NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|527122092|ref|NP_110425|]
View 

RCC1-like G exchanging factor-like protein isoform 1 [Homo sapiens]

Protein Classification

ATS1 family protein( domain architecture ID 13421879)

ATS1 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 178-455 2.41e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 137.03  E-value: 2.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 178 QVSCGRAHSLVLTDREGVFSMGNNSYGQCGrkvveNEIYSESHRVHRMQDFDGqVVQVACGQDHSLFLTDKGEVYSCGWG 257
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLG-----DGTTTDRSTPVRVPGLSN-VVAVAAGGDHTCALKADGTVWCWGNN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 258 ADGQTGLGHYNITSSPTKLGGdlaGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASvTDSTQVNVPRcLHFSGVGK 337
Cdd:COG5184   76 SYGQLGDGTTTDRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD-GTTTNRLTPV-QVDAGLSG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 338 VRQAACGG-TGCAVLNGeGHVFVWG---YGILGKGpNLVESAVPEMIPptlfGLTEfnpeiqVSRIRCGLSHFAALTNKG 413
Cdd:COG5184  151 VVAIAAGGyHTCALKSD-GTVWCWGansYGQLGDG-TTTDRPTPVQVG----GLSG------VVAVAAGGDHSCALKSDG 218

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 527122092 414 ELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDH 455
Cdd:COG5184  219 TVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGVVAIAAGGSH 260
ATS1 super family cl34932
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 55-274 4.29e-15

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


The actual alignment was detected with superfamily member COG5184:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 76.17  E-value: 4.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092  55 AARAD-RVFVWGFSFSGALGVPSFVVpssgpgpragarprrriQPVPYRLELDQKISSAACGYGFT--LLSSKTadvtkV 131
Cdd:COG5184  163 ALKSDgTVWCWGANSYGQLGDGTTTD-----------------RPTPVQVGGLSGVVAVAAGGDHScaLKSDGT-----V 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 132 WGMGLNKDSQLGfhrsrkdkTRGYEYVLEPSPVSLPldrpqeTRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRKvv 211
Cdd:COG5184  221 WCWGSNSSGQLG--------DGTTTDRATPVQVAGL------TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG-- 284

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 527122092 212 eneiySESHRVHRMQ-DFDGQVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPT 274
Cdd:COG5184  285 -----TTTDRSTPVKvPGLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 178-455 2.41e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 137.03  E-value: 2.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 178 QVSCGRAHSLVLTDREGVFSMGNNSYGQCGrkvveNEIYSESHRVHRMQDFDGqVVQVACGQDHSLFLTDKGEVYSCGWG 257
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLG-----DGTTTDRSTPVRVPGLSN-VVAVAAGGDHTCALKADGTVWCWGNN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 258 ADGQTGLGHYNITSSPTKLGGdlaGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASvTDSTQVNVPRcLHFSGVGK 337
Cdd:COG5184   76 SYGQLGDGTTTDRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD-GTTTNRLTPV-QVDAGLSG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 338 VRQAACGG-TGCAVLNGeGHVFVWG---YGILGKGpNLVESAVPEMIPptlfGLTEfnpeiqVSRIRCGLSHFAALTNKG 413
Cdd:COG5184  151 VVAIAAGGyHTCALKSD-GTVWCWGansYGQLGDG-TTTDRPTPVQVG----GLSG------VVAVAAGGDHSCALKSDG 218

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 527122092 414 ELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDH 455
Cdd:COG5184  219 TVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGVVAIAAGGSH 260
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 55-274 4.29e-15

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 76.17  E-value: 4.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092  55 AARAD-RVFVWGFSFSGALGVPSFVVpssgpgpragarprrriQPVPYRLELDQKISSAACGYGFT--LLSSKTadvtkV 131
Cdd:COG5184  163 ALKSDgTVWCWGANSYGQLGDGTTTD-----------------RPTPVQVGGLSGVVAVAAGGDHScaLKSDGT-----V 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 132 WGMGLNKDSQLGfhrsrkdkTRGYEYVLEPSPVSLPldrpqeTRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRKvv 211
Cdd:COG5184  221 WCWGSNSSGQLG--------DGTTTDRATPVQVAGL------TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG-- 284

