dependent zinc metalloprotease FtsH;
442-702 2.93e-22

ATP-dependent zinc metalloprotease FtsH;


Pssm-ID: 182683 [Multi-domain]  Cd Length: 644  Bit Score: 102.03  E-value: 2.93e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  442 MQGPGLRAATSSNHS-----VDEQLKNTdthlidlvtneiitqgppvdWNDIAGLDLVKAVIKEEVLWpvLRSDA-FSGL 515
Cdd:PRK10733 123 MQGGGGKGAMSFGKSkarmlTEDQIKTT--------------------FADVAGCDEAKEEVAELVEY--LREPSrFQKL 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  516 TA-LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDML---L 591
Cdd:PRK10733 181 GGkIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVgrqR 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  592 SSQVNEEHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIIvQLLSQH 669
Cdd:PRK10733 261 GAGLGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRpgRFDRQVVVGLPDVRGREQIL-KVHMRR 337

                        250       260       270
                 ....*....|....*....|....*....|...
gi 64084766  670 NYCLNDKEFALLVQRTEGFSGLDVAHLCQEAVV 702
Cdd:PRK10733 338 VPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 370
RecA-like_NVL_r1-like cd19518
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ...
 487-642 6.80e-22

first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410926 [Multi-domain]  Cd Length: 169  Bit Score: 93.24  E-value: 6.80e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAVIKEEVLWPVLRSDAFSGLTALP-RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEK 565
Cdd:cd19518   1 DIGGMDSTLKELCELLIHPILPPEYFQHLGVEPpRGVLLHGPPGCGKTMLANAIAGELKVPFLKISATEIVSGVSGESEE 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 64084766 566 IIHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLD--TVLTSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19518  81 KIRELFDQAISNAPCIVFIDEIDAITPKRESAQREMERRIVSQLLTCMDelNNEKTAGGPVLVIGATNRPDSLDPALRR 159
RecA-like_PEX6_r2 cd19527
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ...
 494-642 2.49e-21

second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410935 [Multi-domain]  Cd Length: 160  Bit Score: 91.42  E-value: 2.49e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPVLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLV 573
Cdd:cd19527   1 VKKEILDTIQLPLEHPELFSSGLRKRSGILLYGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEANVREVFQK 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 64084766 574 ARCRQPSVIFVSDIDMLLSSQVNEEHSP--VSRMRTEFLMQLDTVLTSAEDqIVVICATSKPEEIDESLRR 642
Cdd:cd19527  81 ARDAKPCVIFFDELDSLAPSRGNSGDSGgvMDRVVSQLLAELDGMSSSGQD-VFVIGATNRPDLLDPALLR 150
RecA-like_PEX1_r2 cd19526
second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as ...
 494-642 1.02e-19

second of two ATPase domains of Peroxisomal biogenesis factor 1 (PEX1); PEX1(also known as Peroxin-1)/PEX6 is a protein unfoldase; PEX1 and PEX6 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. PEX-1 is required for stability of PEX5. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410934 [Multi-domain]  Cd Length: 158  Bit Score: 86.71  E-value: 1.02e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPVLRSDAFSGL-TALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFL 572
Cdd:cd19526   1 VKKALEETIEWPSKYPKIFASSpLRLRSGILLYGPPGCGKTLLASAIASECGLNFISVKGPELLNKYIGASEQNVRDLFS 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 573 VARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19526  81 RAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTQLDGV--EGLDGVYVLAATSRPDLIDPALLR 148
RecA-like_FtsH cd19501
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ...
 483-642 4.55e-19

ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410909 [Multi-domain]  Cd Length: 171  Bit Score: 84.98  E-value: 4.55e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 483 VDWNDIAGLDLVKAVIKE--EVLwpvLRSDAFSGLTA-LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKW 559
Cdd:cd19501   1 VTFKDVAGCEEAKEELKEvvEFL---KNPEKFTKLGAkIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 77

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 560 LGEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQ---VNEEHSPVSRMRTEFLMQLDTVLTSaeDQIVVICATSKPEEI 636
Cdd:cd19501  78 VGVGASRVRDLFEQAKKNAPCIVFIDEIDAVGRKRgagLGGGHDEREQTLNQLLVEMDGFESN--TGVIVIAATNRPDVL 155


                ....*.
gi 64084766 637 DESLRR 642
Cdd:cd19501 156 DPALLR 161
ftsH CHL00176
cell division protein; Validated
 483-702 1.55e-17

cell division protein; Validated


Pssm-ID: 214386 [Multi-domain]  Cd Length: 638  Bit Score: 87.03  E-value: 1.55e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  483 VDWNDIAGLDLVKAVIkEEVLWPVLRSDAFSGLTA-LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLG 561
Cdd:CHL00176 180 ITFRDIAGIEEAKEEF-EEVVSFLKKPERFTAVGAkIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  562 EAEKIIHASFLVARCRQPSVIFVSDIDML---LSSQVNEEHSPvsrmRTEFLMQLDTVLTSAEDQ--IVVICATSKPEEI 636
Cdd:CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVgrqRGAGIGGGNDE----REQTLNQLLTEMDGFKGNkgVIVIAATNRVDIL 334

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 64084766  637 DESLRR--YFMKRLLIPLPDSTARHQIivqlLSQHnycLNDKEFA------LLVQRTEGFSGLDVAHLCQEAVV 702
Cdd:CHL00176 335 DAALLRpgRFDRQITVSLPDREGRLDI----LKVH---ARNKKLSpdvsleLIARRTPGFSGADLANLLNEAAI 401
RecA-like_IQCA1 cd19506
ATPase domain of IQ and AAA domain-containing protein 1 (IQCA1); IQCA1 (also known as dynein ...
 494-650 3.85e-16

ATPase domain of IQ and AAA domain-containing protein 1 (IQCA1); IQCA1 (also known as dynein regulatory complex subunit 11, DRC11 and IQCA) is an ATPase subunit of the nexin-dynein regulatory complex (N-DRC). The 9 + 2 axoneme of most motile cilia and flagella consists of nine outer doublet microtubules arranged in a ring surrounding a central pair of two singlet microtubules. The N-DRC complex maintains alignment between outer doublet microtubules and limits microtubule sliding in motile axonemes. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410914 [Multi-domain]  Cd Length: 160  Bit Score: 76.41  E-value: 3.85e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 494 VKAVIKEEVLWPvLRSDAFSGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEA--EKIIHASF 571
Cdd:cd19506   2 VRQLLTLYGILP-LGSQAVHEKAPLVKSLLLAGPSGVGKKMLVHAICTETGANLFNLSPSNIAGKYPGKNglQMMLHLVL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 572 LVARCRQPSVIFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLDTVLTSAEDQIVVICATSKPEEID-ESLRRYFMKRLLI 650
Cdd:cd19506  81 KVARQLQPSVIWIGDAEKTFYKKVPKTEKQLDPKRLKKDLPKILKSLKPEDRVLIVGTTSRPFEADlKSFCKVYNKIILI 160
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 519-652 8.00e-16

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 75.26  E-value: 8.00e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 519 PRSILLFGPRGTGKTLLGRCIASQL---GATFFKIAGSGLVAKWLGEAEK---IIHASFLVARCRQPSVIFVSDIDMLLs 592
Cdd:cd00009  19 PKNLLLYGPPGTGKTTLARAIANELfrpGAPFLYLNASDLLEGLVVAELFghfLVRLLFELAEKAKPGVLFIDEIDSLS- 97

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 64084766 593 sqvneehspvSRMRTEFLMQLDTVLTSAE--DQIVVICATSKPEEIDESLRRY--FMKRLLIPL 652
Cdd:cd00009  98 ----------RGAQNALLRVLETLNDLRIdrENVRVIGATNRPLLGDLDRALYdrLDIRIVIPL 151
HflB COG0465
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
481-737 1.82e-11

ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440233 [Multi-domain]  Cd Length: 583  Bit Score: 67.37  E-value: 1.82e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 481 PPVDWNDIAGLDLVKAVIKEEVLWpvLRS-DAFSGLTA-LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAK 558
Cdd:COG0465 137 PKVTFDDVAGVDEAKEELQEIVDF--LKDpEKFTRLGAkIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 214

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 559 WLGeaekiIHAS-----FLVARCRQPSVIFVSDIDmllssqvneehsPVSRMR-------------TefLMQLdtvLT-- 618
Cdd:COG0465 215 FVG-----VGASrvrdlFEQAKKNAPCIIFIDEID------------AVGRQRgaglggghdereqT--LNQL---LVem 272

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 619 ---SAEDQIVVICATSKPEEIDESLRR--YFMKRLLIPLPDSTARHQIivqlLSQHnycLNDKEFA------LLVQRTEG 687
Cdd:COG0465 273 dgfEGNEGVIVIAATNRPDVLDPALLRpgRFDRQVVVDLPDVKGREAI----LKVH---ARKKPLApdvdleVIARRTPG 345

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|..
gi 64084766 688 FSGLDVAHLCQEAvvgplhampatdlsAIMP--SQLRPVTYQDFENAFCKIQ 737
Cdd:COG0465 346 FSGADLANLVNEA--------------ALLAarRNKKAVTMEDFEEAIDRVI 383
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 519-654 7.52e-10

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 58.15  E-value: 7.52e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766    519 PRSILLFGPRGTGKTLLGRCIASQLGAT---FFKIAGSGLVAKWLGEAEKIIHASF------------LVARCRQ--PSV 581
Cdd:smart00382   2 GEVILIVGPPGSGKTTLARALARELGPPgggVIYIDGEDILEEVLDQLLLIIVGGKkasgsgelrlrlALALARKlkPDV 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 64084766    582 IFVSDIDMLLSSQVNEEHSPVSRMRTEFLMQLdtvltsaEDQIVVICATSKPEEIDES-LRRYFMKRLLIPLPD 654
Cdd:smart00382  82 LILDEITSLLDAEQEALLLLLEELRLLLLLKS-------EKNLTVILTTNDEKDLGPAlLRRRFDRRIVLLLIL 148
RecA-like_Ycf46-like cd19507
ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of ...
 487-610 9.00e-10

ATPase domain of Ycf46 and similar ATPase domains; Ycf46 may play a role in the regulation of photosynthesis in cyanobacteria, especially in CO2 uptake and utilization. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410915 [Multi-domain]  Cd Length: 161  Bit Score: 58.15  E-value: 9.00e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 487 DIAGLDLVKAvikeevlWPVLRSDAFS------GLtALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWL 560
Cdd:cd19507   1 DVGGLDNLKD-------WLKKRKAAFSkqasayGL-PTPKGLLLVGIQGTGKSLTAKAIAGVWQLPLLRLDMGRLFGGLV 72

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 64084766 561 GEAEKIIHASFLVARCRQPSVIFVSDIDMLLSSQVNE-EHSPVSRMRTEFL 610
Cdd:cd19507  73 GESESRLRQMIQTAEAIAPCVLWIDEIEKGFSNADSKgDSGTSSRVLGTFL 123
ycf46 CHL00195
Ycf46; Provisional
 460-738 2.10e-08

Ycf46; Provisional


Pssm-ID: 177094 [Multi-domain]  Cd Length: 489  Bit Score: 57.34  E-value: 2.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  460 QLKNTDTHLIDLVTNE---IITQGP-----PVDW--NDIAGLDLVKavikeevLWPVLRSDAFS------GLTAlPRSIL 523
Cdd:CHL00195 192 TYKTIDENSIPLILEEkkqIISQTEilefySVNEkiSDIGGLDNLK-------DWLKKRSTSFSkqasnyGLPT-PRGLL 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  524 LFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAKWLGEAEKIIHASFLVARCRQPSVIFVSDIDMLLS-SQVNEEHSPV 602
Cdd:CHL00195 264 LVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSnSESKGDSGTT 343

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766  603 SRMRTEFLMQLdtvltSAEDQIVVICAT-----SKPEEIdesLRR-YFMKRLLIPLPDSTARHQIIVQLLSQ------HN 670
Cdd:CHL00195 344 NRVLATFITWL-----SEKKSPVFVVATannidLLPLEI---LRKgRFDEIFFLDLPSLEEREKIFKIHLQKfrpkswKK 415

