|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
313-1049 |
6.81e-31 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 131.74 E-value: 6.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 313 LERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFI-QCQLIEGQLQDADQQLEFLNEIQQsi 391
Cdd:TIGR02917 79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 392 gKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQY-FEKLNPDFLLEIVMEYLSFCPMQPAspgqpl 470
Cdd:TIGR02917 157 -RSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 471 cPLLRRCISVL------------ETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLS 538
Cdd:TIGR02917 229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 539 QEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAmslpgmkrigastkskDRKTEVDTSHRLS 618
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPA----------------LGLDPDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 619 IFLELIDvhrlNGEQHEATKVLQDAihefsgTSEEVRVTIANADLA---LAQGDIERALSILQNVTAEQPYFIEAREKMA 695
Cdd:TIGR02917 369 LGEAYLA----LGDFEKAAEYLAKA------TELDPENAAARTQLGiskLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 696 DIYLK-HRKDKMLYITcfREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYS 773
Cdd:TIGR02917 439 LSYLRsGQFDKALAAA--KKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 774 MAITYYEAALKTGQKNY-LCYDLAELLLK-------LKWYDKA--------EKVLQHALAHEPVNELS---ALMED---- 830
Cdd:TIGR02917 517 DAIQRFEKVLTIDPKNLrAILALAGLYLRtgneeeaVAWLEKAaelnpqeiEPALALAQYYLGKGQLKkalAILNEaada 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 831 -----------GRCQ---------------------------VLLAKVYSKMEKLGDAITALQQARELQA--RVLKRVQM 870
Cdd:TIGR02917 597 apdspeawlmlGRAQlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPdnTEAQIGLA 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 871 ------EQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLeLARLYLAQDDPDSC 937
Cdd:TIGR02917 677 qlllaaKRTESakkiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 938 LRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLrrcGKLEDvPRFFSMAEKRNS 1017
Cdd:TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY---LELKD-PRALEYAERALK 831
|
810 820 830
....*....|....*....|....*....|..
gi 116089292 1018 RAKLEPGFQYCKGLYLWYTGEPNDALRHFNKA 1049
Cdd:TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
724-1016 |
7.05e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 108.66 E-value: 7.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 724 SFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKL 802
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 803 KWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARvlkrvqmeqpdavpaqkhl 882
Cdd:COG2956 90 GLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------------------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 883 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 962
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 116089292 963 FRKQDYEQAVFHLQQLLERKPDNYMTLsRLIDLLRRCGKLEDVPRFFSMAEKRN 1016
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
48-820 |
3.77e-25 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 113.25 E-value: 3.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 48 LMEGKTQEALREFEAIKNKQDVSLCSLLALI-YAHKMSPNPDREAILESDARVKEQRKGagekalyHAGLFLWHI----G 122
Cdd:TIGR02917 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDPRSL-------YAKLGLAQLalaeN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 123 RHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKEP-----YTKKA-------------------LKYFEEGLQDG--- 175
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIElalaaYRKAIalrpnniavllalatilieAGEFEEAEKHAdal 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 176 -----NDTFALLGKAQCLEMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALR 250
Cdd:TIGR02917 254 lkkapNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARR 333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 251 MQALYYVcREGDIEKASTKLenlgNTLDAMEPQNAQLFyniTLAFSRTCGRSQliLQKIQTLLERAFSLNPQQSEFATEL 330
Cdd:TIGR02917 334 LLASIQL-RLGRVDEAIATL----SPALGLDPDDPAAL---SLLGEAYLALGD--FEKAAEYLAKATELDPENAAARTQL 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 331 GYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLiegQLQDADQQLEFLNEIQQSIGKSAELIYLHAVLAMKKNK 410
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL---RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 411 RQEEVinllndvldthfsqleglplgiQYFEK---LNPDFLLEIVmeYLSFCPMQPASPGQplcpllrrCISVLETVVRT 487
Cdd:TIGR02917 481 LAKAR----------------------EAFEKalsIEPDFFPAAA--NLARIDIQEGNPDD--------AIQRFEKVLTI 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 488 VPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCLSYDFKVRDYPLYHL 567
Cdd:TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK---KALAILNEAADAAPDSPEAWL 605
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 568 IKAQSQKKMGEIADAIKTLhmamslpgmkrigastkskdRKTEVDTSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEF 647
Cdd:TIGR02917 606 MLGRAQLAAGDLNKAVSSF--------------------KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 648 SGTseeVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKhRKDKMLYITCFREIAERMANPRSFLL 727
Cdd:TIGR02917 666 PDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR-QKDYPAAIQAYRKALKRAPSSQNAIK 741
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 728 LGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELLLKLKwYD 806
Cdd:TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLnNLAWLYLELK-DP 820
|
810
....*....|....
gi 116089292 807 KAEKVLQHALAHEP 820
Cdd:TIGR02917 821 RALEYAERALKLAP 834
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
499-1303 |
7.00e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 92.84 E-value: 7.00e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 499 AKVKYLS-GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLElclsydfkvrdyplyhliKAQSQKkmg 577
Cdd:TIGR02917 28 AAKSYLQkNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELR------------------KALSLG--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 578 eiadaiktLHMAMSLPGMKRIGASTKSKDR------KTEVDTSHRLSIFLELI-DVHRLNGEQHEATKVLQDAIhEFSGT 650
Cdd:TIGR02917 87 --------YPKNQVLPLLARAYLLQGKFQQvldelpGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQAL-AIDPR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 651 SEEVRvtIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADiYLKHRKDKMLYITCFREIAE-RMANPRSFLLLG 729
Cdd:TIGR02917 158 SLYAK--LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD-LLLSLGNIELALAAYRKAIAlRPNNIAVLLALA 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 730 DAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALI--KTHNYSMAITYYEAALKTGQKNYLCYDLAEL-LLKLKWYD 806
Cdd:TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN--SPLAHYLKALVdfQKKNYEDARETLQDALKSAPEYLPALLLAGAsEYQLGNLE 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 807 KAEKVLQHALAHEPVNELSALMedgrcqvlLAKVYSKMEKLGDAITALQQARELQAR------VLKRVQMEQPDAVPAQK 880
Cdd:TIGR02917 313 QAYQYLNQILKYAPNSHQARRL--------LASIQLRLGRVDEAIATLSPALGLDPDdpaalsLLGEAYLALGDFEKAAE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 881 HL--AAEICAEIAKHS-------VAQRDYEKAIKFYREALvhcETDNKIM---LELARLYLAQDDPDSCLRQCALLLQSD 948
Cdd:TIGR02917 385 YLakATELDPENAAARtqlgiskLSQGDPSEAIADLETAA---QLDPELGradLLLILSYLRSGQFDKALAAAKKLEKKQ 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 949 QDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNsrAKLEPGFQYC 1028
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILAL 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1029 KGLYLwYTGEPNDALRHFNKARKdrdwgqnalynmieicLNPDNEtvggevfeNLDGDLGNSTEKQESVQLAVRTAEKLL 1108
Cdd:TIGR02917 540 AGLYL-RTGNEEEAVAWLEKAAE----------------LNPQEI--------EPALALAQYYLGKGQLKKALAILNEAA 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1109 KeLKPQTVQGHVQLrimenycLMATKQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRiaKMNW 1188
Cdd:TIGR02917 595 D-AAPDSPEAWLML-------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALEL 664
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1189 NaidaEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYSNRTNPAV 1268
Cdd:TIGR02917 665 K----PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740
|
810 820 830
....*....|....*....|....*....|....*
gi 116089292 1269 gyKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIR 1303
Cdd:TIGR02917 741 --KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
88-784 |
1.68e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 91.68 E-value: 1.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 88 DREAILESDARVKEQRKGAgEKALYHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKepyTKKALKY 167
Cdd:TIGR02917 208 NIELALAAYRKAIALRPNN-IAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN---YEDARET 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 168 FEEGLQDGNDTFALLGKAQCLEMRQ-NYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNV 246
Cdd:TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLgNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 247 EALRMQALYYVcREGDIEKASTKLENLGntldAMEPQNAQLfyNITLAFSRTC---------------------GRSQLI 305
Cdd:TIGR02917 364 AALSLLGEAYL-ALGDFEKAAEYLAKAT----ELDPENAAA--RTQLGISKLSqgdpseaiadletaaqldpelGRADLL 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 306 L-------QKIQTLLERAFSLNPQQSEFATE---LGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQ 375
Cdd:TIGR02917 437 LilsylrsGQFDKALAAAKKLEKKQPDNASLhnlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 376 DADQQLEflnEIQQSIGKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPdflleivmey 455
Cdd:TIGR02917 517 DAIQRFE---KVLTIDPKNLRAILALAGLYLRTG-NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ---------- 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 456 lsfcpmqpaspgqplcplLRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQV 535
Cdd:TIGR02917 583 ------------------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 536 YLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHM--------AMSLPGMKRIGASTKS-KD 606
Cdd:TIGR02917 645 YAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLLAAKRTESAKKIAKSlqkqhpkaALGFELEGDLYLRQKDyPA 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 607 RKTEVDTSHRLS----IFLELIDVHRLNGEQHEATKVLQDAIHEfsgTSEEVRVTIANADLALAQGDIERALSILQNVTA 682
Cdd:TIGR02917 722 AIQAYRKALKRApssqNAIKLHRALLASGNTAEAVKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 683 EQPYFIEAREKMADIYLKHRKDKMLyitcfrEIAERM-----ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGT 757
Cdd:TIGR02917 799 KAPDNAVVLNNLAWLYLELKDPRAL------EYAERAlklapNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA 872
|
730 740
....*....|....*....|....*..
gi 116089292 758 LASKMGKALIKTHNYSMAITYYEAALK 784
Cdd:TIGR02917 873 IRYHLALALLATGRKAEARKELDKLLN 899
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
503-819 |
9.53e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 9.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 503 YLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADA 582
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 583 IKTLHMAMSLPgmkrigastkskdrktevdtSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEfsgTSEEVRVTIANAD 662
Cdd:COG2956 96 EELLEKLLELD--------------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL---GPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 663 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKdkmlyitcfreiaermanprsflllgdaymnilePEEAI 742
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD----------------------------------YEEAI 198
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116089292 743 VAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHE 819
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
504-1270 |
4.07e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 87.45 E-value: 4.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 504 LSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDFKVRDyplYHLIKAQSQKKMGEIADAI 583
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD---ALLLKGDLLLSLGNIELAL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 584 KTLHMAMSL-PG--MKRIGAST----KSKDRKTEVDTSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEF-----SGTS 651
Cdd:TIGR02917 214 AAYRKAIALrPNniAVLLALATilieAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLqdalkSAPE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 652 EEVRVTIANAdLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDA 731
Cdd:TIGR02917 294 YLPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 732 YMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKtgqknyLCYDL--AELLL-----KLKW 804
Cdd:TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ------LDPELgrADLLLilsylRSGQ 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 805 YDKAEKVLQHALAHEPVNELSalmedgrcQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQkhlaa 884
Cdd:TIGR02917 447 FDKALAAAKKLEKKQPDNASL--------HNLLGAIYLGKGDLAKAREAFEKALSI-----------EPDFFPAA----- 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 885 eicAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFR 964
Cdd:TIGR02917 503 ---ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 965 KQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSraklepgfqyckglylwYTGEPNDALR 1044
Cdd:TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-----------------DSALALLLLA 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1045 HFNKARKDRDWGQNALYNMIEIclNPDNetvggEVFENLDGDLGNSTEKQESvqlavrtAEKLLKELKPQTVQGHVQLRI 1124
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALEL--KPDN-----TEAQIGLAQLLLAAKRTES-------AKKIAKSLQKQHPKAALGFEL 708
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1125 mENYCLMATKQKSNVEQALNTFTEIAASEKehipALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEefekswLLLA 1204
Cdd:TIGR02917 709 -EGDLYLRQKDYPAAIQAYRKALKRAPSSQ----NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR------TALA 777
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116089292 1205 DIYIQSAKYDMAEdllkrclrhnrsccKAYEymgYIMEKEQAYTdAALNyEMAWKYSNRTNP-AVGY 1270
Cdd:TIGR02917 778 ELYLAQKDYDKAI--------------KHYQ---TVVKKAPDNA-VVLN-NLAWLYLELKDPrALEY 825
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
922-1254 |
2.40e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.93 E-value: 2.40e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 922 LELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRcgk 1001
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1002 ledvprffsmaekrnsraklepgfqyckglylwyTGEPNDALRHFNKARKDRDWGQNALYNMIEIClnpdnetvggevfe 1081
Cdd:COG2956 89 ----------------------------------AGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1082 nldgdlgnstEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLRimenyclMATKQKSNVEQALNTFTEIAASEKEHIPALL 1161
Cdd:COG2956 121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1162 GMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIM 1241
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
330
....*....|...