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 527122092 212 eneiySESHRVHRMQ-DFDGQVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPT 274
Cdd:COG5184  285 -----TTTDRSTPVKvPGLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
232-261 1.04e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 47.80  E-value: 1.04e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 527122092  232 VVQVACGQDHSLFLTDKGEVYSCGWGADGQ 261
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
130-189 1.86e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 36.34  E-value: 1.86e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092  130 KVWGMGLNKDSQLGfHRSRKDktrgyeyVLEPSPVSLPLDRpqetRVLQVSCGRAHSLVL 189
Cdd:pfam00415   3 RVYTWGRNDYGQLG-LGTTEN-------VLVPQKVEGLSGN----KVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 178-455 2.41e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 137.03  E-value: 2.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 178 QVSCGRAHSLVLTDREGVFSMGNNSYGQCGrkvveNEIYSESHRVHRMQDFDGqVVQVACGQDHSLFLTDKGEVYSCGWG 257
Cdd:COG5184    2 QVAAGGSHSCALKSDGTVWCWGDNSYGQLG-----DGTTTDRSTPVRVPGLSN-VVAVAAGGDHTCALKADGTVWCWGNN 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 258 ADGQTGLGHYNITSSPTKLGGdlaGVNVIQVATYGDCCLAVSADGGLFGWGNSEYLQLASvTDSTQVNVPRcLHFSGVGK 337
Cdd:COG5184   76 SYGQLGDGTTTDRTTPVKVPG---LTGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD-GTTTNRLTPV-QVDAGLSG 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 338 VRQAACGG-TGCAVLNGeGHVFVWG---YGILGKGpNLVESAVPEMIPptlfGLTEfnpeiqVSRIRCGLSHFAALTNKG 413
Cdd:COG5184  151 VVAIAAGGyHTCALKSD-GTVWCWGansYGQLGDG-TTTDRPTPVQVG----GLSG------VVAVAAGGDHSCALKSDG 218

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 527122092 414 ELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDH 455
Cdd:COG5184  219 TVWCWGSNSSGQLGDGTTTDRATPVQVAGLTGVVAIAAGGSH 260
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 55-437 3.58e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 136.26  E-value: 3.58e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092  55 AARAD-RVFVWGFSFSGALGVPSfvvpssgpgpragarprRRIQPVPYRLELDQKISSAACGYGFT--LLSSKTadvtkV 131
Cdd:COG5184   12 ALKSDgTVWCWGDNSYGQLGDGT-----------------TTDRSTPVRVPGLSNVVAVAAGGDHTcaLKADGT-----V 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 132 WGMGLNKDSQLGfhrsrkDKTRGYEyvlePSPVSLPLDrpqeTRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRkvv 211
Cdd:COG5184   70 WCWGNNSYGQLG------DGTTTDR----TTPVKVPGL----TGVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGD--- 132

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 212 eneiYSESHRVHRMQDFDGQ--VVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLagvNVIQVA 289
Cdd:COG5184  133 ----GTTTNRLTPVQVDAGLsgVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLS---GVVAVA 205

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 290 TYGDCCLAVSADGGLFGWGNSEYLQL---ASVTDSTQVNVPrclhfsGVGKVRQAACGGT-GCAVLNGeGHVFVWG---Y 362
Cdd:COG5184  206 AGGDHSCALKSDGTVWCWGSNSSGQLgdgTTTDRATPVQVA------GLTGVVAIAAGGShTCALKSD-GTVWCWGdnsY 278

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 527122092 363 GILGKGpNLVESAVPEMIPptlfGLTefnpeiQVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFP 437
Cdd:COG5184  279 GQLGDG-TTTDRSTPVKVP----GLS------GVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTP 342
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 131-455 3.96e-36

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 136.26  E-value: 3.96e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 131 VWGMGLNKDSQLGfhrsrkdktRGyeyvlEPSPVSLPLDRPQETRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGrkv 210
Cdd:COG5184   19 VWCWGDNSYGQLG---------DG-----TTTDRSTPVRVPGLSNVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG--- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 211 veNEIYSESHRVHRMQDFDGqVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGDLAgvNVIQVAT 290
Cdd:COG5184   82 --DGTTTDRTTPVKVPGLTG-VVAVAAGYYHSCALKSDGTVWCWGDNSSGQLGDGTTTNRLTPVQVDAGLS--GVVAIAA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 291 YGDCCLAVSADGGLFGWGNSEYLQLASVTdSTQVNVPRclHFSGVGKVRQAACGG-TGCAVLNGeGHVFVWG---YGILG 366
Cdd:COG5184  157 GGYHTCALKSDGTVWCWGANSYGQLGDGT-TTDRPTPV--QVGGLSGVVAVAAGGdHSCALKSD-GTVWCWGsnsSGQLG 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 367 KGPNlVESAVPEMIPptlfGLTefnpeiQVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEP 446
Cdd:COG5184  233 DGTT-TDRATPVQVA----GLT------GVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVKVPGLSGV 301


