|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
73-471 |
9.26e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 9.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 73 TGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINasedsriDELRKLsqerdkawQSELEAMQR 152
Cdd:TIGR02168 662 TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE-------EELEQL--------RKELEELSR 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 153 QHAMDSAALSSTMNEVQKLKAQL-SESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLE 231
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIaQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 232 MLRSDGMKMSEACNSLTTELEQSKSEV----RSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVE 307
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIaateRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 308 VTERRYHEEYIQSTLQIRTAYEQVDEVKSGY---AQREAELGEELKKTKAERDSLHERLMdkeaklrilvdeneilnski 384
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELeelREKLAQLELRLEGLEVRIDNLQERLS-------------------- 946
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 385 kekEEVYLNLENSLnQNEPEDTGELKKLESDVMELRANL-------MDKEMELQSVMSQYESLRSEMETmqseknkaIDE 457
Cdd:TIGR02168 947 ---EEYSLTLEEAE-ALENKIEDDEEEARRRLKRLENKIkelgpvnLAAIEEYEELKERYDFLTAQKED--------LTE 1014
|
410
....*....|....
gi 15228082 458 ALAKLGSLTEEADK 471
Cdd:TIGR02168 1015 AKETLEEAIEEIDR 1028
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
104-508 |
2.59e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 104 KKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwqseleamqrqhamdsaalsstmNEVQKLKAQLSESENVEN 183
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----------------------ERYQALLKEKREYEGYEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 184 LRmELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKM-SEACNSLTTELEQSKSEVRSLE 262
Cdd:TIGR02169 229 LK-EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 263 QLVRQLEEEdeargnangdsssVEELKEEINVARQEISQLKSAVEVTERRYHEEyiqstlqirtayeqvdevksgyAQRE 342
Cdd:TIGR02169 308 RSIAEKERE-------------LEDAEERLAKLEAEIDKLLAEIEELEREIEEE----------------------RKRR 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 343 AELGEELKKTKAERDSLHERLMDKEAKLRILVDEneilNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRAN 422
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDE----LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 423 LMDKEMELqsvmsqyeslrSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKV 502
Cdd:TIGR02169 429 IAGIEAKI-----------NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
|
....*.
gi 15228082 503 QCDQWR 508
Cdd:TIGR02169 498 QARASE 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-503 |
1.18e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDkAWQSELEAMQRQHAmd 157
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-EAEEELEELAEELL-- 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 sAALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDG 237
Cdd:COG1196 390 -EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 238 MKmseacnSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARqeISQLKSAVEVTERRYhEEY 317
Cdd:COG1196 469 LE------EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAY-EAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 318 IQSTLQIRTAYEQVDEvksgyAQREAELGEELKKTKAERdsLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENS 397
Cdd:COG1196 540 LEAALAAALQNIVVED-----DEVAAAAIEYLKAAKAGR--ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 398 LNQNEPEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAE 477
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEE 692
|
410 420
....*....|....*....|....*.
gi 15228082 478 NATEQLGAAQVTNTELEAELRRLKVQ 503
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLE 718
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
85-378 |
2.99e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 2.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 85 QLQEELKKAKEQLSASEalKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMDSAALSST 164
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEEL-RLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 165 MNEVQKLKAQL-SESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRsdgmkmSEA 243
Cdd:COG1196 294 LAELARLEQDIaRLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE------EAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 244 CNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEyIQSTLQ 323
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE-EEALEE 446
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 15228082 324 IRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENE 378
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
104-415 |
1.39e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 104 KKEAQDQAEETKQQLMEINAsedsRIDELRK----LSQERDKA-----------------WQSELEAMQRQHAMDSAALS 162
Cdd:COG1196 174 KEEAERKLEATEENLERLED----ILGELERqlepLERQAEKAeryrelkeelkeleaelLLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 163 STMNEVQKLKAQLSESEN-VENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMS 241
Cdd:COG1196 250 ELEAELEELEAELAELEAeLEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 242 EACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNAngdsssVEELKEEINVARQEISQLKSAvEVTERRYHEEYIQST 321
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEA------LLEAEAELAEAEEELEELAEE-LLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 322 LQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQN 401
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
330
....*....|....
gi 15228082 402 EPEDTGELKKLESD 415
Cdd:COG1196 483 LEELAEAAARLLLL 496
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-501 |
1.58e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMD 157
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDG 237
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 238 mkmseacNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDS-----------------------------SSVEEL 288
Cdd:COG1196 480 -------AELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeaaleaalaaALQNIV 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 289 KEEINVARQEISQLKSAVEVTERRYHEEyIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMD--- 365
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLD-KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVaar 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 366 KEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEME 445
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE 711
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15228082 446 TMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQLGAAQVTNT------ELEAELRRLK 501
Cdd:COG1196 712 AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdleELERELERLE 773
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-376 |
1.77e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMD 157
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAheivsgTEKQLEIANLTLEMLRSDG 237
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA------EAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 238 MKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEY 317
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 15228082 318 IQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDE 376
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-483 |
2.25e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.46 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 12 EVPQKKSPASTPKTARKLKTSESDPVSSPNTKIRTPKTQSPKVVADRRSPRTPVNEIQKKRTGKTPELASQISQLQEELK 91
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 92 KAKEQLSASEALKKEAQD----QAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSSTMNE 167
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADElkkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 168 VQKLKAQLSESENVENLRMELNETLSLVEKLRgelfDAKEGEAQAHEIVSGTE-KQLEIANLTLEMLRSDGMKMSEACNS 246
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAK----KAAEAKKKADEAKKAEEaKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 247 ltTELEQSKSEVRSLEQlVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQL---KSAVEVTERRYHEEYIQSTLQ 323
Cdd:PTZ00121 1548 --ADELKKAEELKKAEE-KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLyeeEKKMKAEEAKKAEEAKIKAEE 1624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 324 IRTAyeqvDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEP 403
Cdd:PTZ00121 1625 LKKA----EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 404 EDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQL 483
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
70-376 |
6.27e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 6.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 70 KKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEA 149
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 150 MQRQHAMDSAALSSTMNEVQKLKAQLSESEnvenlrMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLT 229
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERLAKLE------AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 230 LEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARgnangdSSSVEELKEEINVARQEISQLKSAVEVT 309
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL------SEELADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15228082 310 ERRYHEeyiqstlqIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDE 376
Cdd:TIGR02169 447 ALEIKK--------QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-505 |
9.89e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 9.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 245 NSLTTELEQSKSEVRSLEQ----LVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEYIQS 320
Cdd:TIGR02168 235 EELREELEELQEELKEAEEeleeLTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 321 TLQIRTAYEQVDEVKsgyaQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQ 400
Cdd:TIGR02168 315 ERQLEELEAQLEELE----SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 401 NEpedtGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKA-IDEALAKLGSLTEEADKSGKRAENA 479
Cdd:TIGR02168 391 LE----LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeLEELEEELEELQEELERLEEALEEL 466
|
250 260
....*....|....*....|....*.
gi 15228082 480 TEQLGAAQVTNTELEAELRRLKVQCD 505
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLD 492
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
80-389 |
2.07e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 80 ASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERdkawqsELEAMQRQHamdsA 159
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER------EIAELEAEL----E 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 160 ALSSTMNEVQKLKAQLSEsenvenLRMELNETLSLVEKLRGElfdakegeaqaheiVSGTEKQLEianltlemlrsdgmk 239
Cdd:COG4913 679 RLDASSDDLAALEEQLEE------LEAELEELEEELDELKGE--------------IGRLEKELE--------------- 723
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 240 mseacnSLTTELEQSKSEVRSLEQLVRQLEEE--DEARGNANGDSSS---VEELKEEINVARQEISQLKSAVEVTERRYH 314
Cdd:COG4913 724 ------QAEEELDELQDRLEAAEDLARLELRAllEERFAAALGDAVErelRENLEERIDALRARLNRAEEELERAMRAFN 797
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 315 EEYIQSTLQIRTAYEQVDEvksgYAQREAELgeelkktkaERDSLHErlmdKEAKLRILVDENEI-----LNSKIKEKEE 389
Cdd:COG4913 798 REWPAETADLDADLESLPE----YLALLDRL---------EEDGLPE----YEERFKELLNENSIefvadLLSKLRRAIR 860
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
59-514 |
7.72e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 7.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 59 RSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQ-----------------LMEI 121
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKldelaeelaeleekleeLKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 122 NASEDSRIDELRKLSQE---RDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQLSESE-NVENLRMELNETLSlvEK 197
Cdd:TIGR02168 353 LESLEAELEELEAELEElesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEdRRERLQQEIEELLK--KL 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 198 LRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARG- 276
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKa 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 277 ---NANGDSSSVEELKEEINVArqeiSQLKSAVEVT--ERRYH---------EEYIQSTLQIRTAYEQVDEVKSGYAQRE 342
Cdd:TIGR02168 511 llkNQSGLSGILGVLSELISVD----EGYEAAIEAAlgGRLQAvvvenlnaaKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 343 AELGEELKKTKAERDSLHERLMDKEAKLRIL----------VDENEILNSKIKEKEEVYLNL----------------EN 396
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvVDDLDNALELAKKLRPGYRIVtldgdlvrpggvitggSA 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 397 SLNQNEPEDTGELKKLESDVMELRANLMDKEMELQsvmsQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRA 476
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
490 500 510
....*....|....*....|....*....|....*...
gi 15228082 477 ENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAA 514
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
82-508 |
1.27e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 82 QISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAAL 161
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 162 SSTMNE--------------VQKLKAQLSESENVENLRMELNETL--------SLVEKLRGELfDAKEGEAQAHEIVSGT 219
Cdd:pfam15921 359 TEARTErdqfsqesgnlddqLQKLLADLHKREKELSLEKEQNKRLwdrdtgnsITIDHLRREL-DDRNMEVQRLEALLKA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 220 EKQLEIANLTLEMLRSDGMKMS-EACNSLTTELEQSKSEVRS-LEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQ 297
Cdd:pfam15921 438 MKSECQGQMERQMAAIQGKNESlEKVSSLTAQLESTKEMLRKvVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNA 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 298 EISQLKSAVEVTerryheeyIQSTLQIRTAYEQVDEVKSGYaqreaelgEELKKTKAERDSLHERLMDKEAKLRILVDEN 377
Cdd:pfam15921 518 EITKLRSRVDLK--------LQELQHLKNEGDHLRNVQTEC--------EALKLQMAEKDKVIEILRQQIENMTQLVGQH 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 378 EILNSKIkEKEEVYLNLENSLNQNEPEDTGELK-KLESDVMELRANLMDKEME-LQSVMSQYESLRSeMETMQSEKNKAI 455
Cdd:pfam15921 582 GRTAGAM-QVEKAQLEKEINDRRLELQEFKILKdKKDAKIRELEARVSDLELEkVKLVNAGSERLRA-VKDIKQERDQLL 659
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 15228082 456 DE---ALAKLGSLTEEADKSGKRAENATEQLgaaQVTNTELEAELRRLKVQCDQWR 508
Cdd:pfam15921 660 NEvktSRNELNSLSEDYEVLKRNFRNKSEEM---ETTTNKLKMQLKSAQSELEQTR 712
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
88-362 |
1.35e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 88 EELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALsSTMNE 167
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM-KLYEE 1603
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 168 VQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEacnsl 247
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE----- 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 248 ttELEQSKSEVRSLEQLVRQLEEE----DEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEYIQSTLQ 323
Cdd:PTZ00121 1679 --EAKKAEEDEKKAAEALKKEAEEakkaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 15228082 324 IRTAYEQVDEVKSGYAQR---EAELGEELKKTKAERDSLHER 362
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRkekEAVIEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
247-534 |
1.38e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 247 LTTELEQSKSEVRSLEQLVRQLEEEDEARgnangdssSVEELKEEINVARQEISQLKSAVEvterryheeyiqstlQIRT 326
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAELEELEA--------ELEELEAELEELEAELAELEAELE---------------ELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 327 AYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPedt 406
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE--- 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 407 gELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEmetMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQLGAA 486
Cdd:COG1196 352 -ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE---LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 15228082 487 QVTNTELEAELRRLKVQCDQWRKAAEAAATMLSGGNNNNNSNGKYVER 534
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
41-503 |
1.47e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 41 NTKIRTPKTQSPKVVADRRSPRTPVNEIQKKRTgktpELASQISQLQEELKKAKEQLSA-----SEALKKEAQDQAEETK 115
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEEllkklEEAELKELQAELEELE 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 116 QQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMDSAALSSTMNEVQKLKaqlSESENVENLRMELNEtLSLV 195
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEA-EQALDAAERELAQLQARLDSLERLQENLE---GFSEGVKALLKNQSG-LSGI 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 196 EKLRGELFDAKEGEAQAHEIVSGTEKQ------LEIANLTLEMLRS-----------DGMKMSEACNSLTTELEQSKSEV 258
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAALGGRLQavvvenLNAAKKAIAFLKQnelgrvtflplDSIKGTEIQGNDREILKNIEGFL 601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 259 RSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAV---EVTERRY-----HEEYIQSTLQIRTAYEQ 330
Cdd:TIGR02168 602 GVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTldgDLVRPGGvitggSAKTNSSILERRREIEE 681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 331 VdevksgyAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDT---G 407
Cdd:TIGR02168 682 L-------EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAqlsK 754
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 408 ELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEKN---KAIDEALAKLGSLTEEADKSGKRAENATEQLG 484
Cdd:TIGR02168 755 ELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKalrEALDELRAELTLLNEEAANLRERLESLERRIA 834
|
490
....*....|....*....
gi 15228082 485 AAQVTNTELEAELRRLKVQ 503
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSED 853
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
54-515 |
1.77e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 54 VVADRRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMeinASEDSRIdELR 133
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHG---AFLDADI-ETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 134 KLSQERDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQLSESENVEnlrmelnetlslVEKLRGELFDAKEGEAQAH 213
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRD------------IAGIKDKLAKIREARDRQL 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 214 EIVSGTEKQLeianltlemlrsdgmkmseaCNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNangDSSSVEELKEEIN 293
Cdd:pfam12128 411 AVAEDDLQAL--------------------ESELREQLEAGKLEFNEEEYRLKSRLGELKLRLN---QATATPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 294 VARQEISQLKSAVEvtERRYHEEYIQSTL-QIRTAYEQVDEVKSGYAQREAELGEELKKTKAERD----SLHERLmDKEA 368
Cdd:pfam12128 468 NFDERIERAREEQE--AANAEVERLQSELrQARKRRDQASEALRQASRRLEERQSALDELELQLFpqagTLLHFL-RKEA 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 369 KlrilvDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRAN-LMDKEMELQSVMSQYESLRSEmetm 447
Cdd:pfam12128 545 P-----DWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPeWAASEEELRERLDKAEEALQS---- 615
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228082 448 QSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQlgaAQVTNTELEAELRRLKVQCDQWRKAAEAAA 515
Cdd:pfam12128 616 AREKQAAAEEQLVQANGELEKASREETFARTALKN---ARLDLRRLFDEKQSEKDKKNKALAERKDSA 680
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
70-544 |
2.09e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 70 KKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEdSRIDELRKLSQE--RDKAWQSEL 147
Cdd:PRK03918 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV-KELKELKEKAEEyiKLSEFYEEY 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 148 EAMQRQHAMDSAALSSTMNEVQKLKAQLSESEN-VENLRMELNETLSLVEKLRG---ELFDAKEGEAQAHEIVSgtekql 223
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERIKELEEKEErLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKK------ 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 224 EIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANG-------------DSSSVEELKE 290
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgrelteehRKELLEEYTA 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 291 EINVARQEISQLKSAVEVTERRYH--EEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEA 368
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 369 KLRILVDE----------NEILNSKIKEKEEvylNLENSLNQNEPEDTGELKKLESDVMELRAnLMDKEMELQSVMSQYE 438
Cdd:PRK03918 540 EIKSLKKElekleelkkkLAELEKKLDELEE---ELAELLKELEELGFESVEELEERLKELEP-FYNEYLELKDAEKELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 439 SLRSEMETMQSEKNKA---IDEALAKLGSLTEEADKSGKRAENatEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAA 515
Cdd:PRK03918 616 REEKELKKLEEELDKAfeeLAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
490 500
....*....|....*....|....*....
gi 15228082 516 TMLSGGNNNNNSNGKYVERTGSLESPLRR 544
Cdd:PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALER 722
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
78-492 |
2.14e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQlsasealkkeaQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMD 157
Cdd:PRK02224 210 GLESELAELDEEIERYEEQ-----------REQARETRDEADEVLEEHEERREELETLEAEIEDL-RETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALSSTMNEVQKLKAQLSESENVENLRMELNETLSL-VEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSD 236
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEArREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 237 GMKMSEACNSLTTELEQSKSEVR----SLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEvTERR 312
Cdd:PRK02224 358 AEELREEAAELESELEEAREAVEdrreEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE-ATLR 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 313 YHEEYIQSTLQIRTA------------YEQVDEVkSGYAQREAELGEELKKTKAERDSLHERLmDKEAKLRILVDENEIL 380
Cdd:PRK02224 437 TARERVEEAEALLEAgkcpecgqpvegSPHVETI-EEDRERVEELEAELEDLEEEVEEVEERL-ERAEDLVEAEDRIERL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 381 NSKIKEKEEVYLNLENSLNqnepEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEK--NKAIDEA 458
Cdd:PRK02224 515 EERREDLEELIAERRETIE----EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLaeLKERIES 590
|
410 420 430
....*....|....*....|....*....|....
gi 15228082 459 LAKLGSLTEEADKSGKRAENATEQLGAAQVTNTE 492
Cdd:PRK02224 591 LERIRTLLAAIADAEDEIERLREKREALAELNDE 624
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
65-311 |
2.47e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 2.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 65 VNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQD-------QAEETKQQLMEINASEDSRIDELRKLSQ 137
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKelyalanEISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 138 ERDKaWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQLSESENV-ENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIV 216
Cdd:TIGR02168 324 QLEE-LESKLDELAEELAELEEKLEELKEELESLEAELEELEAElEELESRLEELEEQLETLRSKVAQLELQIASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 217 SGTEKQLEIANLTLEMLRSDgmKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGD-SSSVEELKEEINVA 295
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQE--IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEElREELEEAEQALDAA 480
|
250
....*....|....*.
gi 15228082 296 RQEISQLKSAVEVTER 311
Cdd:TIGR02168 481 ERELAQLQARLDSLER 496
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
54-311 |
3.14e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 3.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 54 VVADRRSPRTPVNEIQKKRTGKTPELA---SQISQLQEELKKAKEQLSASEALKKEA--------QDQAEETKQQLMEIN 122
Cdd:COG3096 827 AVAFAPDPEAELAALRQRRSELERELAqhrAQEQQLRQQLDQLKEQLQLLNKLLPQAnlladetlADRLEELREELDAAQ 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 123 ASE-------------DSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSstMNEVQKLKAQLSESENVEnlrmELN 189
Cdd:COG3096 907 EAQafiqqhgkalaqlEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFA--LSEVVQRRPHFSYEDAVG----LLG 980
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 190 ETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDgmkmSEACNSLTTELEQsksevrSLEQLVRQLE 269
Cdd:COG3096 981 ENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSS----RDAKQQTLQELEQ------ELEELGVQAD 1050
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 15228082 270 EEDEARGNANGDsssveELKEEINVARQEISQLKSAVEVTER 311
Cdd:COG3096 1051 AEAEERARIRRD-----ELHEELSQNRSRRSQLEKQLTRCEA 1087
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
70-406 |
4.47e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 4.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 70 KKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEA 149
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 150 MQRQHAMDSAALSSTmnevqKLKAQLSESENVENLRMELNETLSLVEKLRgelfDAKEGEAQAHEIVSGTEKQLEIANLT 229
Cdd:PTZ00121 1569 AKKAEEDKNMALRKA-----EEAKKAEEARIEEVMKLYEEEKKMKAEEAK----KAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 230 L----EMLRSDGMKMSEACNSLTTELEQSKSE--VRSLEQLVRQLEEE---DEARGNANGDSSSVEELKEEINVARQEIS 300
Cdd:PTZ00121 1640 KkeaeEKKKAEELKKAEEENKIKAAEEAKKAEedKKKAEEAKKAEEDEkkaAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 301 QLKSAVEVTERRYHEEYIQSTLQIRTAYE--QVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENE 378
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
330 340
....*....|....*....|....*...
gi 15228082 379 ILNSKIKEKEEVYLNLENSLNQNEPEDT 406
Cdd:PTZ00121 1800 IKDIFDNFANIIEGGKEGNLVINDSKEM 1827
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
104-471 |
6.27e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 6.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 104 KKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMDSAALSSTMNEVQKLKAQLSESE-NVE 182
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL-SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEeDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 183 NLRMELNETLSLVEKLRGELfdaKEGEAQAHEIvsgtekQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLE 262
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARI---EELEEDLHKL------EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 263 Q-LVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEeyiqstlqirtayeqvdevksgYAQR 341
Cdd:TIGR02169 819 QkLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE----------------------LEAA 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 342 EAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEdtgeLKKLESDVMElra 421
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP----KGEDEEIPEE--- 949
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 15228082 422 nlmdkEMELQSVMSQYESLRSEMETMQSEKNKAIDE---ALAKLGSLTEEADK 471
Cdd:TIGR02169 950 -----ELSLEDVQAELQRVEEEIRALEPVNMLAIQEyeeVLKRLDELKEKRAK 997
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
78-501 |
8.81e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 8.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLsqerdkawQSELEAMQRQHAMD 157
Cdd:TIGR04523 236 KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQL--------KSEISDLNNQKEQD 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 -----SAALSSTMNEVQKLKAQLSESENVENlrmELNETLSLVEKLRGELFDAKegeaqaheivSGTEKQLEIANLTLEM 232
Cdd:TIGR04523 308 wnkelKSELKNQEKKLEEIQNQISQNNKIIS---QLNEQISQLKKELTNSESEN----------SEKQRELEEKQNEIEK 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 233 LRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEE-DEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTER 311
Cdd:TIGR04523 375 LKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQiKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 312 RYhEEYIQSTLQIRTayeQVDEVKSGYAQREAELGE---ELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEke 388
Cdd:TIGR04523 455 II-KNLDNTRESLET---QLKVLSRSINKIKQNLEQkqkELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK-- 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 389 evylnLENSLNQNEPEDTGELKKLESDVMELRANLMDKEM-ELQSVMSQYESLRSEMETMQSEKNKAIDEALAKLGSLTE 467
Cdd:TIGR04523 529 -----LESEKKEKESKISDLEDELNKDDFELKKENLEKEIdEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIK 603
|
410 420 430
....*....|....*....|....*....|....
gi 15228082 468 EADKSGKRAENATEQLGAAQVTNTELEAELRRLK 501
Cdd:TIGR04523 604 EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
70-301 |
9.19e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.75 E-value: 9.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 70 KKRTGKTPELASQISQLQEEL---KKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRklsQERDKAWQSE 146
Cdd:PRK11281 49 NKQKLLEAEDKLVQQDLEQTLallDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETR---ETLSTLSLRQ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 147 LEAMqrqhamdsaaLSSTMNEVQKLKAQLSE-----------SENVENlrmELNETLSLVEKLRGELFDAKEGEAQahei 215
Cdd:PRK11281 126 LESR----------LAQTLDQLQNAQNDLAEynsqlvslqtqPERAQA---ALYANSQRLQQIRNLLKGGKVGGKA---- 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 216 VSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQlvRQLEEEdeargnangdsssVEELKEEINVA 295
Cdd:PRK11281 189 LRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARI--QRLEHQ-------------LQLLQEAINSK 253
|
....*.
gi 15228082 296 RQEISQ 301
Cdd:PRK11281 254 RLTLSE 259
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
242-400 |
9.71e-06 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 48.54 E-value: 9.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 242 EACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANgDSSSVEELKEeinvARQEISQLKSAVEVTERRYHEEyiqst 321
Cdd:COG0542 397 EAAARVRMEIDSKPEELDELERRLEQLEIEKEALKKEQ-DEASFERLAE----LRDELAELEEELEALKARWEAE----- 466
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 322 lqiRTAYEQVDEVKSGYAQREAELGEELKKTKAerdsLHERLMDKEAKLRILVDENEILN----------SKIKEKE-EV 390
Cdd:COG0542 467 ---KELIEEIQELKEELEQRYGKIPELEKELAE----LEEELAELAPLLREEVTEEDIAEvvsrwtgipvGKLLEGErEK 539
|
170
....*....|
gi 15228082 391 YLNLENSLNQ 400
Cdd:COG0542 540 LLNLEEELHE 549
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
69-367 |
1.16e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 69 QKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINaSEDSRIDELRKLSQERDKAWQSELE 148
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE-KEIEQLEQEEEKLKERLEELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 149 AMQRQHAMDSAALSSTMNEVQKLKAQLSE-SENVENLRMELNEtlSLVEKLRGELFDAKEGEAQAHEIVSGTEKQL---- 223
Cdd:TIGR02169 748 SLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREIEQKLnrlt 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 224 --------EIANLTLEMLRSDGMKMS--EACNSLTTELEQSKSEVRSLEQLVRQLEEEDEargnanGDSSSVEELKEEIN 293
Cdd:TIGR02169 826 lekeylekEIQELQEQRIDLKEQIKSieKEIENLNGKKEELEEELEELEAALRDLESRLG------DLKKERDELEAQLR 899
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15228082 294 VARQEISQLKSAVEvtERRYHEEYIQSTLQIrtAYEQVDEVKSGYAQREAELGEE--LKKTKAERDSLHERLMDKE 367
Cdd:TIGR02169 900 ELERKIEELEAQIE--KKRKRLSELKAKLEA--LEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALE 971
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
80-312 |
1.51e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 80 ASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMDSA 159
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-EAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 160 ALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDA--KEGEAQAHEIVSgTEKQLEIANLTLEMLRSDG 237
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYlaPARREQAEELRA-DLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15228082 238 MKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARgnangdsssVEELKEEINVARQEISQLKSAVEVTERR 312
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAE---------LAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
82-483 |
2.10e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 82 QISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDE--LRKLSQERDKAWQSELEAMQ-------R 152
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEagLDDADAEAVEARREELEDRDeelrdrlE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 153 QHAMDSAALSSTMNEVQKLKAQLSES-----ENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIAN 227
Cdd:PRK02224 332 ECRVAAQAHNEEAESLREDADDLEERaeelrEEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 228 LTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQ---------------LEEEDEARGNANGDSSSVEELKEEI 292
Cdd:PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphVETIEEDRERVEELEAELEDLEEEV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 293 NVARQEISQLKSAVEvTERRyheeyIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRI 372
Cdd:PRK02224 492 EEVEERLERAEDLVE-AEDR-----IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 373 LVDEneilnskikEKEEVylnleNSLNQNEPEDTGELKKLE--SDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSE 450
Cdd:PRK02224 566 EAEE---------AREEV-----AELNSKLAELKERIESLEriRTLLAAIADAEDEIERLREKREALAELNDERRERLAE 631
|
410 420 430
....*....|....*....|....*....|....
gi 15228082 451 KNKAIDEALAKL-GSLTEEADKSGKRAENATEQL 483
Cdd:PRK02224 632 KRERKRELEAEFdEARIEEAREDKERAEEYLEQV 665
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
179-394 |
2.53e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.23 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 179 ENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHeiVSGTEKQLEIANLTLEmlrsdgmKMSEACNSLTTELEQSKSEV 258
Cdd:PRK05771 46 RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVS--VKSLEELIKDVEEELE-------KIEKEIKELEEEISELENEI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 259 RSLEQLVRQLE-------EEDEARGNAN-----G--DSSSVEELKEEINVARQE-ISQLKS---AVEVTERRYHEEyIQS 320
Cdd:PRK05771 117 KELEQEIERLEpwgnfdlDLSLLLGFKYvsvfvGtvPEDKLEELKLESDVENVEyISTDKGyvyVVVVVLKELSDE-VEE 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15228082 321 TLQiRTAYEQVDEVKSGYAQRE-AELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNL 394
Cdd:PRK05771 196 ELK-KLGFERLELEEEGTPSELiREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKF 269
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
78-515 |
3.59e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 3.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQlmeINASEDSRIDELRKLSqerdKAWQSELEAMQRQHAMD 157
Cdd:COG4913 292 LLEAELEELRAELARLEAELERLEARLDALREELDELEAQ---IRGNGGDRLEQLEREI----ERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALsstmnEVQKLKAQLSESE------NVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEivsgtEKQLEIANLTLE 231
Cdd:COG4913 365 EALL-----AALGLPLPASAEEfaalraEAAALLEALEEELEALEEALAEAEAALRDLRRELR-----ELEAEIASLERR 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 232 MLRSDGmKMSEACNSLTTELEQSKSEVRSLEQLVrQLEEEDEA-RG---------------------------NANGDSS 283
Cdd:COG4913 435 KSNIPA-RLLALRDALAEALGLDEAELPFVGELI-EVRPEEERwRGaiervlggfaltllvppehyaaalrwvNRLHLRG 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 284 SVEELKEEINVARQEISQLK--SAVEVTERRYHE--EYIQSTLQIRTAYEQVDE----------------VKSGYAQREa 343
Cdd:COG4913 513 RLVYERVRTGLPDPERPRLDpdSLAGKLDFKPHPfrAWLEAELGRRFDYVCVDSpeelrrhpraitragqVKGNGTRHE- 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 344 elgeelkktKAERDSLHERLM---DKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEpedtgELKKLESDVMELR 420
Cdd:COG4913 592 ---------KDDRRRIRSRYVlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ-----ERREALQRLAEYS 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 421 ANLMDkemeLQSVMSQYESLRSEMEtmqseknkAIDEALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRL 500
Cdd:COG4913 658 WDEID----VASAEREIAELEAELE--------RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQA 725
|
490
....*....|....*
gi 15228082 501 KVQCDQWRKAAEAAA 515
Cdd:COG4913 726 EEELDELQDRLEAAE 740
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
245-501 |
3.80e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 3.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 245 NSLTTELEQSKSEvRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQL----------KSAVEVTERrYH 314
Cdd:COG3206 81 SPLETQIEILKSR-PVLERVVDKLNLDEDPLGEEASREAAIERLRKNLTVEPVKGSNVieisytspdpELAAAVANA-LA 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 315 EEYIQSTLQIRTayEQVDEVKSGYAQREAELGEELKKTKAERDSLHER--LMDKEAKLRILVDENEILNSKIKEKEEVYL 392
Cdd:COG3206 159 EAYLEQNLELRR--EEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELA 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 393 NLE---NSLNQNEPEDTGELKKLESD--VMELRANLMDKEMELQSVMSQY-------ESLRSEMETMQSEKNKAIDEALA 460
Cdd:COG3206 237 EAEarlAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYtpnhpdvIALRAQIAALRAQLQQEAQRILA 316
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 15228082 461 KLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLK 501
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
71-500 |
4.26e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 4.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 71 KRTGKTPELA-SQISQLQEELKKAKEQLSASEALKKEaQDQAEETKQQLMEINASEDSRIDELRKLSQERDkaWQSELEA 149
Cdd:COG4717 60 KPQGRKPELNlKELKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLQLLP--LYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 150 MQRQhamdsaaLSSTMNEVQKLKAQLSEsenVENLRMELNETLSLVEKLRGELFDAKEGEAQAheivsgTEKQLEIANLT 229
Cdd:COG4717 137 LEAE-------LAELPERLEELEERLEE---LRELEEELEELEAELAELQEELEELLEQLSLA------TEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 230 LEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDE------------------------------------ 273
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkearlllliaaallallglggsllsliltiagvlf 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 274 ---------------ARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSgy 338
Cdd:COG4717 281 lvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE-- 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 339 AQREAELGEELKKTKAerdSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPE-DTGELKKLESDVM 417
Cdd:COG4717 359 LEEELQLEELEQEIAA---LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELlEALDEEELEEELE 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 418 ELRANLMDKEMELQSVMSQYESLRSEMETMqsEKNKAIDEALAKLGSLTEEADKSGKRAenATEQLGAAQVTNTELEAEL 497
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQL--EEDGELAELLQELEELKAELRELAEEW--AALKLALELLEEAREEYRE 511
|
...
gi 15228082 498 RRL 500
Cdd:COG4717 512 ERL 514
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-512 |
6.61e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 57 DRRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLS 136
Cdd:PTZ00121 1070 EGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAE 1149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 137 QERDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKA--------------QLSESENVENLR-----MELNETLSLVEK 197
Cdd:PTZ00121 1150 DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEvrkaeelrkaedarKAEAARKAEEERkaeeaRKAEDAKKAEAV 1229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 198 LRGELFDAKEGEAQAHEIVSGTE--KQLEIANLTLEMLRSDGMKMSEA--CNSLTTELEQSKSEVRSLEQLVRQLEE--- 270
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEeiRKFEEARMAHFARRQAAIKAEEArkADELKKAEEKKKADEAKKAEEKKKADEakk 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 271 EDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRyhEEYIQSTLQIRTAYEQVDEVKSGYAQREAelgEELK 350
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE--AEAAADEAEAAEEKAEAAEKKKEEAKKKA---DAAK 1384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 351 KtKAERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKlESDVMELRANLMDKEMEL 430
Cdd:PTZ00121 1385 K-KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK-KADEAKKKAEEAKKAEEA 1462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 431 QSvmSQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAE--NATEQLGAAQVTNTELEAELRRLKVQCDQWR 508
Cdd:PTZ00121 1463 KK--KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
|
....
gi 15228082 509 KAAE 512
Cdd:PTZ00121 1541 KAEE 1544
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
242-498 |
8.93e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 8.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 242 EACNSLTTELEQSKSEVRSLEQlvrQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERryheEYIQST 321
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEE---QREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER----EREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 322 LQIRTAYEQVDEVKSgyaqREAELGEELKKTKAERDSLHERLMDKEAKLRILVDEneilnskikeKEEVYLNLENSLNQN 401
Cdd:PRK02224 279 EEVRDLRERLEELEE----ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDR----------LEECRVAAQAHNEEA 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 402 EPEdTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEknkaIDEALAKLGSLTEEADKSGKRAENATE 481
Cdd:PRK02224 345 ESL-REDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE----IEELRERFGDAPVDLGNAEDFLEELRE 419
|
250
....*....|....*..
gi 15228082 482 QLGAAQVTNTELEAELR 498
Cdd:PRK02224 420 ERDELREREAELEATLR 436
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
75-369 |
1.05e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.52 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 75 KTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwqseleamqrqh 154
Cdd:COG1340 2 KTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDEL------------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 155 amdsaalsstMNEVQKLKAQLSESENVENlrmELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEmlr 234
Cdd:COG1340 70 ----------NEKVKELKEERDELNEKLN---ELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPE--- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 235 sDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERR-- 312
Cdd:COG1340 134 -EEKELVEKIKELEKELEKAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEad 212
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 15228082 313 -YHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAK 369
Cdd:COG1340 213 eLHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELEEKAE 270
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
82-445 |
2.94e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 82 QISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASedsrIDELRklSQERDkaWQSELEAMQR-----QHAM 156
Cdd:PRK04863 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEE----VDELK--SQLAD--YQQALDVQQTraiqyQQAV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 157 dsaalsstmnevqklkaQLSESENVENLRMELneTLSLVEKLRGElFDAKEGEAqaheivsgTEKQLEIANltlemlrsd 236
Cdd:PRK04863 421 -----------------QALERAKQLCGLPDL--TADNAEDWLEE-FQAKEQEA--------TEELLSLEQ--------- 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 237 GMKMSEACNSlttELEQSKSEVRSLEQLVRQLEEEDEARgnangdsSSVEELKEEINVARQEiSQLKSAVEVTERRYHEE 316
Cdd:PRK04863 464 KLSVAQAAHS---QFEQAYQLVRKIAGEVSRSEAWDVAR-------ELLRRLREQRHLAEQL-QQLRMRLSELEQRLRQQ 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 317 yiQSTLQIRTAYEQV--------DEVKSGYAQREAELgEELKKTKAERDSLHERLMDKEAKLRILVDENEIlnskikeKE 388
Cdd:PRK04863 533 --QRAERLLAEFCKRlgknlddeDELEQLQEELEARL-ESLSESVSEARERRMALRQQLEQLQARIQRLAA-------RA 602
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 15228082 389 EVYLNLENSLNQNEpEDTGELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEME 445
Cdd:PRK04863 603 PAWLAAQDALARLR-EQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALD 658
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
278-487 |
3.19e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 3.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 278 ANGDSSSVEELKEEINVARQEISQLKSAVEVTERRyHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERD 357
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKE-EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 358 SLHERLMDKEAKLRILVDE----------NEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKE 427
Cdd:COG4942 94 ELRAELEAQKEELAELLRAlyrlgrqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 428 MELQSVMSQYESLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQLGAAQ 487
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
78-283 |
3.57e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMD 157
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-EKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALSSTMNEVQKLKAQ------LSESENVENLRM---------ELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQ 222
Cdd:COG4942 103 KEELAELLRALYRLGRQpplallLSPEDFLDAVRRlqylkylapARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15228082 223 LEIANLTLEMLRSDGMKMSEACNS----LTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSS 283
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKelaeLAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
20-513 |
4.90e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 20 ASTPKTARKLKTSESDPVSSPNTKIRTPKTqsPKVVADRRSPRTPVNEIQKKRTGKT-PELASQISQLQEELKKAKEqls 98
Cdd:pfam15921 25 SSSPFFVSSIRGTIIENTSSTGTFTQIPIF--PKYEVELDSPRKIIAYPGKEHIERVlEEYSHQVKDLQRRLNESNE--- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 99 ASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERD---KAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQL 175
Cdd:pfam15921 100 LHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEdlrNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMM 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 176 SESENVenlrmelnetlslVEKLRGELFDAKEGEAQaheivsgteKQLEIANLTLEMLRSDGMKMSEACNSLTTE----- 250
Cdd:pfam15921 180 LSHEGV-------------LQEIRSILVDFEEASGK---------KIYEHDSMSTMHFRSLGSAISKILRELDTEisylk 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 251 ---------LEQSKSEVRSLEQLVRQlEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTE---RRYHEEYI 318
Cdd:pfam15921 238 grifpvedqLEALKSESQNKIELLLQ-QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQeqaRNQNSMYM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 319 QSTLQIRTAYEQVD----EVKSGYAQREAEL-------GEELKKTKAERDSLHERLMDKEAKLRILVDEneilnskiKEK 387
Cdd:pfam15921 317 RQLSDLESTVSQLRselrEAKRMYEDKIEELekqlvlaNSELTEARTERDQFSQESGNLDDQLQKLLAD--------LHK 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 388 EEVYLNLENSLNQN-EPEDTGELKKLEsdvmELRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKAI---DEALAKLG 463
Cdd:pfam15921 389 REKELSLEKEQNKRlWDRDTGNSITID----HLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIqgkNESLEKVS 464
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 15228082 464 SLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEA 513
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEA 514
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
291-516 |
4.91e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 4.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 291 EINVARQEISQLKSAVEVTERryheeyiqstlQIRTAYEQVDEVKSGYAqreaELGEELKKTKAERDSLHERLMDKEAKL 370
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQA-----------ELDALQAELEELNEEYN----ELQAELEALQAEIDKLQAEIAEAEAEI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 371 RILVDENEILNSKIKEKEEVYLNLENSLNQNEPED-----------TGELKKLESDVMELRANLMDKEMELQSVMSQYES 439
Cdd:COG3883 82 EERREELGERARALYRSGGSVSYLDVLLGSESFSDfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15228082 440 LRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAAEAAAT 516
Cdd:COG3883 162 LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
78-462 |
6.63e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEalkkEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAMD 157
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALSSTMNEVQKLKAQLSESENvENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDG 237
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLEN-ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLF 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 238 MKMSEACNSLTTELEQskSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVEVTERRYHEEY 317
Cdd:COG4717 291 LLLAREKASLGKEAEE--LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 318 IQSTLQIRTAYEQVDEvkSGYAQReAELGEELKKTKAERDSLHERLMDKEAKLRILVDEN--EILNSKIKEKEEVYLNLE 395
Cdd:COG4717 369 EQEIAALLAEAGVEDE--EELRAA-LEQAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELE 445
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15228082 396 ---NSLNQNEPEDTGELKKLESD--VMELRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKAIDEALAKL 462
Cdd:COG4717 446 eelEELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPV 517
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
67-439 |
7.29e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 7.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 67 EIQKKRTGKTPELASQI-SQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQS 145
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEIlEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKA 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 146 ELEAMQRqhamdsaALSSTMNEVQKLKAQLSESENVENLRMELNETlslVEKLRGELFDAKEGEAQAHEIVSGTEKQLEI 225
Cdd:TIGR00606 512 DLDRKLR-------KLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQ---IRKIKSRHSDELTSLLGYFPNKKQLEDWLHS 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 226 ANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSA 305
Cdd:TIGR00606 582 KSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGA 661
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 306 VEVterrYHEEYIQSTLQIRTAYEQVDEVksgyAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEILNSKIK 385
Cdd:TIGR00606 662 TAV----YSQFITQLTDENQSCCPVCQRV----FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP 733
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 15228082 386 EKEEVYLNLENSLnqnePEDTGELKKLESDVMELRANLMDKEMELQSVMSQYES 439
Cdd:TIGR00606 734 GRQSIIDLKEKEI----PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEES 783
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
249-514 |
9.48e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 9.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 249 TELEQSKSEVRSLEQLVRQLEEEDEARGNAngdsssvEELKEEINVARQEISQLKSAVEVTERRYHEEYIQstlQIRTAY 328
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAERY-------AAARERLAELEYLRAALRLWFAQRRLELLEAELE---ELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 329 EQVDEvksgyaqREAELGEELKKTKAERDSLHERLM----DKEAKLRILVDENEILNSKIKEKEEVYLNLENSLNQNEPE 404
Cdd:COG4913 305 ARLEA-------ELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 405 DTGELKKLESDVMELRANLMDKEMELQsvmsqyeSLRSEMETMQSEKNKAIDEALAKLGSLTEEADKSGKRAENATEQLG 484
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALE-------EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA 450
|
250 260 270
....*....|....*....|....*....|...
gi 15228082 485 AA-QVTNTELE--AELRRLKVQCDQWRKAAEAA 514
Cdd:COG4913 451 EAlGLDEAELPfvGELIEVRPEEERWRGAIERV 483
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
74-233 |
1.07e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 1.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 74 GKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEdsridELRKLSQERDKAwQSELEAMQRQ 153
Cdd:COG3206 212 EEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSP-----VIQQLRAQLAEL-EAELAELSAR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 154 HAMDSAALSSTMNEVQKLKAQLSE---------SENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIvsgtEKQLE 224
Cdd:COG3206 286 YTPNHPDVIALRAQIAALRAQLQQeaqrilaslEAELEALQAREASLQAQLAQLEARLAELPELEAELRRL----EREVE 361
|
....*....
gi 15228082 225 IANLTLEML 233
Cdd:COG3206 362 VARELYESL 370
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
78-307 |
1.20e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAMQRQHAmd 157
Cdd:PRK03918 536 KLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKE-- 613
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 saaLSSTMNEVQKLKAQLSESENvenlrmELNETLSLVEKLRGELfdakegeaqaheivsgTEKQLEIANLTLEMLRSDG 237
Cdd:PRK03918 614 ---LEREEKELKKLEEELDKAFE------ELAETEKRLEELRKEL----------------EELEKKYSEEEYEELREEY 668
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 238 MKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEISQLKSAVE 307
Cdd:PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
44-323 |
1.50e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 44 IRTPKTQSPKVVADRRSPRTPVNEIQKKRTGKTPELASQISQLqeELKKAKEQLSASEALKKeAQDQAEETKQQLMEINA 123
Cdd:pfam15921 588 MQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL--ELEKVKLVNAGSERLRA-VKDIKQERDQLLNEVKT 664
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 124 SEDsridELRKLSQErdkawqseLEAMQRQHAMDSAALSSTMNEvqklkaqlsesenvenLRMELNETLSLVEKLRGELF 203
Cdd:pfam15921 665 SRN----ELNSLSED--------YEVLKRNFRNKSEEMETTTNK----------------LKMQLKSAQSELEQTRNTLK 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 204 DAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQ-LVRQLEEEDEARGNANGDS 282
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQeLSTVATEKNKMAGELEVLR 796
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 15228082 283 SSVEELKEEinVARQEISQLKSAVEVTE-----RRYHEEYIQSTLQ 323
Cdd:pfam15921 797 SQERRLKEK--VANMEVALDKASLQFAEcqdiiQRQEQESVRLKLQ 840
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
180-515 |
1.60e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 180 NVENLRMELNETLSLveklRGELFDAKegeaqaheivsgteKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSE-- 257
Cdd:PRK04863 277 HANERRVHLEEALEL----RRELYTSR--------------RQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHln 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 258 ---------------VRSLEQLVRQLEEEDEARGNANGdssSVEELKEEINVARQEISQLKS-------AVEVTERRyhe 315
Cdd:PRK04863 339 lvqtalrqqekieryQADLEELEERLEEQNEVVEEADE---QQEENEARAEAAEEEVDELKSqladyqqALDVQQTR--- 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 316 eyiqsTLQIRTAYEQVDEVKS--GYAQREAE-LGEELKKTKAERDSLHERLMDKEAKLRIlvdeneilNSKIKEKEEVYL 392
Cdd:PRK04863 413 -----AIQYQQAVQALERAKQlcGLPDLTADnAEDWLEEFQAKEQEATEELLSLEQKLSV--------AQAAHSQFEQAY 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 393 NLENSLN-QNEPEDTGE-----LKKLESDVME------LRANLMDKEMELQSVMSQYESLR------SEMETMQSEKNKA 454
Cdd:PRK04863 480 QLVRKIAgEVSRSEAWDvarelLRRLREQRHLaeqlqqLRMRLSELEQRLRQQQRAERLLAefckrlGKNLDDEDELEQL 559
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15228082 455 IDEALAKLGSLTEEADKSGKRAENATEQLgaaqvtnTELEAELRRLKVQCDQWRKAAEAAA 515
Cdd:PRK04863 560 QEELEARLESLSESVSEARERRMALRQQL-------EQLQARIQRLAARAPAWLAAQDALA 613
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
78-503 |
1.84e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAK-------EQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSELEAM 150
Cdd:pfam15921 321 DLESTVSQLRSELREAKrmyedkiEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQN 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 151 QRQHAMDSA----------ALSSTMNEVQKLKAQLSESENVENLRMEL--------NETLSLVEKLRGELFDAKEGEAQA 212
Cdd:pfam15921 401 KRLWDRDTGnsitidhlrrELDDRNMEVQRLEALLKAMKSECQGQMERqmaaiqgkNESLEKVSSLTAQLESTKEMLRKV 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 213 HEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVE----EL 288
Cdd:pfam15921 481 VEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKlqmaEK 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 289 KEEINVARQEISQLKS----------AVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGE-ELKKTK---- 353
Cdd:pfam15921 561 DKVIEILRQQIENMTQlvgqhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDlELEKVKlvna 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 354 ------------AERDSLHERLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENSLN------QNEPEDT--------- 406
Cdd:pfam15921 641 gserlravkdikQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKmqlksaQSELEQTrntlksmeg 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 407 --------------------GELKKLESDVMELRANLMDKEMELQSVMSQYESLRSEMETMQSEKNKAIDEaLAKLGS-- 464
Cdd:pfam15921 721 sdghamkvamgmqkqitakrGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE-LEVLRSqe 799
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 15228082 465 --LTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQ 503
Cdd:pfam15921 800 rrLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
75-286 |
2.60e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 75 KTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKL--SQERDKAWQSELEA--- 149
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERarALYRSGGSVSYLDVllg 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 150 -------MQRQHAMD--SAALSSTMNEVQKLKAQLSESEnvENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTE 220
Cdd:COG3883 111 sesfsdfLDRLSALSkiADADADLLEELKADKAELEAKK--AELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLS 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15228082 221 KQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVE 286
Cdd:COG3883 189 AEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
61-312 |
2.77e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 61 PRTPVNEIQKKRTGKTPELA---SQISQLQEELKKAKEQLSASEALKKEA--------QDQAEETKQQLmeINASEDSR- 128
Cdd:PRK04863 835 PEAELRQLNRRRVELERALAdheSQEQQQRSQLEQAKEGLSALNRLLPRLnlladetlADRVEEIREQL--DEAEEAKRf 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 129 IDE----LRKLSQERDK--AWQSELEAMQRQHAMDSAALSST------MNEVQKLKAQLSESENVEnlrmELNETLSLVE 196
Cdd:PRK04863 913 VQQhgnaLAQLEPIVSVlqSDPEQFEQLKQDYQQAQQTQRDAkqqafaLTEVVQRRAHFSYEDAAE----MLAKNSDLNE 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 197 KLRGELFDAKEGEAQAHEIVSGTEKQLEIANLTLEMLRSdgmkmseacnSLTTELEQSKSEVRSLEQLVRQLEEEDEARG 276
Cdd:PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKS----------SYDAKRQMLQELKQELQDLGVPADSGAEERA 1058
|
250 260 270
....*....|....*....|....*....|....*.
gi 15228082 277 NANGDsssveELKEEINVARQEISQLKSAVEVTERR 312
Cdd:PRK04863 1059 RARRD-----ELHARLSANRSRRNQLEKQLTFCEAE 1089
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
78-476 |
2.96e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAwQSELEAMQRQHAMD 157
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL-LELLAELLEEAALL 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 158 SAALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEG-EAQAHEIVSGTEKQLEIANLTLEMLRSD 236
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVaVLIGVEAAYEAALEAALAAALQNIVVED 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 237 GMKMSEACNSLT-------TELEQSKSEVRSLEQ-------------LVRQLEEEDEARGNANGDSSSVEELKEEINVAR 296
Cdd:COG1196 556 DEVAAAAIEYLKaakagraTFLPLDKIRARAALAaalargaigaavdLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 297 QEISQLKSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDE 376
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 377 NEILNSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSV--------------MSQYESLRS 442
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLereiealgpvnllaIEEYEELEE 795
|
410 420 430
....*....|....*....|....*....|....
gi 15228082 443 EMETMQSEKNKaIDEALAKLGSLTEEADKSGKRA 476
Cdd:COG1196 796 RYDFLSEQRED-LEEARETLEEAIEEIDRETRER 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
353-518 |
3.79e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 353 KAER-DSLHERLMDKEAKLRILVDENeiLNSKIKEKEEVYLNLENSLNQNEpedtGELKKLESDVMELRANLMDKEMELQ 431
Cdd:COG1196 211 KAERyRELKEELKELEAELLLLKLRE--LEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 432 SVMSQYESLRSEMETMQSEknkaIDEALAKLGSLTEEADKSGKRAENATEQLGAAQVTNTELEAELRRLKVQCDQWRKAA 511
Cdd:COG1196 285 EAQAEEYELLAELARLEQD----IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
....*..
gi 15228082 512 EAAATML 518
Cdd:COG1196 361 AEAEEAL 367
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
78-355 |
4.59e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 40.01 E-value: 4.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 78 ELASQISQLQEELKKAKEQLSASEALKKEAQDQAEE---TKQQLMEINAS----EDSRIDELRKLSQERDKaWQSELEAM 150
Cdd:pfam05701 153 EYASLVSERDIAIKRAEEAVSASKEIEKTVEELTIEliaTKESLESAHAAhleaEEHRIGAALAREQDKLN-WEKELKQA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 151 QrqhamdsaalsstmNEVQKLKAQLSESENVEnlrMELNETLSLVEKLRGELFDAKEG---------------EAQAHEI 215
Cdd:pfam05701 232 E--------------EELQRLNQQLLSAKDLK---SKLETASALLLDLKAELAAYMESklkeeadgegnekktSTSIQAA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 216 VSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLvrqleeedeargnANGDSSSVEELKEEINVA 295
Cdd:pfam05701 295 LASAKKELEEVKANIEKAKDEVNCLRVAAASLRSELEKEKAELASLRQR-------------EGMASIAVSSLEAELNRT 361
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 296 RQEIsqlkSAVEVTERRYHEEYIQSTLQIRTAYEQVDEVKSgyAQREAElgEELKKTKAE 355
Cdd:pfam05701 362 KSEI----ALVQAKEKEAREKMVELPKQLQQAAQEAEEAKS--LAQAAR--EELRKAKEE 413
|
|
| PLN02829 |
PLN02829 |
Probable galacturonosyltransferase |
50-196 |
4.68e-03 |
|
Probable galacturonosyltransferase
Pssm-ID: 215443 [Multi-domain] Cd Length: 639 Bit Score: 39.83 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 50 QSPKVVADRRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASeALKKEAQdQAEETKQQLMEI-----NAS 124
Cdd:PLN02829 152 QQSAQTSEKVDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLP-ATKANPH-FTRELRLRIKEVqrvlgDAS 229
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15228082 125 EDSridELRKLSQERDKAWQSELeAMQRQHAMDSAalsstmNEVQKLKAQLSESEnvENLRMELNETLSLVE 196
Cdd:PLN02829 230 KDS---DLPKNANEKLKAMEQTL-AKGKQMQDDCS------IVVKKLRAMLHSAE--EQLRVHKKQTMFLTQ 289
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
129-359 |
5.75e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 129 IDELRKLSQERdkawQSELEAMQRQHAmdsaalsstmNEVQKLKAQLSE-SENVENLRMELNETLSLVEKLRGELFDAKe 207
Cdd:PHA02562 204 IEEQRKKNGEN----IARKQNKYDELV----------EEAKTIKAEIEElTDELLNLVMDIEDPSAALNKLNTAAAKIK- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 208 geaqaheivsgteKQLEIANLTLEMLRSDGMkmseaCNSLTTELEQSKSEVRSLE----QLVRQLEEEDEARGNangdss 283
Cdd:PHA02562 269 -------------SKIEQFQKVIKMYEKGGV-----CPTCTQQISEGPDRITKIKdklkELQHSLEKLDTAIDE------ 324
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15228082 284 sVEELKEEINVARQEISQLKSAVEvTERRYHEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSL 359
Cdd:PHA02562 325 -LEEIMDEFNEQSKKLLELKNKIS-TNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
82-304 |
7.11e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 82 QISQLQEELKKAKEQLSASEALkKEAQDQAEETKQQLMEINAsEDSRIDELRklSQERDKAWQSELEAMQRqhamdsaal 161
Cdd:COG4913 236 DLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEY-LRAALRLWF--AQRRLELLEAELEELRA--------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 162 sstmnEVQKLKAQLSEsenvenLRMELNETLSLVEKLRGELfdAKEGEAQAHEIvsgtEKQLEIANLTLEMLRSDGMKMS 241
Cdd:COG4913 303 -----ELARLEAELER------LEARLDALREELDELEAQI--RGNGGDRLEQL----EREIERLERELEERERRRARLE 365
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228082 242 EACNSLTTELEQSKSEVRSLEQLVRQL-----EEEDEARGNANGDSSSVEELKEEINVARQEISQLKS 304
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALlealeEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
67-415 |
7.57e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 67 EIQKKRTGKTPELASQISQLQEELKKAKEQLsasEALKKEAQDQAEETKQQLMEINASEDSRIDELRKLSQERDKAWQSE 146
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQE---LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 147 LEA------MQRQHAMDSAALSSTMNEVQKLKAQLSESENVENLRMELNETLSLVEKLRGELFDAKEGEAQAHEIVSGTE 220
Cdd:pfam02463 246 LRDeqeeieSSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 221 KQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEARGNANGDSSSVEELKEEINVARQEIS 300
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 301 QLKSAVEVTERryhEEYIQSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILVDENEIL 380
Cdd:pfam02463 406 EAQLLLELARQ---LEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKL 482
|
330 340 350
....*....|....*....|....*....|....*
gi 15228082 381 NSKIKEKEEVYLNLENSLNQNEPEDTGELKKLESD 415
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
79-431 |
7.71e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.55 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 79 LASQISQLQEELKKAKEQLSASEALKKEAQDQAEETKQQLmeiNASEDSrIDELRklSQERDkaWQSELEAMQRQHAMDS 158
Cdd:COG3096 345 QQEKIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARL---EAAEEE-VDSLK--SQLAD--YQQALDVQQTRAIQYQ 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 159 AALsstmNEVQKLKAQLSESEnvenlrmelnetLSlVEKLRGELFDAKEGEAQAHEIVSGTEKQLEIAnltlEMLRSDGM 238
Cdd:COG3096 417 QAV----QALEKARALCGLPD------------LT-PENAEDYLAAFRAKEQQATEEVLELEQKLSVA----DAARRQFE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 239 KMSEACNSLTTELEQSKSEVRSLEQLVRQLEEEDEArgnangdsSSVEELKEEINVARQEISQLKSAvevteRRYHEEYI 318
Cdd:COG3096 476 KAYELVCKIAGEVERSQAWQTARELLRRYRSQQALA--------QRLQQLRAQLAELEQRLRQQQNA-----ERLLEEFC 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 319 QSTLQIRTAYEQVDEVKSGYAQREAELGEELKKTKAERDSLHERLMDKEAKLRILvdeneilnskiKEKEEVYLNLENSL 398
Cdd:COG3096 543 QRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKEL-----------AARAPAWLAAQDAL 611
|
330 340 350
....*....|....*....|....*....|...
gi 15228082 399 NQNEpEDTGELKKLESDVMELRANLMDKEMELQ 431
Cdd:COG3096 612 ERLR-EQSGEALADSQEVTAAMQQLLEREREAT 643
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
125-506 |
7.89e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 39.17 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 125 EDSRIDELRKLSQERDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLKAQLSESENVENLRMELNEtlsLVEKLRgelfD 204
Cdd:PRK04863 294 ELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEE---LEERLE----E 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 205 AKEGEAQAHEIVSGTEKQLEIANLTLEMLRSDGMKMSEACNSLTTELEQSKSEVRSLEQlVRQLEEEDEArgNANGDSSS 284
Cdd:PRK04863 367 QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER-AKQLCGLPDL--TADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 285 VEELKEEINVARQEISQLKSAVEVTE--RRYHEEYIQSTLQIrtayeqVDEVKSGYAQREA-ELGEELKKTKAERDSLHE 361
Cdd:PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQaaHSQFEQAYQLVRKI------AGEVSRSEAWDVArELLRRLREQRHLAEQLQQ 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228082 362 ---RLMDKEAKLRILVDENEILNSKIKEKEEVYLNLENsLNQNEPEDTGELKKLESDVMELRANLMDKEMELQSVMSQYE 438
Cdd:PRK04863 518 lrmRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDE-LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15228082 439 SLRSemetmQSEKNKAIDEALAKLGSLTEEADKSGKRAENAT----EQLGAAQVTNTELEAELRRLKVQCDQ 506
Cdd:PRK04863 597 RLAA-----RAPAWLAAQDALARLREQSGEEFEDSQDVTEYMqqllERERELTVERDELAARKQALDEEIER 663
|
|
| |
