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Conserved domains on  [gi|15219941|ref|NP_176347|]
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PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]

Protein Classification

PLN00048 family protein( domain architecture ID 11476354)

PLN00048 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 18-273 2.93e-179

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


:

Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 493.60  E-value: 2.93e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   18 ARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLA 97
Cdd:PLN00048   7 ARRALSSSAARSSSAKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   98 YGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNP 177
Cdd:PLN00048  87 YGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKP 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDH 257
Cdd:PLN00048 167 GSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDH 246

                        250
                 ....*....|....*.
gi 15219941  258 LADPVNNNVLTSLKFH 273
Cdd:PLN00048 247 LADPVNNNVLTNLKFH 262
 
Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 18-273 2.93e-179

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 493.60  E-value: 2.93e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   18 ARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLA 97
Cdd:PLN00048   7 ARRALSSSAARSSSAKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   98 YGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNP 177
Cdd:PLN00048  87 YGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKP 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDH 257
Cdd:PLN00048 167 GSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDH 246

                        250
                 ....*....|....*.
gi 15219941  258 LADPVNNNVLTSLKFH 273
Cdd:PLN00048 247 LADPVNNNVLTNLKFH 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
64-244 6.09e-53

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 169.41  E-value: 6.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941    64 SYLDGSLPGDYGFDPLGLSDPEGTggfiePRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAEtalPWFQTGVIPPa 143
Cdd:pfam00504   3 AYLDGSLPGDYGFDPLGLSADPET-----FKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEP---VWFEAGAVAL- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   144 gtytYWADNYTLFVL-EMALMGFAEHRRLQDWYNPGsmgkqyflglekgLAGSGNPAYPGGPFFNPLGF-GKDEKSLKEL 221
Cdd:pfam00504  74 ----HAQSVPTLLALqILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLaKKDPETLAEL 136

                         170       180
                  ....*....|....*....|...
gi 15219941   222 KLKEVKNGRLAMLAILGYFIQGL 244
Cdd:pfam00504 137 KLKELKNGRLAMIAFLGFFVQEL 159
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 92-126 3.88e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 38.00  E-value: 3.88e-04
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15219941  92 EPR--WLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Cdd:COG5743  20 EPRfgFTPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
 
Name Accession Description Interval E-value
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 18-273 2.93e-179

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 493.60  E-value: 2.93e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   18 ARQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLA 97
Cdd:PLN00048   7 ARRALSSSAARSSSAKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   98 YGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNP 177
Cdd:PLN00048  87 YGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKP 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  178 GSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDH 257
Cdd:PLN00048 167 GSMGKQYFLGLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDH 246

                        250
                 ....*....|....*.
gi 15219941  258 LADPVNNNVLTSLKFH 273
Cdd:PLN00048 247 LADPVNNNVLTNLKFH 262
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 28-270 3.20e-70

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 217.05  E-value: 3.20e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   28 ASASQKKSSFVVKAAAtppvkQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTggfiepRWLAYGEIINGRF 106
Cdd:PLN00147  25 RSISSVAASSGGINPV-----VAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLgEDPESL------KWYVQAELVHSRF 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  107 AMLGAAGAIAPEILGKAGLipaeTALP-WFQTGvippaGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-Y 184
Cdd:PLN00147  94 AMAGVAGILFTDLLRVTGI----RNLPvWYEAG-----AVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEgS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  185 FLGLEKGLAGSgNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNN 264
Cdd:PLN00147 165 FFGLEAALEGL-EPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHK 243


                 ....*.
gi 15219941  265 NVLTSL 270
Cdd:PLN00147 244 TIIQTL 249
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 25-267 1.64e-61