gi 116089292 1242 EKEQAytDAALNY 1254
Cdd:COG2956 257 RKEGL--EAALAL 267
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
726-863 |
3.12e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.99 E-value: 3.12e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 726 LLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YLCYDLAELLLKLKW 804
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEpEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 116089292 805 YDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQAR 863
Cdd:COG4783 88 YDEALALLEKALKLDP--------EHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
112-426 |
3.20e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.38 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 112 YHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKepyTKKALKYFEEGLQ-DGNDTFALLGKAQCLEM 190
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGE---YDRAIRIHQKLLErDPDRAEALLELAQDYLK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 191 RQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKAstkl 270
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYL-EQGDYDEA---- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 271 enlgntldamepqnaqlfynitlafsrtcgrsqlilqkiQTLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTA 350
Cdd:COG2956 164 ---------------------------------------IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA 204
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116089292 351 MTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSIGKSAELIYLHAVLAmkKNKRQEEVINLLNDVLDTH 426
Cdd:COG2956 205 LEQDPDYLPALPRLAELYEKLGDPEEA---LELLRKALELDPSDDLLLALADLLE--RKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
804-1033 |
8.23e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 76.19 E-value: 8.23e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 804 WYDKAEKVLQHALAHEPVNELSALMEdgrcqvLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLA 883
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALA------AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 884 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 963
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 964 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGFQYCKGLYL 1033
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA------LELDPDNADAHSNLL 221
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
709-932 |
1.61e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.96 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 709 ITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQ 787
Cdd:COG0457 28 IEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 788 KNYLCYD-LAELLLKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARVLK 866
Cdd:COG0457 108 DDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 116089292 867 RVQMEQPDAVPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQD 932
Cdd:COG0457 180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
721-982 |
3.57e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.81 E-value: 3.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 721 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELL 799
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALnNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 800 LKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQ 879
Cdd:COG0457 87 QALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALELD-----------PDDADAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 880 KHLAAEICAeiakhsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMA 959
Cdd:COG0457 148 YNLGIALEK--------LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
250 260
....*....|....*....|...
gi 116089292 960 DLMFRKQDYEQAVFHLQQLLERK 982
Cdd:COG0457 220 AELLLLALALLLALRLAALALYQ 242
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
731-1057 |
4.16e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 4.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 731 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAIT-YYEAALKTGQKNYLCYDLAELLLKLKWYDKAE 809
Cdd:COG3914 19 AAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGeAAAAAAALLLLAALLELAALLLQALGRYEEAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 810 KVLQHALAHEPvNELSALmedgrcqVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaE 889
Cdd:COG3914 99 ALYRRALALNP-DNAEAL-------FNLGNLLLALGRLEEALAALRRALALN-----------PDFAEAYLNLG-----E 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 890 IAKHsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQddpdsclrqcalllqsdqdneaatmmmadlmfrkQDYE 969
Cdd:COG3914 155 ALRR---LGRLEEAIAALRRALELDPDNAEALNNLGNALQDL----------------------------------GRLE 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 970 QAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFfsmaekRNSRAKLEPGFQYCKGLYLWYTGEpNDALRHFNKA 1049
Cdd:COG3914 198 EAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF------EELLAALARGPSELSPFALLYLPD-DDPAELLALA 270
|
....*...
gi 116089292 1050 RKdrdWGQ 1057
Cdd:COG3914 271 RA---WAQ 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
182-456 |
4.17e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 4.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 182 LGKAQCLEMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREG 261
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL-KAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 262 DIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQSEFATELGYQMILQGRVK 341
Cdd:COG2956 91 LLDRA----EELLEKLLELDPDDAEALRLLAEIYEQE-GD----WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 342 EALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSIGKSAELIYLHAVLAMKKNkRQEEVINLLND 421
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA---IAALERALEQDPDYLPALPRLAELYEKLG-DPEEALELLRK 237
|
250 260 270
....*....|....*....|....*....|....*
gi 116089292 422 VLDTHFSQLEGLPLGIQYFEKLNPDFLLEIVMEYL 456
Cdd:COG2956 238 ALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
658-1300 |
4.20e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.35 E-value: 4.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 658 IANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKH-------------------RKDKMLYIT-------C 711
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALgdyaaaekelrkalslgypKNQVLPLLArayllqgK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 712 FREIAERMANPRS---------FLLLGDAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALIKT--HNYSMAITYYE 780
Cdd:TIGR02917 106 FQQVLDELPGKTLlddegaaelLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALaeNRFDEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 781 AALKTGQKNYLCYDL-AELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGrcqVLL-AKVYSKMEKlgDAITALQQAR 858
Cdd:TIGR02917 184 EVLTADPGNVDALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT---ILIeAGEFEEAEK--HADALLKKAP 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 859 -ELQARVLK-RVQMEQPDAVPAQKHLAAEICAE----IAKH-----SVAQRDYEKAIKFYREALVHCETDNKIMLELARL 927
Cdd:TIGR02917 259 nSPLAHYLKaLVDFQKKNYEDARETLQDALKSApeylPALLlagasEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 928 YLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPR 1007
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1008 FFSMAEKRNS---RAKLEPGFQYC------KGLYL---WYTGEPNDALRHFNKA-----RKDRDWGQNALYNMIEIclNP 1070
Cdd:TIGR02917 419 DLETAAQLDPelgRADLLLILSYLrsgqfdKALAAakkLEKKQPDNASLHNLLGaiylgKGDLAKAREAFEKALSI--EP 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1071 DNETVGGEvfenldgdLGNSTEKQESVQLAVRTAEKLLKELkPQTVQGHVQLRIMENyclmatkQKSNVEQALNTFTEIA 1150
Cdd:TIGR02917 497 DFFPAAAN--------LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL-------RTGNEEEAVAWLEKAA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1151 ASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKmnwNAIDAEEFeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSC 1230
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSPEA---WLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116089292 1231 CKAYEYMGYIMEKEQAYTDAALNYE--MAWKYSNRTNPAVgykLAFNYLKAKRYVDSIDICHQVLEAHPTYP 1300
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKraLELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
722-1298 |
1.15e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.81 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 722 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGtlaskmgkalikthnysmaityyEAalktgqkNYLcydLAELLLK 801
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA-----------------------EA-------RFL---LGKIYLA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 802 LKWYDKAEKVLQHALahepvnelSALMEDGRCQVLLAKVYSKMEKLGDAITalqqarelqarvlkrvQMEQPDAVPAQkh 881
Cdd:TIGR02917 69 LGDYAAAEKELRKAL--------SLGYPKNQVLPLLARAYLLQGKFQQVLD----------------ELPGKTLLDDE-- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 882 LAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 961
Cdd:TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 962 MFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPrffSMAEKRNSRAKLEPGFQYCKGLYLWYTGEPND 1041
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE---KHADALLKKAPNSPLAHYLKALVDFQKKNYED 279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1042 ALRHFNKARKDRDWGQNALY--NMIEICLNpDNETVGGEVFENLDGDLGNSTEKQ--ESVQLAVRTAEKLLKELKP--QT 1115
Cdd:TIGR02917 280 ARETLQDALKSAPEYLPALLlaGASEYQLG-NLEQAYQYLNQILKYAPNSHQARRllASIQLRLGRVDEAIATLSPalGL 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1116 VQGHVQLRIMENYCLMATKQKSNVEQALNTFTEIaASEKEHIPALLGMatAYMILKQTPRARNQLKRIAKMNWNAIDAEe 1195
Cdd:TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGI--SKLSQGDPSEAIADLETAAQLDPELGRAD- 434
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1196 fekswLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1275
Cdd:TIGR02917 435 -----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAAANLARI 508
|
570 580
....*....|....*....|...
