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Conserved domains on  [gi|16130324|ref|NP_416893|]
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Mn(2(+))/Fe(2(+)): H(+) symporter MntH [Escherichia coli str. K-12 substr. MG1655]

Protein Classification

divalent metal cation transporter( domain architecture ID 10011492)

divalent metal cation transporter belonging to the NRAMP family, similar to the Escherichia coli MntH, which transports ions such as Mn2+ or Fe2+ across the cellular membrane

Gene Ontology:  GO:0046872|GO:0030001

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-412 0e+00

divalent metal cation transporter MntH;


:

Pssm-ID: 234815  Cd Length: 439  Bit Score: 605.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    1 MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKN 80
Cdd:PRK00701  16 EVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRD 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   81 LAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL 160
Cdd:PRK00701  96 LAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  161 LLFVAAAYIVELIFSQPNLAQLGKGMV--IPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQH----LHGGSRQQRYSA 234
Cdd:PRK00701 176 LLVIAAAFIVELFLAQPDWAAVLKGFIpsSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTrvvgRTGEEKREALRF 255
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  235 TKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVM 314
Cdd:PRK00701 256 TRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIVM 335
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  315 QGFIRFHIPLWVRRTVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQ 388
Cdd:PRK00701 336 EGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKI 415
                        410       420
                 ....*....|....*....|....
gi 16130324  389 TGWVIVVLVVALNIWLLVGTALGL 412
Cdd:PRK00701 416 IAWIIAVLIVALNIYLLYQTFTGL 439
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-412 0e+00

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 605.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    1 MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKN 80
Cdd:PRK00701  16 EVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRD 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   81 LAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL 160
Cdd:PRK00701  96 LAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  161 LLFVAAAYIVELIFSQPNLAQLGKGMV--IPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQH----LHGGSRQQRYSA 234
Cdd:PRK00701 176 LLVIAAAFIVELFLAQPDWAAVLKGFIpsSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTrvvgRTGEEKREALRF 255
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  235 TKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVM 314
Cdd:PRK00701 256 TRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIVM 335
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  315 QGFIRFHIPLWVRRTVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQ 388
Cdd:PRK00701 336 EGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKI 415
                        410       420
                 ....*....|....*....|....
gi 16130324  389 TGWVIVVLVVALNIWLLVGTALGL 412
Cdd:PRK00701 416 IAWIIAVLIVALNIYLLYQTFTGL 439
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
38-384 9.95e-125

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 364.58  E-value: 9.95e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    38 FATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAA 117
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   118 IGFKLILGVSLLQGAVLTGIATFLILMlQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAV 197
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLVLLLLF-QKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLVVPSFPGSGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   198 FLAAGVLGATIMPHVIYLHSSLTQ----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLD 273
Cdd:pfam01566 160 LLAVGILGATVMPHNLFLHSSLVQergwTIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGSGGIDVATLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   274 EAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILMGLDPT--R 347
Cdd:pfam01566 240 DAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITraiaFYPALAVILLGGAPGvvQ 319
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 16130324   348 ILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSK 384
Cdd:pfam01566 320 LLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNSR 356
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
9-411 1.89e-122

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 360.61  E-value: 1.89e-122
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   9 SSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDH 88
Cdd:COG1914   1 PRKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRER 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  89 YPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMlqRRGQKPLEKVIGGLLLFVAAAY 168
Cdd:COG1914  81 LGRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAF 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324 169 IVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHlHGGSRQQRYSATKWDVAIAMTIAGF 248
Cdd:COG1914 159 VVTAFLAHPDWGEVAKGTLVPSLPGSGSLLLAIAILGATVMPYNLFLHSSLVQE-KGWTGKEDLRYARLDTVVGMLLAGL 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324 249 VNLAMMATAAAAFHFSGHtGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVR- 327
Cdd:COG1914 238 VNLAILLLAAAVLHGTGI-GVDSAAQAAQALEPLLGEWAAILFALGLLAAGFSSTITATLAGAYVMAGFLGWRIGLWLRr 316
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324 328 -----RTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNI 402
Cdd:COG1914 317 fylvtRLLTLIGALIVLLLGGDPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRWLNVLGWLIVLLIVVLNL 396