                 ....*....
gi 527122092 447 VDVACGVDH 455
Cdd:COG5184  302 VAVAAGSSH 310
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 233-455 3.09e-27

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 111.61  E-value: 3.09e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 233 VQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPTKLGGdlaGVNVIQVATYGDCCLAVSADGGLFGWGNSEY 312
Cdd:COG5184    1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVRVPG---LSNVVAVAAGGDHTCALKADGTVWCWGNNSY 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 313 LQL--ASVTDSTQ-VNVPrclhfsGVGKVRQAACGG-TGCAVLNGeGHVFVWG---YGILGKGPNlVESAVPEMIPPTLF 385
Cdd:COG5184   78 GQLgdGTTTDRTTpVKVP------GLTGVVAVAAGYyHSCALKSD-GTVWCWGdnsSGQLGDGTT-TNRLTPVQVDAGLS 149

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 386 GltefnpeiqVSRIRCGLSHFAALTNKGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPGEPVDVACGVDH 455
Cdd:COG5184  150 G---------VVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVVAVAAGGDH 210
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 55-274 4.29e-15

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 76.17  E-value: 4.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092  55 AARAD-RVFVWGFSFSGALGVPSFVVpssgpgpragarprrriQPVPYRLELDQKISSAACGYGFT--LLSSKTadvtkV 131
Cdd:COG5184  163 ALKSDgTVWCWGANSYGQLGDGTTTD-----------------RPTPVQVGGLSGVVAVAAGGDHScaLKSDGT-----V 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092 132 WGMGLNKDSQLGfhrsrkdkTRGYEYVLEPSPVSLPldrpqeTRVLQVSCGRAHSLVLTDREGVFSMGNNSYGQCGRKvv 211
Cdd:COG5184  221 WCWGSNSSGQLG--------DGTTTDRATPVQVAGL------TGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDG-- 284

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 527122092 212 eneiySESHRVHRMQ-DFDGQVVQVACGQDHSLFLTDKGEVYSCGWGADGQTGLGHYNITSSPT 274
Cdd:COG5184  285 -----TTTDRSTPVKvPGLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
232-261 1.04e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 47.80  E-value: 1.04e-07
                          10        20        30
                  ....*....|....*....|....*....|
gi 527122092  232 VVQVACGQDHSLFLTDKGEVYSCGWGADGQ 261
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
412-455 3.00e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 46.74  E-value: 3.00e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 527122092  412 KGELFVWGKNIRGCLGIGRLEDQYFPWRVTMPG--EPVDVACGVDH 455
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSgnKVVQVACGGDH 46
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
301-351 3.73e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 43.66  E-value: 3.73e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 527122092  301 DGGLFGWGNSEYLQLASVTDSTQvNVPRCLHFSGVGKVRQAACGGTGCAVL 351
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENV-LVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
195-245 1.12e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 42.50  E-value: 1.12e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 527122092  195 VFSMGNNSYGQCGRKVVENEIYSEshrvhRMQDFDGQ-VVQVACGQDHSLFL 245
Cdd:pfam00415   4 VYTWGRNDYGQLGLGTTENVLVPQ-----KVEGLSGNkVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
176-205 1.41e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 41.64  E-value: 1.41e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 527122092  176 VLQVSCGRAHSLVLTDREGVFSMGNNSYGQ 205
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
248-298 4.56e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 40.58  E-value: 4.56e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 527122092  248 KGEVYSCGWGADGQTGLGHYNITSSPTKLGGdLAGVNVIQVATYGDCCLAV 298
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEG-LSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
396-425 6.53e-04

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 37.02  E-value: 6.53e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 527122092  396 VSRIRCGLSHFAALTNKGELFVWGKNIRGC 425
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
130-189 1.86e-03

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 36.34  E-value: 1.86e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 527122092  130 KVWGMGLNKDSQLGfHRSRKDktrgyeyVLEPSPVSLPLDRpqetRVLQVSCGRAHSLVL 189
Cdd:pfam00415   3 RVYTWGRNDYGQLG-LGTTEN-------VLVPQKVEGLSGN----KVVQVACGGDHTVAL 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH