|
Name |
Accession |
Description |
Interval |
E-value |
| RapH_N |
pfam18801 |
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ... |
5-66 |
6.75e-24 |
|
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.
Pssm-ID: 436748 Cd Length: 62 Bit Score: 93.37 E-value: 6.75e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16077445 5 VIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLD 66
Cdd:pfam18801 1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
186-330 |
1.26e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 186 HFVFGVNLMDERNFEQAARHFKLALnmaqaEQKAQLVgRAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQA 265
Cdd:COG3914 115 LFNLGNLLLALGRLEEALAALRRAL-----ALNPDFA-EAYLNLGEALRRLGRLEEAIAALRRAL------ELDPDNAEA 182
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16077445 266 YFLITLIYYKQGKHDKASEYHKRGYEYAKetDDADYAVKFEFLQSLYLDQPNEEGIERCFQYLKN 330
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDP--DNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
221-295 |
1.23e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 1.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16077445 221 LVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSRIVNSLPQA--YFLITLIYYKQGKHDKASEYHKRGYEYAKE 295
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTAttLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
187-282 |
1.37e-03 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 38.03 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 187 FVFGVNLMDERNFEQAARHFKlalNMAQAEQKAQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSrivNSLPQAY 266
Cdd:TIGR02795 4 YDAALLVLKAGDYADAIQAFQ---AFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKS---PKAPDAL 77
|
90
....*....|....*.
gi 16077445 267 FLITLIYYKQGKHDKA 282
Cdd:TIGR02795 78 LKLGMSLQELGDKEKA 93
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
224-249 |
6.23e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 33.96 E-value: 6.23e-03
10 20
....*....|....*....|....*.
gi 16077445 224 RAYYNLGLCYYNQDLLDPAIDYFEKA 249
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| RapH_N |
pfam18801 |
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal ... |
5-66 |
6.75e-24 |
|
response regulator aspartate phosphatase H, N terminal; Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.
Pssm-ID: 436748 Cd Length: 62 Bit Score: 93.37 E-value: 6.75e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 16077445 5 VIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLD 66
Cdd:pfam18801 1 KIASEEVGAKINEWYSCIKKRDVEQAEILKEEVEQLLDEMEEDQDVLLYYSLVEFRHQLMLD 62
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
186-330 |
1.26e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.54 E-value: 1.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 186 HFVFGVNLMDERNFEQAARHFKLALnmaqaEQKAQLVgRAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQA 265
Cdd:COG3914 115 LFNLGNLLLALGRLEEALAALRRAL-----ALNPDFA-EAYLNLGEALRRLGRLEEAIAALRRAL------ELDPDNAEA 182
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 16077445 266 YFLITLIYYKQGKHDKASEYHKRGYEYAKetDDADYAVKFEFLQSLYLDQPNEEGIERCFQYLKN 330
Cdd:COG3914 183 LNNLGNALQDLGRLEEAIAAYRRALELDP--DNADAHSNLLFALRQACDWEVYDRFEELLAALAR 245
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
191-304 |
4.22e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 51.15 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 191 VNLMDERNFEQAARHFKLALnmaQAEQKAQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSRIVnslPQAYFLIT 270
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFL---KRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA---PDALLKLG 74
|
90 100 110
....*....|....*....|....*....|....
gi 16077445 271 LIYYKQGKHDKASEYHKrgyEYAKETDDADYAVK 304
Cdd:COG1729 75 LSYLELGDYDKARATLE---ELIKKYPDSEAAKE 105
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
149-351 |
5.81e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.39 E-value: 5.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 149 AEAYYYMKQTYFSLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAeqkaqlVGRAYYN 228
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYN 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 229 LGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFL 308
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERAL------ELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 16077445 309 QSLYLDQPNEEGIERCFQYLKNKNMYADIEDLALEVAKYYYEQ 351
Cdd:COG0457 190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLA 232
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
105-363 |
1.98e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 105 NFFRGMYEFDKrefisAITYYKQAekklsfVADHIERAEFYFKIAEAYYYMKQTYFSLINIKNAYEIYVEQETYNVRIIQ 184
Cdd:COG2956 50 NLYRRRGEYDR-----AIRIHQKL------LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 185 CHfvfgvnlMDERNFEQAARHFKLALNMAQAEqkaqlvGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSrivnslPQ 264
Cdd:COG2956 119 IY-------EQEGDWEKAIEVLERLLKLGPEN------AHAYCELAELYLEQGDYDEAIEALEKALKLDPDC------AR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 265 AYFLITLIYYKQGKHDKASEYHKRGYEYaketdDADYAVKFEFLQSLYLDQPNEEGIErcfQYLKNKNMYADIEDLALEV 344
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQ-----DPDYLPALPRLAELYEKLGDPEEAL---ELLRKALELDPSDDLLLAL 251
|
250
....*....|....*....
gi 16077445 345 AKYYYEQKWFKLSASYFLQ 363
Cdd:COG2956 252 ADLLERKEGLEAALALLER 270
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
193-293 |
6.02e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 6.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 193 LMDERNFEQAARHFKLALnmAQAEQKAQlvgrAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQAYFLITLI 272
Cdd:COG3914 88 LQALGRYEEALALYRRAL--ALNPDNAE----ALFNLGNLLLALGRLEEALAALRRAL------ALNPDFAEAYLNLGEA 155
|
90 100
....*....|....*....|.
gi 16077445 273 YYKQGKHDKASEYHKRGYEYA 293
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELD 176
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
164-367 |
1.17e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 164 NIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALnmAQAEQKAQlvgrAYYNLGLCYYNQDLLDPAI 243
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLL--ERDPDRAE----ALLELAQDYLKAGLLDRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 244 DYFEKAVSTFESSrivnslPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAvkfefLQSLYLDQPNEEGIER 323
Cdd:COG2956 97 ELLEKLLELDPDD------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE-----LAELYLEQGDYDEAIE 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 16077445 324 CFQYLKNKNmyADIEDLALEVAKYYYEQKWFKLSASYFLQVEEA 367
Cdd:COG2956 166 ALEKALKLD--PDCARALLLLAELYLEQGDYEEAIAALERALEQ 207
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
221-295 |
1.23e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 1.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16077445 221 LVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSRIVNSLPQA--YFLITLIYYKQGKHDKASEYHKRGYEYAKE 295
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTAttLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
149-291 |
1.30e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 149 AEAYYYMKQTYFSLINIKNAYEIY---VEQETYNVRIiqcHFVFGVNLMDERNFEQAARHFKLALNMAQAEQkaqlvgRA 225
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLekaLELDPDNPEA---FALLGEILLQLGDLDEAIVLLHEALELDPDEP------EA 74
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 16077445 226 YYNLGLCYYNQDLLDPAIDYFEKAVSTFESSrivnslPQAYFLITLIYYKQGKHDKASEYHKRGYE 291
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
184-288 |
7.09e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.84 E-value: 7.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 184 QCHFVFGVNLMDERNFEQAARHFKLALNMAQAEqkaqlvGRAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLP 263
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQAL------ELDPDDA 76
|
90 100
....*....|....*....|....*
gi 16077445 264 QAYFLITLIYYKQGKHDKASEYHKR 288
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDK 101
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
120-256 |
8.80e-05 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.85 E-value: 8.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 120 SAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYFSLINIKNAYEIYVEQETYNVRI------IQCHFVFGVNL 193
Cdd:COG3899 723 EALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHgnppasARAYANLGLLL 802
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 16077445 194 MdeRNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESS 256
Cdd:COG3899 803 L--GDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
186-300 |
9.37e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 186 HFVFGVNLMDERNFEQAARHFKLALNMAQAEqkaqlvGRAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQA 265
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDN------ADALLDLAEALLAAGDTEEAEELLERAL------ALDPDNPEA 87
|
90 100 110
....*....|....*....|....*....|....*
gi 16077445 266 YFLITLIYYKQGKHDKASEYhkrgYEYAKETDDAD 300
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAA----WQKLLALLPAD 118
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
187-370 |
1.16e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.56 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 187 FVFGVNLMDERNFEQAARHFKLALNMAQAEQkaqlvgRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSrivnslPQAY 266
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETV------EAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR------AEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 267 FLITLIYYKQGKHDKASEYhkrgYEYAKETDDADYAVKFEfLQSLYLDQPNEEGIERCFQYLKNKNmyADIEDLALEVAK 346
Cdd:COG2956 80 LELAQDYLKAGLLDRAEEL----LEKLLELDPDDAEALRL-LAEIYEQEGDWEKAIEVLERLLKLG--PENAHAYCELAE 152
|
170 180
....*....|....*....|....
