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Conserved domains on  [gi|24308215|ref|NP_065820|]
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retrotransposon Gag-like protein 9 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Retrotrans_gag super family cl46289
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ...
1189-1280 7.21e-06

Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.


The actual alignment was detected with superfamily member pfam03732:

Pssm-ID: 480629  Cd Length: 97  Bit Score: 45.79  E-value: 7.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   1189 LVSLHL-GAAERWF--ILQMEVGEPLSHEN--KSFLRRsqgiYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLAR-- 1261
Cdd:pfam03732    2 LAVHSLrGAALTWWksLVARSIDAFDSWDElkDAFLKR----FFPSIRKDLLRNELRSLRQGTESVREYVERFKRLARql 77
                           90       100
                   ....*....|....*....|
gi 24308215   1262 -HLSWSDAILRTRFLEGLSE 1280
Cdd:pfam03732   78 pHHGRDEEALISAFLRGLRP 97
Herpes_BLLF1 super family cl37540
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
281-641 2.40e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


The actual alignment was detected with superfamily member pfam05109:

Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 2.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    281 TSPQPTSTQNSGGIPTPLMSDLDSGIMSSLL-MSSPGSEVMStpllsvpdagemstlpkPAPDAEAMSPALMTALPSGVM 359
Cdd:pfam05109  474 TSPTPAGTTSGASPVTPSPSPRDNGTESKAPdMTSPTSAVTT-----------------PTPNATSPTPAVTTPTPNATS 536
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    360 PTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRATASGVMSAPPVRALDSgamSTPLMGAPASGNMSTLQKTVPAS--GAM 437
Cdd:pfam05109  537 PTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTT---PTPNATSPTVGETSPQANTTNHTlgGTS 613
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    438 TTSLMTVP---SSGVMSTEQMSATASRVMSAQL-------TMAKTSGAMPTGSMKAVAKQY----KRATASGKMSTPLRR 503
Cdd:pfam05109  614 STPVVTSPpknATSAVTTGQHNITSSSTSSMSLrpssiseTLSPSTSDNSTSHMPLLTSAHptggENITQVTPASTSTHH 693
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    504 APTSGAMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQMKAMTSGAMSTPLMTAQ 583
Cdd:pfam05109  694 VSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGAR 773
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 24308215    584 TSGSTSTLLMRDTASgvmscPQMRSLASGALSKPLMTPKASGTMFTEKMTTTASEAMP 641
Cdd:pfam05109  774 TSTEPTTDYGGDSTT-----PRTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATVP 826
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
139-349 1.89e-03

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.76  E-value: 1.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   139 SPGMMTIPDFGTMSATLMVAPDSAEISPLAMPAPSSGVVCTPIMSTSSSEA--------MSTPLMLAPDSGELSPILMQD 210
Cdd:PRK10263  282 ARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSwaapvepvTQTPPVASVDVPPAQPTVAWQ 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   211 MNPGVMSTQPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAVASGGTSPQPTSTQN 290
Cdd:PRK10263  362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24308215   291 SGGIP-TPLMSDLDSGIMSSLLMSSPGSE-VMSTPLLSVPDAGEMSTLPKPAPDAEAMSPA 349
Cdd:PRK10263  442 VAGNAwQAEEQQSTFAPQSTYQTEQTYQQpAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
793-1072 9.67e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 9.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   793 MSLPLMRA--PASGEIATP---LRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASggmsmplmRAPD 867
Cdd:PRK07003  350 MTLLRMLAfePAVTGGGAPgggVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA--------AAAT 421
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   868 SRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPLRRPSACETVSTELMRASASGHMSTAQTTAMVSG 947
Cdd:PRK07003  422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   948 GMSKPLMRA-----------PASGTMPMPLMSAMASGEMSMPLMETMASGATSTLQTSvansrSMSLSqttytvSGRMAT 1016
Cdd:PRK07003  502 ATPAAVPDArapaaasredaPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA-----GMRVS------SDRGAR 570
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 24308215  1017 APIRASASGARSTSFMRASVSGSMPMPLPRATASGCGM--GMSMPQMTATDSRGMSTP 1072
Cdd:PRK07003  571 AAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAppNGAARAEQAAESRGAPPP 628
 
Name Accession Description Interval E-value
Retrotrans_gag pfam03732
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ...
1189-1280 7.21e-06

Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.


Pssm-ID: 367628  Cd Length: 97  Bit Score: 45.79  E-value: 7.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   1189 LVSLHL-GAAERWF--ILQMEVGEPLSHEN--KSFLRRsqgiYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLAR-- 1261
Cdd:pfam03732    2 LAVHSLrGAALTWWksLVARSIDAFDSWDElkDAFLKR----FFPSIRKDLLRNELRSLRQGTESVREYVERFKRLARql 77
                           90       100
                   ....*....|....*....|
gi 24308215   1262 -HLSWSDAILRTRFLEGLSE 1280
Cdd:pfam03732   78 pHHGRDEEALISAFLRGLRP 97
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
281-641 2.40e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 2.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    281 TSPQPTSTQNSGGIPTPLMSDLDSGIMSSLL-MSSPGSEVMStpllsvpdagemstlpkPAPDAEAMSPALMTALPSGVM 359
Cdd:pfam05109  474 TSPTPAGTTSGASPVTPSPSPRDNGTESKAPdMTSPTSAVTT-----------------PTPNATSPTPAVTTPTPNATS 536
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    360 PTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRATASGVMSAPPVRALDSgamSTPLMGAPASGNMSTLQKTVPAS--GAM 437
Cdd:pfam05109  537 PTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTT---PTPNATSPTVGETSPQANTTNHTlgGTS 613
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    438 TTSLMTVP---SSGVMSTEQMSATASRVMSAQL-------TMAKTSGAMPTGSMKAVAKQY----KRATASGKMSTPLRR 503
Cdd:pfam05109  614 STPVVTSPpknATSAVTTGQHNITSSSTSSMSLrpssiseTLSPSTSDNSTSHMPLLTSAHptggENITQVTPASTSTHH 693
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    504 APTSGAMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQMKAMTSGAMSTPLMTAQ 583
Cdd:pfam05109  694 VSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGAR 773
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 24308215    584 TSGSTSTLLMRDTASgvmscPQMRSLASGALSKPLMTPKASGTMFTEKMTTTASEAMP 641
Cdd:pfam05109  774 TSTEPTTDYGGDSTT-----PRTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATVP 826
PRK10263 PRK10263
DNA translocase FtsK; Provisional
139-349 1.89e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.76  E-value: 1.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   139 SPGMMTIPDFGTMSATLMVAPDSAEISPLAMPAPSSGVVCTPIMSTSSSEA--------MSTPLMLAPDSGELSPILMQD 210
Cdd:PRK10263  282 ARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSwaapvepvTQTPPVASVDVPPAQPTVAWQ 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   211 MNPGVMSTQPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAVASGGTSPQPTSTQN 290
Cdd:PRK10263  362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24308215   291 SGGIP-TPLMSDLDSGIMSSLLMSSPGSE-VMSTPLLSVPDAGEMSTLPKPAPDAEAMSPA 349
Cdd:PRK10263  442 VAGNAwQAEEQQSTFAPQSTYQTEQTYQQpAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
793-1072 9.67e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 9.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   793 MSLPLMRA--PASGEIATP---LRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASggmsmplmRAPD 867
Cdd:PRK07003  350 MTLLRMLAfePAVTGGGAPgggVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA--------AAAT 421
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   868 SRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPLRRPSACETVSTELMRASASGHMSTAQTTAMVSG 947
Cdd:PRK07003  422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   948 GMSKPLMRA-----------PASGTMPMPLMSAMASGEMSMPLMETMASGATSTLQTSvansrSMSLSqttytvSGRMAT 1016
Cdd:PRK07003  502 ATPAAVPDArapaaasredaPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA-----GMRVS------SDRGAR 570
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 24308215  1017 APIRASASGARSTSFMRASVSGSMPMPLPRATASGCGM--GMSMPQMTATDSRGMSTP 1072
Cdd:PRK07003  571 AAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAppNGAARAEQAAESRGAPPP 628
 
Name Accession Description Interval E-value
Retrotrans_gag pfam03732
Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a ...
1189-1280 7.21e-06

Retrotransposon gag protein; Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.


