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Conserved domains on  [gi|16078327|ref|NP_389144|]
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phage PBSX; conserved hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]

Protein Classification

YqbH/XkdH family protein( domain architecture ID 10573563)

YqbH/XkdH family protein is a DUF3599 domain-containing protein; similar to Bacillus subtilis phage-like element PBSX protein XkdH and uncharacterized protein YqbH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3599 pfam12206
Domain of unknown function (DUF3599); This family of proteins is found in bacteria. Proteins ...
 2-116 3.10e-72

Domain of unknown function (DUF3599); This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length. This domain is the phage-like element pbsx protein xkdh.


:

Pssm-ID: 403432  Cd Length: 115  Bit Score: 210.48  E-value: 3.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16078327     2 SYRQMLIHRCDIYHEAAQAPSAGRFGIPADRLQPVISYPDTPDEQDVPCYFTEKTQQLIQEEPDQTVYHSFLVHFPLSAD 81
Cdd:pfam12206   1 SYQSLLTDRCDIYHLEENQAEAGRFGIPADDLQPVYSYPDTPDLQNVPCYFTEKSQSLVQEEPNVVIYQSFLVHFPLNAD 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 16078327    82 IRVNDKIIWENHKYILKLPKRIRHHHWEVVAVRDE 116
Cdd:pfam12206  81 IRLNDKIVWNGTSYKLQQPRNIRGHHIEVTAVRDE 115
 
Name Accession Description Interval E-value
DUF3599 pfam12206
Domain of unknown function (DUF3599); This family of proteins is found in bacteria. Proteins ...
 2-116 3.10e-72

Domain of unknown function (DUF3599); This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length. This domain is the phage-like element pbsx protein xkdh.


Pssm-ID: 403432  Cd Length: 115  Bit Score: 210.48  E-value: 3.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16078327     2 SYRQMLIHRCDIYHEAAQAPSAGRFGIPADRLQPVISYPDTPDEQDVPCYFTEKTQQLIQEEPDQTVYHSFLVHFPLSAD 81
Cdd:pfam12206   1 SYQSLLTDRCDIYHLEENQAEAGRFGIPADDLQPVYSYPDTPDLQNVPCYFTEKSQSLVQEEPNVVIYQSFLVHFPLNAD 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 16078327    82 IRVNDKIIWENHKYILKLPKRIRHHHWEVVAVRDE 116
Cdd:pfam12206  81 IRLNDKIVWNGTSYKLQQPRNIRGHHIEVTAVRDE 115
 
Name Accession Description Interval E-value
DUF3599 pfam12206
Domain of unknown function (DUF3599); This family of proteins is found in bacteria. Proteins ...
 2-116 3.10e-72

Domain of unknown function (DUF3599); This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length. This domain is the phage-like element pbsx protein xkdh.


Pssm-ID: 403432  Cd Length: 115  Bit Score: 210.48  E-value: 3.10e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16078327     2 SYRQMLIHRCDIYHEAAQAPSAGRFGIPADRLQPVISYPDTPDEQDVPCYFTEKTQQLIQEEPDQTVYHSFLVHFPLSAD 81
Cdd:pfam12206   1 SYQSLLTDRCDIYHLEENQAEAGRFGIPADDLQPVYSYPDTPDLQNVPCYFTEKSQSLVQEEPNVVIYQSFLVHFPLNAD 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 16078327    82 IRVNDKIIWENHKYILKLPKRIRHHHWEVVAVRDE 116
Cdd:pfam12206  81 IRLNDKIVWNGTSYKLQQPRNIRGHHIEVTAVRDE 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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