gi 16077445 347 YYYEQKWFKLSASYFLQVEEARKQ 370
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPD 176
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
199-322 |
1.95e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 43.69 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 199 FEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAV-----STFESSRIVNSLPQAYFLITLIY 273
Cdd:COG3899 721 YAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALaaralAALAALRHGNPPASARAYANLGL 800
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 16077445 274 YKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQ--SLYLDQPNEEGIE 322
Cdd:COG3899 801 LLLGDYEEAYEFGELALALAERLGDRRLEARALFNLgfILHWLGPLREALE 851
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
190-364 |
2.38e-04 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 42.18 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 190 GVNLMDERNFEQAARHFKLALNMAQAEQKAQlvgRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSRivnSLPQAYFLI 269
Cdd:COG4105 39 AKEALEKGDYEKAIKLFEELEPRYPGSPYAE---QAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSP---NADYAYYLR 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 270 TLIYYKQGKHdkaseyHKRGYEYAKETDDAdyavkFEFLQSLYLDQPNEEGIERCFQYLKNKnmyadIEDLALEVAKYYY 349
Cdd:COG4105 113 GLSYYEQSPD------SDRDQTSTRKAIEA-----FQELINRYPDSEYAEDAKKRIDELRDK-----LARKELEVARYYL 176
|
170
....*....|....*
gi 16077445 350 EQKWFKLSASYFLQV 364
Cdd:COG4105 177 KRGAYVAAINRFQNV 191
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
136-299 |
7.05e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 7.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 136 ADHIERAEFYFKIAEAYYYMKQTYFSLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFK--LALNMA 213
Cdd:COG4785 26 LAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDqaLELDPD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 214 QAEqkaqlvgrAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYA 293
Cdd:COG4785 106 LAE--------AYNNRGLAYLLLGDYDAALEDFDRAL------ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELD 171
|
....*.
gi 16077445 294 KETDDA 299
Cdd:COG4785 172 PNDPER 177
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
193-288 |
7.15e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 193 LMDERNFEQAARHFKLALNMAQAEqkaqlvGRAYYNLGLCYYNQDLLDPAIDyFEKAVstfessRIVNSLPQAYFLITLI 272
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDN------ADALNNLGLLLLEQGRYDEAIA-LEKAL------KLDPNNAEALLNLAEL 68
|
90
....*....|....*.
gi 16077445 273 YYKQGKHDKASEYHKR 288
Cdd:COG3063 69 LLELGDYDEALAYLER 84
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
193-291 |
8.11e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.56 E-value: 8.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 193 LMDERNFEQAARHFKLALNMAQAEqkaqlvGRAYYNLGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQAYFLITLI 272
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNN------PELYYNLALLYSRSGDKDEAKEYYEKAL------ALSPDNPNAYSNLAAL 131
|
90
....*....|....*....
gi 16077445 273 YYKQGKHDKASEYHKRGYE 291
Cdd:COG5010 132 LLSLGQDDEAKAALQRALG 150
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
189-255 |
9.28e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 9.28e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 16077445 189 FGVNLMDERNFEQAARHFKLALNMAQAEQKAQ--LVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFES 255
Cdd:pfam13424 9 LAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
187-282 |
1.37e-03 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 38.03 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 187 FVFGVNLMDERNFEQAARHFKlalNMAQAEQKAQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAVSTFESSrivNSLPQAY 266
Cdd:TIGR02795 4 YDAALLVLKAGDYADAIQAFQ---AFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKS---PKAPDAL 77
|
90
....*....|....*.
gi 16077445 267 FLITLIYYKQGKHDKA 282
Cdd:TIGR02795 78 LKLGMSLQELGDKEKA 93
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
224-251 |
1.55e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.55e-03
10 20
....*....|....*....|....*...
gi 16077445 224 RAYYNLGLCYYNQDLLDPAIDYFEKAVS 251
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALE 29
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
193-250 |
2.58e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 2.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 16077445 193 LMDERNFEQAARHFKLALnmaQAEQKAQLVGRAYYNLGLCYYNQDLLDPAIDYFEKAV 250
Cdd:pfam13432 7 ALRAGDYDDAAAALEAAL---ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
149-288 |
4.75e-03 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 38.09 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 149 AEAYYYMKQTyfSLINIKNAYEIYVEQETYNVRIiqcHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAqlvgRAYYN 228
Cdd:TIGR02521 70 ALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV---LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPA----RSLEN 140
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 16077445 229 LGLCYYNQDLLDPAIDYFEKAVstfessRIVNSLPQAYFLITLIYYKQGKHDKASEYHKR 288
Cdd:TIGR02521 141 AGLCALKAGDFDKAEKYLTRAL------QIDPQRPESLLELAELYYLRGQYKDARAYLER 194
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
224-249 |
6.23e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 33.96 E-value: 6.23e-03
10 20
....*....|....*....|....*.
gi 16077445 224 RAYYNLGLCYYNQDLLDPAIDYFEKA 249
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27
|
|
| |