                ....*....
gi 16130324 403 WLLVGTALG 411
Cdd:COG1914 397 YLLVSTLFG 405
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
19-377 2.08e-103

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 311.66  E-value: 2.08e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    19 LALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYW 98
Cdd:TIGR01197   4 WAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLW 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    99 VQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPN 178
Cdd:TIGR01197  84 ILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   179 LAQLGKGMVIPSLP--TSEAVFLAAGVLGATIMPHVIYLHSSLTQ-HLHGGSRQQRYSATKW-----------------D 238
Cdd:TIGR01197 164 QVKVLFGGFVPSCAvfGTDGLLQAVGILGATVMPHSLYLHSALVQsRLVDRDVKEGVSEANMyrpieaaialsvsfsinE 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   239 VAIAM-TIAGFVNLAMMATAAAAFHFS-GHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQG 316
Cdd:TIGR01197 244 FVIALfTAALFVNTNILVVAGATLFNSnNNADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130324   317 FIRFHIPLWVRRTVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLM 377
Cdd:TIGR01197 324 FLNWRWSPWLRRLITraiaIIPCLLVAAFGgrEGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
23-376 2.56e-90

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 278.48  E-value: 2.56e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYpRPVVWFYWVQAE 102
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  103 IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL--LLFVAAAYIVELIFSQPNLA 180
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKvgLLVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  181 QLGKGMVIPSLPTSE--AVFLA----AGVLGATIMPHVIYLHSS----------LTQHLHG-----GSRQQRYSATK--- 236
Cdd:NF037982 160 ALGAGVLFPQLPDGDlfAVLLGaiafAGAGGAQNMVQSNWLRDKgfgmgshvprLTSRVTGeteaePSTGYMFPTDEenl 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  237 -----------WDVAIAMTIAGFVNLAMMATAAA-AFHFSGH--TGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSS 302
Cdd:NF037982 240 arwrgwwrvanFDQLIAFWLIGFINISMLSVLAAaTFFGSGSlaNDVAFLDVEGQTLAALVGPWFGTLFWLGGAASGLSS 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  303 TV-----VGTLAGQVVMQGFIRF-------HIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIaLALVPLLIF 370
Cdd:NF037982 320 ALgivdyVSRLAADVVKQGFLGGasrwsesRIYLYLVWGLTMFGIVILLAGGDQPLVLLVISAVLLGFGM-FAYSILLLL 398

                 ....*.
gi 16130324  371 TSDSKL 376
Cdd:NF037982 399 LNRRRL 404
 
Name Accession Description Interval E-value
PRK00701 PRK00701
divalent metal cation transporter MntH;
1-412 0e+00

divalent metal cation transporter MntH;


Pssm-ID: 234815  Cd Length: 439  Bit Score: 605.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    1 MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKN 80
Cdd:PRK00701  16 EVNGSVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRD 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   81 LAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL 160
Cdd:PRK00701  96 LAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  161 LLFVAAAYIVELIFSQPNLAQLGKGMV--IPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQH----LHGGSRQQRYSA 234
Cdd:PRK00701 176 LLVIAAAFIVELFLAQPDWAAVLKGFIpsSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTrvvgRTGEEKREALRF 255
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  235 TKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVM 314
Cdd:PRK00701 256 TRIDSAIALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQIVM 335
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  315 QGFIRFHIPLWVRRTVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQ 388
Cdd:PRK00701 336 EGFLRLRIPLWVRRLITrglaMVPALIVILLGgeLDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKI 415
                        410       420
                 ....*....|....*....|....
gi 16130324  389 TGWVIVVLVVALNIWLLVGTALGL 412
Cdd:PRK00701 416 IAWIIAVLIVALNIYLLYQTFTGL 439
Nramp pfam01566
Natural resistance-associated macrophage protein; The natural resistance-associated macrophage ...
38-384 9.95e-125

Natural resistance-associated macrophage protein; The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals. The yeast proteins Smf1 and Smf2 may also transport divalent cations.