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 64084766  671 YclndkEFALLVQRTEGFSGLDVahlcQEAVVGPLHampatdlsaIMPSQLRPVTYQDFENAFCKIQP 738
Cdd:CHL00195 416 Y-----DIKKLSKLSNKFSGAEI----EQSIIEAMY---------IAFYEKREFTTDDILLALKQFIP 465
RecA-like_NSF-SEC18_r1-like cd19504
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ...
 520-642 1.49e-07

first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410912 [Multi-domain]  Cd Length: 177  Bit Score: 52.11  E-value: 1.49e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 520 RSILLFGPRGTGKTLLGRCIASQLGATFFKIA-GSGLVAKWLGEAEKIIHASFLVARCRQPS--------VIFVSDIDML 590
Cdd:cd19504  36 KGILLYGPPGTGKTLMARQIGKMLNAREPKIVnGPEILNKYVGESEANIRKLFADAEEEQRRlgansglhIIIFDEIDAI 115

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....
gi 64084766 591 LSSQ--VNEEHSPVSRMRTEFLMQLDTVltSAEDQIVVICATSKPEEIDESLRR 642
Cdd:cd19504 116 CKQRgsMAGSTGVHDTVVNQLLSKIDGV--EQLNNILVIGMTNRKDLIDEALLR 167
RecA-like_ATAD3-like cd19512
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ...
 517-637 1.62e-06

ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410920 [Multi-domain]  Cd Length: 150  Bit Score: 48.29  E-value: 1.62e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 517 ALPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGsGLVAKWLGEAEKIIHASFLVA-RCRQPSVIFVSDIDMLLSSQV 595
Cdd:cd19512  20 GLYRNILFYGPPGTGKTLFAKKLALHSGMDYAIMTG-GDVAPMGREGVTAIHKVFDWAnTSRRGLLLFVDEADAFLRKRS 98

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*
gi 64084766 596 NEEHSPVSRmrteflMQLDTVLTSAEDQ---IVVICATSKPEEID 637
Cdd:cd19512  99 TEKISEDLR------AALNAFLYRTGEQsnkFMLVLASNQPEQFD 137
Vps4_C pfam09336
Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase ...
 723-756 1.19e-05

Vps4 C terminal oligomerization domain; This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.


Pssm-ID: 462762 [Multi-domain]  Cd Length: 61  Bit Score: 43.25  E-value: 1.19e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 64084766   723 PVTYQDFENAFCKIQPSISQKELDMYVEWNKMFG 756
Cdd:pfam09336  28 PVTMKDFLKALKSSRPTVSKEDLEKYEEFTKEFG 61
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 521-644 2.60e-05

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 44.59  E-value: 2.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766   521 SILLFGPRGTGKTLLGRCIASQL-GATFFKIAGSG------LVAKW-LGEAEKIIHASFLVARCRQPSVIFVSDIDMLLS 592
Cdd:pfam07728   1 GVLLVGPPGTGKTELAERLAAALsNRPVFYVQLTRdtteedLFGRRnIDPGGASWVDGPLVRAAREGEIAVLDEINRANP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 64084766   593 SQVNEEHSPVSRmRTEFLMQLDTVLTSAEDQIVVIcATSKP-----EEIDESLRRYF 644
Cdd:pfam07728  81 DVLNSLLSLLDE-RRLLLPDGGELVKAAPDGFRLI-ATMNPldrglNELSPALRSRF 135
RecA-like_BCS1 cd19510
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of ...
 520-642 1.39e-04

Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of mitochondrial respiratory chain complex III and plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex. RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410918 [Multi-domain]  Cd Length: 153  Bit Score: 42.72  E-value: 1.39e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 520 RSILLFGPRGTGKTLLGRCIASQLGATFFKIAGSGLVAkwlgEAEKIIHasfLVARCRQPSVIFVSDIDMLLSSQvneEH 599
Cdd:cd19510  24 RGYLLYGPPGTGKSSFIAALAGELDYDICDLNLSEVVL----TDDRLNH---LLNTAPKQSIILLEDIDAAFESR---EH 93

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|..
gi 64084766 600 SPVSRMRTEF---------LMQLDTVlTSAEDQIVVIcATSKPEEIDESLRR 642
Cdd:cd19510  94 NKKNPSAYGGlsrvtfsglLNALDGV-ASSEERIVFM-TTNHIERLDPALIR 143
RecA-like_Pch2-like cd19508
ATPase domain of Pachytene checkpoint 2 (Pch2) and similar ATPase domains; Pch2 (known as ...
 498-640 1.82e-04

