|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1289-1416 |
8.62e-44 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 156.01 E-value: 8.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1289 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELRLQELKLNRELVKD 1368
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 109255234 1369 KEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLER 1416
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
524-1275 |
1.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 524 KHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERgkRSATSGLTTEDLNLTENISQGDRISERKLD----LLSL 599
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEEL--EELTAELQELEEKLEELRLEVSELEEEIEElqkeLYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 600 KN-MSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDpdvkggetsliIPS 678
Cdd:TIGR02168 294 ANeISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-----------LEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 679 LERLVNAIESKNAEgifdaslhLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNV 758
Cdd:TIGR02168 363 LEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 759 VFK---GIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKt 835
Cdd:TIGR02168 435 LKElqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK- 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 836 esktiKEEKRKLEDQVQQDAIKV-KEYNNLLNALqmdsdemkkiLAENSRKITVLQVNEKSLIRQYTTLVELER------ 908
Cdd:TIGR02168 514 -----NQSGLSGILGVLSELISVdEGYEAAIEAA----------LGGRLQAVVVENLNAAKKAIAFLKQNELGRvtflpl 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 909 QLRKENEKQKNELLSMEAEVCEKIGCLQRFKEMAIFKIAaLQKVVDNSVSLSELELANKQYNELTAKYRDI--------- 979
Cdd:TIGR02168 579 DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA-LSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlvrp 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 980 --------LQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQETKLGNEssmdkakksitnsd 1051
Cdd:TIGR02168 658 ggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-------------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1052 ivsISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKiNLDAQKVEQMLRDELADSVSKAVS 1131
Cdd:TIGR02168 724 ---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1132 dADRQRILELEKNEMELKVEVSKLRE-----ISDIARRQVEILNAQQQSRDK--EVESLRMQLLDYQAQSDEKSLIAKLH 1204
Cdd:TIGR02168 800 -ALREALDELRAELTLLNEEAANLRErleslERRIAATERRLEDLEEQIEELseDIESLAAEIEELEELIEELESELEAL 878
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 109255234 1205 QHNV-SLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQAL--YYARLEGrnrakhLRQTIQSLRRQFS 1275
Cdd:TIGR02168 879 LNERaSLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqLELRLEG------LEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-868 |
3.92e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 3.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 93 KLENELEMAQQSAGGRDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 173 NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 253 MTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTD-LLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQML 331
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 332 HNLREKLKNA--QLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKntcIIEDLKNELQRNKGASTLSQQthMKI 409
Cdd:TIGR02168 457 ERLEEALEELreELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG---VKALLKNQSGLSGILGVLSEL--ISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 410 QSTLDILKEKTKEAERTAELAEADarEKDKELVEALKRLKDYESGVYGLEDA-----VVEIKNCKNQIKIRDREIEILTK 484
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 485 EINKLELKISDFL-------DENEALRERVGLEPKTMI---DLTEFRNSKHLKQQQYRAENQILL--KEIESLEEERLDL 552
Cdd:TIGR02168 610 FDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtlDGDLVRPGGVITGGSAKTNSSILErrREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 553 KKKIR--QMAQERGKRSATSGLTTEDLNLTENISQGDRISERKLDLLSLKNMSE-AQSKNEFLSRELIEKERDLERSRTV 629
Cdd:TIGR02168 690 EEKIAelEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 630 IAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESknaegifdaslhLKAQVDQLT 709
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES------------LERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 710 GRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKE-TSLLRQSEGSNVvfkgidlpdgiapsSASIINSQNEYLIHLL 788
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLEE--------------ALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 789 QELENK----EKKLKNLEDSLEDYNRKFAVIRhQQSLLYKEYLSEKetWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNL 864
Cdd:TIGR02168 904 RELESKrselRRELEELREKLAQLELRLEGLE-VRIDNLQERLSEE--YSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
....
gi 109255234 865 LNAL 868
Cdd:TIGR02168 981 IKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1219-1944 |
7.83e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 7.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1219 GKLESITSKLQKMEAYnLRLEQKLDEKEQALYYARLEGRNraKHLRQTIQSLRRQfsgalplaqQEKFSKTMIQLQNDKL 1298
Cdd:TIGR02168 200 RQLKSLERQAEKAERY-KELKAELRELELALLVLRLEELR--EELEELQEELKEA---------EEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1299 KIMQEMKnsqqEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV--INWHMKIEELRLQELKLNRELVKDKEEIKYLN 1376
Cdd:TIGR02168 268 KLEELRL----EVSELEEEIEELQKELYALANEISRLEQQKQILRErlANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1377 NIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPD------------ 1444
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrrerlqqei 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1445 ---PSLPLPNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREkliae 1521
Cdd:TIGR02168 424 eelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ----- 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1522 lGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQRE-IVKKHEEDLhilhhRLELQADSSLNKFK 1600
Cdd:TIGR02168 499 -ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQaVVVENLNAA-----KKAIAFLKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1601 QTAWDLMKQSPTPVPTNKHFIR---------LAEMEQTVAEQDDSLSSLLVKL--------------------------- 1644
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILkniegflgvAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1645 --------------KKVSQDLERQREITELKvkefENIKLQLQENHE--DEVKKVKAEVEDLKYLLDQSQKESQCLKSEL 1708
Cdd:TIGR02168 653 dlvrpggvitggsaKTNSSILERRREIEELE----EKIEELEEKIAEleKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1709 QAQKEansraptttmrnLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvqqivdrhtrelK 1788
Cdd:TIGR02168 729 SALRK------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA---------------E 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1789 TQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG-KPLT 1867
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlAAEI 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1868 DNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKK--------WQAKIEGIRNKLKEKEGEVFTL 1939
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSelrreleeLREKLAQLELRLEGLEVRIDNL 941
|
....*
gi 109255234 1940 TKQLN 1944
Cdd:TIGR02168 942 QERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1640-1933 |
2.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1640 LLVKLKKVSQDLERQREITELKVKEFENIKLQLQEnHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQaqKEANSRAP 1719
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELA--RLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1720 TTTMRN----LVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRhTRELKTQVEDLN 1795
Cdd:COG1196 307 LEERRReleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1796 ENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQgkpltdNKQSLIE 1875
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA------ELEEEEE 459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 109255234 1876 ELQRKVKKLENQLEGKVEEV-DLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1933
Cdd:COG1196 460 ALLELLAELLEEAALLEAALaELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| DUF1633 |
pfam07794 |
Protein of unknown function (DUF1633); This family contains sequences derived from a group of ... |
1765-1941 |
2.43e-07 |
|
Protein of unknown function (DUF1633); This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana. These sequences are highly similar and the region concerned is about 100 residues long.
Pssm-ID: 116408 [Multi-domain] Cd Length: 698 Bit Score: 56.43 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1765 SATSQKEAHLNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQ----KKQKAYNKILRek 1840
Cdd:pfam07794 458 RAIREEDPHLGADQ-----DREVRFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGgleaDKQMARNQIHR-- 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1841 eeIDQENDELKRQIKRLTSGLQG--KPLTDNK-------QSLIEELQRK--VKKLENQLEGKVEEVDLK-PMKEKNAKEE 1908
Cdd:pfam07794 531 --LEEKKDELSKKVLDLTSIAQGakKAVHDAKvelaaayLKLLAGIKDKwvAKKEFTVLEGQAAEVESNlALIDQITKAA 608
|
170 180 190
....*....|....*....|....*....|...
gi 109255234 1909 LIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTK 1941
Cdd:pfam07794 609 IDLTLEKPRFQAEIDDLEARCKLKEVSDFTLSK 641
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
789-1371 |
3.70e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 789 QELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLED--QVQQDAIKVKEYNNLLN 866
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEakKKAEEAKKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 867 ALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELER--QLRKENEKQKNELLSMEAEVCEKIGCLQRFKEMAIF 944
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 945 KIAALQKVvdnsvslselELANKQYNELTAKYRDILQKDnmlvqrtsnlehleceniSLKEQVESINKELEItKEKLHTI 1024
Cdd:PTZ00121 1406 KADELKKA----------AAAKKKADEAKKKAEEKKKAD------------------EAKKKAEEAKKADEA-KKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1025 EQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSlkqmEERNFELETKFAEL 1104
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA----EEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1105 TKINLDAQKVEQMLRdelADSVSKAVsdadrqrilELEKNEMELKVE-VSKLREISDIARRQVEILNAQQQSRDKEVESL 1183
Cdd:PTZ00121 1533 AKKADEAKKAEEKKK---ADELKKAE---------ELKKAEEKKKAEeAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1184 RMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHL 1263
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1264 RQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNM--ENKTLEMELKLKGLEELISTLKDTKGA 1341
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
570 580 590
....*....|....*....|....*....|
gi 109255234 1342 QKVINWHMKIEELRLQELKLNRELVKDKEE 1371
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-661 |
9.93e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 9.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 21 QEELADNLLISLSKVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFEnQLKTKVMKLENELEM 100
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 101 AQQsaggrDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDI 180
Cdd:COG1196 300 LEQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 181 IDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRM 260
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 261 KAIVHQTDNVIDQLKKENDHYQLQVQELTDLL---KSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEyqQMLHNLREK 337
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 338 LKNAQLDADKSNVMALQQGIQERDSQIKMLteqveqytkemekntciIEDLKnelQRNKGASTLSQQTHMKIQSTLDILK 417
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA-----------------IEYLK---AAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 418 EKTKEAERTAELAEadarekdkELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKISDFL 497
Cdd:COG1196 593 ARGAIGAAVDLVAS--------DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 498 DENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQErgkrsatsgLTTEDL 577
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ---------LEAERE 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 578 NLTENISQGDRISERKLDLLSLKNMSEAQsknefLSRELIEKERDLERSRTV----IAKF---QNKLKELVEENKQLEEG 650
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEE-----LERELERLEREIEALGPVnllaIEEYeelEERYDFLSEQREDLEEA 810
|
650
....*....|.
gi 109255234 651 MKEILQAIKEM 661
Cdd:COG1196 811 RETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
963-1272 |
2.71e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 963 ELANKQYNELTAKYRDILQKdnmLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQEtklgnessmdK 1042
Cdd:COG1196 221 ELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1043 AKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDEL 1122
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1123 ADSVSKAVS-----DADRQRILELEKNEMELKVEVSKL-REISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDE 1196
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109255234 1197 KSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1272
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1662-2451 |
4.41e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1662 VKEFENIKLQLQENHEDEVKKVKAE--VEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEK 1739
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAkkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1740 QQKALSRALLELRAEMTAAAEERIISATSQKEAHLNvqqivdRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNL 1819
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1820 NDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKV--KKLENQLEGKVEEVDl 1897
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAaaKKKADEAKKKAEEKK- 1431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1898 KPMKEKNAKEELIRWEEGKK---WQAKIEGIRNKLKEKEgevftltkqlntlkdlfaKADKEKLTLQRKLKTTGMTVDQV 1974
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAK------------------KADEAKKKAEEAKKADEAKKKAE 1493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1975 LGIRALESEKELEELKKRNLDLENDILYMRAHQALPRDsvvedlhlQNRYLQEKLHALEKQFSKDTYSKPSISGIESDDH 2054
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE--------EAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2055 CQrEQELQKENLKLSSENIELKFQLEQAnkdlprlknQVRDLKEMCEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTI 2134
Cdd:PTZ00121 1566 AE-EAKKAEEDKNMALRKAEEAKKAEEA---------RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2135 GLMKKVVEKVQRENEQLKKAsgiltsEKMANIEQENEKLKAELEKLKAhlgHQLSMHYESKTKGTEKIIAEN------ER 2208
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKA------EEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEALKKEAeeakkaEE 1706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2209 LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQfaESRGPQLEGADSKSWKSIVVTRMYETKlKELETDIAK 2288
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE--EAKKDEEEKKKIAHLKKEEEKKAEEIR-KEKEAVIEE 1783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2289 KNQSITDLKQLVKEATEREQKVNKYNeDLEQQIKILKHVPEGAETEQGLKRElqVLRLANHQLDKEKAELIHQIEANKDQ 2368
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIKDIFDNFAN-IIEGGKEGNLVINDSKEMEDSAIKE--VADSKNMQLEEADAFEKHKFNKNNEN 1860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2369 SGAESTIPDADQLKEKIKDLETQLKMSDLEKQhLKEEIKKLKKELENFDPSFFEEIEDlKYNYKEEVKKNI-LLEEKVKK 2447
Cdd:PTZ00121 1861 GEDGNKEADFNKEKDLKEDDEEEIEEADEIEK-IDKDDIEREIPNNNMAGKNNDIIDD-KLDKDEYIKRDAeETREEIIK 1938
|
....
gi 109255234 2448 LSEQ 2451
Cdd:PTZ00121 1939 ISKK 1942
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-739 |
8.86e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 8.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 87 LKTKVMKLENELEMAQQSAGGRDTRFLRNEICQLEKQLEQKDREL----EDMEKELEKEKKVNEQLALRNEEAENENSKL 162
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 163 RRENKRLKKKNEQLCQDIIDYQKQIDSQKETLlsrrgedsdyRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKN 242
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDPIMvavnakveewklilsskdd 322
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM------------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 323 eiiEYQqmlhnlreklknaqldadksnvMALQQGIQERDSQIKMLTEQVEQyTKEMEKNtcIIEDLknelqrnkgasTLS 402
Cdd:pfam15921 447 ---ERQ----------------------MAAIQGKNESLEKVSSLTAQLES-TKEMLRK--VVEEL-----------TAK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 403 QQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEIL 482
Cdd:pfam15921 488 KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEIL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 483 TKEI-NKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQyRAENQILLKEIESLEEERLDLK-------K 554
Cdd:pfam15921 568 RQQIeNMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK-DAKIRELEARVSDLELEKVKLVnagserlR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 555 KIRQMAQERGKRSATSGLTTEDLNlteNISQGDRISERkldllSLKNMSEA-QSKNEFLSRELIEKERDLERSRTVIakf 633
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNELN---SLSEDYEVLKR-----NFRNKSEEmETTTNKLKMQLKSAQSELEQTRNTL--- 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 634 qnklkelveenKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLK---------AQ 704
Cdd:pfam15921 716 -----------KSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKlsqelstvaTE 784
|
650 660 670
....*....|....*....|....*....|....*
gi 109255234 705 VDQLTGRNEELRQELRESRKEAINYSQQLAKANLK 739
Cdd:pfam15921 785 KNKMAGELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1012-1805 |
3.34e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1012 KELEITKEKLHTIEQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITmlEMKELNERQRAEHCQKMYEHLRTSlkqme 1091
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAE--DARKAEEARKAEDARKAEEARKAE----- 1149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1092 ernfelETKFAELTKINLDAQKVEQMLRDELADSVSKAVSDADRQRILELEKNEMELKVEVSKLREIsdiARRQVEILNA 1171
Cdd:PTZ00121 1150 ------DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE---ERKAEEARKA 1220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1172 QQQSRDKEVESLrmqllDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYY 1251
Cdd:PTZ00121 1221 EDAKKAEAVKKA-----EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1252 ARLEGRNRAKHLRQTIQSLRRqfsgalplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEEL 1331
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKK--------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1332 ISTLKDTKGAQKVINWHMKIEELRLQElklnrELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQMAWDQRE 1411
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKAD-----EAKKKAEEDK----------KKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1412 VDLERQLDIFDRQQNEilnAAQKFEEAtgsipdpslplpnqleialrKIKENIRIILETRATCKSLEEKLKEKESALRLA 1491
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADE---AKKKAEEA--------------------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1492 EQNILSRDKViNELRlrlpaTAEREKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQ---KEEVLKKYQRLLEKARE 1568
Cdd:PTZ00121 1490 KKAEEAKKKA-DEAK-----KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKADELKKAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1569 EQREIVKKHEEDLHILHHRLELQADSSlnkfKQTAWDLMKQSPTPVPTNKHFIRLAEMEQTVAEQddslssllvklkkVS 1648
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAE----EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-------------LK 1626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1649 QDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKEsQCLKSELQAQKEANSRAPTTTMRNLVE 1728
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE-EAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 109255234 1729 RLKSQLALKEKQQKALSRALLELRAEMTAAAEERiiSATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEAL 1805
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA--EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1780-2407 |
1.31e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1780 VDRHTRELKTQVEDLNEnllKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTS 1859
Cdd:pfam15921 76 IERVLEEYSHQVKDLQR---RLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1860 GLQG-----KPLTDNKQSLIEELQRKVKKLENQLEG------KVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNK 1928
Cdd:pfam15921 153 ELEAakclkEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1929 LKEKEGEVFTLTKQLNTLKD---------LFAKADK-EKLTLQRKLKTTGMTvDQVLGIRALESEKELEELKKRNLDLEN 1998
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSesqnkiellLQQHQDRiEQLISEHEVEITGLT-EKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1999 DILYMRAHQALPR--DSVVEDLHLQNRYLQEKLHALEKQF------------SKDTYSKPS------ISGIESDDHcQRE 2058
Cdd:pfam15921 312 NSMYMRQLSDLEStvSQLRSELREAKRMYEDKIEELEKQLvlanselteartERDQFSQESgnlddqLQKLLADLH-KRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2059 QEL---QKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKE-KAEVQRKLGHVRGSGRSGKTIP----EL 2130
Cdd:pfam15921 391 KELsleKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVSsltaQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2131 EKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQEN--EKLKAELEKLKAHLGHQLS--MHYESKTKGTEKIIAEN 2206
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQelQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2207 ERLRKELKKETDAAEKLRIAKNNL------------EILNEKMTVQLEETGKRLQFAESRGPQlegaDSKSWKsivvTRM 2274
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILK----DKKDAK----IRE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2275 YETKLKELETDIAK-------KNQSITDLKQ----LVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQGlKRELQv 2343
Cdd:pfam15921 623 LEARVSDLELEKVKlvnagseRLRAVKDIKQerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQ- 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109255234 2344 LRLANHQLDKEKAELIHQI----EANKDQSGAESTIP----DADQLKEKIKDLETQLKMSDLEKQHLKEEIK 2407
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-428 |
1.31e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 34 KVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfl 113
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE------------- 1631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 114 RNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKqidsqKET 193
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-----AEE 1706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 194 LLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKievQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQ 273
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK---KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 274 -LKKENDHYQLQVQELTDLLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMlhnLREKLKNAQLDADKSNVMA 352
Cdd:PTZ00121 1784 eLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---QLEEADAFEKHKFNKNNEN 1860
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109255234 353 LQQGIQERDSQIKmlTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAE 428
Cdd:PTZ00121 1861 GEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETRE 1934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1630-2392 |
2.71e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1630 VAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFEniKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKEsqclksELQ 1709
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEGYELLKEKE------ALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1710 AQKEAnSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKT 1789
Cdd:TIGR02169 237 RQKEA-IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1790 QVEDLNENLLKLKEALKTSKNRENSLTDNLND-------LNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQ 1862
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1863 G-----KPLTDNKQSLIEELQRKVKKLENqLEGKVEEVDLKPMKEKNAKEELIrwEEGKKWQAKIEGIRNKLKEKEGEVF 1937
Cdd:TIGR02169 396 KlkreiNELKRELDRLQEELQRLSEELAD-LNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1938 TLTKQLNTLKDLFAKADKEkltLQRKLKTTGMTVDQVLGIRALESEKELEEL--------------------------KK 1991
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE---LAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvgeryataievaagnRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1992 RNLDLEND------ILYMRAHQA-----LPRDSVvEDLHLQNRYLQEK--------LHALEKQFSKDTYSKPSISGIESD 2052
Cdd:TIGR02169 550 NNVVVEDDavakeaIELLKRRKAgratfLPLNKM-RDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYVFGDTLVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2053 DHCQREQELQKENLKLSSENIE---------------LKFQLEQANKdLPRLKNQVRDLKEMCEFLKKEKAEVQRKLGHV 2117
Cdd:TIGR02169 629 IEAARRLMGKYRMVTLEGELFEksgamtggsraprggILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2118 RGS-GRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANI-------------EQENEKLKAELEKLKAH 2183
Cdd:TIGR02169 708 SQElSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkelearieelEEDLHKLEEALNDLEAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2184 LGHQLSMHYESKTKGTEKIIAENER----LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLE 2259
Cdd:TIGR02169 788 LSHSRIPEIQAELSKLEEEVSRIEArlreIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2260 gadskswksivvtrmyeTKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEgaeteqGLKR 2339
Cdd:TIGR02169 868 -----------------EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS------ELKA 924
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 109255234 2340 ELQVLRLANHQLDKEKAELIHQIEAnkdqsgaestIPDADQLKEKIKDLETQL 2392
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEE----------ELSLEDVQAELQRVEEEI 967
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
415-1255 |
6.11e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 415 ILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESgvygLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKIS 494
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL----KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 495 DFLDENEALRERVGL----EPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATS 570
Cdd:pfam02463 240 DLLQELLRDEQEEIEsskqEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 571 GLTTEDLNLTENISQGDRISERKLDLLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEG 650
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 651 MKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYS 730
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 731 QQLAKANLKIDHLEKETSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHLLQELEnkekKLKNLEDSLEDYNR 810
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENY----KVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 811 KFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQ 890
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 891 VNEKSLIRQYTTLVELERQLRKENEKQK-NELLSMEAEVCEKIGCLQRFKEMAIFKIAALQKVVDNSVSLSELELANKQY 969
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEvKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 970 NELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQETKLGNESSMDKAKKSITN 1049
Cdd:pfam02463 716 KLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1050 SDIVSISKKITMLEMKELNERQRA-----EHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELAD 1124
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAELLEEeqlliEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1125 SVSKAVSDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDEKSLIAKLH 1204
Cdd:pfam02463 876 EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 109255234 1205 QHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLE 1255
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1784-2409 |
5.65e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1784 TRELKTQVEDLN------ENLLKLKEALKTSKNRENSLtdNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRL 1857
Cdd:COG1196 195 LGELERQLEPLErqaekaERYRELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1858 TSGLQgkpltdNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWE-EGKKWQAKIEGIRNKLKEKEGEV 1936
Cdd:COG1196 273 RLELE------ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEeELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1937 FTLTKQLNTLKDLFAKADKEKLTLQRKLkttgmtvdqvlgiraLESEKELEELKKRNLDLENDILYMRAHQALPRDSVVE 2016
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAEL---------------AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2017 DLHLQNRYLQEKLHALEKQFSKDtyskpsisgIESDDHCQREQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVRDL 2096
Cdd:COG1196 412 LLERLERLEEELEELEEALAELE---------EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2097 KEMCEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQENEKLKAE 2176
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2177 LEKLKAHLGHQlsmhyesktkgtekiiAENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQfAESRGP 2256
Cdd:COG1196 563 IEYLKAAKAGR----------------ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG-DTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2257 QLEGADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKyNEDLEQQIKILKHVPEGAETEQG 2336
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL-EELAERLAEEELELEEALLAEEE 704
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109255234 2337 LKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTIPDADQLKEKIKDLETQLKMSDLEKQhlkeeIKKL 2409
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE-----LERL 772
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CEP209_CC5 |
pfam16574 |
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry ... |
1289-1416 |
8.62e-44 |
|
Coiled-coil region of centrosome protein CE290; CEP290 and similar centrosomal proteins carry a number of coiled-coil regions, and this is the fifth along the length of the protein. It is thought that the proteins are involved in cilia biosynthesis.
Pssm-ID: 465184 [Multi-domain] Cd Length: 128 Bit Score: 156.01 E-value: 8.62e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1289 TMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELRLQELKLNRELVKD 1368
Cdd:pfam16574 1 TMIQLQEDKAKLQEELKHAEEERRRAEDRAQELELKLKGLEELISTLKDGKGAQKVTEWHKKMEEIRLQELKLQRELSKQ 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 109255234 1369 KEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLER 1416
Cdd:pfam16574 81 KEEIKYLENLIREQERTISSLEEEIVQQTKLHEERQLAWDQREVELER 128
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
524-1275 |
1.96e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.62 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 524 KHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERgkRSATSGLTTEDLNLTENISQGDRISERKLD----LLSL 599
Cdd:TIGR02168 216 KELKAELRELELALLVLRLEELREELEELQEELKEAEEEL--EELTAELQELEEKLEELRLEVSELEEEIEElqkeLYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 600 KN-MSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDpdvkggetsliIPS 678
Cdd:TIGR02168 294 ANeISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-----------LEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 679 LERLVNAIESKNAEgifdaslhLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNV 758
Cdd:TIGR02168 363 LEAELEELESRLEE--------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 759 VFK---GIDLPDGIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKt 835
Cdd:TIGR02168 435 LKElqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK- 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 836 esktiKEEKRKLEDQVQQDAIKV-KEYNNLLNALqmdsdemkkiLAENSRKITVLQVNEKSLIRQYTTLVELER------ 908
Cdd:TIGR02168 514 -----NQSGLSGILGVLSELISVdEGYEAAIEAA----------LGGRLQAVVVENLNAAKKAIAFLKQNELGRvtflpl 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 909 QLRKENEKQKNELLSMEAEVCEKIGCLQRFKEMAIFKIAaLQKVVDNSVSLSELELANKQYNELTAKYRDI--------- 979
Cdd:TIGR02168 579 DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA-LSYLLGGVLVVDDLDNALELAKKLRPGYRIVtldgdlvrp 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 980 --------LQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQETKLGNEssmdkakksitnsd 1051
Cdd:TIGR02168 658 ggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE-------------- 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1052 ivsISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKiNLDAQKVEQMLRDELADSVSKAVS 1131
Cdd:TIGR02168 724 ---LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE-ELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1132 dADRQRILELEKNEMELKVEVSKLRE-----ISDIARRQVEILNAQQQSRDK--EVESLRMQLLDYQAQSDEKSLIAKLH 1204
Cdd:TIGR02168 800 -ALREALDELRAELTLLNEEAANLRErleslERRIAATERRLEDLEEQIEELseDIESLAAEIEELEELIEELESELEAL 878
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 109255234 1205 QHNV-SLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQAL--YYARLEGrnrakhLRQTIQSLRRQFS 1275
Cdd:TIGR02168 879 LNERaSLEEALALLRSELEELSEELRELESKRSELRRELEELREKLaqLELRLEG------LEVRIDNLQERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
93-868 |
3.92e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 3.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 93 KLENELEMAQQSAGGRDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKK 172
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 173 NEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEK 252
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 253 MTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTD-LLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQML 331
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDrRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 332 HNLREKLKNA--QLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKntcIIEDLKNELQRNKGASTLSQQthMKI 409
Cdd:TIGR02168 457 ERLEEALEELreELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG---VKALLKNQSGLSGILGVLSEL--ISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 410 QSTLDILKEKTKEAERTAELAEADarEKDKELVEALKRLKDYESGVYGLEDA-----VVEIKNCKNQIKIRDREIEILTK 484
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLQAVVVENL--NAAKKAIAFLKQNELGRVTFLPLDSIkgteiQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 485 EINKLELKISDFL-------DENEALRERVGLEPKTMI---DLTEFRNSKHLKQQQYRAENQILL--KEIESLEEERLDL 552
Cdd:TIGR02168 610 FDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIvtlDGDLVRPGGVITGGSAKTNSSILErrREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 553 KKKIR--QMAQERGKRSATSGLTTEDLNLTENISQGDRISERKLDLLSLKNMSE-AQSKNEFLSRELIEKERDLERSRTV 629
Cdd:TIGR02168 690 EEKIAelEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEqLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 630 IAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESknaegifdaslhLKAQVDQLT 709
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES------------LERRIAATE 837
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 710 GRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKE-TSLLRQSEGSNVvfkgidlpdgiapsSASIINSQNEYLIHLL 788
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESElEALLNERASLEE--------------ALALLRSELEELSEEL 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 789 QELENK----EKKLKNLEDSLEDYNRKFAVIRhQQSLLYKEYLSEKetWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNL 864
Cdd:TIGR02168 904 RELESKrselRRELEELREKLAQLELRLEGLE-VRIDNLQERLSEE--YSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
....
