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Conserved domains on  [gi|15830715|ref|NP_309488|]
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flagellar hook-filament junction protein [Escherichia coli O157:H7 str. Sakai]

Protein Classification

flagellar hook-associated protein FlgL( domain architecture ID 11483062)

flagellar hook-associated protein FlgL, together with FlgK, forms the junction between the hook and the filament in the flagellum and provides a structural base where flagellin, a filament-forming protein, is inserted for the initiation of filament elongation; similar to Escherichia coli FlgL (also known as HAP3)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgL PRK08027
flagellar hook-filament junction protein FlgL;
1-317 0e+00

flagellar hook-filament junction protein FlgL;


:

Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 590.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08027   1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNGDYVGGTESI 160
Cdd:PRK08027  81 SQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTDKAPFDEATGGYVGGTESI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  161 KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSL 240
Cdd:PRK08027 161 TQQVDAARSMVIGHTGDQIFDSITSNAVPEPDGSASETNLFAMLDSAIAALKTPVAGSDADKETAAAALDKTNRGLKNSL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830715  241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK 317
Cdd:PRK08027 241 NNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKAFTDMQGMSLFQLNR 317
 
Name Accession Description Interval E-value
flgL PRK08027
flagellar hook-filament junction protein FlgL;
1-317 0e+00

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 590.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08027   1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNGDYVGGTESI 160
Cdd:PRK08027  81 SQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTDKAPFDEATGGYVGGTESI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  161 KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSL 240
Cdd:PRK08027 161 TQQVDAARSMVIGHTGDQIFDSITSNAVPEPDGSASETNLFAMLDSAIAALKTPVAGSDADKETAAAALDKTNRGLKNSL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830715  241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK 317
Cdd:PRK08027 241 NNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKAFTDMQGMSLFQLNR 317
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-315 2.23e-112

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 327.77  E-value: 2.23e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715     2 RFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLS 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    82 QVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNG---DYVGGTE 158
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGgevTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   159 SIKQQVDASRSMVIGHTGDKIFDSITSNAvaepdgsaseTNLFAMLDSAIAALKTPVADSEADKETaaAALDKTNRGLKN 238
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNND----------KSVFSTGDDLIDALKKLEDALSSGDAK--AALSASLNDLDK 228

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830715   239 SLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQL 315
Cdd:TIGR02550 229 ALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDY 305
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-315 4.87e-61

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 194.70  E-value: 4.87e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:COG1344   1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFsevNGDYVGGTESI 160
Cdd:COG1344  81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPF---QVDYQGDAGQR 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715 161 KQQVDAsrsmvightgdkifdsitsnavaepdgsasetnlfamldsaiaalktpvadseadketaaaaldktnrgLKNSL 240
Cdd:COG1344 158 TAALGA---------------------------------------------------------------------LDAAL 168

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15830715 241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQL 315
Cdd:COG1344 169 DNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLSLLDL 243
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-141 8.35e-37

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 128.61  E-value: 8.35e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715     3 FSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQ 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15830715    83 VTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKT 141
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
 
Name Accession Description Interval E-value
flgL PRK08027
flagellar hook-filament junction protein FlgL;
1-317 0e+00

flagellar hook-filament junction protein FlgL;


Pssm-ID: 181202 [Multi-domain]  Cd Length: 317  Bit Score: 590.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08027   1 MRLSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNGDYVGGTESI 160
Cdd:PRK08027  81 SQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNLANTTDGNGRYIFAGYKTDKAPFDEATGGYVGGTESI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  161 KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSL 240
Cdd:PRK08027 161 TQQVDAARSMVIGHTGDQIFDSITSNAVPEPDGSASETNLFAMLDSAIAALKTPVAGSDADKETAAAALDKTNRGLKNSL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830715  241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK 317
Cdd:PRK08027 241 NNVLTVRAELGTQLNELESLDSLGSDRALGQKQQMSDLVDVDWNSAISSYVMQQAALQASYKAFTDMQGMSLFQLNR 317
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-315 2.23e-112

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 327.77  E-value: 2.23e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715     2 RFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLS 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    82 QVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNG---DYVGGTE 158
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGgevTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   159 SIKQQVDASRSMVIGHTGDKIFDSITSNAvaepdgsaseTNLFAMLDSAIAALKTPVADSEADKETaaAALDKTNRGLKN 238
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNND----------KSVFSTGDDLIDALKKLEDALSSGDAK--AALSASLNDLDK 228

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15830715   239 SLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQL 315
Cdd:TIGR02550 229 ALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQLSLFDY 305
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-314 9.35e-87

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 266.01  E-value: 9.35e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08870   1 MRISTAQMYQQSVNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFS-EVNGD--YVGGT 157
Cdd:PRK08870  81 GSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQSGTQPFAfDASGNvvYSGDQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  158 ESIKQQVDASRSMVIGHTGDKIFDSITS-------NAVAEPDGS------------------------------------ 194
Cdd:PRK08870 161 GQRQVQVADSVQVATNDPGDEVFMSVPNgggdyvpNANASNTGTgllgsasitdpsdpvngdtytitftdngaggtntyv 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  195 -------------------------------------------ASETNLFAMLDSAIAALKTPVaDSEADKETAAAALDK 231
Cdd:PRK08870 241 tdsstgtvvtaqaydagqpinfngvevqisgapaagdsftltpAPQASIFDTLDDAIAALESPV-STPAADAALQNALAQ 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  232 TNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLS 311
Cdd:PRK08870 320 ALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQAAQQAFSKVQSLS 399


                 ...
gi 15830715  312 LFQ 314
Cdd:PRK08870 400 LFN 402
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-315 2.85e-83

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 253.79  E-value: 2.85e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK07192   1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNG----DYVGG 156
Cdd:PRK07192  81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNTQPITFDAAggtyTYNGN 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  157 TESIKQQVDASRSMVIGHTGDKIFDsitsnavaepdgsASETNLFAMLDSAIAALKTPVADseADKETAAAALDKTNRGL 236
Cdd:PRK07192 161 SDQRQVQVGEGVQMPVNVTGQSVFQ-------------GGGLDVFNTLDKLIDLLETPALP--AADAALTAAVDEALGAI 225

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15830715  237 KNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQL 315
Cdd:PRK07192 226 DDALDNVLTVRTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEAAQKTFVKINSLSLFNL 304
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-315 4.87e-61

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 194.70  E-value: 4.87e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:COG1344   1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFsevNGDYVGGTESI 160
Cdd:COG1344  81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTPPF---QVDYQGDAGQR 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715 161 KQQVDAsrsmvightgdkifdsitsnavaepdgsasetnlfamldsaiaalktpvadseadketaaaaldktnrgLKNSL 240
Cdd:COG1344 158 TAALGA---------------------------------------------------------------------LDAAL 168

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15830715 241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQL 315
Cdd:COG1344 169 DNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQLSLLDL 243
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-300 2.99e-57

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 186.74  E-value: 2.99e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFsTQMMYQQNM-RGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESV 79
Cdd:PRK07701   1 MRV-TQNMLANNFlRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   80 LSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTdGNGRYIFAGYKTETAPFSEVNG--DYVGGT 157
Cdd:PRK07701  80 LDQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ-YNGRYIFNGTKTDTPPVTDDGDniENSTDS 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  158 ESIKQQVDASRSMVIGHTGDKIFDsitsnavaepDGSASETNLFAMLDSAIAALKTPvadseaDKETAAAALDKtnrgLK 237
Cdd:PRK07701 159 GDIEFEIAKGNTINVNVPGDKAFG----------GQSGGGSNLFEMLDNLENALDSG------DTQGVSNLLSD----ID 218

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15830715  238 NSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQAS 300
Cdd:PRK07701 219 QHIDNVLAVRAELGARSNRLELIENRLSDQEVNATKLLSDNEDVDLAEVITDLKTQENVYRAA 281
flgL PRK12718
flagellar hook-associated protein FlgL; Provisional
 1-317 3.29e-39

flagellar hook-associated protein FlgL; Provisional


Pssm-ID: 79176 [Multi-domain]  Cd Length: 510  Bit Score: 144.56  E-value: 3.29e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK12718   1 MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFS--------EVNGD 152
Cdd:PRK12718  81 QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSfdaatgkvTYNGD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  153 YvgGTESIkqQVDASRSMVIGHTGDKIFDSITSNAVAE------------------------------------------ 190
Cdd:PRK12718 161 L--GQRGI--QVDQSRLMSGGDVGSDIFNSVTSGTLAYiadagagnagtgqysavsfdgpragnyvgrdfrieftrdavt 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715      --------------------------------------------------------------------------------
Cdd:PRK12718 237 delqysvlsdppvvppeqplpanmpysegsvidmngvsiklsgqpeagdvftvetpkswkmgvqgdaantgsatltpvsl 316