gi 116089292 1276 YLKAKRYVDSIDICHQVLEAHPT 1298
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK 531
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
651-820 |
6.18e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 6.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 651 SEEVRVTIANADLALAQGDIERALSILQNVTAEQPYfiearekmadiylkhrkdkmlyitcfreiaermaNPRSFLLLGD 730
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD----------------------------------NPEAFALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 731 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYD-LAELLLKLKWYDKAE 809
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLrLARAYRALGRPDEAI 126
|
170
....*....|.
gi 116089292 810 KVLQHALAHEP 820
Cdd:COG4783 127 AALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1087-1297 |
8.30e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 8.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1087 LGNSTEKQESVQLAVRTAEKLLkELKPQTVQGHVQLrimenyCLMATKQKsNVEQALNTFTEIAASEKEHIPALLGMATA 1166
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLL-ERDPDRAEALLEL------AQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1167 YMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQA 1246
Cdd:COG2956 120 YEQEGDWEKAIEVLERLLKLGPENAHA------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 116089292 1247 YTDAALNYEMAWKySNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1297
Cdd:COG2956 194 YEEAIAALERALE-QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
659-820 |
1.70e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.87 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 659 ANADLALAQGDIERALSILQNVTAEQPYFIEAREkmadiyLKHRKDKMLYITCFREIAERM-ANPRSFLLLGDAYMNILE 737
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALL------LQALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 738 PEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKLKWYDKAEKVLQHAL 816
Cdd:COG3914 128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALElDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
....
gi 116089292 817 AHEP 820
Cdd:COG3914 208 ELDP 211
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
721-829 |
1.79e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.72 E-value: 1.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 721 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC-YDLAELL 799
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAlYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|
gi 116089292 800 LKLKWYDKAEKVLQHALAHEPVNELSALME 829
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
626-1047 |
1.52e-10 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 65.87 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 626 VHRLNGEQHEATKVLQdAIHEFSGTSEEVRVTIANadLALAQGDIERALSILQNVtAEQPyfiEAREKMADIYLKHRKDK 705
Cdd:PRK11447 156 VAKLPAQRPEAINQLQ-RLNADYPGNTGLRNTLAL--LLFSSGRRDEGFAVLEQM-AKSP---AGRDAAAQLWYGQIKDM 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 706 ML----------YITCFREiAERMANPRSFL-----LLGD-AYMNILE---------PEEAIVAYEQALNQNPKDGTLAS 760
Cdd:PRK11447 229 PVsdasvaalqkYLQVFSD-GDSVAAARSQLaeqqkQLADpAFRARAQglaavdsgqGGKAIPELQQAVRANPKDSEALG 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 761 KMGKALIKTHNYSMAITYYEAALKTGQKNYlcydlaelllklkWYDKAEKVLQhalahepVNELSALMEDGRcQVLLAKV 840
Cdd:PRK11447 308 ALGQAYSQQGDRARAVAQFEKALALDPHSS-------------NRDKWESLLK-------VNRYWLLIQQGD-AALKANN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 841 YSKMEKLgdaitaLQQARelqarvlkrvQMEQPDAvpaqkhLAAEICAEIAkhsVAQRDYEKAIKFYREALvHCETDNKI 920
Cdd:PRK11447 367 LAQAERL------YQQAR----------QVDNTDS------YAVLGLGDVA---MARKDYAAAERYYQQAL-RMDPGNTN 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 921 MLE-LARLYLAQDdPDSCLRQCALLLQSDQ----DNEAATMM-----MADLMFRKQDYEQAVFHLQQLLERKPDNYMTLS 990
Cdd:PRK11447 421 AVRgLANLYRQQS-PEKALAFIASLSASQRrsidDIERSLQNdrlaqQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 116089292 991 RLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFN 1047
Cdd:PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLN 553
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1100-1316 |
1.96e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.21 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1100 AVRTAEKLLkELKPQTVQGHVQL-RIMEnyclmatkQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARN 1178
Cdd:COG2956 27 AIDLLEEAL-ELDPETVEAHLALgNLYR--------RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1179 QLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAW 1258
Cdd:COG2956 98 LLEKLLELDPDDAEA------LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 116089292 1259 KYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILDKARASLRP 1316
Cdd:COG2956 172 KL-DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
883-1016 |
4.46e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 4.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 883 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 962
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 116089292 963 FRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRN 1016
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
884-985 |
1.30e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 884 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 963
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|..