gi 109255234 865 LNAL 868
Cdd:TIGR02168 981 IKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1219-1944 |
7.83e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 7.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1219 GKLESITSKLQKMEAYnLRLEQKLDEKEQALYYARLEGRNraKHLRQTIQSLRRQfsgalplaqQEKFSKTMIQLQNDKL 1298
Cdd:TIGR02168 200 RQLKSLERQAEKAERY-KELKAELRELELALLVLRLEELR--EELEELQEELKEA---------EEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1299 KIMQEMKnsqqEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV--INWHMKIEELRLQELKLNRELVKDKEEIKYLN 1376
Cdd:TIGR02168 268 KLEELRL----EVSELEEEIEELQKELYALANEISRLEQQKQILRErlANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1377 NIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPD------------ 1444
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERledrrerlqqei 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1445 ---PSLPLPNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREkliae 1521
Cdd:TIGR02168 424 eelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ----- 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1522 lGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQRE-IVKKHEEDLhilhhRLELQADSSLNKFK 1600
Cdd:TIGR02168 499 -ENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQaVVVENLNAA-----KKAIAFLKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1601 QTAWDLMKQSPTPVPTNKHFIR---------LAEMEQTVAEQDDSLSSLLVKL--------------------------- 1644
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILkniegflgvAKDLVKFDPKLRKALSYLLGGVlvvddldnalelakklrpgyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1645 --------------KKVSQDLERQREITELKvkefENIKLQLQENHE--DEVKKVKAEVEDLKYLLDQSQKESQCLKSEL 1708
Cdd:TIGR02168 653 dlvrpggvitggsaKTNSSILERRREIEELE----EKIEELEEKIAEleKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1709 QAQKEansraptttmrnLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAhlnvqqivdrhtrelK 1788
Cdd:TIGR02168 729 SALRK------------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA---------------E 781
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1789 TQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG-KPLT 1867
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESlAAEI 861
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1868 DNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKK--------WQAKIEGIRNKLKEKEGEVFTL 1939
Cdd:TIGR02168 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSelrreleeLREKLAQLELRLEGLEVRIDNL 941
|
....*
gi 109255234 1940 TKQLN 1944
Cdd:TIGR02168 942 QERLS 946
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1462-2428 |
1.79e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1462 ENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPaTAEREKLIAELGRKEMEPKSHHTLKIAHQT 1541
Cdd:TIGR02168 155 EERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLK-SLERQAEKAERYKELKAELRELELALLVLR 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1542 IANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEdlhilhHRLELQADSSLNKFKQTAWDLMKQsptpvptnkhfi 1621
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEE------LRLEVSELEEEIEELQKELYALAN------------ 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1622 RLAEMEQTVAEQDDSLSSLLVKLKKVS---QDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEvedlkylldqsQ 1698
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEaqlEELESKLDELAEELAELEEKLEELKEELESLEAELEEL-----------E 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1699 KESQCLKSELQAQKEAnsraptttmrnlVERLKSQLALKEKQQKALSRALLELRAEMTAAaEERIISATSQKEAHLNVQQ 1778
Cdd:TIGR02168 365 AELEELESRLEELEEQ------------LETLRSKVAQLELQIASLNNEIERLEARLERL-EDRRERLQQEIEELLKKLE 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1779 IVDRHtrELKTQVEDLNENLLKLKEALktsknrensltdnlNDLNNELQKKQKAYNKIlreKEEIDQENDELKRQIKRLT 1858
Cdd:TIGR02168 432 EAELK--ELQAELEELEEELEELQEEL--------------ERLEEALEELREELEEA---EQALDAAERELAQLQARLD 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1859 SglqgkplTDNKQSLIEELQRKVKKLENQLEGKVEEVDLKpmkeknakEELIRWEEGkkWQAKIE----GIRNKLkekeg 1934
Cdd:TIGR02168 493 S-------LERLQENLEGFSEGVKALLKNQSGLSGILGVL--------SELISVDEG--YEAAIEaalgGRLQAV----- 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1935 evftLTKQLNTLKDLFAkADKEKltlqRKLKTTGMTVDQVLGIRALESEKELEELKKRNLDLENDILYM--RAHQA---- 2008
Cdd:TIGR02168 551 ----VVENLNAAKKAIA-FLKQN----ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpKLRKAlsyl 621
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2009 LPRDSVVEDLHLQNRyLQEKLHALEKQFSKDTY---SKPSISGiESDDHCQREQELQKENLKLSSENIELKFQLEQANKD 2085
Cdd:TIGR02168 622 LGGVLVVDDLDNALE-LAKKLRPGYRIVTLDGDlvrPGGVITG-GSAKTNSSILERRREIEELEEKIEELEEKIAELEKA 699
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2086 LPRLKNQVRDLKEMCEFLKKEKAEVQRKlghvrgsgrsgktipelektIGLMKKVVEKVQRENEQLKKASGILTSEkMAN 2165
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQ--------------------ISALRKDLARLEAEVEQLEERIAQLSKE-LTE 758
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2166 IEQENEKLKAELEKLKAHLgHQLSMHYESKTKGTEKIIAENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETG 2245
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2246 KRLQFAESRGPQLEGADSKSWKSIvvtrmyetklKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKilk 2325
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEI----------EELEELIEELESELEALLNERASLEEALALLRSELEELSEELR--- 904
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2326 hvpEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQ--SGAESTIPDADQLKEKIKDLETQLKmsdlekqhlk 2403
Cdd:TIGR02168 905 ---ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlsEEYSLTLEEAEALENKIEDDEEEAR---------- 971
|
970 980
....*....|....*....|....*
gi 109255234 2404 EEIKKLKKELENFDPSFFEEIEDLK 2428
Cdd:TIGR02168 972 RRLKRLENKIKELGPVNLAAIEEYE 996
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
162-981 |
2.66e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 2.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 162 LRRENKRLKKKNEQlCQDIIDYQKQIDSQKETLL-----SRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQN 236
Cdd:TIGR02168 198 LERQLKSLERQAEK-AERYKELKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 237 QEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELtdllKSKNEEDDPIMVAVNAKVEEWKLI 316
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL----ESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 317 LSSKDDEIIEYQQMLHNLREKLK--NAQLDADKSNVMALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQR 394
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEelEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 395 NKGASTlsQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLED----------AVVE 464
Cdd:TIGR02168 433 AELKEL--QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERlqenlegfseGVKA 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 465 IKNCKNQIK-IRDREIEILTKEiNKLELKISDFLDEN----------------EALRE----RVGLEPKTMIDLTEFRNS 523
Cdd:TIGR02168 511 LLKNQSGLSgILGVLSELISVD-EGYEAAIEAALGGRlqavvvenlnaakkaiAFLKQnelgRVTFLPLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 524 KHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISERKLdllSLKNMS 603
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGV---ITGGSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 604 EAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDpdvkggetsliiPSLERLV 683
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ------------ISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 684 NAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQsegsnvvfkgi 763
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE----------- 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 764 dlpdgIAPSSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKET----------W 833
Cdd:TIGR02168 804 -----ALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELieeleseleaL 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 834 KTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRKE 913
Cdd:TIGR02168 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA 958
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 914 NEkqkNELLSMEAEVCEKIGCLQRfkemaifKIAALQKVvdNSVSLSELELANKQYNELTAKYRDILQ 981
Cdd:TIGR02168 959 LE---NKIEDDEEEARRRLKRLEN-------KIKELGPV--NLAAIEEYEELKERYDFLTAQKEDLTE 1014
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
27-743 |
5.45e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 5.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 27 NLLISLSKVEVNELKSEKQEN------VIHLFRITQSLMKMK----AQEVELALEEVEKAGEEQAKFeNQLKTKVMKLEN 96
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELqeelkeAEEELEELTAELQELeeklEELRLEVSELEEEIEELQKEL-YALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 97 ELEMAQQSAggrdtRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL 176
Cdd:TIGR02168 303 QKQILRERL-----ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 177 CQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEanEKIEVQNQEMRKNLEESVQEMEKMTDE 256
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK--KLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 257 YNRMKAIVHQTDNVIDQLKKENDHYQLQVQELT---DLLKSKNEEDDPIMVAVNAkVEEWKLILSSKDDEIIEyqqmLHN 333
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGVKA-LLKNQSGLSGILGVLSE----LIS 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 334 LREKLKNAQLDADKSNvmaLQQGIQERDSQIKMLTEQVEQytKEMEKNTCIIEDLKNElQRNKGASTLSQQTHMKIQSTL 413
Cdd:TIGR02168 531 VDEGYEAAIEAALGGR---LQAVVVENLNAAKKAIAFLKQ--NELGRVTFLPLDSIKG-TEIQGNDREILKNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 414 DILKEKTKEAER-----------TAELAEADAREKDKELVEALKRLKDY------------ESGVYGLEDAVVEIKNCKN 470
Cdd:TIGR02168 605 KDLVKFDPKLRKalsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDlvrpggvitggsAKTNSSILERRREIEELEE 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 471 QIKIRDREIEILTKEINKLELKISDFLDENEALRERvGLEPKTMIDLTEFRNSKHL-KQQQYRAENQILLKEIESLEEER 549
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKE-LEELSRQISALRKDLARLEaEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 550 LDLKKKIRQMAQERGKRSATSGLTTEDLN-LTENISQGDRISerkldllslknmSEAQSKNEFLSRELIEKERDLERSRT 628
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEqLKEELKALREAL------------DELRAELTLLNEEAANLRERLESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 629 VIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVkggetslIIPSLERLVNAIESKNA--EGIFDASLHLKAQVD 706
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-------LESELEALLNERASLEEalALLRSELEELSEELR 904
|
730 740 750
....*....|....*....|....*....|....*..
gi 109255234 707 QLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHL 743
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
114-853 |
1.52e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 114 RNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQL----ALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQK---Q 186
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRREREKAeryqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEeleK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 187 IDSQKETLLSRRGEDSDYRSQLSKKNYELIQylDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQ 266
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 267 TDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDPIMV---AVNAKVEEWKlilsskdDEIIEYQQMLHNLREKLKNAQL 343
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAeleEVDKEFAETR-------DELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 344 DADKSNVMALQQGIQERD--SQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTK 421
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADlnAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 422 EAERTAELAEADAR---EKDKELVEALKRLKDYESGVYGLEDAVVEIK------------NCKNQIKIRDREIEILTKEI 486
Cdd:TIGR02169 487 KLQRELAEAEAQARaseERVRGGRAVEEVLKASIQGVHGTVAQLGSVGeryataievaagNRLNNVVVEDDAVAKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 487 NKlELKIS--DFLDENEALRERVGLEPKTM-------IDLTEFrnskhlkQQQYRAENQILLKE---IESLEEERlDLKK 554
Cdd:TIGR02169 567 LK-RRKAGraTFLPLNKMRDERRDLSILSEdgvigfaVDLVEF-------DPKYEPAFKYVFGDtlvVEDIEAAR-RLMG 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 555 KIRQMAQER-----------GKRSATSGLTTEDLNLTENISQGDRISERKLDLLSLKN--------MSEAQSKNEFLSRE 615
Cdd:TIGR02169 638 KYRMVTLEGelfeksgamtgGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSelrrienrLDELSQELSDASRK 717
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 616 LIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGmkeiLQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEgif 695
Cdd:TIGR02169 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--- 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 696 daslhlkAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSllrqsegsNVVFKGIDLPDGIAPSSAS 775
Cdd:TIGR02169 791 -------SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ--------ELQEQRIDLKEQIKSIEKE 855
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 776 IINSQNEyLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLEDQVQQ 853
Cdd:TIGR02169 856 IENLNGK-KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1082-1857 |
2.47e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1082 HLRTSLKQMEERNFELETKFAELTKinldaqkvEQMLRDELADSVSKAVSDADRqriLELEKNEMELKVEV------SKL 1155
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKE--------AEEELEELTAELQELEEKLEE---LRLEVSELEEEIEElqkelyALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1156 REISDIaRRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDEKSLIAKlhqhnvSLQLSEATALGKLESITSKLQKMEAYN 1235
Cdd:TIGR02168 295 NEISRL-EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA------ELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1236 LRLEQKLDEKEQALYYARlegrNRAKHLRQTIQSLRRQFsgalplaQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNME 1315
Cdd:TIGR02168 368 EELESRLEELEEQLETLR----SKVAQLELQIASLNNEI-------ERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1316 NKTLEMELKLKGLEELISTLKDTkgAQKVINWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQ 1395
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERL--EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1396 QNKFHEERQMAWDQREVDLERQLDIF----DRQQNEILNAAQKFEEATGSIPDPSLPLPNQLE---IALRKIKENIRIIL 1468
Cdd:TIGR02168 515 QSGLSGILGVLSELISVDEGYEAAIEaalgGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPldsIKGTEIQGNDREIL 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1469 ETRATCKSLEEKLKEKESALRLAEQNILSRDKVI------NELRLRLPA------------------TAEREKLIAELGR 1524
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVddldnaLELAKKLRPgyrivtldgdlvrpggviTGGSAKTNSSILE 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1525 KEMEpkshhtLKIAHQTIANMQARLNQKEEVLKKYQRLLEkAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAW 1604
Cdd:TIGR02168 675 RRRE------IEELEEKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1605 DLMKQSPTPVPTNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQ----------E 1674
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNeeaanlrerlE 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1675 NHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVER---------LKSQLALKEKQQKALS 1745
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERasleealalLRSELEELSEELRELE 907
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1746 RALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNN- 1824
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPv 987
|
810 820 830
....*....|....*....|....*....|....*....
gi 109255234 1825 ------ELQKKQKAYNKILREKEEIDQENDELKRQIKRL 1857
Cdd:TIGR02168 988 nlaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1640-1933 |
2.60e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1640 LLVKLKKVSQDLERQREITELKVKEFENIKLQLQEnHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQaqKEANSRAP 1719
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAE-LEAELEELRLELEELELELEEAQAEEYELLAELA--RLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1720 TTTMRN----LVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRhTRELKTQVEDLN 1795
Cdd:COG1196 307 LEERRReleeRLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE-LAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1796 ENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQgkpltdNKQSLIE 1875
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA------ELEEEEE 459
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 109255234 1876 ELQRKVKKLENQLEGKVEEV-DLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1933
Cdd:COG1196 460 ALLELLAELLEEAALLEAALaELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1347-1931 |
4.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 4.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1347 WHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQN 1426
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1427 EILNAAQKFEEATgsipdpslplpNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELR 1506
Cdd:COG1196 310 RRRELEERLEELE-----------EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1507 LRLpATAEREKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEDLHILHH 1586
Cdd:COG1196 379 EEL-EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1587 RLELQADSSLNKFKQTAWDlmkqsptpvptnkhfirlAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFE 1666
Cdd:COG1196 458 EEALLELLAELLEEAALLE------------------AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1667 N-IKLQLQENHEDEVKKVKAEVEDL-----KYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQ 1740
Cdd:COG1196 520 RgLAGAVAVLIGVEAAYEAALEAALaaalqNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1741 QKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLN 1820
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1821 DLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLtsglqgkpltdnKQSLIEELQRKVKKLENQLEGKVEEVDLKPM 1900
Cdd:COG1196 680 ELEELAERLAEEELELEEALLAEEEEERELAEAEEER------------LEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
570 580 590
....*....|....*....|....*....|.
gi 109255234 1901 KEKNAKEELIRWEEGKKWQAKIEGIRNKLKE 1931
Cdd:COG1196 748 LEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| DUF1633 |
pfam07794 |
Protein of unknown function (DUF1633); This family contains sequences derived from a group of ... |
1765-1941 |
2.43e-07 |
|
Protein of unknown function (DUF1633); This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana. These sequences are highly similar and the region concerned is about 100 residues long.
Pssm-ID: 116408 [Multi-domain] Cd Length: 698 Bit Score: 56.43 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1765 SATSQKEAHLNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQ----KKQKAYNKILRek 1840
Cdd:pfam07794 458 RAIREEDPHLGADQ-----DREVRFGAEGIVPGIERLKIELSTSKDLEKGYAEKIGFMEMEFGgleaDKQMARNQIHR-- 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1841 eeIDQENDELKRQIKRLTSGLQG--KPLTDNK-------QSLIEELQRK--VKKLENQLEGKVEEVDLK-PMKEKNAKEE 1908
Cdd:pfam07794 531 --LEEKKDELSKKVLDLTSIAQGakKAVHDAKvelaaayLKLLAGIKDKwvAKKEFTVLEGQAAEVESNlALIDQITKAA 608
|
170 180 190
....*....|....*....|....*....|...
gi 109255234 1909 LIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTK 1941
Cdd:pfam07794 609 IDLTLEKPRFQAEIDDLEARCKLKEVSDFTLSK 641
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
789-1371 |
3.70e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 789 QELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLED--QVQQDAIKVKEYNNLLN 866
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEakKKAEEAKKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 867 ALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELER--QLRKENEKQKNELLSMEAEVCEKIGCLQRFKEMAIF 944
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 945 KIAALQKVvdnsvslselELANKQYNELTAKYRDILQKDnmlvqrtsnlehleceniSLKEQVESINKELEItKEKLHTI 1024
Cdd:PTZ00121 1406 KADELKKA----------AAAKKKADEAKKKAEEKKKAD------------------EAKKKAEEAKKADEA-KKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1025 EQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSlkqmEERNFELETKFAEL 1104
Cdd:PTZ00121 1457 KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA----EEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1105 TKINLDAQKVEQMLRdelADSVSKAVsdadrqrilELEKNEMELKVE-VSKLREISDIARRQVEILNAQQQSRDKEVESL 1183
Cdd:PTZ00121 1533 AKKADEAKKAEEKKK---ADELKKAE---------ELKKAEEKKKAEeAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1184 RMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHL 1263
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1264 RQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNM--ENKTLEMELKLKGLEELISTLKDTKGA 1341
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKaeEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
570 580 590
....*....|....*....|....*....|
gi 109255234 1342 QKVINWHMKIEELRLQELKLNRELVKDKEE 1371
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1236-1857 |
4.20e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.71 E-value: 4.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1236 LRLEQKLDEKEQALYYARLEG-RNRAKHLRQTIQSLRRQFSGALplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNM 1314
Cdd:COG1196 216 RELKEELKELEAELLLLKLRElEAELEELEAELEELEAELEELE--AELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1315 ENKTLEMELKLKGLEELISTLKDTKGAQKVinwhmKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIV 1394
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEE-----ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1395 QQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATgsipdpslplpNQLEIALRKIKENIRIILETRATC 1474
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALL-----------ERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1475 KSLEEKLKEKESALRLAEQNILSRDKVINELRLRLpatAEREKLIAELGRKEMEPKSHHTLKIAHQtiANMQARLNQ-KE 1553
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEA---ALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGvKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1554 EVLKKYQRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAWDLMKQSPTPVPTnkhFIRLAEMEQTVAEQ 1633
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT---FLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1634 DDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQcLKSELQAQKE 1713
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA-GGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1714 ANSRAptttmRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVED 1793
Cdd:COG1196 669 ELLAA-----LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109255234 1794 LNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQK-------AYNKILREKEEIDQENDELKRQIKRL 1857
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIEALGPvnllaieEYEELEERYDFLSEQREDLEEARETL 814
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
884-1889 |
7.63e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 7.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 884 RKITVLQVN--EKSLIRQYTTLVELERQLRKenekqknellsmeaevcekigcLQRFKEMAifkiaalqkvvdnsvslse 961
Cdd:TIGR02168 174 RKETERKLErtRENLDRLEDILNELERQLKS----------------------LERQAEKA------------------- 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 962 lelanKQYNELTAKYRDiLQKDNMLVQRTSNLEHLEceniSLKEQVESINKELEITKEKLHTIEQAWEQetkLGNESSMD 1041
Cdd:TIGR02168 213 -----ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLEE---LRLEVSEL 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1042 KAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDE 1121
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1122 LadsvskavsDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQLldYQAQSDEKSLIA 1201
Cdd:TIGR02168 360 L---------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR--ERLQQEIEELLK 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1202 KLHQHNVSLQLSEATALGK-LESITSKLQKMEAYNLRLEQKLDEKEQALYYArlegRNRAKHLRQTIQSLRRqfsgalpl 1280
Cdd:TIGR02168 429 KLEEAELKELQAELEELEEeLEELQEELERLEEALEELREELEEAEQALDAA----ERELAQLQARLDSLER-------- 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1281 aqqekfsktmiqlqndklkIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTlkdTKGAQKVInwhmkieELRLQELk 1360
Cdd:TIGR02168 497 -------------------LQENLEGFSEGVKALLKNQSGLSGILGVLSELISV---DEGYEAAI-------EAALGGR- 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1361 LNRELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQMAWDQREVDLERQL---DIFDRQQNEILNAAQKFEE 1437
Cdd:TIGR02168 547 LQAVVVENLNAAK----------KAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILkniEGFLGVAKDLVKFDPKLRK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1438 ATGSIPDPSLPLPNqLEIALRKIKEniriiLETRATCKSLEEKLKEKESAL----RLAEQNILSRDKVINELRlrlpata 1513
Cdd:TIGR02168 617 ALSYLLGGVLVVDD-LDNALELAKK-----LRPGYRIVTLDGDLVRPGGVItggsAKTNSSILERRREIEELE------- 683
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1514 erekliaelgrkemepkshhtlkiahQTIANMQARLNQKEEVLKKYQRLLEkAREEQREIVKKHEEDLHILHHRLELQad 1593
Cdd:TIGR02168 684 --------------------------EKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKD-- 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1594 sslnkfkqtawdlmkqsptpvptnkhFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEfeniklqlq 1673
Cdd:TIGR02168 735 --------------------------LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE--------- 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1674 enHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAptttmRNLVERLKSQLALKEKQQKALSRALLELRA 1753
Cdd:TIGR02168 780 --AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL-----RERLESLERRIAATERRLEDLEEQIEELSE 852
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1754 EMTAAAEERIISATSQKEAHLNVQQIVDrhtrelktQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAY 1833
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLN--------ERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 1834 NKILREKEEIDQENDELKRQIKRLTSGLQG--KPLTDNKQSLIEELQRKVKKLENQLE 1889
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEeaEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
243-563 |
9.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 9.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDpimvAVNAKVEEWKLILSSKDD 322
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE----KLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 323 EIIEYQQMLHNLREKLknAQLDADKSNVMALQQGIQ--ERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGAST 400
Cdd:TIGR02169 752 EIENVKSELKELEARI--EELEEDLHKLEEALNDLEarLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 401 LSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDRE-- 478
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEle 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 479 --IEILTKEINKLELKISDFLDENEALRERVGL---EPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEE---RL 550
Cdd:TIGR02169 910 aqIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeeIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVlkrLD 989
|
330
....*....|...