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  191 PDG-------------------------------------------------------------------SASETNLFAM 203
Cdd:PRK12718 317 PDGltgknlsvaflddgaggllysvtstppdpslpanvpvkpgdvidigglkvkvdgqpaagdtyavttpKSANVDVFDT 396

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  204 LDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDW 283
Cdd:PRK12718 397 LNDLIGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKGLSYVKQLSDLEDVNI 476

                        490       500       510
                 ....*....|....*....|....*....|....
gi 15830715  284 NATISSYIMQQTALQASYKAFTDMQGLSLFQLNK 317
Cdd:PRK12718 477 YQATSDLLLRQVALQAASLALQRIQGNSLFSMGR 510
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-141 8.35e-37

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 128.61  E-value: 8.35e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715     3 FSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQ 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15830715    83 VTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKT 141
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
flgL PRK12717
flagellar hook-associated protein 3;
1-187 2.88e-31

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 122.54  E-value: 2.88e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK12717   1 MRISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEvNGD----YVGG 156
Cdd:PRK12717  81 TSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSDTPPYVR-NADgtysYQGD 159

                        170       180       190
                 ....*....|....*....|....*....|.
gi 15830715  157 TESIKQQVDASRSMVIGHTGDKIFDSITSNA 187
Cdd:PRK12717 160 QTQLSLQVGDTLNLAANDTGYSAFEQAVNTS 190
flgL PRK08073
flagellar hook-associated protein 3;
13-312 4.62e-25

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 101.98  E-value: 4.62e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   13 MRGITNSQAEWMK------------YGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08073   1 MRVSTFQNANWAKnqlmdlnvqqqyHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDgNGRYIFAGYKTETAPFSEvNGDYVGGTESI 160
Cdd:PRK08073  81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKE-QGRYVFGGDSAEKKPFTE-DGTYQGGTEDV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  161 KQQVDASRSMVIGHTGDkifdsitsnavaepdgsasetnlfAMLDSAIAALKTPVADSEADKETAAAALDKTNrglKNSL 240
Cdd:PRK08073 159 NWRLNDGYEVKAFRNGE------------------------ALLTPVINTLKKMVDAMQTGDQKALQPLLEEN---KKNL 211

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15830715  241 NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312
Cdd:PRK08073 212 DIIINRTTEVGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYINATYEATLKAVSTMSKTSI 283
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-173 3.73e-22

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 95.91  E-value: 3.73e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK06663   2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEVNGDYVGGTEsi 160
Cdd:PRK06663  82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGTKIDTEPFEVIRGNIKGLQG-- 159

                        170
                 ....*....|...
gi 15830715  161 kqqvDASRSMVIG 173
Cdd:PRK06663 160 ----DAGSNQIIG 168
flgL PRK08913
flagellin;
1-312 1.56e-15

flagellin;


Pssm-ID: 236349 [Multi-domain]  Cd Length: 301  Bit Score: 75.59  E-value: 1.56e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08913   3 MRVATFANSSQLIAAALRTQQTMASLQIQESSGLKSESFAGLGADAQQAVNLQVSVTRAQSYIDAATLAQSKVQVMYSAV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDraSLATDIQGLRDQLLNLANTTDGnGRYIFAGYKTETAPFsEVNGDYVGGT--- 157
Cdd:PRK08913  83 GQIADLAQQLRSSLSAASTGTSTDAT--SAAASAQQALTQLATLLNTQYG-GQYVFAGADTTTAPV-DLSSFAAGADsas 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  158 ---ESIKQQVDASRSMVIGHTGdKIFDSITSnavaepDGSASETNLFAMLDSAIAalktpvadSEADKETAAAALDKtnr 234
Cdd:PRK08913 159 sadTSYYQGDDTLTSVRVSATQ-GVSYGVTA------DNSAFEQLMRALMLVANS--------SSLSSSTLSQALDL--- 220

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15830715  235 gLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSL 312
Cdd:PRK08913 221 -ASTAVDDLGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLTASYSAISKMKSLNL 297
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 1-180 5.91e-15

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 75.63  E-value: 5.91e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK08412   1 MRVTFGSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGnGRYIFAGYKTETAPFSEvNGDYVGGTESI 160
Cdd:PRK08412  81 NEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLANTSIG-GEFLFSGSKVDTKPIDS-NGTYHGNDEDL 158

                        170       180
                 ....*....|....*....|
gi 15830715  161 KQQVDASRSMVIGHTGDKIF 180
Cdd:PRK08412 159 NALVGSGNLVPYNISGQELF 178
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
1-161 3.49e-12

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 66.91  E-value: 3.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVL 80
Cdd:PRK14692   1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDgNGRYIFAGYKTETAPFSEvNGDYVGGTESI 160
Cdd:PRK14692  81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLANTSV-NGQYLFAGSQVANKPFDS-NGNYYGDKNNI 158


                 .
gi 15830715  161 K 161
Cdd:PRK14692 159 N 159
flgL PRK06008
flagellar hook-associated family protein;
4-167 6.80e-07

flagellar hook-associated family protein;


Pssm-ID: 235669 [Multi-domain]  Cd Length: 348  Bit Score: 50.00  E-value: 6.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    4 STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVvnpsdDPIA-----ASQAVVLSQAQAQNSQYTLARTFATQKVSLEES 78
Cdd:PRK06008   7 STLALQNALRLTIAKLQAELSKAQTEATTGRYA-----DVGLslgskTARSVSLRREYDRLASLTDSNSLVTQRLTATQT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   79 VLSQVTTAIQNAQEKIVYASNgtlSDNDRASLATDIQGLRDQLLNLANTTDgNGRYIFAGYKTETAPFSevngDYVGGTE 158
Cdd:PRK06008  82 ALGQIIEAAQSFLNDLLAANS---SAQTAATVAQSARSALSSLTSTLNTSV-NGEYLFAGINTDVKPLT----DYGAPGS 153


                 ....*....
gi 15830715  159 SIKQQVDAS 167
Cdd:PRK06008 154 AAKTAVDTA 162
PRK08869 PRK08869
polar flagellin E;
7-138 1.64e-05

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 46.08  E-value: 1.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    7 MMYQQNMRGITNSQAEWMkygEQMSTGKRVVNPSDDpiAA---------SQAVVLSQA-QAQNSQYTLARTfatqkvslE 76
Cdd:PRK08869  11 MTAQRNLNGATSALSQSM---ERLSSGKRINSAKDD--AAglqisnrltTQIRGLDVAvRNANDGISIAQT--------A 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15830715   77 ESVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAG 138
Cdd:PRK08869  78 EGAMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNG 139
PRK12804 PRK12804
flagellin; Provisional
 28-300 7.68e-05

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 43.83  E-value: 7.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   28 EQMSTGKRVVNPSDDpiaASQAVVLSQAQAQNSQYTLARTFATQKVSL---EESVLSQVTTAIQNAQEKIVYASN-GTLS 103
Cdd:PRK12804  28 EKLSSGLKINRAGDD---AAGLAISEKMRGQIRGLEMASKNAQDGISLiqtAEGALTETHSILQRVRELVVQAGNtGTQD 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  104 DNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPfsevngdyVGGTESIKQQVDASRSMVIGHTGDKIfdSI 183
Cdd:PRK12804 105 GTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFKPAAP--------AAGTKSLTFQIGANAAQQLSVNIEAM--SA 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  184 TSNAVAEPDGSASETNLFAMLDsaiaalktpVADSEADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELE-SLDS 262
Cdd:PRK12804 175 DALGVKDTDGTLVTGKSVSDID---------VTKFANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNRLEhTINN 245

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15830715  263 LGSDrALGQTQQMSDLVDVDWNATISSYIMQQTALQAS 300
Cdd:PRK12804 246 LGAS-GENLTAAESRIRDVDMAKEMSEFTKNNILSQAS 282
PRK12803 PRK12803
flagellin; Provisional
 25-137 1.33e-03