gi 116089292 964 RKQDYEQAVFHLQQLLERKPDN 985
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPAD 118
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
48-273 |
1.53e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 60.51 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 48 LMEGKTQEALREFEAI--KNKQDVSLCSLLALIYAHKMspNPDR-EAILESDARVKEQRkgagEKALYHAGLFLWHIGRH 124
Cdd:COG2956 19 LLNGQPDKAIDLLEEAleLDPETVEAHLALGNLYRRRG--EYDRaIRIHQKLLERDPDR----AEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 125 DKAREYIDRMIKISDGSKQghVLKAWLDITRGKEPYtKKALKYFEEGLQ-DGNDTFALLGKAQCLEMRQNYSGALETVNQ 203
Cdd:COG2956 93 DRAEELLEKLLELDPDDAE--ALRLLAEIYEQEGDW-EKAIEVLERLLKlGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 204 IIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKASTKLENL 273
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE-KLGDPEEALELLRKA 238
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
921-1051 |
1.58e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.51 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 921 MLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCG 1000
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 116089292 1001 KLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFNKARK 1051
Cdd:COG4783 87 DYDEALALLEKALKLDPE---HPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
749-981 |
4.84e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.48 E-value: 4.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 749 LNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY-LCYDLAELLLKLKWYDKAEKVLQHALAHEPvnelsal 827
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 828 mEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaEICAEiakhsvaQRDYEKAIKFY 907
Cdd:COG0457 74 -DDAEALNNLGLALQALGRYEEALEDYDKALELD-----------PDDAEALYNLG-LALLE-------LGRYDEAIEAY 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116089292 908 REALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLER 981
Cdd:COG0457 134 ERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
837-1022 |
6.21e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.09 E-value: 6.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 837 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaeIAKHsvAQRDYEKAIKFYREALVHCET 916
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELD-----------PDDAEALYNLG------LAYL--RLGRYEEALADYEQALELDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 917 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLL 996
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
170 180
....*....|....*....|....*.
gi 116089292 997 RRCGKLEDVPRFFSMAEKRNSRAKLE 1022
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLA 180
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
626-859 |
1.25e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.32 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 626 VHRLNGEQHEATKVLQDAIhEFSGTSEEVRVTIANAdlALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDK 705
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKAL-ELDPDDAEALYNLGLA--YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 706 MlYITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 784
Cdd:COG0457 94 E-ALEDYDKaLELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089292 785 tgQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGRCQVLLAKVYSKMEKLGDAITALQQARE 859
Cdd:COG0457 173 --AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
713-821 |
4.08e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.81 E-value: 4.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 713 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YL 791
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNA 124
|
90 100 110
....*....|....*....|....*....|
gi 116089292 792 CYDLAELLLKLKWYDKAEKVLQHALAHEPV 821
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
837-985 |
6.52e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 6.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 837 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQkhlaaeicAEIAKHSVAQRDYEKAIKFYREALVHCET 916
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELD-----------PDNPEAF--------ALLGEILLQLGDLDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 116089292 917 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN 985
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
731-820 |
6.96e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 6.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 731 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 810
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 116089292 811 VLQHALAHEP 820
Cdd:COG3063 81 YLERALELDP 90
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
898-1008 |
7.64e-08 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 56.36 E-value: 7.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 898 RDYEKAIKFYREALVHCETDNKIML-----ELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAV 972
Cdd:PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234
|
90 100 110
....*....|....*....|....*....|....*..
gi 116089292 973 FHLQQLLERKPDnYMTLsrLIDLLRRC-GKLEDVPRF 1008
Cdd:PRK11788 235 EALERVEEQDPE-YLSE--VLPKLMECyQALGDEAEG 268
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1140-1315 |
9.18e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.63 E-value: 9.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1140 EQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDL 1219
Cdd:COG0457 25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA------LNNLGLALQALGRYEEALED 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1220 LKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 1299
Cdd:COG0457 99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177
|
170
....*....|....*.
gi 116089292 1300 PKIRKDILDKARASLR 1315
Cdd:COG0457 178 LLAAALGEAALALAAA 193
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
607-753 |
1.90e-07 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 54.81 E-value: 1.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 607 RKTEVDTSHRLSIFL-ELIDVHRLNGEQHEATKVLQDAIHEFSGTseeVRVTIANADLALAQGDIERALSILQNVTAEQP 685
Cdd:PRK11788 169 KLGGDSLRVEIAHFYcELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDP 245
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 686 -YFIEAREKMADIYLK-HRKDKmlYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNP 753
Cdd:PRK11788 246 eYLSEVLPKLMECYQAlGDEAE--GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
110-294 |
1.93e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 53.86 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 110 ALYHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKepyTKKALKYFEEGLQ-DGNDTFALLGKAQCL 188
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR---YEEALADYEQALElDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 189 EMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYvCREGDIEKAST 268
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL-EKLGRYEEALE 165
|
170 180
....*....|....*....|....*.
gi 116089292 269 KLENLGNTLDAMEPQNAQLFYNITLA 294
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALALA 191
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
672-802 |
2.61e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 672 RALSILQNVTAEQPYFIEAREKMADIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQAL 749
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRlGRYDEA--LAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 116089292 750 NQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKL 802
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1155-1299 |
2.96e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1155 EHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAY 1234
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089292 1235 EYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 1299
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
771-992 |
3.56e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 53.76 E-value: 3.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 771 NYSMAITYYEAALKTGQKNYLCYDL--AELLLKLKWYDKAEKVLQHALAHEPVN------ELSALMEDGRCQVLLaKVYS 842
Cdd:COG3071 65 DYERRDEYLAQALELAPEAELAVLLtrAELLLDQGQAEQALATLEALRAGAPRHpqvlrlLLQAYRQLGDWEELL-ELLP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 843 KMEKLGdAITAlQQARELQARV---LKRVQMEQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALV 912
Cdd:COG3071 144 ALRKHK-ALSA-EEAQALERRAylgLLRQAARDAEAlkalwkaLPRAERRDPELAAAYARALIALGDHDEAERLLREALK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 913 HCETDnkimlELARLY--LAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN--YMT 988
Cdd:COG3071 222 RQWDP-----RLVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAeaYAE 296
|
....
gi 116089292 989 LSRL 992
Cdd:COG3071 297 LARL 300
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
221-401 |
5.89e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 53.84 E-value: 5.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 221 LQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKASTKLENLGntldAMEPQNAQLFYNITLAFSRTcG 300
Cdd:COG3914 87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLL-ALGRLEEALAALRRAL----ALNPDFAEAYLNLGEALRRL-G 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 301 RsqliLQKIQTLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQ 380
Cdd:COG3914 161 R----LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236
|
170 180
....*....|....*....|.
gi 116089292 381 LEFLNEIQQSIGKSAELIYLH 401
Cdd:COG3914 237 EELLAALARGPSELSPFALLY 257
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
110-245 |
7.59e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 7.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 110 ALYHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKepyTKKALKYFEEGLQ-DGNDTFALLGKAQCL 188
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGD---LDEAIVLLHEALElDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 116089292 189 EMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQN 245
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
109-271 |
8.94e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 51.55 E-value: 8.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 109 KALYHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKepyTKKALKYFEEGLQ-DGNDTFALLGKAQC 187
Cdd:COG0457 43 EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGR---YEEALEDYDKALElDPDDAEALYNLGLA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 188 LEMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVCREGDIEKAS 267
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
....
gi 116089292 268 TKLE 271
Cdd:COG0457 200 LLAL 203
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
642-945 |
9.45e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.22 E-value: 9.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 642 DAIHEFSGTSEEVrVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYitcfrEIAERMAN 721
Cdd:COG3071 74 AQALELAPEAELA-VLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL-----ELLPALRK 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 722 PRsflLLGDAYMNILEPEeaivAYEQALNQNPKDGTLASKMGKALikthnysmaityyEAALKtgQKNYLCYDLAELLLK 801
Cdd:COG3071 148 HK---ALSAEEAQALERR----AYLGLLRQAARDAEALKALWKAL-------------PRAER--RDPELAAAYARALIA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 802 LKWYDKAEKVLQHALAHEPVNELSALMedGRCQvllakvyskmekLGDAITALQQARELQArvlkrvqmEQPDAvPAQKH 881
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVRLY--GRLQ------------GGDPAKQLKRAEKWLK--------KHPND-PDLLL 262
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116089292 882 LAAEICaeiakhsVAQRDYEKAIKFYREALVHcETDNKIMLELARLYLAQDDPDS---CLRQCALLL 945
Cdd:COG3071 263 ALGRLC-------LRNQLWGKAREYLEAALAL-RPSAEAYAELARLLEQLGDPEEaaeHYRKALALA 321
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
209-382 |
1.89e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.78 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 209 PSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKAstkLENLGNTLdAMEPQNAQLF 288
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYL-RLGRYEEA---LADYEQAL-ELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 289 YNITLAFSRTcGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQ 368
Cdd:COG0457 80 NNLGLALQAL-GRYEEALE----DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
170
....*....|....
gi 116089292 369 LIEGQLQDADQQLE 382
Cdd:COG0457 155 EKLGRYEEALELLE 168
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
180-323 |
1.95e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 48.65 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 180 ALLGKAQCLEMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcR 259
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL-K 84
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 116089292 260 EGDIEKASTKLEnlgnTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQ 323
Cdd:COG4783 85 AGDYDEALALLE----KALKLDPEHPEAYLRLARAYRAL-GR----PDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
174-350 |
2.40e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 174 DGNDTFALLGKAQCLEMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQA 253
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 254 LYYVcREGDIEKAstkLENLGNTLdAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQSEFATELGYQ 333
Cdd:COG0457 84 LALQ-ALGRYEEA---LEDYDKAL-ELDPDDAEALYNLGLALLEL-GR----YDEAIEAYERALELDPDDADALYNLGIA 153
|
170
....*....|....*..
gi 116089292 334 MILQGRVKEALKWYKTA 350
Cdd:COG0457 154 LEKLGRYEEALELLEKL 170
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
896-986 |
2.67e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 2.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 896 AQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLrQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHL 975
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
90
....*....|.
gi 116089292 976 QQLLERKPDNY 986
Cdd:COG3063 83 ERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
834-983 |
3.55e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.42 E-value: 3.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 834 QVLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLAAEICAEIAKHsvAQRDYEKAIKFYREALVH 913
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYN--KLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 914 CETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKP 983
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
48-550 |
3.85e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.62 E-value: 3.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 48 LMEGKTQEALREFEAIKnKQDVSLCSLLALIYAHKMSPNPDREAI--LESDARVkeqrkgagEKALYHAGLFL--WHI-- 121
Cdd:TIGR02917 374 LALGDFEKAAEYLAKAT-ELDPENAAARTQLGISKLSQGDPSEAIadLETAAQL--------DPELGRADLLLilSYLrs 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 122 GRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGKEpytKKALKYFEEGLQ-DGNDTFALLGKAQCLEMRQNYSGALET 200
Cdd:TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL---AKAREAFEKALSiEPDFFPAAANLARIDIQEGNPDDAIQR 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 201 VNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKASTKLenlgNTLDAM 280
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAIL----NEAADA 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 281 EPQNAQLFYNItlafsrtcGRSQLI---LQKIQTLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETS 357
Cdd:TIGR02917 597 APDSPEAWLML--------GRAQLAagdLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 358 VSALVGFIQCQLIEGQLQDAD---QQLE-------FLNEIQQSI---------------------GKSAELIYLHAVLAm 406
Cdd:TIGR02917 669 TEAQIGLAQLLLAAKRTESAKkiaKSLQkqhpkaaLGFELEGDLylrqkdypaaiqayrkalkraPSSQNAIKLHRALL- 747
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 407 kKNKRQEEVINLLNDVLDTH------FSQLEGLPL-------GIQYFEKLN---PDFLLeiVMEYLSFCPMQPASPgqpl 470
Cdd:TIGR02917 748 -ASGNTAEAVKTLEAWLKTHpndavlRTALAELYLaqkdydkAIKHYQTVVkkaPDNAV--VLNNLAWLYLELKDP---- 820
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 471 cpllrRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLE 550
Cdd:TIGR02917 821 -----RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
473-678 |
1.03e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 473 LLRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELC 552
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 553 LSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLhmamslpgmkrigastkskdRKTEVDTSHRLSIFLELIDVHRLNGE 632
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAAL--------------------ERALEQDPDYLPALPRLAELYEKLGD 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 116089292 633 QHEATKVLQDAIHEFSGTSEEvrvtIANADLALAQGDIERALSILQ 678
Cdd:COG2956 228 PEEALELLRKALELDPSDDLL----LALADLLERKEGLEAALALLE 269
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
616-755 |
1.04e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 616 RLSIFLELIDVHRLNGEQHEATKVLQDAIHEFSgtsEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMA 695
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116089292 696 DIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 755
Cdd:COG4783 80 LALLKaGDYDEA--LALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
110-396 |
1.14e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 49.60 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 110 ALYHAGLFLWHIGRHDKAREYIDRMIKISDGSKQGHVLKAWLDITRGkepYTKKALKYFEEGL-QDGNDTFALLGKAQCL 188
Cdd:TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG---DPDKAEEDFDKALkLNSEDPDIYYHRAQLH 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 189 EMRQNYSGALETVNQIIVNFPSFLPAFVKKMKLQLALQDWDQTVETAQRLLLQDSQNVEALRmqalYY---VCREGDIEK 265
Cdd:TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYN----YYgelLLDQNKFDE 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 266 ASTKLE---NLGNTLDAMEPQNAQLFYNITLAFsrtcgRSQLILQKIQTLLERAFSLNPQqSEFATELGYQMILQ-GRVK 341
Cdd:TIGR00990 486 AIEKFDtaiELEKETKPMYMNVLPLINKALALF-----QWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQqGDVD 559
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 116089292 342 EALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQQSIGKSAE 396
Cdd:TIGR00990 560 EALKLFERAAELARTEGELVQAISYAEATRTQIQVQEDYPVLASKLQGMLGGLRE 614
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1141-1257 |
1.40e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1141 QALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLL 1220
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA------LLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 116089292 1221 KRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMA 1257
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
884-1050 |
1.42e-05 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 47.37 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 884 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 963
Cdd:NF040959 37 AKMYRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 964 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGF-QYCKGLYLWYT--GEPN 1040
Cdd:NF040959 117 KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKA------LELDPNEiKYHQAIGFMYVqkGDHE 190
|
170
....*....|
gi 116089292 1041 DALRHFNKAR 1050
Cdd:NF040959 191 TAAEHFKKAM 200
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
945-1051 |
2.10e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 945 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPG 1024
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD---NPE 86
|
90 100
....*....|....*....|....*..