gi 109255234 551 DLKKKIRQMAQER 563
Cdd:TIGR02169 990 ELKEKRAKLEEER 1002
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
206-559 |
9.66e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 9.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 206 SQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQV 285
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 286 QELTDLLKSKNEEddpiMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDADKS--NVMALQQGIQERDSQ 363
Cdd:TIGR02168 771 EEAEEELAEAEAE----IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLerRIAATERRLEDLEEQ 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 364 IKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVE 443
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 444 ALKRLKDYESGVYGLEDAVVEikncknQIKIRDREIEILTKEINKLELKISDFLDENEALRERVGlePKTMIDLTEFrns 523
Cdd:TIGR02168 927 LELRLEGLEVRIDNLQERLSE------EYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG--PVNLAAIEEY--- 995
|
330 340 350
....*....|....*....|....*....|....*.
gi 109255234 524 khlkqQQYRAENQILLKEIESLEEERLDLKKKIRQM 559
Cdd:TIGR02168 996 -----EELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-661 |
9.93e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 9.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 21 QEELADNLLISLSKVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFEnQLKTKVMKLENELEM 100
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-EAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 101 AQQsaggrDTRFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDI 180
Cdd:COG1196 300 LEQ-----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 181 IDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRM 260
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 261 KAIVHQTDNVIDQLKKENDHYQLQVQELTDLL---KSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEyqQMLHNLREK 337
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELaeaAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 338 LKNAQLDADKSNVMALQQGIQERDSQIKMLteqveqytkemekntciIEDLKnelQRNKGASTLSQQTHMKIQSTLDILK 417
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAA-----------------IEYLK---AAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 418 EKTKEAERTAELAEadarekdkELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKISDFL 497
Cdd:COG1196 593 ARGAIGAAVDLVAS--------DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 498 DENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQErgkrsatsgLTTEDL 577
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ---------LEAERE 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 578 NLTENISQGDRISERKLDLLSLKNMSEAQsknefLSRELIEKERDLERSRTV----IAKF---QNKLKELVEENKQLEEG 650
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEE-----LERELERLEREIEALGPVnllaIEEYeelEERYDFLSEQREDLEEA 810
|
650
....*....|.
gi 109255234 651 MKEILQAIKEM 661
Cdd:COG1196 811 RETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
963-1272 |
2.71e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 963 ELANKQYNELTAKYRDILQKdnmLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQEtklgnessmdK 1042
Cdd:COG1196 221 ELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA----------Q 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1043 AKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDEL 1122
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1123 ADSVSKAVS-----DADRQRILELEKNEMELKVEVSKL-REISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDE 1196
Cdd:COG1196 368 LEAEAELAEaeeelEELAEELLEALRAAAELAAQLEELeEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109255234 1197 KSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAKHLRQTIQSLRR 1272
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE--ADYEGFLEGVKAALLLAGLRG 521
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1662-2451 |
4.41e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 4.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1662 VKEFENIKLQLQENHEDEVKKVKAE--VEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEK 1739
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAkkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1740 QQKALSRALLELRAEMTAAAEERIISATSQKEAHLNvqqivdRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNL 1819
Cdd:PTZ00121 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA------KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1820 NDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKV--KKLENQLEGKVEEVDl 1897
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAaaKKKADEAKKKAEEKK- 1431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1898 KPMKEKNAKEELIRWEEGKK---WQAKIEGIRNKLKEKEgevftltkqlntlkdlfaKADKEKLTLQRKLKTTGMTVDQV 1974
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAK------------------KADEAKKKAEEAKKADEAKKKAE 1493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1975 LGIRALESEKELEELKKRNLDLENDILYMRAHQALPRDsvvedlhlQNRYLQEKLHALEKQFSKDTYSKPSISGIESDDH 2054
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE--------EAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2055 CQrEQELQKENLKLSSENIELKFQLEQAnkdlprlknQVRDLKEMCEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTI 2134
Cdd:PTZ00121 1566 AE-EAKKAEEDKNMALRKAEEAKKAEEA---------RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2135 GLMKKVVEKVQRENEQLKKAsgiltsEKMANIEQENEKLKAELEKLKAhlgHQLSMHYESKTKGTEKIIAEN------ER 2208
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKA------EEENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEALKKEAeeakkaEE 1706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2209 LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQfaESRGPQLEGADSKSWKSIVVTRMYETKlKELETDIAK 2288
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE--EAKKDEEEKKKIAHLKKEEEKKAEEIR-KEKEAVIEE 1783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2289 KNQSITDLKQLVKEATEREQKVNKYNeDLEQQIKILKHVPEGAETEQGLKRElqVLRLANHQLDKEKAELIHQIEANKDQ 2368
Cdd:PTZ00121 1784 ELDEEDEKRRMEVDKKIKDIFDNFAN-IIEGGKEGNLVINDSKEMEDSAIKE--VADSKNMQLEEADAFEKHKFNKNNEN 1860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2369 SGAESTIPDADQLKEKIKDLETQLKMSDLEKQhLKEEIKKLKKELENFDPSFFEEIEDlKYNYKEEVKKNI-LLEEKVKK 2447
Cdd:PTZ00121 1861 GEDGNKEADFNKEKDLKEDDEEEIEEADEIEK-IDKDDIEREIPNNNMAGKNNDIIDD-KLDKDEYIKRDAeETREEIIK 1938
|
....
gi 109255234 2448 LSEQ 2451
Cdd:PTZ00121 1939 ISKK 1942
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1584-1856 |
5.24e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 5.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1584 LHHRLELQADSSLNKFKQTawdlmkQSPTPVPTNKHFIRlAEM--EQTVAEQDDSLSSLLVKLKKVSQDLERQREitelK 1661
Cdd:COG4913 182 LRRRLGIGSEKALRLLHKT------QSFKPIGDLDDFVR-EYMleEPDTFEAADALVEHFDDLERAHEALEDARE----Q 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1662 VKEFEniklQLQENHEdEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAptttmrnLVERLKSQLALKEKQQ 1741
Cdd:COG4913 251 IELLE----PIRELAE-RYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA-------ELARLEAELERLEARL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1742 KALSRALLELRAEMT-------AAAEERIISATSQKEAHLNVQQIVDRHTRELKTQV----EDLNENLLKLKEALKTSKN 1810
Cdd:COG4913 319 DALREELDELEAQIRgnggdrlEQLEREIERLERELEERERRRARLEALLAALGLPLpasaEEFAALRAEAAALLEALEE 398
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 109255234 1811 RENSLTDNLNDLNNELQKKQKAYNKILREKEE-------IDQENDELKRQIKR 1856
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASlerrksnIPARLLALRDALAE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-1092 |
5.26e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 5.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 269 NVIDQLKKENDHYQLQVQELTDLLKSKNEEddpiMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKlknaqldadks 348
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAE----LQELEEKLEELRLEVSELEEEIEELQKELYALANE----------- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 349 nvmalqqgIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRNKGAstlsqqthmkiqstLDILKEKTKEAERTAE 428
Cdd:TIGR02168 297 --------ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE--------------LAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 429 LAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIrdrEIEILTKEINKLELKISDFLDENEALRERVG 508
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN---EIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 509 LEPKTMI--DLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSAT-------SGLTTEDLNL 579
Cdd:TIGR02168 432 EAELKELqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLerlqenlEGFSEGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 580 TENISQGDRISERKLDLLSLKNMSEAQ-------------SKNEFLSRELIE--KERDLERsRTVIAKFQNKLKELVEEN 644
Cdd:TIGR02168 512 LKNQSGLSGILGVLSELISVDEGYEAAieaalggrlqavvVENLNAAKKAIAflKQNELGR-VTFLPLDSIKGTEIQGND 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 645 KQLEEGMKEILQAIKEMQK-DPDVKGG-----ETSLIIPSLERLVNAIESKNAEG-IFDASLHLKAQVDQLTGRNEELRQ 717
Cdd:TIGR02168 591 REILKNIEGFLGVAKDLVKfDPKLRKAlsyllGGVLVVDDLDNALELAKKLRPGYrIVTLDGDLVRPGGVITGGSAKTNS 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 718 ELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQsEGSNVVFKGIDLPDGIAPSSASIiNSQNEYLIHLLQELENKEKK 797
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRK-ELEELEEELEQLRKELEELSRQI-SALRKDLARLEAEVEQLEER 748
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 798 LKNLEDSLEDYNRKFAvirhqqsllykEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKK 877
Cdd:TIGR02168 749 IAQLSKELTELEAEIE-----------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 878 ILAENSRKitvLQVNEKSLIRQYTTLVELERQLRKENEkqknELLSMEAEVCEkigcLQRFKEMAIFKIAALQKVVDnsV 957
Cdd:TIGR02168 818 EAANLRER---LESLERRIAATERRLEDLEEQIEELSE----DIESLAAEIEE----LEELIEELESELEALLNERA--S 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 958 SLSELELANKQYNELTAKYRDILQKdnmlvqrtsnLEHLECENISLKEQVESINKELEITKEKL-HTIEQAWEQ------ 1030
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESK----------RSELRRELEELREKLAQLELRLEGLEVRIdNLQERLSEEysltle 954
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 109255234 1031 ---ETKLGNESSMDKAKKSITnsdivSISKKITML---------EMKELNERQraEHCQKMYEHLRTSLKQMEE 1092
Cdd:TIGR02168 955 eaeALENKIEDDEEEARRRLK-----RLENKIKELgpvnlaaieEYEELKERY--DFLTAQKEDLTEAKETLEE 1021
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-739 |
8.86e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 8.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 87 LKTKVMKLENELEMAQQSAGGRDTRFLRNEICQLEKQLEQKDREL----EDMEKELEKEKKVNEQLALRNEEAENENSKL 162
Cdd:pfam15921 236 LKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEItgltEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 163 RRENKRLKKKNEQLCQDIIDYQKQIDSQKETLlsrrgedsdyRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKN 242
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEEL----------EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 243 LEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKENDHYQLQVQELTDLLKSKNEEDDPIMvavnakveewklilsskdd 322
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM------------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 323 eiiEYQqmlhnlreklknaqldadksnvMALQQGIQERDSQIKMLTEQVEQyTKEMEKNtcIIEDLknelqrnkgasTLS 402
Cdd:pfam15921 447 ---ERQ----------------------MAAIQGKNESLEKVSSLTAQLES-TKEMLRK--VVEEL-----------TAK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 403 QQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIKNCKNQIKIRDREIEIL 482
Cdd:pfam15921 488 KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEIL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 483 TKEI-NKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQyRAENQILLKEIESLEEERLDLK-------K 554
Cdd:pfam15921 568 RQQIeNMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK-DAKIRELEARVSDLELEKVKLVnagserlR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 555 KIRQMAQERGKRSATSGLTTEDLNlteNISQGDRISERkldllSLKNMSEA-QSKNEFLSRELIEKERDLERSRTVIakf 633
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNELN---SLSEDYEVLKR-----NFRNKSEEmETTTNKLKMQLKSAQSELEQTRNTL--- 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 634 qnklkelveenKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLK---------AQ 704
Cdd:pfam15921 716 -----------KSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKlsqelstvaTE 784
|
650 660 670
....*....|....*....|....*....|....*
gi 109255234 705 VDQLTGRNEELRQELRESRKEAINYSQQLAKANLK 739
Cdd:pfam15921 785 KNKMAGELEVLRSQERRLKEKVANMEVALDKASLQ 819
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1554-1863 |
9.63e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 9.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1554 EVLKKYQRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAWDLMKQSptpvptnkhfIRLAEMEQTVAEQ 1633
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELE----------AELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1634 DDSLSSLLVKLKKVSQD---LERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQA 1710
Cdd:COG1196 280 ELELEEAQAEEYELLAElarLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1711 QKEANSRAPTTTmRNLVERLKSQLALKEKQQKALSRALLELRAEmtAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQ 1790
Cdd:COG1196 360 LAEAEEALLEAE-AELAEAEEELEELAEELLEALRAAAELAAQL--EELEEAEEALLERLERLEEELEELEEALAELEEE 436
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109255234 1791 VEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQG 1863
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-975 |
9.80e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 9.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 230 EKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQLKKEndhYQLQVQELTDLLKSKNEEDDPIMVAVNAK 309
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKR---LEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 310 VEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDADKsnvmaLQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLK 389
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK-----LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 390 NELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDavveiknck 469
Cdd:TIGR02169 371 AELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE--------- 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 470 nqikirdrEIEILTKEINKLELKISDFLDENEALRERVglepktmidltefrnskhlkqQQYRAENQILLKEIESLEEER 549
Cdd:TIGR02169 442 --------EKEDKALEIKKQEWKLEQLAADLSKYEQEL---------------------YDLKEEYDRVEKELSKLQREL 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 550 LDLKKKIRQMAQERGKRSATSGLTTEDLN-LTENISQGDRISER-----------KLDLLSLKNMSEAQSKNEFLSRELI 617
Cdd:TIGR02169 493 AEAEAQARASEERVRGGRAVEEVLKASIQgVHGTVAQLGSVGERyataievaagnRLNNVVVEDDAVAKEAIELLKRRKA 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 618 --------EKERDLERSRTVIAK--FQNKLKELVEENKQLEEGMKEILQ---AIKEMQKDPDVKGG------ETSLIIPS 678
Cdd:TIGR02169 573 gratflplNKMRDERRDLSILSEdgVIGFAVDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKyrmvtlEGELFEKS 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 679 LERLVNAIESKNAEGI----FDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSE 754
Cdd:TIGR02169 653 GAMTGGSRAPRGGILFsrsePAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 755 GSNvvfkgidlpdgiapssASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKetwk 834
Cdd:TIGR02169 733 EKL----------------KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR---- 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 835 teSKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRKEN 914
Cdd:TIGR02169 793 --IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109255234 915 EKQKNELLSMEaevcEKIGCLQRFKEMAIFKIAALQKVVDNSVslSELELANKQYNELTAK 975
Cdd:TIGR02169 871 EELEAALRDLE----SRLGDLKKERDELEAQLRELERKIEELE--AQIEKKRKRLSELKAK 925
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
608-927 |
1.15e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 608 KNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIE 687
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 688 sknaegifdaslHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSegsnvvfkgidlpd 767
Cdd:COG1196 306 ------------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-------------- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 768 giapssasiinsqneyLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQSLLYKEYLSEKEtwktESKTIKEEKRKL 847
Cdd:COG1196 360 ----------------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE----AEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 848 EDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRKENEKQKNELLSMEAE 927
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1012-1805 |
3.34e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1012 KELEITKEKLHTIEQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITmlEMKELNERQRAEHCQKMYEHLRTSlkqme 1091
Cdd:PTZ00121 1077 KDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAE--DARKAEEARKAEDARKAEEARKAE----- 1149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1092 ernfelETKFAELTKINLDAQKVEQMLRDELADSVSKAVSDADRQRILELEKNEMELKVEVSKLREIsdiARRQVEILNA 1171
Cdd:PTZ00121 1150 ------DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE---ERKAEEARKA 1220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1172 QQQSRDKEVESLrmqllDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYY 1251
Cdd:PTZ00121 1221 EDAKKAEAVKKA-----EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1252 ARLEGRNRAKHLRQTIQSLRRqfsgalplAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEEL 1331
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKK--------ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1332 ISTLKDTKGAQKVINWHMKIEELRLQElklnrELVKDKEEIKylnniiseyeRTISSLEEEIVQQNKFHEERQMAWDQRE 1411
Cdd:PTZ00121 1368 AAEKKKEEAKKKADAAKKKAEEKKKAD-----EAKKKAEEDK----------KKADELKKAAAAKKKADEAKKKAEEKKK 1432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1412 VDLERQLDIFDRQQNEilnAAQKFEEAtgsipdpslplpnqleialrKIKENIRIILETRATCKSLEEKLKEKESALRLA 1491
Cdd:PTZ00121 1433 ADEAKKKAEEAKKADE---AKKKAEEA--------------------KKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1492 EQNILSRDKViNELRlrlpaTAEREKLIAELGRKEMEPKSHHTLKIAHQTIANMQARLNQ---KEEVLKKYQRLLEKARE 1568
Cdd:PTZ00121 1490 KKAEEAKKKA-DEAK-----KAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekkKADELKKAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1569 EQREIVKKHEEDLHILHHRLELQADSSlnkfKQTAWDLMKQSPTPVPTNKHFIRLAEMEQTVAEQddslssllvklkkVS 1648
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAE----EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE-------------LK 1626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1649 QDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKEsQCLKSELQAQKEANSRAPTTTMRNLVE 1728
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE-EAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 109255234 1729 RLKSQLALKEKQQKALSRALLELRAEMTAAAEERiiSATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEAL 1805
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA--EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-752 |
4.00e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 356 GIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQRnkgastlsqqthmkiqstldiLKEKTKEAERTAELAEadaR 435
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLER---------------------LRREREKAERYQALLK---E 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 436 EKDKELVEALKRLKDYESgvygledavveikncknQIKIRDREIEILTKEINKLELKISDFLDENEALRERVGLEPKTMI 515
Cdd:TIGR02169 220 KREYEGYELLKEKEALER-----------------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 516 DLTEfrnskhlkqqqyrAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLnltenisqgDRISERKLD 595
Cdd:TIGR02169 283 DLGE-------------EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI---------DKLLAEIEE 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 596 LlsLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLI 675
Cdd:TIGR02169 341 L--EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 109255234 676 IPSLERLVNAIesknaEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQ 752
Cdd:TIGR02169 419 SEELADLNAAI-----AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
75-486 |
4.52e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 75 KAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEE 154
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEE------------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 155 AENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEV 234
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 235 QNQEMRKNLEESVQEMEKMTDEynrMKAIVHQtdnvIDQLKKENDHYQLQVQELTDLLKSKNEEddpiMVAVNAKVEEWK 314
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSED---IESLAAE----IEELEELIEELESELEALLNERASLEEA----LALLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 315 LILSSKDDEIIEYQQMLHNLREKLKNAQLDadksnvmaLQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDLKNELQR 394
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELR--------LEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 395 NkgastlsqqthmkiqstLDILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESGVYGLEDAVVEIkncknqiki 474
Cdd:TIGR02168 973 R-----------------LKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI--------- 1026
|
410
....*....|..
gi 109255234 475 rDREIEILTKEI 486
Cdd:TIGR02168 1027 -DREARERFKDT 1037
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
967-1696 |
1.27e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 967 KQYNELTAKYRDiLQKDNMLVQRTSNLEHLEceniSLKEQVESINKELEITKEKLHTIEQAWEQetkLGNESSMDKAKKS 1046
Cdd:TIGR02168 213 ERYKELKAELRE-LELALLVLRLEELREELE----ELQEELKEAEEELEELTAELQELEEKLEE---LRLEVSELEEEIE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1047 ITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELADSV 1126
Cdd:TIGR02168 285 ELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1127 SKAV-----SDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQ------SD 1195
Cdd:TIGR02168 365 AELEelesrLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaelEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1196 EKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyARLEGRNRAkhLRQTIQSlRRQFS 1275
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ--ENLEGFSEG--VKALLKN-QSGLS 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1276 GALPLAQQ-----EKFSKTM------------IQLQNDKLKIMQEMKN-----------SQQEHRNMENKTLEMELKLKG 1327
Cdd:TIGR02168 520 GILGVLSElisvdEGYEAAIeaalggrlqavvVENLNAAKKAIAFLKQnelgrvtflplDSIKGTEIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1328 LEELISTL-KDTKGAQKVIN---WHMKI-------EELRLQELKLNRELVKD------------------------KEEI 1372
Cdd:TIGR02168 600 FLGVAKDLvKFDPKLRKALSyllGGVLVvddldnaLELAKKLRPGYRIVTLDgdlvrpggvitggsaktnssilerRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1373 KYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQ---REVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSLPL 1449
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQlrkELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1450 PNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAER-EKLIAELGRKEME 1528
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERlESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1529 pkshhtLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVK---KHEEDLHILHHRLElQADSSLNKFKQtawd 1605
Cdd:TIGR02168 840 ------LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNeraSLEEALALLRSELE-ELSEELRELES---- 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1606 lmkqsptpvptnkhfiRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQRE-ITELKVKEFENIkLQLQENHEDEVKKVK 1684
Cdd:TIGR02168 909 ----------------KRSELRRELEELREKLAQLELRLEGLEVRIDNLQErLSEEYSLTLEEA-EALENKIEDDEEEAR 971
|
810
....*....|..
gi 109255234 1685 AEVEDLKYLLDQ 1696
Cdd:TIGR02168 972 RRLKRLENKIKE 983
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1780-2407 |
1.31e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1780 VDRHTRELKTQVEDLNEnllKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTS 1859
Cdd:pfam15921 76 IERVLEEYSHQVKDLQR---RLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVH 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1860 GLQG-----KPLTDNKQSLIEELQRKVKKLENQLEG------KVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNK 1928
Cdd:pfam15921 153 ELEAakclkEDMLEDSNTQIEQLRKMMLSHEGVLQEirsilvDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1929 LKEKEGEVFTLTKQLNTLKD---------LFAKADK-EKLTLQRKLKTTGMTvDQVLGIRALESEKELEELKKRNLDLEN 1998
Cdd:pfam15921 233 ISYLKGRIFPVEDQLEALKSesqnkiellLQQHQDRiEQLISEHEVEITGLT-EKASSARSQANSIQSQLEIIQEQARNQ 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1999 DILYMRAHQALPR--DSVVEDLHLQNRYLQEKLHALEKQF------------SKDTYSKPS------ISGIESDDHcQRE 2058
Cdd:pfam15921 312 NSMYMRQLSDLEStvSQLRSELREAKRMYEDKIEELEKQLvlanselteartERDQFSQESgnlddqLQKLLADLH-KRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2059 QEL---QKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKE-KAEVQRKLGHVRGSGRSGKTIP----EL 2130
Cdd:pfam15921 391 KELsleKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEKVSsltaQL 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2131 EKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQEN--EKLKAELEKLKAHLGHQLS--MHYESKTKGTEKIIAEN 2206
Cdd:pfam15921 471 ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERaiEATNAEITKLRSRVDLKLQelQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2207 ERLRKELKKETDAAEKLRIAKNNL------------EILNEKMTVQLEETGKRLQFAESRGPQlegaDSKSWKsivvTRM 2274
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILK----DKKDAK----IRE 622
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2275 YETKLKELETDIAK-------KNQSITDLKQ----LVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQGlKRELQv 2343
Cdd:pfam15921 623 LEARVSDLELEKVKlvnagseRLRAVKDIKQerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQ- 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109255234 2344 LRLANHQLDKEKAELIHQI----EANKDQSGAESTIP----DADQLKEKIKDLETQLKMSDLEKQHLKEEIK 2407
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQKQITakrgQIDALQSKIQFLEEAMTNANKEKHFLKEEKN 772
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
34-428 |
1.31e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 34 KVEVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfl 113
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE------------- 1631
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 114 RNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKqidsqKET 193
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK-----AEE 1706
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 194 LLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKievQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNVIDQ 273
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK---KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 274 -LKKENDHYQLQVQELTDLLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMlhnLREKLKNAQLDADKSNVMA 352
Cdd:PTZ00121 1784 eLDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNM---QLEEADAFEKHKFNKNNEN 1860
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 109255234 353 LQQGIQERDSQIKmlTEQVEQYTKEMEKNTCIIEDLKNELQRNKGASTLSQQTHMKIQSTLDILKEKTKEAERTAE 428
Cdd:PTZ00121 1861 GEDGNKEADFNKE--KDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETRE 1934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1147-1957 |
1.36e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1147 ELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESL---RMQLLDYQAQSDEKS------LIAKLHQHNVSLQLSEATA 1217
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLrreREKAERYQALLKEKReyegyeLLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1218 LGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALplAQQEKFSKTMIQLQNDK 1297
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE--RSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1298 LKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVinwhmKIEELRLQELKLNRELVKDKEEIKYLNN 1377
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-----ELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1378 IISEYERTISSLEEEIVQqnkfheeRQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSLPLpNQLEIAL 1457
Cdd:TIGR02169 400 EINELKRELDRLQEELQR-------LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1458 RKIKENIRIILETRatcKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAereKLIAELGRKEMEpkshHTLKI 1537
Cdd:TIGR02169 472 YDLKEEYDRVEKEL---SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH---GTVAQLGSVGER----YATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1538 AHQTIANMQARLNQKEEVLKKYQRLLeKAREEQREI------VKKHEEDLHILHhrlelqadssLNKFKQTAWDLMKQSP 1611
Cdd:TIGR02169 542 EVAAGNRLNNVVVEDDAVAKEAIELL-KRRKAGRATflplnkMRDERRDLSILS----------EDGVIGFAVDLVEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1612 TPVPTNKHFIRlaemEQTVAEQDDSLSSLLVKLKKVSQD---LERQREITELKVKEFENIKLQLQEnhEDEVKKVKAEVE 1688
Cdd:TIGR02169 611 KYEPAFKYVFG----DTLVVEDIEAARRLMGKYRMVTLEgelFEKSGAMTGGSRAPRGGILFSRSE--PAELQRLRERLE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1689 DLKYLLDQSQKESQCLKSELQAQKEANSRAP--TTTMRNLVERL-------KSQLALKEKQQKALSRALLELRAEMTAAA 1759
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSDASrkIGEIEKEIEQLeqeeeklKERLEELEEDLSSLEQEIENVKSELKELE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1760 EERiisATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILRE 1839
Cdd:TIGR02169 765 ARI---EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1840 KEEIDQENDELKRQIkrltsglqgkpltDNKQSLIEELQRKVKKLENQLEgkveevDLKPMKEKNAKEELIRWEEGKKWQ 1919
Cdd:TIGR02169 842 RIDLKEQIKSIEKEI-------------ENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDELEAQLRELE 902
|
810 820 830
....*....|....*....|....*....|....*...
gi 109255234 1920 AKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEK 1957
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPK 940
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
788-1525 |
1.70e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 788 LQELENKEKKLKNLEDSLEDYNRKFAVIRHQ--QSLLYKEYLSEKET-----WKTESKTIKEEKRKLEDQVQQDAIKVKE 860
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQaeKAERYKELKAELRElelalLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 861 YNNLLNALQMDSDEMKKILAENSRKITVLQvneKSLIRQYTTLVELERQLRKENEKQKNeLLSMEAEVCEKIGCLQRFKE 940
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQ---KELYALANEISRLEQQKQILRERLAN-LERQLEELEAQLEELESKLD 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 941 MAIFKIAALQKVVDnsVSLSELELANKQYNELTAKYRDILQKdnmLVQRTSNLEHLECENISLKEQVESINKELEITKEK 1020
Cdd:TIGR02168 334 ELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESR---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1021 LHTIEQAWE--QETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRAEHCQKMYEHLRTSLKQME------- 1091
Cdd:TIGR02168 409 LERLEDRRErlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAErelaqlq 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1092 ------ERNFELETKFAELTKINLDAQKVEQMLRDELADSVS------KAVSDADRQRILELE-KNEMELKVEVSKLRE- 1157
Cdd:TIGR02168 489 arldslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeAAIEAALGGRLQAVVvENLNAAKKAIAFLKQn 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1158 ---------ISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSdEKSLIAKLHQHNVSLQLSEATALGK-------- 1220
Cdd:TIGR02168 569 elgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL-RKALSYLLGGVLVVDDLDNALELAKklrpgyri 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1221 -------------------------------LESITSKLQKMEAYNLRLEQKLDEKEQALYyarlEGRNRAKHLRQTIQS 1269
Cdd:TIGR02168 648 vtldgdlvrpggvitggsaktnssilerrreIEELEEKIEELEEKIAELEKALAELRKELE----ELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1270 LRRQFSGALP-----LAQQEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKV 1344
Cdd:TIGR02168 724 LSRQISALRKdlarlEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1345 I--NWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFD 1422
Cdd:TIGR02168 804 AldELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1423 RQQNEILNAAQKFEEATGSIpdpslplpNQLEIALRKIKENIRIILETRATCKSLEEKLKEKESAL--RLAEQNILSRDK 1500
Cdd:TIGR02168 884 SLEEALALLRSELEELSEEL--------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqeRLSEEYSLTLEE 955
|
810 820
....*....|....*....|....*
gi 109255234 1501 VINELRLRLPATAEREKLIAELGRK 1525
Cdd:TIGR02168 956 AEALENKIEDDEEEARRRLKRLENK 980
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1373-2183 |
2.01e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1373 KYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKfeeatgsipdpslplPNQ 1452
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRR---------------ESQ 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1453 LEIALRKIKENIRIILETRATCKslEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAE-------REKLIAELGRK 1525
Cdd:pfam15921 139 SQEDLRNQLQNTVHELEAAKCLK--EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEasgkkiyEHDSMSTMHFR 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1526 EMEPKSHHTLKIAHQTIANMQARLNQKEEVLK--------KYQRLLEKAREEQREIVKKHEEDLHILHHRLElQADSSLN 1597
Cdd:pfam15921 217 SLGSAISKILRELDTEISYLKGRIFPVEDQLEalksesqnKIELLLQQHQDRIEQLISEHEVEITGLTEKAS-SARSQAN 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1598 KFKQTAWDLMKQSPTpvpTNKHFIR-LAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQE-- 1674
Cdd:pfam15921 296 SIQSQLEIIQEQARN---QNSMYMRqLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQes 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1675 -NHEDEVKKVkaevedlkyLLDQSQKEsqclkSELQAQKEANSRAPTTTMRN--LVERLKSQLALKEKQQKALSRALLEL 1751
Cdd:pfam15921 373 gNLDDQLQKL---------LADLHKRE-----KELSLEKEQNKRLWDRDTGNsiTIDHLRRELDDRNMEVQRLEALLKAM 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1752 RAEMTAAAEERIISATSQKEAHLNVQQivdrhtreLKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQK 1831
Cdd:pfam15921 439 KSECQGQMERQMAAIQGKNESLEKVSS--------LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKER 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1832 AynkilrekeeidqendelkrqikrltsglqgkpltdnkqslIEELQRKVKKLENQLEGKVEEVDlkpmKEKNAKEELir 1911
Cdd:pfam15921 511 A-----------------------------------------IEATNAEITKLRSRVDLKLQELQ----HLKNEGDHL-- 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1912 weegKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADK-------EKLTLQRKLKTTGMTVdQVLGIRALESEK 1984
Cdd:pfam15921 544 ----RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRtagamqvEKAQLEKEINDRRLEL-QEFKILKDKKDA 618
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1985 ELEELKKRNLDLENDILYMrAHQALPRDSVVEDLHLQNRYLQEKLHALEKQFSKDTyskpsisgiesddhcqREQELQKE 2064
Cdd:pfam15921 619 KIRELEARVSDLELEKVKL-VNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLS----------------EDYEVLKR 681
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2065 NLKLSSENIE-----LKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEVQRKLGHVRGSgrsgktIPELEKTIGLMKK 2139
Cdd:pfam15921 682 NFRNKSEEMEtttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQ------IDALQSKIQFLEE 755
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 109255234 2140 VVEKVQRENEQLKKASGILtSEKMANIEQENEKLKAELEKLKAH 2183
Cdd:pfam15921 756 AMTNANKEKHFLKEEKNKL-SQELSTVATEKNKMAGELEVLRSQ 798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1622-1947 |
2.11e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1622 RLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEvKKVKAEVEDLKYLLDQSQKES 1701
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE-EKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1702 QCLKSELQ--AQKEANSRAPTTTMRNLVERLKSQLALKEKQQK-ALSRALLELRAEMTAAAE--ERIISATSQKEAHLN- 1775
Cdd:TIGR02169 754 ENVKSELKelEARIEELEEDLHKLEEALNDLEARLSHSRIPEIqAELSKLEEEVSRIEARLReiEQKLNRLTLEKEYLEk 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1776 -----VQQIVDRHTR--ELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQEND 1848
Cdd:TIGR02169 834 eiqelQEQRIDLKEQikSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1849 ELKRQIKRLTSGLQG-----KPLTDNKQSLIEE---------LQRKVKKLENQLEgKVEEVDLKPMKEknakeelirWEE 1914
Cdd:TIGR02169 914 KKRKRLSELKAKLEAleeelSEIEDPKGEDEEIpeeelsledVQAELQRVEEEIR-ALEPVNMLAIQE---------YEE 983
|
330 340 350
....*....|....*....|....*....|...
gi 109255234 1915 GKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLK 1947
Cdd:TIGR02169 984 VLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1678-1887 |
2.18e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1678 DEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNL-VERLKSQLALKEKQQKALSRALLELRAEMT 1756
Cdd:PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLsLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1757 AA--AEERIISATSQkeahlNVQQivdrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTdnlnDLNNELQKKQKAYN 1834
Cdd:PRK11281 153 SLqtQPERAQAALYA-----NSQR-----LQQIRNLLKGGKVGGKALRPSQRVLLQAEQALL----NAQNDLQRKSLEGN 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 1835 KILREKEEidQENDELKRQIKRLTSGLQgkpltdNKQSLI-----EELQRKVKKLENQ 1887
Cdd:PRK11281 219 TQLQDLLQ--KQRDYLTARIQRLEHQLQ------LLQEAInskrlTLSEKTVQEAQSQ 268
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1063-1854 |
2.28e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 2.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1063 EMKELNERQRAEHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELADSVSKAVSDADRQRILELE 1142
Cdd:pfam02463 202 LKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1143 KNEMELKVEVSKLREIS----DIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATAL 1218
Cdd:pfam02463 282 KLQEEELKLLAKEEEELkselLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1219 GKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQL--QND 1296
Cdd:pfam02463 362 EKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEesIEL 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1297 KLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDTKGAQKVINWHMKIEELRLQELKLNRELVKDKEEIKYLN 1376
Cdd:pfam02463 442 KQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1377 NIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSLPL-PNQLEI 1455
Cdd:pfam02463 522 GRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIaVLEIDP 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1456 ALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREKLIAELGRKEMEPKSHHTL 1535
Cdd:pfam02463 602 ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1536 KIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEDLHILHHRLELQADSSLNKFKQTAWDLMKQSPTPVP 1615
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEE 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1616 TNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLD 1695
Cdd:pfam02463 762 KEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1696 QSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQQKALSRA-------LLELRAEMTAAAEERIISATS 1768
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEkekeekkELEEESQKLNLLEEKENEIEE 921
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1769 QKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNN----ELQKKQKAYNKILREKEEID 1844
Cdd:pfam02463 922 RIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLmaieEFEEKEERYNKDELEKERLE 1001
|
810
....*....|
gi 109255234 1845 QENDELKRQI 1854
Cdd:pfam02463 1002 EEKKKLIRAI 1011
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1453-1958 |
2.31e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1453 LEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPAT-AEREKLIAELGRKEMEPKS 1531
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELrEELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1532 HHTLKIAHQTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEdlhilhHRLELQADSSLNKFKqtawdlmkqsp 1611
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE------LKEKAEEYIKLSEFY----------- 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1612 tpvptNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITElKVKEFENIKLQLQENHE--DEVKKVKAEVED 1689
Cdd:PRK03918 303 -----EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK-KLKELEKRLEELEERHElyEEAKAKKEELER 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1690 LKYLLDQSQKESqcLKSELQAQKEANsraptTTMRNLVERLKSQLALKEKQQKALSRALLELR-AEMTAAAEERIISATS 1768
Cdd:PRK03918 377 LKKRLTGLTPEK--LEKELEELEKAK-----EEIEEEISKITARIGELKKEIKELKKAIEELKkAKGKCPVCGRELTEEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1769 QKEahlnvqqIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDN--------LNDLNNELQKKQKAYN-----K 1835
Cdd:PRK03918 450 RKE-------LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklkeLAEQLKELEEKLKKYNleeleK 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1836 ILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKE------------- 1902
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEEleerlkelepfyn 602
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 109255234 1903 -----KNAKEEL-IRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKL 1958
Cdd:PRK03918 603 eylelKDAEKELeREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEEL 664
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
153-734 |
2.53e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.35 E-value: 2.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 153 EEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRgedsdyrsqlskknyeliqylDEIQTLTEAneki 232
Cdd:pfam10174 112 ELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARD---------------------ESIKKLLEM---- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 233 eVQNQEMRKNLEESVQEMEKMTDEYnrmKAIVHQTDNVIDQLKKENDHyqlqvqeLTDLLKSKNEeddpiMVAVNAKVEE 312
Cdd:pfam10174 167 -LQSKGLPKKSGEEDWERTRRIAEA---EMQLGHLEVLLDQKEKENIH-------LREELHRRNQ-----LQPDPAKTKA 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 313 WKLILSSKDDEIIEYQQMLHNLREklknaQLDADKSNVMAlqqGIQERDSQIKMLtEQVEQYTKEMEKNtciIEDLKNEL 392
Cdd:pfam10174 231 LQTVIEMKDTKISSLERNIRDLED-----EVQMLKTNGLL---HTEDREEEIKQM-EVYKSHSKFMKNK---IDQLKQEL 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 393 QRnKGASTLSQQTHMKIQST--------LDILKEKTKEAERTAEL--AEADA-----REKDKELVEALKRLKDYESGVYG 457
Cdd:pfam10174 299 SK-KESELLALQTKLETLTNqnsdckqhIEVLKESLTAKEQRAAIlqTEVDAlrlrlEEKESFLNKKTKQLQDLTEEKST 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 458 LEDavvEIKNCKNQIKIRDREIEILTKEINKLELKISDFLDENEALRERV-GLEPKTMIDLTEF-----------RNSKH 525
Cdd:pfam10174 378 LAG---EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVkSLQTDSSNTDTALttleealsekeRIIER 454
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 526 LKQQQYRaENQILLKEIESLEEERLDLKKKIRQMAQERGKRSA--------TSGLTTEDLNLTENISQGDRISERKLD-- 595
Cdd:pfam10174 455 LKEQRER-EDRERLEELESLKKENKDLKEKVSALQPELTEKESslidlkehASSLASSGLKKDSKLKSLEIAVEQKKEec 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 596 ------LLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKG 669
Cdd:pfam10174 534 sklenqLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQM 613
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109255234 670 GETSLIIPSLERLVNAIESKNAEGIFDASL--------HLKAQVDQLTGRNEELRQELRESRKEAINYSQQLA 734
Cdd:pfam10174 614 KEQNKKVANIKHGQQEMKKKGAQLLEEARRrednladnSQQLQLEELMGALEKTRQELDATKARLSSTQQSLA 686
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1630-2392 |
2.71e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1630 VAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFEniKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKEsqclksELQ 1709
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE--RLRREREKAERYQALLKEKREYEGYELLKEKE------ALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1710 AQKEAnSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRELKT 1789
Cdd:TIGR02169 237 RQKEA-IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1790 QVEDLNENLLKLKEALKTSKNRENSLTDNLND-------LNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQ 1862
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdkLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1863 G-----KPLTDNKQSLIEELQRKVKKLENqLEGKVEEVDLKPMKEKNAKEELIrwEEGKKWQAKIEGIRNKLKEKEGEVF 1937
Cdd:TIGR02169 396 KlkreiNELKRELDRLQEELQRLSEELAD-LNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1938 TLTKQLNTLKDLFAKADKEkltLQRKLKTTGMTVDQVLGIRALESEKELEEL--------------------------KK 1991
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE---LAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvgeryataievaagnRL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1992 RNLDLEND------ILYMRAHQA-----LPRDSVvEDLHLQNRYLQEK--------LHALEKQFSKDTYSKPSISGIESD 2052
Cdd:TIGR02169 550 NNVVVEDDavakeaIELLKRRKAgratfLPLNKM-RDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYVFGDTLVVED 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2053 DHCQREQELQKENLKLSSENIE---------------LKFQLEQANKdLPRLKNQVRDLKEMCEFLKKEKAEVQRKLGHV 2117
Cdd:TIGR02169 629 IEAARRLMGKYRMVTLEGELFEksgamtggsraprggILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDEL 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2118 RGS-GRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANI-------------EQENEKLKAELEKLKAH 2183
Cdd:TIGR02169 708 SQElSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkelearieelEEDLHKLEEALNDLEAR 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2184 LGHQLSMHYESKTKGTEKIIAENER----LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLE 2259
Cdd:TIGR02169 788 LSHSRIPEIQAELSKLEEEVSRIEArlreIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2260 gadskswksivvtrmyeTKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEgaeteqGLKR 2339
Cdd:TIGR02169 868 -----------------EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS------ELKA 924
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|...
gi 109255234 2340 ELQVLRLANHQLDKEKAELIHQIEAnkdqsgaestIPDADQLKEKIKDLETQL 2392
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEDEEIPEE----------ELSLEDVQAELQRVEEEI 967
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1645-1961 |
3.38e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 45.90 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1645 KKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQS----QKESQCLKSELQAQKEANSRAPT 1720
Cdd:pfam09731 121 KSEQEKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAeisrEKATDSALQKAEALAEKLKEVIN 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1721 TTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVdrhtRELKTQVEDLNENLlk 1800
Cdd:pfam09731 201 LAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQ----QELVSIFPDIIPVL-- 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1801 lKEALKTSKNRENSLTD----NLNDLNNELQKKQKAYNKilREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQsLIEE 1876
Cdd:pfam09731 275 -KEDNLLSNDDLNSLIAhahrEIDQLSKKLAELKKREEK--HIERALEKQKEELDKLAEELSARLEEVRAADEAQ-LRLE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1877 LQRKV--------KKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKD 1948
Cdd:pfam09731 351 FEREReeiresyeEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEERAGRLLKLNELLANLKGLEKATS 430
|
330
....*....|...
gi 109255234 1949 LFAKADKEKLTLQ 1961
Cdd:pfam09731 431 SHSEVEDENRKAQ 443
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1623-1979 |
3.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1623 LAEMEQTVAEQD---DSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQK 1699
Cdd:TIGR02169 179 LEEVEENIERLDliiDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1700 ESQCLKSELQAQKEansrapttTMRNLVERLKsqlALKEKQQKALSRALLELRAEMtAAAEERIISATSQKEAHLNVQQI 1779
Cdd:TIGR02169 259 EISELEKRLEEIEQ--------LLEELNKKIK---DLGEEEQLRVKEKIGELEAEI-ASLERSIAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1780 VDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIkrlts 1859
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI----- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1860 glqgKPLTDNKQSLIEELQRKVKKLEnQLEGKVEEVDLKPMKEKNAKEELIrwEEGKKWQAKIEGIRNKLKEKEGEVFTL 1939
Cdd:TIGR02169 402 ----NELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKA--LEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 109255234 1940 TKQLNTLKDLFAKADKEkltLQRKLKTTGMTVDQVLGIRA 1979
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRE---LAEAEAQARASEERVRGGRA 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1817-2399 |
3.97e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 3.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1817 DNLNDLNNELQKKQKAYNKILREKEEIDqenDELKRQIKRLTSGLQgkpLTDNKQSLIEELQRKVKKLENQLEgKVEEvd 1896
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIE---ELIKEKEKELEEVLR---EINEISSELPELREELEKLEKEVK-ELEE-- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1897 LKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLfaKADKEKLTLQRKLKTTGMTVDQVLG 1976
Cdd:PRK03918 236 LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL--KEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1977 IRALESEKELEELKKRNLDLENDI-----LYMRAHQALPRDSVVEDLHLQNRYLQEKLHALEKQFSKDTYSKPSISGIES 2051
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEerleeLKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2052 DDHCQREQELQKENLKLSSENIELKFQLEQANKDLPRLK-------------------NQVRDLKEMCEFLKKEKAEVQR 2112
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteehrkELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2113 KLGHVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKasgiLTSEKMANIEQENEKLKAELEKLKAHLghqlsmhy 2192
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKK----YNLEELEKKAEEYEKLKEKLIKLKGEI-------- 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2193 ESKTKGTEKIIAENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLEGADSKswksivvT 2272
Cdd:PRK03918 542 KSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE-------L 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2273 RMYETKLKELETDIAKKNQSITDLKQLVKEATER-EQKVNKYNEDLEQQI--KILKHVPEGAETEQGLKRELQVLRLANH 2349
Cdd:PRK03918 615 EREEKELKKLEEELDKAFEELAETEKRLEELRKElEELEKKYSEEEYEELreEYLELSRELAGLRAELEELEKRREEIKK 694
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 109255234 2350 QLDKEKAELIHQIEANKDQSGAESTIPDADQLKEKIKDLETQLKMSDLEK 2399
Cdd:PRK03918 695 TLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALSK 744
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
36-277 |
5.02e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 5.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 36 EVNELKSEKQENVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMAQQSAGGR-----DT 110
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLakleaEI 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 111 RFLRNEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQ 190
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 191 KETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVHQTDNV 270
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
....*..
gi 109255234 271 IDQLKKE 277
Cdd:TIGR02169 492 LAEAEAQ 498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1671-1863 |
5.87e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1671 QLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRApTTTMRNL---VERLKSQLALKEKQQKALSRA 1747
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAAL-ARRIRALeqeLAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1748 LLELR---AEMTAAAEER--------IISATSQKEAhLNVQQIVDRHTRELKTQVEDLNEN---LLKLKEALKTSKNREN 1813
Cdd:COG4942 99 LEAQKeelAELLRALYRLgrqpplalLLSPEDFLDA-VRRLQYLKYLAPARREQAEELRADlaeLAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 109255234 1814 SLTDNLNDLNNELQKKQKAYNKIL----REKEEIDQENDELKRQIKRLTSGLQG 1863
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLarleKELAELAAELAELQQEAEELEALIAR 231
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
415-1255 |
6.11e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 415 ILKEKTKEAERTAELAEADAREKDKELVEALKRLKDYESgvygLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKIS 494
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL----KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 495 DFLDENEALRERVGL----EPKTMIDLTEFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATS 570
Cdd:pfam02463 240 DLLQELLRDEQEEIEsskqEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 571 GLTTEDLNLTENISQGDRISERKLDLLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKLKELVEENKQLEEG 650
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 651 MKEILQAIKEMQKDPDVKGGETSLIIPSLERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYS 730
Cdd:pfam02463 400 KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 731 QQLAKANLKIDHLEKETSLLRQSEGSNVVFKGIDLPDGIAPSSASIINSQNEYLIHLLQELEnkekKLKNLEDSLEDYNR 810
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENY----KVAISTAVIVEVSA 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 811 KFAVIRHQQSLLYKEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQ 890
Cdd:pfam02463 556 TADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELT 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 891 VNEKSLIRQYTTLVELERQLRKENEKQK-NELLSMEAEVCEKIGCLQRFKEMAIFKIAALQKVVDNSVSLSELELANKQY 969
Cdd:pfam02463 636 KLKESAKAKESGLRKGVSLEEGLAEKSEvKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 970 NELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQAWEQETKLGNESSMDKAKKSITN 1049
Cdd:pfam02463 716 KLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1050 SDIVSISKKITMLEMKELNERQRA-----EHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELAD 1124
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAELLEEeqlliEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1125 SVSKAVSDADRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQLLDYQAQSDEKSLIAKLH 1204
Cdd:pfam02463 876 EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 109255234 1205 QHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALYYARLE 1255
Cdd:pfam02463 956 EEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKK 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1726-2452 |
6.26e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1726 LVERLKSQLALKEKQQKALSRaLLELRAEMTAAaeERIISATSQKEAHLNVQQiVDRHTRELKTQVEDLNENLLKLKEAL 1805
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAER-YKELKAELREL--ELALLVLRLEELREELEE-LQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1806 KTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQgkpltdNKQSLIEELQRKVKKLE 1885
Cdd:TIGR02168 270 EELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE------ELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1886 NQLEGKVEEVDLKPMKEKNAKEELIRWEEG-KKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKD---------------- 1948
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRlEELEEQLETLRSKVAQLELQIASLNNEIERLEArlerledrrerlqqei 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1949 ---LFAKADKEKLTLQRKLKTTGMTVDQVLG-IRALESEKELEELKKRNLDLENDILYMRAHQALPRDSVVEDLHLQNRY 2024
Cdd:TIGR02168 424 eelLKKLEEAELKELQAELEELEEELEELQEeLERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2025 LQEKLHALEKQFSKDTYSKPSIS-GIESDDHCQREQEL----QKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEM 2099
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSGILGVLSeLISVDEGYEAAIEAalggRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2100 CEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLM---KKVVEKVQRENEQLKK----------------ASGILT- 2159
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKKlrpgyrivtldgdlvrPGGVITg 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2160 -SEKMANIEQENEKLKAELEKLKAHLGHQLsmhyesktkgtEKIIAENERLRKELKKETDAAEKLRIAKNNLEILNEKMT 2238
Cdd:TIGR02168 664 gSAKTNSSILERRREIEELEEKIEELEEKI-----------AELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2239 VQLEETGKRLQFAESRGPQLEGADSKSWKSIVVTRmyetklkeletdiAKKNQSITDLKQLVKEATEREQKVNKYNEDLE 2318
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELE-------------ERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2319 QQIKILKHVpEGAETEqgLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTipDADQLKEKIKDLETQLkmSDLE 2398
Cdd:TIGR02168 800 ALREALDEL-RAELTL--LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEELEELI--EELE 872
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 109255234 2399 KQHLKEEIKKLkkelenfdpSFFEEIEDLKYNYKEEVKKNILLEEKVKKLSEQL 2452
Cdd:TIGR02168 873 SELEALLNERA---------SLEEALALLRSELEELSEELRELESKRSELRREL 917
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1733-2400 |
6.47e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1733 QLALKEKQQKALSRALLELRAE----MTAAAEERIISATSQKE------AHLNVQQIVDRHTRELKTQVEDLNENLLKLK 1802
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLrsqlLTLCTPCMPDTYHERKQvlekelKHLREALQQTQQSHAYLTQKREAQEEQLKKQ 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1803 EALKTSKNRENSLTDNLNDLNN-----ELQKKQKAYNKILREKEEIDQE----NDELKRQIKRLTSGLQGKPLTDNKQSL 1873
Cdd:TIGR00618 260 QLLKQLRARIEELRAQEAVLEEtqeriNRARKAAPLAAHIKAVTQIEQQaqriHTELQSKMRSRAKLLMKRAAHVKQQSS 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1874 IEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLK----------EKEGEVFTLTKQL 1943
Cdd:TIGR00618 340 IEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQslckeldilqREQATIDTRTSAF 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1944 NTLKDLFAKADKE-----KLTLQRKLKTTGMTVDQVLGIRALESEKELEELKKRNLDLENDILYMRAHQALPRDSVVEDL 2018
Cdd:TIGR00618 420 RDLQGQLAHAKKQqelqqRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2019 HLQNRYLQEKLHALEKQFSKDTYSKPSISGIES--DDHCQREQELQKENLKLSSEN---IELKFQLEQANKDLPRLKNQV 2093
Cdd:TIGR00618 500 QEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRgeQTYAQLETSEEDVYHQLTSERkqrASLKEQMQEIQQSFSILTQCD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2094 RDLKEMCEFLKKEKAEVQrklghvrgsgrsgktiPELEKTIGLMKKVVEKVQRENEQLKKASGIL-TSEKMANIEQENEK 2172
Cdd:TIGR00618 580 NRSKEDIPNLQNITVRLQ----------------DLTEKLSEAEDMLACEQHALLRKLQPEQDLQdVRLHLQQCSQELAL 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2173 LKAELEKLKAHLGHQLSMHYESKTKGTEKIIAEneRLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGK-RLQFA 2251
Cdd:TIGR00618 644 KLTALHALQLTLTQERVREHALSIRVLPKELLA--SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEyDREFN 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2252 E------SRGPQLEGADSKSWKSI-VVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKIL 2324
Cdd:TIGR00618 722 EienassSLGSDLAAREDALNQSLkELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLL 801
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 2325 KHVPegAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTI--PDADQLKEKIKDLETQLKMSDLEKQ 2400
Cdd:TIGR00618 802 KTLE--AEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQllKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
970-1310 |
6.59e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 970 NELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEiTKEKLHTIEQAWEQEtklgnessMDKakksitN 1049
Cdd:pfam17380 268 NEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVE-RRRKLEEAEKARQAE--------MDR------Q 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1050 SDIVSISKKITMLEMKELnERQRAEHCQKMYEHLRtslkqMEERNFELEtKFAELTKINLDAQKVEQMLRDELADSVSKA 1129
Cdd:pfam17380 333 AAIYAEQERMAMEREREL-ERIRQEERKRELERIR-----QEEIAMEIS-RMRELERLQMERQQKNERVRQELEAARKVK 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1130 VSDADRQRILELEKNEMEL------KVEVSKLREISDIARRQVEILNAQQQSRDKEVESLRMQlldyQAQSDEKSLIAKL 1203
Cdd:pfam17380 406 ILEEERQRKIQQQKVEMEQiraeqeEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ----EEERKRKKLELEK 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1204 HQHNVSLQLSEATALGKLESITSKLQKMEAYNLR--LEQKLDEKEQALYYArlEGRNRAKHLRQTIQSL--RRQFSGALP 1279
Cdd:pfam17380 482 EKRDRKRAEEQRRKILEKELEERKQAMIEEERKRklLEKEMEERQKAIYEE--ERRREAEEERRKQQEMeeRRRIQEQMR 559
|
330 340 350
....*....|....*....|....*....|.
gi 109255234 1280 LAQQEKFSKTMIQLQNDKLKIMQEMKNSQQE 1310
Cdd:pfam17380 560 KATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
106-373 |
1.29e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 106 GGRDTRFLRNEICQLEKQLEQKDRELEDMEKELEK-EKKVNEQLALRNE------EAENENSKLRRENKRLKKKNEQLCQ 178
Cdd:TIGR02169 658 GSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSlQSELRRIENRLDElsqelsDASRKIGEIEKEIEQLEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 179 DIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNYELIQYLDEIQTL--TEANEKIEVQNQEMRKnLEESVQEMEKMTDE 256
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSK-LEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 257 YNRMKAIVHQTDNVIDQLKKEndhyqlqVQELTDLLKSKNEEddpimvaVNAKVEEWKLILSSKDDEIIEYQQMLHNLRE 336
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQE-------LQEQRIDLKEQIKS-------IEKEIENLNGKKEELEEELEELEAALRDLES 882
|
250 260 270
....*....|....*....|....*....|....*....
gi 109255234 337 KLKNAQLDAD--KSNVMALQQGIQERDSQIKMLTEQVEQ 373
Cdd:TIGR02169 883 RLGDLKKERDelEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1626-1846 |
1.63e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1626 MEQTVAEQDDSLSSLLVKLKKVSQDLER-QREITELKVK-------EFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQS 1697
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEaEAALEEFRQKnglvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1698 QKEsqcLKSELQAQKEANSRAPTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMtAAAEERIISATSQKEAHLNVQ 1777
Cdd:COG3206 246 RAQ---LGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI-AALRAQLQQEAQRILASLEAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 109255234 1778 QivdrhtRELKTQVEDLNENLLKLKEALKTSKNREnsltDNLNDLNNELQKKQKAYNKILREKEEIDQE 1846
Cdd:COG3206 322 L------EALQAREASLQAQLAQLEARLAELPELE----AELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
130-176 |
1.78e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 43.28 E-value: 1.78e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 109255234 130 ELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQL 176
Cdd:PRK03992 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKL 48
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
703-1581 |
2.39e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 703 AQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRqsegsnvvfkgidlpdgiapssaSIINSQNE 782
Cdd:TIGR02168 225 LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR-----------------------LEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 783 YLIHLLQELENKEKKLKNLEDSLEDYNRKFAVIRHQQsllyKEYLSEKETWKTESKTIKEEKRKLEDQVQQDAIKVKEYN 862
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQL----EELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 863 NLLNALQMDSDEMKKILAEnsrkitvlqvneksLIRQYTTLVELERQLRKENEKQKNELLSMEAEvcekigclqrfkema 942
Cdd:TIGR02168 358 AELEELEAELEELESRLEE--------------LEEQLETLRSKVAQLELQIASLNNEIERLEAR--------------- 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 943 ifkIAALQKVVDNSVSLSELELANKQYNELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLH 1022
Cdd:TIGR02168 409 ---LERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1023 TIEQAWEQ-ETKLGNESSMDKAKKSITN------------SDIVSISKK------------ITMLEMKELNERQRAEHCQ 1077
Cdd:TIGR02168 486 QLQARLDSlERLQENLEGFSEGVKALLKnqsglsgilgvlSELISVDEGyeaaieaalggrLQAVVVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1078 KMYEHLRTSlkqmeernfeletkFAELTKINLDAQKVEQMLRDELADSVskavsdadRQRILELEKNEMELKVEVSKLRE 1157
Cdd:TIGR02168 566 KQNELGRVT--------------FLPLDSIKGTEIQGNDREILKNIEGF--------LGVAKDLVKFDPKLRKALSYLLG 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1158 ISDIARRqveILNAQQQSRDKEVESLRMQLLDYQAQSDekSLIAKLHQHNVSLQLSEATALGKLEsitSKLQKMEAYNLR 1237
Cdd:TIGR02168 624 GVLVVDD---LDNALELAKKLRPGYRIVTLDGDLVRPG--GVITGGSAKTNSSILERRREIEELE---EKIEELEEKIAE 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1238 LEQKLDEKEQALYyarlEGRNRAKHLRQTIQSLRRQFSGALplaqqekfsktmIQLQNDKLKIMQEMKNSQQEHRNMENK 1317
Cdd:TIGR02168 696 LEKALAELRKELE----ELEEELEQLRKELEELSRQISALR------------KDLARLEAEVEQLEERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1318 TLEMELKLKGLEELISTLKDTKGaqkvinwhmKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQqn 1397
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEA---------EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES-- 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1398 kfHEERQMAWDQREVDLERQLDifdrqqneilNAAQKFEEATGSIpdpslplpNQLEIALRKIKENIRIILETRAtckSL 1477
Cdd:TIGR02168 829 --LERRIAATERRLEDLEEQIE----------ELSEDIESLAAEI--------EELEELIEELESELEALLNERA---SL 885
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1478 EEKLKEKESALRLAEQNILSRDKVINELRlrlpatAEREKLIAELGRKEMEpkshhtLKIAHQTIANMQARLNQK----E 1553
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELR------RELEELREKLAQLELR------LEGLEVRIDNLQERLSEEysltL 953
|
890 900
....*....|....*....|....*...
gi 109255234 1554 EVLKKYQRLLEKAREEQREIVKKHEEDL 1581
Cdd:TIGR02168 954 EEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
416-640 |
2.86e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 416 LKEKTKEAERTAELAEADAREKDKELVEALKRLKDY--ESGVYGLEDavveikncknQIKIRDREIEILTKEINKLELKI 493
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFrqKNGLVDLSE----------EAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 494 SDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQQYRAENQI--LLK-------EIESLEEERLDLKKKIRQMAQE-- 562
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELaeLSArytpnhpDVIALRAQIAALRAQLQQEAQRil 315
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 563 RGKRSATSGLTTEDLNLTENISQgdrISERkldllsLKNMSEAQskneflsRELIEKERDLERSRTVIAKFQNKLKEL 640
Cdd:COG3206 316 ASLEAELEALQAREASLQAQLAQ---LEAR------LAELPELE-------AELRRLEREVEVARELYESLLQRLEEA 377
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1446-1895 |
2.98e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 2.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1446 SLPLPNQLEIALRKIKEN-----IRIILETRATCKSLEEKlkekesalRLAEQNILSRDKVINELrlrlpataerEKLIA 1520
Cdd:PRK10929 21 TAPDEKQITQELEQAKAAktpaqAEIVEALQSALNWLEER--------KGSLERAKQYQQVIDNF----------PKLSA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1521 ELgRKEMEPKSHHTLKI-AHQTIANmqarLNQkeEVLKKYQRLLEKAREEQreivkkHEEDlhilhhRLELQADsSLNKF 1599
Cdd:PRK10929 83 EL-RQQLNNERDEPRSVpPNMSTDA----LEQ--EILQVSSQLLEKSRQAQ------QEQD------RAREISD-SLSQL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1600 KQTAWDLMKQsptpvptnkhfirLAEMEQTVAEQDDSLSSLlvklkKVSQDLERQREITELKVKEFENIKLQLQENHEDE 1679
Cdd:PRK10929 143 PQQQTEARRQ-------------LNEIERRLQTLGTPNTPL-----AQAQLTALQAESAALKALVDELELAQLSANNRQE 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1680 VKKVKAEVEDLKYllDQSQKESQCLKSEL--QAQKEANSRAPTTTM-----RNLVERLKSQLalkeKQQKALSRALLELR 1752
Cdd:PRK10929 205 LARLRSELAKKRS--QQLDAYLQALRNQLnsQRQREAERALESTELlaeqsGDLPKSIVAQF----KINRELSQALNQQA 278
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1753 AEMTA-AAEERiiSATSQKeahLNVQQIVDRhTRE--------------LKTQVEDLNE---------NLLKLK-EALKT 1807
Cdd:PRK10929 279 QRMDLiASQQR--QAASQT---LQVRQALNT-LREqsqwlgvsnalgeaLRAQVARLPEmpkpqqldtEMAQLRvQRLRY 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1808 SK--NRENSLTDNLNDLNNELQKKQkayNKILrekeeidqeNDELKRQIKRLTSGLQGkpltdnKQSLIEELQrKVKKLE 1885
Cdd:PRK10929 353 EDllNKQPQLRQIRQADGQPLTAEQ---NRIL---------DAQLRTQRELLNSLLSG------GDTLILELT-KLKVAN 413
|
490
....*....|
gi 109255234 1886 NQLEGKVEEV 1895
Cdd:PRK10929 414 SQLEDALKEV 423
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
35-200 |
3.08e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 35 VEVNELKSEkqenVIHLFRITQSLMKMKAQEVELALEEVEKAGEEQAKFENQLKTKVMKLENELEMaqqsaggrdtrfLR 114
Cdd:COG2433 363 VDRDEVKAR----VIRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------LE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 115 NEICQLEKQLEQKDRELEDMEKELEKEKKVNEQLALRNEEAenenSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETL 194
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARSEERREIRKDREI----SRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
....*..
gi 109255234 195 -LSRRGE 200
Cdd:COG2433 503 kLEHSGE 509
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1756-1964 |
3.46e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1756 TAAAEERIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNK 1835
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1836 ILREKEEIDQENDELK-----RQIKRLTSGLQG-KPLTDNKQSLIEELQRKVKKLENQLEGKVEEVDlkpmKEKNAKEEL 1909
Cdd:COG3883 91 RARALYRSGGSVSYLDvllgsESFSDFLDRLSAlSKIADADADLLEELKADKAELEAKKAELEAKLA----ELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 109255234 1910 irweegkkwQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKLTLQRKL 1964
Cdd:COG3883 167 ---------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAA 212
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1628-1896 |
3.75e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1628 QTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKefeniklqLQENHEDEVKKV-KAEVEDLKYLLDQSQKESQCLKS 1706
Cdd:PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIK--------TYNKNIEEQRKKnGENIARKQNKYDELVEEAKTIKA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1707 ELqaqkeansraptttmrnlvERLKSQLALKEKQQKALSRALLELRAEMTAAAEERiisATSQKEAHLN---------VQ 1777
Cdd:PHA02562 235 EI-------------------EELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI---EQFQKVIKMYekggvcptcTQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1778 QIVDrhTRELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRL 1857
Cdd:PHA02562 293 QISE--GPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370
|
250 260 270
....*....|....*....|....*....|....*....