Pssm-ID: 367628  Cd Length: 97  Bit Score: 45.79  E-value: 7.21e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   1189 LVSLHL-GAAERWF--ILQMEVGEPLSHEN--KSFLRRsqgiYDSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLAR-- 1261
Cdd:pfam03732    2 LAVHSLrGAALTWWksLVARSIDAFDSWDElkDAFLKR----FFPSIRKDLLRNELRSLRQGTESVREYVERFKRLARql 77
                           90       100
                   ....*....|....*....|
gi 24308215   1262 -HLSWSDAILRTRFLEGLSE 1280
Cdd:pfam03732   78 pHHGRDEEALISAFLRGLRP 97
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
281-641 2.40e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 45.68  E-value: 2.40e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    281 TSPQPTSTQNSGGIPTPLMSDLDSGIMSSLL-MSSPGSEVMStpllsvpdagemstlpkPAPDAEAMSPALMTALPSGVM 359
Cdd:pfam05109  474 TSPTPAGTTSGASPVTPSPSPRDNGTESKAPdMTSPTSAVTT-----------------PTPNATSPTPAVTTPTPNATS 536
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    360 PTQTMPAPGSGAMSPWSTQNVDSEMMSNPPVRATASGVMSAPPVRALDSgamSTPLMGAPASGNMSTLQKTVPAS--GAM 437
Cdd:pfam05109  537 PTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTT---PTPNATSPTVGETSPQANTTNHTlgGTS 613
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    438 TTSLMTVP---SSGVMSTEQMSATASRVMSAQL-------TMAKTSGAMPTGSMKAVAKQY----KRATASGKMSTPLRR 503
Cdd:pfam05109  614 STPVVTSPpknATSAVTTGQHNITSSSTSSMSLrpssiseTLSPSTSDNSTSHMPLLTSAHptggENITQVTPASTSTHH 693
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    504 APTSGAMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQMRTMASGLTSAAQMKAMTSGAMSTPLMTAQ 583
Cdd:pfam05109  694 VSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGGKANSTTGGKHTTGHGAR 773
                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 24308215    584 TSGSTSTLLMRDTASgvmscPQMRSLASGALSKPLMTPKASGTMFTEKMTTTASEAMP 641
Cdd:pfam05109  774 TSTEPTTDYGGDSTT-----PRTRYNATTYLPPSTSSKLRPRWTFTSPPVTTAQATVP 826
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
418-770 9.19e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 9.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    418 APASGNMSTLQKTVPASGAMTTSLMTVPSSGVMSTEQMSATASRVMSAQLTMAKTSGAMPTGSMKAVAKQYKRATasgKM 497
Cdd:pfam17823   21 APADPRHFVLNKMWNGAGKQNASGDAVPRADNKSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGT---DL 97
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    498 STPLRRAPTS-GAMSTQPVTATASETMSMPQLTVPASGSMSMLQMRAPVSEAMSMPQmrTMASGLTSAAQMKAMTSGAMS 576
Cdd:pfam17823   98 SEPATREGAAdGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANA--SAAPRAAIAAASAPHAASPAP 175
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    577 TPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKASGTMFTEKMTTTASEAmptllmrDTVSGALSMP 656
Cdd:pfam17823  176 RTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAA-------GTVTAAVGTV 248
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215    657 QMTDTASGGLSASLMRDTASGAMSTSQMTATVSGGMSMPlmrAQDPGVMPASLMRAKVSGKmLSQPMSTQDPGGMSMSPM 736
Cdd:pfam17823  249 TPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKHMP---SDTMARNPAAPMGAQAQGP-IIQVSTDQPVHNTAGEPT 324
                          330       340       350
                   ....*....|....*....|....*....|....
gi 24308215    737 KSMTAGGMQMNSPTSDVMSTPTVRAWTSETMSTP 770
Cdd:pfam17823  325 PSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEP 358
PRK10263 PRK10263
DNA translocase FtsK; Provisional
139-349 1.89e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.76  E-value: 1.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   139 SPGMMTIPDFGTMSATLMVAPDSAEISPLAMPAPSSGVVCTPIMSTSSSEA--------MSTPLMLAPDSGELSPILMQD 210
Cdd:PRK10263  282 ARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSwaapvepvTQTPPVASVDVPPAQPTVAWQ 361
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   211 MNPGVMSTQPVPAPSSEAMSPLQITDEDTEAMSKVLMTALASGEISSLLMSGTDSEAISSLIMSAVASGGTSPQPTSTQN 290
Cdd:PRK10263  362 PVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 24308215   291 SGGIP-TPLMSDLDSGIMSSLLMSSPGSE-VMSTPLLSVPDAGEMSTLPKPAPDAEAMSPA 349
Cdd:PRK10263  442 VAGNAwQAEEQQSTFAPQSTYQTEQTYQQpAAQEPLYQQPQPVEQQPVVEPEPVVEETKPA 502
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
793-1072 9.67e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 9.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   793 MSLPLMRA--PASGEIATP---LRSPAYGAMSAPQMTATASGMMSSMPQVKAPISGAMSMPLTRSTASggmsmplmRAPD 867
Cdd:PRK07003  350 MTLLRMLAfePAVTGGGAPgggVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAA--------AAAT 421
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   868 SRVTSTSQMMPTASGDMCTLPVRAPASGGVSSPLVRAPASGTMSTPLRRPSACETVSTELMRASASGHMSTAQTTAMVSG 947
Cdd:PRK07003  422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSA 501
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24308215   948 GMSKPLMRA-----------PASGTMPMPLMSAMASGEMSMPLMETMASGATSTLQTSvansrSMSLSqttytvSGRMAT 1016
Cdd:PRK07003  502 ATPAAVPDArapaaasredaPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNA-----GMRVS------SDRGAR 570
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 24308215  1017 APIRASASGARSTSFMRASVSGSMPMPLPRATASGCGM--GMSMPQMTATDSRGMSTP 1072
Cdd:PRK07003  571 AAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAppNGAARAEQAAESRGAPPP 628
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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