gi 116089292 1025 FQYCKGLYLWYTGEPNDALRHFNKARK 1051
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1138-1227 |
2.43e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1138 NVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAE 1217
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA------LYLLGLAAFQQGDYAEAI 105
|
90
....*....|
gi 116089292 1218 DLLKRCLRHN 1227
Cdd:COG4235 106 AAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1200-1306 |
4.76e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1200 WLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKA 1279
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 116089292 1280 KRYVDSIDICHQVLEAHPTYPKIRKDI 1306
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
243-382 |
5.04e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 5.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 243 SQNVEALRMQALYYVcREGDIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQ 322
Cdd:COG4783 1 AACAEALYALAQALL-LAGDYDEA----EALLEKALELDPDNPEAFALLGEILLQL-GD----LDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 323 QSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 382
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
713-861 |
1.04e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 713 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC 792
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 793 Y-DLAELLLKLKWYDKAEKVLQHALAHEPVNELSALmedgrcqvLLAKVYSKMEKLGDAITALQQARELQ 861
Cdd:COG5010 91 YyNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS--------NLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
730-820 |
1.06e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 730 DAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEAALKTGQKNYLC----YDLAELLLKL 802
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdalLKLGLSYLEL 80
|
90
....*....|....*...
gi 116089292 803 KWYDKAEKVLQHALAHEP 820
Cdd:COG1729 81 GDYDKARATLEELIKKYP 98
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
765-866 |
1.81e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 765 ALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELLLKLKWYDKAEKvLQHALAHEPvnelsalmEDGRCQVLLAKVYSK 843
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALnNLGLLLLEQGRYDEAIA-LEKALKLDP--------NNAEALLNLAELLLE 71
|
90 100
....*....|....*....|...
gi 116089292 844 MEKLGDAITALQQARELQARVLK 866
Cdd:COG3063 72 LGDYDEALAYLERALELDPSALR 94
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1195-1303 |
2.08e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.61 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1195 EFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAF 1274
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-DPDDAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 116089292 1275 NYLKAKRYVDSIDICHQVLEAHPTYPKIR 1303
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
474-592 |
2.12e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.87 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 474 LRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCL 553
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 116089292 554 SYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 592
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
506-592 |
2.30e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 506 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 585
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEAYLNLGEALRRLGRLEEAIAA 168
|
....*..
gi 116089292 586 LHMAMSL 592
Cdd:COG3914 169 LRRALEL 175
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
877-1129 |
3.23e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 877 PAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCEtdNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATM 956
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAA--ALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 957 MM----ADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDvprffsmAEKRNSRA-KLEPGF---QYC 1028
Cdd:COG3914 79 ALlelaALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-------ALAALRRAlALNPDFaeaYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1029 KGLYLWYTGEPNDALRHFNKArkdrdwgqnalynmieICLNPDNEtvggEVFENldgdLGNSTEKQESVQLAVRTAEKLL 1108
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRA----------------LELDPDNA----EALNN----LGNALQDLGRLEEAIAAYRRAL 207
|
250 260
....*....|....*....|..
gi 116089292 1109 kELKPQTVQGHVQ-LRIMENYC 1129
Cdd:COG3914 208 -ELDPDNADAHSNlLFALRQAC 228
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
230-377 |
4.69e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 230 QTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKASTKLENLGntldAMEPQNAQLFYNITLAFSRTcGRSQlilqKI 309
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYL-RLGRYDEALAAYEKAL----RLDPDNADALLDLAEALLAA-GDTE----EA 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116089292 310 QTLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSAlvgfiqcQLIEGQLQDA 377
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA-------RLLEASIAEA 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1086-1227 |
5.42e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 5.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1086 DLGNSTEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLrimeNYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMAT 1165
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALE-LDPDNPEAFALL----GEILLQLGD---LDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 116089292 1166 AYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHN 1227
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
636-784 |
5.90e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 636 ATKVLQDAIHEFSGTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREI 715
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 716 AERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 784
Cdd:COG5010 81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
721-790 |
6.70e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 6.70e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 721 NPRSFLLLGDAYMNILEPEEAIvAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY 790
Cdd:COG3063 25 NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
478-570 |
7.25e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.83 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 478 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQ----EKVKLCSQSLELCL 553
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleEAIAAYRRALELDP 211
|
90
....*....|....*..
gi 116089292 554 SYDfKVRDYPLYHLIKA 570
Cdd:COG3914 212 DNA-DAHSNLLFALRQA 227
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1206-1297 |
8.22e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1206 IYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYtDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDS 1285
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKL-DPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 116089292 1286 IDICHQVLEAHP 1297
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
713-869 |
8.34e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 8.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 713 REIAERMA---NPRSFLLLGDAYMNILEPEEAIVAYEQALNQN-PKDGTLASKMGKALIKTHNYSMAITYYEAALKT--- 785
Cdd:COG4700 77 RELEKALEfadTVQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKnpd 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 786 --GQKNYLCYDLAelLLKLKWYDKAEKVLQHALAHEPVNElsalmedGRCQvlLAKVYSKMEKLGDAITALQQ------- 856
Cdd:COG4700 157 fkSSDAHLLYARA--LEALGDLEAAEAELEALARRYSGPE-------ARYR--YAKFLARQGRTAEAKELLEEildeakh 225
|
170
....*....|....*..