ATPase domain of Pachytene checkpoint 2 (Pch2) and similar ATPase domains; Pch2 (known as Thyroid hormone receptor interactor 13 (TRIP13) and 16E1BP) is a key regulator of specific chromosomal events, like the control of G2/prophase processes such as DNA break formation and recombination, checkpoint signaling, and chromosome synapsis. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion


Pssm-ID: 410916 [Multi-domain]  Cd Length: 199  Bit Score: 43.20  E-value: 1.82e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 498 IKEEVLWPVLRSDAFS------GLTALPRSILLFGPRGTGKTLLGRCIASQLG---------ATFFKIAGSGLVAKWLGE 562
Cdd:cd19508  25 LKSRLLDYVTTTLLFSdknvntNLITWNRLVLLHGPPGTGKTSLCKALAQKLSirlssryryGQLIEINSHSLFSKWFSE 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 563 AEKIIHASF-----LVARCRQPSVIFVSDIDMLLSSQVN----EEHSPVSRMRTEFLMQLDTVLTSaeDQIVVICATSKP 633
Cdd:cd19508 105 SGKLVTKMFqkiqeLIDDKDALVFVLIDEVESLAAARSAsssgTEPSDAIRVVNAVLTQIDRIKRY--HNNVILLTSNLL 182


                ....*..
gi 64084766 634 EEIDESL 640
Cdd:cd19508 183 EKIDVAF 189
RecA-like_Lon cd19500
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ...
 521-593 3.87e-04

lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410908 [Multi-domain]  Cd Length: 182  Bit Score: 42.16  E-value: 3.87e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 521 SILLF-GPRGTGKTLLGRCIASQLGATFFKIAGSGLVakwlGEAE--------------KIIHAsFLVARCRQPsVIFVS 585
Cdd:cd19500  38 PILCLvGPPGVGKTSLGKSIARALGRKFVRISLGGVR----DEAEirghrrtyvgampgRIIQA-LKKAGTNNP-VFLLD 111


                ....*...
gi 64084766 586 DIDMLLSS 593
Cdd:cd19500 112 EIDKIGSS 119
SK cd00464
Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic ...
 521-548 4.33e-04

Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.


Pssm-ID: 238260 [Multi-domain]  Cd Length: 154  Bit Score: 41.39  E-value: 4.33e-04
                        10        20
                ....*....|....*....|....*...
gi 64084766 521 SILLFGPRGTGKTLLGRCIASQLGATFF 548
Cdd:cd00464   1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28
RecA-like_HslU cd19498
ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease ...
 518-604 7.72e-04

ATP-dependent protease ATPase subunit HslU; HslU is a component of the ATP-dependent protease HslVU. In HslVU, HslU ATPase serves to unfold and translocate protein substrate, and the HslV protease degrades the unfolded proteins. This RecA-like_HslU subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410906 [Multi-domain]  Cd Length: 183  Bit Score: 41.21  E-value: 7.72e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 64084766 518 LPRSILLFGPRGTGKTLLGRCIASQLGATFFKIAGS-----GLVAKwlgEAEKIIhasflvaRCRQPSVIFVSDIDMLLS 592
Cdd:cd19498  45 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATkftevGYVGR---DVESII-------RDLVEGIVFIDEIDKIAK 114

                        90
                ....*....|...
gi 64084766 593 SqvNEEHSP-VSR 604
Cdd:cd19498 115 R--GGSSGPdVSR 125
AAA_lid_3 pfam17862
AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the ...
 675-706 1.32e-03

AAA+ lid domain; This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains.


Pssm-ID: 465537 [Multi-domain]  Cd Length: 45  Bit Score: 37.13  E-value: 1.32e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 64084766   675 DKEFALLVQRTEGFSGLDVAHLCQEAVVGPLH 706
Cdd:pfam17862   1 DVDLEELAERTEGFSGADLEALCREAALAALR 32
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
 519-550 1.83e-03

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 41.22  E-value: 1.83e-03
                         10        20        30
                 ....*....|....*....|....*....|..
gi 64084766  519 PRSILLFGPRGTGKTLLGRCIASQLGATFFKI 550
Cdd:PRK13342  36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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