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 194.46  E-value: 1.64e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   25 KPVASASQKKSSFVVKAaatppVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTggfiepRWLAYGEIIN 103
Cdd:PLN00097  21 RPRGVASKARASRGPGA-----VAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGaDPEML------KWFVQAELMH 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  104 GRFAMLGAAGAIAPEILGKAGLipaeTALP-WFQtgvippAGTY-TYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG 181
Cdd:PLN00097  90 ARWAMLGLAGCVAPELLTKIGM----ADLPnWID------AAKWdGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMN 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  182 KQYFLGLEKGLAGSgNPAYPGGpFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADP 261
Cdd:PLN00097 160 EDPLFGANKGDTNT-DVGYPKG-LFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADP 237


                 ....*.
gi 15219941  262 VNNNVL 267
Cdd:PLN00097 238 GHNGIF 243
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 19-273 2.30e-55

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 179.34  E-value: 2.30e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   19 RQIFGSKPVASASQKKSSFVVKAAATPPVKQ-GANRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTggfiepRWL 96
Cdd:PLN00098  27 RPIVASQSGTGGRMKVRLNATKGGVSSVCEPlPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLgSDPELL------KWF 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   97 AYGEIINGRFAMLGAAGAIAPEILGKAGLIpaeTALPWFQtgvippAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYN 176
Cdd:PLN00098 101 AQAELMHSRWAMLAVAGILIPECLERLGFI---ENFSWYD------AGAREYFADPTTLFVVQMVLMGWAEGRRWADLIK 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  177 PGSmgkqyfLGLEKGLAGSGNP----AYPGGPFFNPLGFGK-DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPY 251
Cdd:PLN00098 172 PGC------VDIEPKLPNKTNPkpdvGYPGGLWFDPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPI 245

                        250       260
                 ....*....|....*....|..
gi 15219941  252 QNLLDHLADPVNNNVLTSLKFH 273
Cdd:PLN00098 246 ENLMAHLADPGHCNVFSAFTSH 267
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 41-271 2.96e-53

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 173.56  E-value: 2.96e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   41 AAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEI 119
Cdd:PLN00101  41 SSATRSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAeDPENL------KWFVQAELVNGRWAMLGVAGMLLPEV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  120 LGKAGLIPAETalpWFQtgvippAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMG-----KQYflGLEKGLAG 194
Cdd:PLN00101 115 FTKIGIINAPQ---WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNqdpifKQY--SLPPNEVG 183

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15219941  195 sgnpaYPGGpFFNPLGFGKDEkslkELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSLK 271
Cdd:PLN00101 184 -----YPGG-IFNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
64-244 6.09e-53

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 169.41  E-value: 6.09e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941    64 SYLDGSLPGDYGFDPLGLSDPEGTggfiePRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAEtalPWFQTGVIPPa 143
Cdd:pfam00504   3 AYLDGSLPGDYGFDPLGLSADPET-----FKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEP---VWFEAGAVAL- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   144 gtytYWADNYTLFVL-EMALMGFAEHRRLQDWYNPGsmgkqyflglekgLAGSGNPAYPGGPFFNPLGF-GKDEKSLKEL 221
Cdd:pfam00504  74 ----HAQSVPTLLALqILLLMGFLELARWQGGKAPG-------------LGGGGDRGYPGGFGFDPLGLaKKDPETLAEL 136

                         170       180
                  ....*....|....*....|...
gi 15219941   222 KLKEVKNGRLAMLAILGYFIQGL 244
Cdd:pfam00504 137 KLKELKNGRLAMIAFLGFFVQEL 159
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 40-265 1.74e-48

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 161.45  E-value: 1.74e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   40 KAAATPPVKQ----GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGtggFIEPRWLaygEIINGRFAMLGAA 112
Cdd:PLN00025  34 KTVAKAAGSGsiwyGPDRPKYLGpfSGETPSYLTGEFPGDYGWDTAGLSaDPET---FARNREL---EVIHARWAMLGAL 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  113 GAIAPEILGKAGLIPAETAlpWFQTGV-IPPAGTYTYWAdNYTL---------FVLEMALMGFAEHRRLqdwyNPGSMGK 182
Cdd:PLN00025 108 GCVTPELLAKNGVKFGEAV--WFKAGAqIFSEGGLDYLG-NPSLvhaqsilaiWACQVVLMGAVEGYRV----NGGPLGE 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  183 qyflglekglagSGNPAYPGGPFfNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPV 262
Cdd:PLN00025 181 ------------GLDPLYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 247