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 40.18  E-value: 1.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   25 KYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSD 104
Cdd:PRK12803  25 KTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNEVEKVLVRMKELAVQSGNGTYSD 104

                         90       100       110
                 ....*....|....*....|....*....|...
gi 15830715  105 NDRASLATDIQGLRDQLLNLANTTDGNGRYIFA 137
Cdd:PRK12803 105 ADRGSIQIEIEQLTDEINRIADQAQYNQMHMLS 137
PRK12802 PRK12802
flagellin; Provisional
 29-300 1.38e-03

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 39.86  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   29 QMSTGKRVVNPSDDpiAASQAVVLSQAQAQNSQyTLARTFATQKVSL---EESVLSQVTTAIQNAQEKIVYASNGTLSDN 105
Cdd:PRK12802  31 RLSSGLKINSAKDD--AAGLQIATRQTSQIRGQ-TQAIKNANDGISIaqtAEGALQESTNILQRMRELAVQSRNDSNDST 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  106 DRASLATDIQGLRDQLLNLANTTDGNGRYIFAGyKTETAPFSevngdyVGGTESIKQQVDASRSMVIGHTGdkiFDSITS 185
Cdd:PRK12802 108 DRAALNKEFTTMLDEITRIATSTTLNGKNLLDG-SAGTMTFQ------VGANTGQSNQITFGLSASFDATG---LGVGSG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  186 NAVAEPDGSASETNlfamLDSAIAALKTpvadseadketaaaaldktnrglknSLNNVLTVRAELGTQLNELESLDSLGS 265
Cdd:PRK12802 178 TLITGADSAAAETN----AQAAITAIDA-------------------------ALQTINTTRADLGAAQNRLQSTISNLQ 228

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 15830715  266 DRALGQTQQMSDLVDVDWNATISSYIMQQTALQAS 300
Cdd:PRK12802 229 NINENASAARGRVQDTDFAAETAQLTKQQTLQQAS 263
PRK12805 PRK12805
FliC/FljB family flagellin;
1-131 2.71e-03

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 38.70  E-value: 2.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQaewmkygEQMSTGKRVVNPSDDpiaASQAVVLSQAQAQNSQYTLARTFATQKVSL---EE 77
Cdd:PRK12805   8 ISLKTQEYLRKNNEGMTQAQ-------ERLASGKRINSSLDD---AAGLAVVTRMNVKSTGLDAASKNSSMGIDLlqtAD 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15830715   78 SVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGN 131
Cdd:PRK12805  78 SALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYN 131
PRK12806 PRK12806
flagellin; Provisional
 4-138 2.86e-03

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 39.29  E-value: 2.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    4 STQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDpiaASQAVVLSQAQAQNSQYTLARTFATQKVSLE---ESVL 80
Cdd:PRK12806   6 NTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDD---AAGLAISQRMTAQIRGMNQAVRNANDGISLAqvaEGAM 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 15830715   81 SQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAG 138
Cdd:PRK12806  83 QETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDG 140
PRK12807 PRK12807
flagellin; Provisional
 1-256 6.81e-03

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 37.49  E-value: 6.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715    1 MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDpiaASQAVVLSQAQAQNSQYTLARTFATQKVSL---EE 77
Cdd:PRK12807   1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADD---AAGLAIATRMRARQSGLEKASQNTQDGMSLirtAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715   78 SVLSQVTTAIQNAQEKIVYASNGTLSDNDRASLATDIQGLRDQLLNLANTTDGNGRYIFAgykteTAPFSEVNGDYVGGT 157
Cdd:PRK12807  78 SAMNSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLA-----GTGAVTIGSTSISGA 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15830715  158 ESIKQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAmlDSAIAALKTPVADSEADKETAAAALDKTNRGLK 237
Cdd:PRK12807 153 EISIETLDSSATNQQITIKLANTTAEKLGIDATTSNISISGAASA--LAAISALNTALNTVAGNRATLGATLNRLDRNVE 230

                        250
                 ....*....|....*....
gi 15830715  238 NsLNNVLTVRAELGTQLNE 256
Cdd:PRK12807 231 N-LNNQATNMASAASQIED 248
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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