gi 109255234 1858 TSGlqgkplTDNKQSLIEELQRKVKKLENQLEGKVEEVD 1896
Cdd:PHA02562 371 QAE------FVDNAEELAKLQDELDKIVKTKSELVKEKY 403
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1622-1865 |
4.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1622 RLAEMEQTVAEQDDSLSSLLVKLKKVSQDL----ERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQS 1697
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELdalqERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1698 QKESQCLKSELQAQKEANSRApTTTMRNLVERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIiSATSQKEAHLNVQ 1777
Cdd:COG4913 691 EEQLEELEAELEELEEELDEL-KGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF-AAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1778 QIVDRHTRELKTQVEDLNENLLKL-KEALKTSKNRENSLTDNLNDL-----------NNELQKKQKAYNKILREKE---- 1841
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAmRAFNREWPAETADLDADLESLpeylalldrleEDGLPEYEERFKELLNENSiefv 848
|
250 260
....*....|....*....|....*....
gi 109255234 1842 -----EIDQENDELKRQIKRLTSGLQGKP 1865
Cdd:COG4913 849 adllsKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-394 |
4.40e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 4.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 149 ALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQIDSQKETLLSRRGEDSDYRSQLSKKNyeliqylDEIQTLTEA 228
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 229 NEKIEVQNQEMRKNLEESVQEMEKMtDEYNRMKAIVHQTDnvidqlkkendhyQLQVQELTDLLKSKNEEDDPIMVAVNA 308
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRL-GRQPPLALLLSPED-------------FLDAVRRLQYLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 309 KVEEwkliLSSKDDEIIEYQQMLHNLREKLKNAQLdadksnvmALQQGIQERDSQIKMLTEQVEQYTKEMEKNTCIIEDL 388
Cdd:COG4942 158 DLAE----LAALRAELEAERAELEALLAELEEERA--------ALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
....*.
gi 109255234 389 KNELQR 394
Cdd:COG4942 226 EALIAR 231
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1002-1569 |
4.50e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 4.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1002 SLKEQVE------SINKELEITK--EKLHTIEQAWEQETKLGNESSMDKAKKSITNSDIVSISKKITMLEMKELNERQRA 1073
Cdd:COG1196 204 PLERQAEkaeryrELKEELKELEaeLLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1074 EHCQKMYEHLRTSLKQMEERNFELETKFAELTKINLDAQKVEQMLRDELADsvskavsdaDRQRILELEKNEMELKVEVS 1153
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEE---------LEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1154 KLREISDIARRQVEILNAQQQSRDKEVESLRMQLLDY-QAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKME 1232
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1233 AYNLRLEQKLDE-KEqalyyARLEGRNRAKHLRQTIQSLRRQFSGALPLAQQEKFSKTMIQLQNDKLKIMQEmknsQQEH 1311
Cdd:COG1196 435 EEEEEEEEALEEaAE-----EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA----DYEG 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1312 RNMENKTLEMELKLKGLEELISTL------------------------KDTKGAQKVINWHMKIEELRLQELKLNRElvk 1367
Cdd:COG1196 506 FLEGVKAALLLAGLRGLAGAVAVLigveaayeaaleaalaaalqnivvEDDEVAAAAIEYLKAAKAGRATFLPLDKI--- 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1368 DKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSIPDPSl 1447
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGS- 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1448 plpnqleIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREKLIAELGRKEM 1527
Cdd:COG1196 662 -------LTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 109255234 1528 EPKSHHTLKIAHQTIANMQARL--NQKEEVLKKYQRLLEKAREE 1569
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELpePPDLEELERELERLEREIEA 778
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1838-1979 |
4.96e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1838 REKEEIDQENDELKRQIKRLtsglqgkpltdnkQSLIEELQRKVKKLENQLEGKVEEVD-----LKPMKeKNAKEELIRW 1912
Cdd:COG2433 399 REKEHEERELTEEEEEIRRL-------------EEQVERLEAEVEELEAELEEKDERIErlereLSEAR-SEERREIRKD 464
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 109255234 1913 EEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKLTLQRKL----KTTGMTVDQVLGIRA 1979
Cdd:COG2433 465 REISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPVKVVekftKEAIRRLEEEYGLKE 535
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1292-1762 |
5.27e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1292 QLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKdtkgaqkvinwhmKIEELRLQELKLNRELVKDKEE 1371
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-------------ELKEKAEEYIKLSEFYEEYLDE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1372 IKYLNNIISEYERTISSLEEEIVQQNKfHEERQMAWDQREVDLERQLDIFDRQQNEILNAAQKFEEATGSipdpslplpn 1451
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---------- 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1452 QLEIALRKIKENIRIILETRATCKSLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAEREKLIAELGRKEMEPKS 1531
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEY 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1532 HHTLKiahqTIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHE--EDLHILHHRLElqaDSSLNKFKQTAWDLMKQ 1609
Cdd:PRK03918 458 TAELK----RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLK---KYNLEELEKKAEEYEKL 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1610 SPTPVPTNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDL-ERQREITELKVKEFENIKLQLQE------------NH 1676
Cdd:PRK03918 531 KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELaELLKELEELGFESVEELEERLKElepfyneylelkDA 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1677 EDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKE--------------ANSRAPTTTMRNLVERLKSQLALKEKQQK 1742
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKeleelekkyseeeyEELREEYLELSRELAGLRAELEELEKRRE 690
|
490 500
....*....|....*....|
gi 109255234 1743 ALSRALLELRAEMTAAAEER 1762
Cdd:PRK03918 691 EIKKTLEKLKEELEEREKAK 710
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1784-2409 |
5.65e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1784 TRELKTQVEDLN------ENLLKLKEALKTSKNRENSLtdNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRL 1857
Cdd:COG1196 195 LGELERQLEPLErqaekaERYRELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1858 TSGLQgkpltdNKQSLIEELQRKVKKLENQLEGKVEEVDLKPMKEKNAKEELIRWE-EGKKWQAKIEGIRNKLKEKEGEV 1936
Cdd:COG1196 273 RLELE------ELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEeELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1937 FTLTKQLNTLKDLFAKADKEKLTLQRKLkttgmtvdqvlgiraLESEKELEELKKRNLDLENDILYMRAHQALPRDSVVE 2016
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAEL---------------AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2017 DLHLQNRYLQEKLHALEKQFSKDtyskpsisgIESDDHCQREQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVRDL 2096
Cdd:COG1196 412 LLERLERLEEELEELEEALAELE---------EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2097 KEMCEFLKKEKAEVQRKLGHVRGSGRSGKTIPELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQENEKLKAE 2176
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2177 LEKLKAHLGHQlsmhyesktkgtekiiAENERLRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQfAESRGP 2256
Cdd:COG1196 563 IEYLKAAKAGR----------------ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG-DTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2257 QLEGADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKyNEDLEQQIKILKHVPEGAETEQG 2336
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL-EELAERLAEEELELEEALLAEEE 704
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109255234 2337 LKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTIPDADQLKEKIKDLETQLKMSDLEKQhlkeeIKKL 2409
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE-----LERL 772
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1652-2466 |
6.69e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 6.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1652 ERQREITELKVKEFENIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNLVERLK 1731
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1732 SQLALKEKQQKALSRALLELRAEMTAAAEErIISATSQKEAHLNVQQIVDRHTRELKTQVEDLNENLLKLKEALKTSKNR 1811
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKL-QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKK 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1812 ENSLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKVKKLENQLEGK 1891
Cdd:pfam02463 333 EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1892 VEEVDLKPMKEKNAKEELIRWEEGKKWQAKIEGIRNKLKEKEGEVFTLTKQLNTLKDLFAKADKEKLTLQRKLKTTGMTV 1971
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1972 DQVLGIRALESEKELEELKKRNLD---LENDILYMRAHQALPRDSVVEDLHLQNRYLQEKLHALEKQFSKDTYSKPSISG 2048
Cdd:pfam02463 493 QKLEERSQKESKARSGLKVLLALIkdgVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2049 IEsDDHCQREQELQKENLKLSSENIELKFQLEQANKDLPRLKNQVRDLKEMCEFLKKEKAEVQRKLGhvrgsGRSGKTIP 2128
Cdd:pfam02463 573 LP-LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLK-----ESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2129 ELEKTIGLMKKVVEKVQRENEQLKKASGILTSEKMANIEQENEKLKAELEKLKAHLGHQLSMHYESKTKGTEKIIAENER 2208
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2209 LRKELKKETDAAEKLRIAKNNLEILNEKMTVQLEETGKRLQFAESRGPQLEGADSKSWKSIVVTRMYETKLKELETDIAK 2288
Cdd:pfam02463 727 VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRAL 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2289 KNQSITDLKQLVKEATEREQKVNKYNEDLEQQIKILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQ 2368
Cdd:pfam02463 807 EEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKD 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 2369 SGAESTipDADQLKEKIKDLETQLKMSDLEKQHLKEEIKKLKKELENFDPSFFEEIEDLKYNYKEEVKKNILLEEKVKKL 2448
Cdd:pfam02463 887 ELESKE--EKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKR 964
|
810
....*....|....*....
gi 109255234 2449 SEQLGVELTSPVA-ASEEF 2466
Cdd:pfam02463 965 LLLAKEELGKVNLmAIEEF 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1293-1700 |
7.08e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 7.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1293 LQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDtkgaqkvinwhmKIEELRLQELKLNRELVKDKEEI 1372
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE------------RLEELEEDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1373 KYLNNIISEYERTISSLEEEIvqqnkfheerqmawdqreVDLERQLDifDRQQNEILNAAQKFEEATGSIpdpslplpnq 1452
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEAL------------------NDLEARLS--HSRIPEIQAELSKLEEEVSRI---------- 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1453 leialRKIKENIRIILETRATCK-SLEEKLKEKESALRLAEQNILSRDKVINELRLRLPATAERekliaelgrkemepks 1531
Cdd:TIGR02169 811 -----EARLREIEQKLNRLTLEKeYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE---------------- 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1532 hhtlkiahqtIANMQARLNQKEEVLKKYQRLLEKAREEQREIVKKHEEdlhilhhrlelqADSSLNKFKQTAWDLMKQSP 1611
Cdd:TIGR02169 870 ----------LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE------------LEAQIEKKRKRLSELKAKLE 927
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1612 TPVPTNKHFIRLAEMEQTVAEQDDSLSSLLVKLKKVSQDLERQREITELKVKEFENIKLQLQEnHEDEVKKVKAEVEDLK 1691
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE-LKEKRAKLEEERKAIL 1006
|
....*....
gi 109255234 1692 YLLDQSQKE 1700
Cdd:TIGR02169 1007 ERIEEYEKK 1015
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1782-1933 |
7.92e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1782 RHTRELKTQVEDLNENLLKLKEALKtskNRENSLtdnlndlnneLQKKQKAYNKILRE-KEEIDQENDELKRQIKRLTSG 1860
Cdd:PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQ---EEEDKL----------LEEAEKEAQQAIKEaKKEADEIIKELRQLQKGGYAS 603
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 109255234 1861 LQGKPLTDNKQSLIEELQRKVKKL----ENQLEGKV-EEVDLKPMkekNAKEELIRWEEGKKWQAKIEGIRNKLKEKE 1933
Cdd:PRK00409 604 VKAHELIEARKRLNKANEKKEKKKkkqkEKQEELKVgDEVKYLSL---GQKGEVLSIPDDKEAIVQAGIMKMKVPLSD 678
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1731-1894 |
8.26e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1731 KSQLALKEKQQKALSRALLELRAEMTAAAEERIiSATSQKEAHLNVQQI---------VDRHTRELKTQVEDLNENLLKL 1801
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELD-ALQERREALQRLAEYswdeidvasAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1802 KEalktsknrensLTDNLNDLNNELQKKQKAYNKILREKEEIDQENDELKRQIKRLTSGLQGKP---------------- 1865
Cdd:COG4913 688 AA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEdlarlelralleerfa 756
|
170 180 190
....*....|....*....|....*....|....*....
gi 109255234 1866 ----------LTDNKQSLIEELQRKVKKLENQLEGKVEE 1894
Cdd:COG4913 757 aalgdavereLRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
874-1402 |
8.61e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 874 EMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRK------ENEKQKNELLSMEAEVCEKIGCLQRFKEMAIFKIA 947
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeeieELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 948 ALQKVVDNsvsLSELELANKQYNELTAKYRDILQKDNMLVQRTSNLEHLECENISLKEQVESINKELEITKEKLHTIEQA 1027
Cdd:PRK03918 277 ELEEKVKE---LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1028 WEQETKLGNESSMDKAKKsitnSDIVSISKKITMLEMKELNE-----RQRAEHCQKMYEHLRTSLKQMEERNFELETKFA 1102
Cdd:PRK03918 354 LEELEERHELYEEAKAKK----EELERLKKRLTGLTPEKLEKeleelEKAKEEIEEEISKITARIGELKKEIKELKKAIE 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1103 ELTKIN----LDAQKVEQMLRDELADSVSKAVSDAdRQRILELEKNEMELKVEVSKLREISDIARRQVEILNAQQQSRDK 1178
Cdd:PRK03918 430 ELKKAKgkcpVCGRELTEEHRKELLEEYTAELKRI-EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1179 EVESLRMQLLDYQAQSDEKSLIAKLHQHNVSLQLSEATALGKLESITSKLQKMEAYNLRLEQKLDEKEQALyyaRLEGRN 1258
Cdd:PRK03918 509 EEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL---EELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1259 RAKHLRQTIQSLrrqfsgalplaqqEKFSKTMIQLQNDKLKIMQEMKNSQQEHRNMENKTLEMELKLKGLEELISTLKDT 1338
Cdd:PRK03918 586 SVEELEERLKEL-------------EPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 109255234 1339 kgaqKVINWHMKIEELRLQELKLNRELVKDKEEIKYLNNIISEYERTISSLEEEIVQQNKFHEE 1402
Cdd:PRK03918 653 ----EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKE 712
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1096-1192 |
8.66e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.10 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 1096 ELETKFAELT-KINLDAQKVEQmLRDELAD-SVSKAVSDADRQRIL-----------ELEKNEMELKVEVSKLREISDIA 1162
Cdd:PRK09039 57 RLNSQIAELAdLLSLERQGNQD-LQDSVANlRASLSAAEAERSRLQallaelagagaAAEGRAGELAQELDSEKQVSARA 135
|
90 100 110
....*....|....*....|....*....|
gi 109255234 1163 RRQVEILNAQqqsrdkeVESLRMQLLDYQA 1192
Cdd:PRK09039 136 LAQVELLNQQ-------IAALRRQLAALEA 158
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
129-989 |
9.61e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 129 RELEDMEKELEKEKKVNEQLALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQidsQKETLLSRRGEDSDYRSQL 208
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE---EYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 209 SKKNYELIQYLDEIQTLTEANEKIEVQNQEMRKNLEESVQEMEKMTDEYNRMKAIVhQTDNVIDQLKKENDHYQLQVQEL 288
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEEL-KSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 289 TDLLKSKNEEDDPIMVAVNAKVEEWKLILSSKDDEIIEYQQMLHNLREKLKNAQLDADKSNVMALQQGIQERDSQIKMLT 368
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 369 EQVEQYTKEMEKNTCIIEDLKNELQR------NKGASTLSQQTHMKIQSTLDILKEKTKEAERTAELAEADAREKDKELV 442
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEeleileEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 443 EALKRLK----DYESGVYGLEDAVVEIKNCKNQIKIRDREIEILTKEINKLELKISDFLDENEALRERVGLEPKTMIDLT 518
Cdd:pfam02463 482 LQEQLELllsrQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 519 EFRNSKHLKQQQYRAENQILLKEIESLEEERLDLKKKIRQMAQERGKRSATSGLTTEDLNLTENISQGDRISERKLDLLS 598
Cdd:pfam02463 562 ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 599 LKNMSEAQSKNEFLSRELIEKERDlerSRTVIAKFQNKLKELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETSLIIPS 678
Cdd:pfam02463 642 KAKESGLRKGVSLEEGLAEKSEVK---ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 679 LERLVNAIESKNAEGIFDASLHLKAQVDQLTGRNEELRQELRESRKEAINYSQQLAKANLKIDHLEKETSLLRQSEGSNV 758
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 759 VFKgidlpdgiapsSASIINSQNEYLIHLLQELENKEKKLKNLEDSLEDYNRK--FAVIRHQQSLLYKEYLSEKETWKTE 836
Cdd:pfam02463 799 QEE-----------ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALelKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 109255234 837 SKTIKEEKRKLEDQVQQDAIKVKEYNNLLNALQMDSDEMKKILAENSRKITVLQVNEKSLIRQYTTLVELERQLRKENEK 916
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 109255234 917 QKNELLSMEAEVCEKIGCLQRFKEMAIFKIAALQKVVDNSVSLSELELankQYNELTAKYRDILQKDNMLVQR 989
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDEL---EKERLEEEKKKLIRAIIEETCQ 1017
|
|
|