                 ...
gi 15219941  263 NNN 265
Cdd:PLN00025 248 ANN 250
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 31-266 9.16e-40

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 138.24  E-value: 9.16e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   31 SQKKSSFVVK-----AAATPPVKQGANrplWFASSQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEprwlayGEIING 104
Cdd:PLN00099  20 SSSKSKFASSvplpnANGSSRVTMSAD---WMPGQPRPPYLDGSAPGDFGFDPLRLGEvPENLERYKE------SELIHC 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  105 RFAMLGAAGAIAPEILGKAGLIPAETalpWFQTgvipPAGTYTY------WADNYTLFVLEMALMGFAEHRRlqdwynpg 178
Cdd:PLN00099  91 RWAMLAVPGILVPEALGLGNWVKAQE---WAAI----PGGQATYlgnpvpWGTLPTILAIEFLAIAFVEHQR-------- 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  179 SMGKQyflgLEKglagsgnPAYPGGPFfNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDH 257
Cdd:PLN00099 156 SMEKD----PEK-------KKYPGGAF-DPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATH 223


                 ....*....
gi 15219941  258 LADPVNNNV 266
Cdd:PLN00099 224 LADPWHNNI 232
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 19-272 2.68e-39

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 139.55  E-value: 2.68e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   19 RQIFGSKPVASASQKKSSFVVKAAATPPVKQGANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEprw 95
Cdd:PLN00171  74 RRLEETKKAAVEESSAFKAAAQKARNESFWYGEERPRWLGpiPYDYPDHLTGELPGDYGFDIAGLGkDPVAFDKYFN--- 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   96 layGEIINGRFAMLGAAGAIAPEILGKAGLIP-AETAlpWFQTGVIPPAG-TYTY-------WADNYTLFVL---EMALM 163
Cdd:PLN00171 151 ---FEILHARWAMLAALGVVIPEVLDLFGAVHfAEPV--WWRVGYAKLQGdTLDYlgipglhIAGSQGVIVIaicQALLM 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  164 GFAEHRRlqdwynpgsmgkqyFLGLEK----GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGY 239
Cdd:PLN00171 226 VGPEYAR--------------YCGIEAleplGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGF 291

                        250       260       270
                 ....*....|....*....|....*....|...
gi 15219941  240 FIQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF 272
Cdd:PLN00171 292 YIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLKL 324
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 52-269 1.50e-36

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 130.00  E-value: 1.50e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   52 NRPLWFASSQSLSYLDGSLPGDYGFDPLGL-SDPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEILGkaglipaet 130
Cdd:PLN00100  34 ARPMWYPGATAPKYLDGTMAGDYGFDPLRLgANPETL------PYLQEAELMNGRWAMAATAGILFTDAVG--------- 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  131 aLPWFQTgvippAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGkqyFLGlekglagsgnpAYPggpfFNPLG 210
Cdd:PLN00100  99 -LPKFWE-----AGAEKYGLDLQTLVLIQVVVMAVLEAARYRGFMKTGESG---VLS-----------FFP----FDPTG 154

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 15219941  211 FGKDEKslkelKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTS 269
Cdd:PLN00100 155 MDSPEM-----KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 18-270 2.35e-35

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 127.98  E-value: 2.35e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   18 ARQIFGSKPVASASQKKSSfvvkaaatppVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDP------------- 84
Cdd:PLN00187  27 ARFGFGKKKKAAKKAKKKS----------SKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPaeylqfdldsldq 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   85 --------EGTGGFIE----------PRWLAYG-------EIINGRFAMLGAAGAIAPEILgkaglipaeTALPWFQTGV 139
Cdd:PLN00187  97 nlaknlagDVIGTRTEaseikstpfqPYSEVFGlqrfrecELIHGRWAMLATLGALSVEAL---------TGVTWQDAGK 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  140 IPPAGTYTYWADNY-----TLFVLEMALMGFAEHRRLQDwynpgsmgkqyfLGLEKGLagsgnpaYPGGPFFNPLGFGKD 214
Cdd:PLN00187 168 VELVDGSSYLGQPLpfsitTLIWIEVLVIGYIEFQRNAE------------LDPEKRL-------YPGGKFFDPLGLAAD 228

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15219941  215 EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
Cdd:PLN00187 229 PEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 27-242 5.23e-26

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 102.70  E-value: 5.23e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   27 VASASQKKSSFVvkaaatPPVKQGAN--RPLWfassqslsyLDGSLPGDYGFDPLGL-SDPegtgGFIepRWLAYGEIIN 103
Cdd:PLN00170  44 VAAAAQPKKSWI------PAVKGGGNlvDPEW---------LDGSLPGDYGFDPLGLgKDP----AFL--KWYREAELIH 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  104 GRFAMLGAAGAIAPEilgkaglipAETALPWFQTGVIPPA-GTYTYWadnyTLFVLEMALMGFAEHRRLQDWYNPGSMGK 182
Cdd:PLN00170 103 GRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGAiAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPDSQSV 169

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15219941  183 QYFLGLEKGLA----GSGNPAYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Cdd:PLN00170 170 EWATPWSRTAEnfanATGLQGYPGGKFFDPLGLAgtvkdgvyiPDFEKLERLKLAEIKHARLAMVAMLIFYFE 242
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 61-251 2.13e-09

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 56.23  E-value: 2.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941   61 QSLSYLDGSLPGDYGFDPLGLSDPegtggfIEP--RWLAYGEIINGRFAMLGAAGAIAPE---ILGKA-------GLIPA 128
Cdd:PLN00089  44 AAKEFMFIGKTGSKKFDPLGLAEK------VEEflPWFRESELKHGRAAMLAVAGFIAPDfvrIPGEAysfaaipKTIDA 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15219941  129 ETALPwfQTGvipPAGTYTYWADNYTLFVLEMALMGFAEHRRLqdwynPGSMGkqyflglekglagsgnpaypggpfFNP 208
Cdd:PLN00089 118 HDALL--KSG---AMIQIFAWIGFVDLAVSAPAAAAAAEFDRT-----PGDFG------------------------FDL 163

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 15219941  209 LG-FGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG-PY 251
Cdd:PLN00089 164 LAlYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGfPY 208
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
203-249 6.81e-08

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 50.77  E-value: 6.81e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15219941   203 GPF-FNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
Cdd:pfam00504  11 GDYgFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 205-242 6.94e-06

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 45.89  E-value: 6.94e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 15219941  205 FFNPLGF--GKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Cdd:PLN00120  46 FFDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVGYLVT 85
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
57-119 1.51e-05

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 44.22  E-value: 1.51e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15219941    57 FASSQSLSYLDGSLPGDYGFDPLGLS--DPEGTggfiepRWLAYGEIINGRFAMLGAAGAIAPEI 119
Cdd:pfam00504 101 GKAPGLGGGGDRGYPGGFGFDPLGLAkkDPETL------AELKLKELKNGRLAMIAFLGFFVQEL 159
LHCA5 COG5743
Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy ...
 92-126 3.88e-04

Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family [Energy production and conversion]; Photosystem I light harvesting complex protein, LHCA5/LHCA6/HLI5/Ycf17 family is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444453 [Multi-domain]  Cd Length: 62  Bit Score: 38.00  E-value: 3.88e-04
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 15219941  92 EPR--WLAYGEIINGRFAMLGAAGAIAPEILGKAGLI 126
Cdd:COG5743  20 EPRfgFTPYAERLNGRLAMIGFVALLLIELLTGQGFL 56
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 201-248 2.48e-03

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 38.37  E-value: 2.48e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 15219941  201 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
Cdd:PLN00170  75 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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