NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|16079523|ref|NP_390347|]
View 

component of the DNA transport pilin platform [Bacillus subtilis subsp. subtilis str. 168]

Protein Classification

ComGG domain-containing protein( domain architecture ID 10624463)

ComGG domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ComGG pfam14173
ComG operon protein 7; This family is required for DNA-binding during transformation of ...
 30-124 7.96e-27

ComG operon protein 7; This family is required for DNA-binding during transformation of competent bacterial cells.


:

Pssm-ID: 372946  Cd Length: 95  Bit Score: 95.12  E-value: 7.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16079523    30 YISRCMFEKETKELYIGENLLQNGVLLSIRHVLEERK-GQEGTQQFLYGRVSYYIHDTSiKEQKEINLRVSTDSGTERTA 108
Cdd:pfam14173   1 YLTEKRFAEETKQIYKLDYLLQNGVKDVKRHLASTEEnQQTGVFQFEEGRVTYSIVDED-QTLARISLTAELNSGLRRSA 79

                          90
                  ....*....|....*.
gi 16079523   109 QIVFDQKQKKLLRWTE 124
Cdd:pfam14173  80 QFVYDLPTGKIIEWTE 95
 
Name Accession Description Interval E-value
ComGG pfam14173
ComG operon protein 7; This family is required for DNA-binding during transformation of ...
 30-124 7.96e-27

ComG operon protein 7; This family is required for DNA-binding during transformation of competent bacterial cells.


Pssm-ID: 372946  Cd Length: 95  Bit Score: 95.12  E-value: 7.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16079523    30 YISRCMFEKETKELYIGENLLQNGVLLSIRHVLEERK-GQEGTQQFLYGRVSYYIHDTSiKEQKEINLRVSTDSGTERTA 108
Cdd:pfam14173   1 YLTEKRFAEETKQIYKLDYLLQNGVKDVKRHLASTEEnQQTGVFQFEEGRVTYSIVDED-QTLARISLTAELNSGLRRSA 79

                          90
                  ....*....|....*.
gi 16079523   109 QIVFDQKQKKLLRWTE 124
Cdd:pfam14173  80 QFVYDLPTGKIIEWTE 95
 
Name Accession Description Interval E-value
ComGG pfam14173
ComG operon protein 7; This family is required for DNA-binding during transformation of ...
 30-124 7.96e-27

ComG operon protein 7; This family is required for DNA-binding during transformation of competent bacterial cells.


Pssm-ID: 372946  Cd Length: 95  Bit Score: 95.12  E-value: 7.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16079523    30 YISRCMFEKETKELYIGENLLQNGVLLSIRHVLEERK-GQEGTQQFLYGRVSYYIHDTSiKEQKEINLRVSTDSGTERTA 108
Cdd:pfam14173   1 YLTEKRFAEETKQIYKLDYLLQNGVKDVKRHLASTEEnQQTGVFQFEEGRVTYSIVDED-QTLARISLTAELNSGLRRSA 79

                          90
                  ....*....|....*.
gi 16079523   109 QIVFDQKQKKLLRWTE 124
Cdd:pfam14173  80 QFVYDLPTGKIIEWTE 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH