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Conserved domains on  [gi|253683544|ref|NP_258443|]
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POM121-like protein 2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
POM121 super family cl21092
POM121 family;
164-365 4.85e-38

POM121 family;


The actual alignment was detected with superfamily member pfam15229:

Pssm-ID: 464572 [Multi-domain]  Cd Length: 226  Bit Score: 142.11  E-value: 4.85e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 253683544   164 RECRKGKGRLEE-PLFPESLDSKRRSPE---TRPSAFKPLMKNGTLTSFVPRPGPLKRSLHSWGSDHSLTKRPNCSSMSS 239
Cdd:pfam15229    1 KESRKRTVKDEDgQSVTEGQDSKRRRPDssgSAQSAFRPLLANGVPSSFVPKPGPLKRGLHSKSSEDSLIKRSQTSSLSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 253683544   240 LasiyrggtlsSKRNAIGSSYSSCRNFSDPWKRSVPSVSF---------ETPEWPIKKEKS--CHRPSSPVPLVSDFESL 308
Cdd:pfam15229   81 C----------SKRNAITSSYSSTRGFPQLQKRSGPGASPlsspassrsQTPQRPAKKARSeeGHSSSSSASVKSDKEKQ 150
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 253683544   309 GG-------------------SESSGQQNQKIPQLPSSPENLVSEIPPPQLGYAVSDENLTLGKKAELQVSNNAGE 365
Cdd:pfam15229  151 PEkvadtpsgkkqnsrnspptSGSSRPRKRKIPLLPSRRGEPLTLPPPPQLGYRVTAEDLDLEKKAALQWINKVLE 226
 
Name Accession Description Interval E-value
POM121 pfam15229
POM121 family;
164-365 4.85e-38

POM121 family;


Pssm-ID: 464572 [Multi-domain]  Cd Length: 226  Bit Score: 142.11  E-value: 4.85e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 253683544   164 RECRKGKGRLEE-PLFPESLDSKRRSPE---TRPSAFKPLMKNGTLTSFVPRPGPLKRSLHSWGSDHSLTKRPNCSSMSS 239
Cdd:pfam15229    1 KESRKRTVKDEDgQSVTEGQDSKRRRPDssgSAQSAFRPLLANGVPSSFVPKPGPLKRGLHSKSSEDSLIKRSQTSSLSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 253683544   240 LasiyrggtlsSKRNAIGSSYSSCRNFSDPWKRSVPSVSF---------ETPEWPIKKEKS--CHRPSSPVPLVSDFESL 308
Cdd:pfam15229   81 C----------SKRNAITSSYSSTRGFPQLQKRSGPGASPlsspassrsQTPQRPAKKARSeeGHSSSSSASVKSDKEKQ 150
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 253683544   309 GG-------------------SESSGQQNQKIPQLPSSPENLVSEIPPPQLGYAVSDENLTLGKKAELQVSNNAGE 365
Cdd:pfam15229  151 PEkvadtpsgkkqnsrnspptSGSSRPRKRKIPLLPSRRGEPLTLPPPPQLGYRVTAEDLDLEKKAALQWINKVLE 226
 
Name Accession Description Interval E-value
POM121 pfam15229
POM121 family;
164-365 4.85e-38

POM121 family;


Pssm-ID: 464572 [Multi-domain]  Cd Length: 226  Bit Score: 142.11  E-value: 4.85e-38
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 253683544   164 RECRKGKGRLEE-PLFPESLDSKRRSPE---TRPSAFKPLMKNGTLTSFVPRPGPLKRSLHSWGSDHSLTKRPNCSSMSS 239
Cdd:pfam15229    1 KESRKRTVKDEDgQSVTEGQDSKRRRPDssgSAQSAFRPLLANGVPSSFVPKPGPLKRGLHSKSSEDSLIKRSQTSSLSS 80
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 253683544   240 LasiyrggtlsSKRNAIGSSYSSCRNFSDPWKRSVPSVSF---------ETPEWPIKKEKS--CHRPSSPVPLVSDFESL 308
Cdd:pfam15229   81 C----------SKRNAITSSYSSTRGFPQLQKRSGPGASPlsspassrsQTPQRPAKKARSeeGHSSSSSASVKSDKEKQ 150
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 253683544   309 GG-------------------SESSGQQNQKIPQLPSSPENLVSEIPPPQLGYAVSDENLTLGKKAELQVSNNAGE 365
Cdd:pfam15229  151 PEkvadtpsgkkqnsrnspptSGSSRPRKRKIPLLPSRRGEPLTLPPPPQLGYRVTAEDLDLEKKAALQWINKVLE 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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