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Conserved domains on  [gi|16077924|ref|NP_388738|]
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factor for peptide SdpC immunity [Bacillus subtilis subsp. subtilis str. 168]

Protein Classification

SdpI family protein( domain architecture ID 10613949)

SdpI family protein similar to Bacillus subtilis SdpI, an integral membrane protein that protects toxin-producing cells from being killed

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 25-68 6.01e-12

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


:

Pssm-ID: 463940  Cd Length: 71  Bit Score: 56.03  E-value: 6.01e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 16077924    25 INSVYGYRTRRSMSDQRLWNEANRYSASLMILSGLVIAGMGLLL 68
Cdd:pfam13630   4 INYFVGIRTPWTLKSEETWKKAHRLAGKLWIIAGLLLLILALLL 47
 
Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 25-68 6.01e-12

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


Pssm-ID: 463940  Cd Length: 71  Bit Score: 56.03  E-value: 6.01e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 16077924    25 INSVYGYRTRRSMSDQRLWNEANRYSASLMILSGLVIAGMGLLL 68
Cdd:pfam13630   4 INYFVGIRTPWTLKSEETWKKAHRLAGKLWIIAGLLLLILALLL 47
 
Name Accession Description Interval E-value
SdpI pfam13630
SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. ...
 25-68 6.01e-12

SdpI/YfhL protein family; This family of proteins includes the SdpI and YfhL proteins from B. subtilis. The SdpI protein is a multipass integral membrane protein that protects toxin-producing cells from being killed. Killing is mediated by the exported toxic protein SdpC an extracellular protein that induces the synthesis of an immunity protein.


Pssm-ID: 463940  Cd Length: 71  Bit Score: 56.03  E-value: 6.01e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 16077924    25 INSVYGYRTRRSMSDQRLWNEANRYSASLMILSGLVIAGMGLLL 68
Cdd:pfam13630   4 INYFVGIRTPWTLKSEETWKKAHRLAGKLWIIAGLLLLILALLL 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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