gi 116089292 857 ----ARELQARVLKRVQ 869
Cdd:COG4700 226 mpkhYRRLNREWIREAK 242
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
144-407 |
8.52e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 42.98 E-value: 8.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 144 GHVLKAWLDITRGKepyTKKALKYFEEGLQDGND-TFALLGKAQCLEMRQNYSGALETVNQIIVNFPSF-LPAFVKKMKL 221
Cdd:COG3071 18 AALLEGLLALAEGR---YARAEKLLSKAAEHSEApLLAYLLAARAAQALGDYERRDEYLAQALELAPEAeLAVLLTRAEL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 222 QLALQDWDQTVETAQRLLLQDSQNVEALRMQALYYVcREGDIEKASTKLENLGNTLDAMEPQNAQLFYNITLAFSRTCGR 301
Cdd:COG3071 95 LLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYR-QLGDWEELLELLPALRKHKALSAEEAQALERRAYLGLLRQAAR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 302 SQLILQKIQTLLERAFSLNPqqsEFATELGYQMILQGRVKEALKWYKTAmtLDETSVSALVGfiqcQLIEGQLQDADQQL 381
Cdd:COG3071 174 DAEALKALWKALPRAERRDP---ELAAAYARALIALGDHDEAERLLREA--LKRQWDPRLVR----LYGRLQGGDPAKQL 244
|
250 260
....*....|....*....|....*.
gi 116089292 382 EFLNEIQQSIGKSAELIYLHAVLAMK 407
Cdd:COG3071 245 KRAEKWLKKHPNDPDLLLALGRLCLR 270
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
492-592 |
9.90e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 492 LQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQ 571
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGL 80
|
90 100
....*....|....*....|.
gi 116089292 572 SQKKMGEIADAIKTLHMAMSL 592
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKL 101
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
897-984 |
1.02e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 897 QRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSCLRQCALLLQSDQDNE---AATMMMADLMFRKQDYEQ 970
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
90
....*....|....
gi 116089292 971 AVFHLQQLLERKPD 984
Cdd:COG1729 86 ARATLEELIKKYPD 99
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
709-785 |
1.38e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 709 ITCFREIAERMAN----PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEA 781
Cdd:COG1729 13 IAAFKAFLKRYPNsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEE 92
|
....
gi 116089292 782 ALKT 785
Cdd:COG1729 93 LIKK 96
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
505-571 |
1.52e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.33 E-value: 1.52e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 116089292 505 SGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCLSYDFKVRDYPLYHLIKAQ 571
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLD---EAEALLAALPAADPDDPRYAALLAK 64
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
764-859 |
1.55e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 764 KALIKTHNYSMAITYYEAALKTGQKNYL----CYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSAlmedgRCQVLLAK 839
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP-----DALLKLGL 75
|
90 100
....*....|....*....|
gi 116089292 840 VYSKMEKLGDAITALQQARE 859
Cdd:COG1729 76 SYLELGDYDKARATLEELIK 95
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
897-961 |
1.67e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.67e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 116089292 897 QRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 961
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
260-382 |
1.78e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 260 EGDIEKASTKLENLGNTLDAMEPQNAQLFYNITLAFSRtCGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGR 339
Cdd:COG4785 48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS-LGDYDLAIA----DFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 116089292 340 VKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 382
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
927-1019 |
2.10e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 927 LYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVfHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVP 1006
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 116089292 1007 RFFSMAEKRNSRA 1019
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
149-287 |
2.54e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.02 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 149 AWLDITRgkepyTKKALKYFEEGLQD--GNDTFALLGKAQCLEMRQNYSGALETVNQIIVNFPSFlpafvKKMKLQL--- 223
Cdd:COG4700 98 ALLELGR-----YDEAIELYEEALTGifADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDF-----KSSDAHLlya 167
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 116089292 224 ----ALQDWDQTvETAQRLLLQDSQNVEALRMQALYYVcREGDIEKASTKLENLGNTLDAMEPQNAQL 287
Cdd:COG4700 168 raleALGDLEAA-EAELEALARRYSGPEARYRYAKFLA-RQGRTAEAKELLEEILDEAKHMPKHYRRL 233
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
945-1049 |
2.61e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 41.15 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 945 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRAklePG 1024
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AE 77
|
90 100
....*....|....*....|....*
gi 116089292 1025 FQYCKGLYLWYTGEPNDALRHFNKA 1049
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKA 102
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
889-1004 |
3.50e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 40.22 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 889 EIAKHSVAQRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSclrqcAL-LLQSDQDNEAATMM---MADL 961
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLDNAKDPAlkaLARLRLARVLLAQKKYDE-----ALaTLDAVKPEAFAALYaelRGDI 169
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 116089292 962 MFRKQDYEQAVFHLQQLLERKPDNYMtLSRLIDLlrrcgKLED 1004
Cdd:COG2976 170 LLAQGDKAEARAAYQKALAALPEDAP-LRQLLQM-----KLDD 206
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
663-754 |
3.73e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 3.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 663 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyITCFREIAERMANPRSFLLLGDAYMNILEPEEAI 742
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 116089292 743 VAYEQALNQNPK 754
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1135-1229 |
3.92e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1135 QKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARnQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYD 1214
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEA------LLNLAELLLELGDYD 76
|
90
....*....|....*
gi 116089292 1215 MAEDLLKRCLRHNRS 1229
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
506-592 |
4.19e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 506 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLcSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 585
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 116089292 586 LHMAMSL 592
Cdd:COG3063 82 LERALEL 88
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1196-1308 |
4.29e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 40.48 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1196 FEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1275
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRAEALLELAQD 85
|
90 100 110
....*....|....*....|....*....|...
gi 116089292 1276 YLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1308
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
478-592 |
5.73e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 478 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 557
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD- 106
|
90 100 110
....*....|....*....|....*....|....*
gi 116089292 558 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 592
Cdd:COG0457 107 --PDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1175-1297 |
6.89e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 1175 RARNQLKRIAKMNWNAIDAEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNY 1254
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 116089292 1255 EMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1297
Cdd:COG5010 112 EKALAL-SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
312-382 |
7.71e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 7.71e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 116089292 312 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 382
Cdd:COG5010 76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
478-592 |
7.95e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 7.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 116089292 478 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 557
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD- 81
|
90 100 110
....*....|....*....|....*....|....*
gi 116089292 558 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 592
Cdd:COG4235 82 --PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| |