Pssm-ID: 426327 [Multi-domain]  Cd Length: 356  Bit Score: 364.58  E-value: 9.95e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    38 FATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAEIIAMATDLAEFIGAA 117
Cdd:pfam01566   1 WATDIQAGARFGYSLLWVLLLSNLMAILLQELSARLGLVTGKGLAELIRERFPRKVSWLLWILAELAIIATDLAEVIGGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   118 IGFKLILGVSLLQGAVLTGIATFLILMlQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAV 197
Cdd:pfam01566  81 IALNLLFGIPLWIGVLITAVLVLLLLF-QKGGYRKLEKVIIGLVLVIALSFIAELFLVKPDWGAVAAGLVVPSFPGSGSL 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   198 FLAAGVLGATIMPHVIYLHSSLTQ----HLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLD 273
Cdd:pfam01566 160 LLAVGILGATVMPHNLFLHSSLVQergwTIDRDEEDEALRYSRIDTIIALIVAGLVNAAILIVAAAAFHGSGGIDVATLA 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   274 EAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVT----MLPSFIVILMGLDPT--R 347
Cdd:pfam01566 240 DAAAALEPLLGKAAAVLFALGLLAAGLSSTITGTLAGQYVMEGFLGWRIPLWLRRLITraiaFYPALAVILLGGAPGvvQ 319
                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 16130324   348 ILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSK 384
Cdd:pfam01566 320 LLVLSQVVLSLQLPFALIPLLLLTSDRKLMGEFVNSR 356
MntH COG1914
Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];
9-411 1.89e-122

Mn2+ or Fe2+ transporter, NRAMP family [Inorganic ion transport and metabolism];


Pssm-ID: 441518 [Multi-domain]  Cd Length: 405  Bit Score: 360.61  E-value: 1.89e-122
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   9 SSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDH 88
Cdd:COG1914   1 PRKRSRLRRLLALLGPGLLVAAAYIDPGNLATYTQAGAQFGYSLLWVILLSNLLAIVLQEMSARLGIVTGKGLAELIRER 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  89 YPRPVVWFYWVQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMlqRRGQKPLEKVIGGLLLFVAAAY 168
Cdd:COG1914  81 LGRWLGWLLLILLELANLATDAAEIAGAALALNLLFGIPLLLGAVITALLAILLLL--RGGYRRLERVLKVLVALMLLAF 158
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324 169 IVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSSLTQHlHGGSRQQRYSATKWDVAIAMTIAGF 248
Cdd:COG1914 159 VVTAFLAHPDWGEVAKGTLVPSLPGSGSLLLAIAILGATVMPYNLFLHSSLVQE-KGWTGKEDLRYARLDTVVGMLLAGL 237
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324 249 VNLAMMATAAAAFHFSGHtGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVR- 327
Cdd:COG1914 238 VNLAILLLAAAVLHGTGI-GVDSAAQAAQALEPLLGEWAAILFALGLLAAGFSSTITATLAGAYVMAGFLGWRIGLWLRr 316
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324 328 -----RTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWVIVVLVVALNI 402
Cdd:COG1914 317 fylvtRLLTLIGALIVLLLGGDPVKLLVLSQVLNGLLLPFALIPLLLLTNDKDLMGEYRNGRWLNVLGWLIVLLIVVLNL 396

                ....*....
gi 16130324 403 WLLVGTALG 411
Cdd:COG1914 397 YLLVSTLFG 405
nramp TIGR01197
NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model ...
19-377 2.08e-103

NRAMP (natural resistance-associated macrophage protein) metal ion transporters; This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 162246  Cd Length: 390  Bit Score: 311.66  E-value: 2.08e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    19 LALMGPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYW 98
Cdd:TIGR01197   4 WAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRITLW 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324    99 VQAEIIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGLLLFVAAAYIVELIFSQPN 178
Cdd:TIGR01197  84 ILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   179 LAQLGKGMVIPSLP--TSEAVFLAAGVLGATIMPHVIYLHSSLTQ-HLHGGSRQQRYSATKW-----------------D 238
Cdd:TIGR01197 164 QVKVLFGGFVPSCAvfGTDGLLQAVGILGATVMPHSLYLHSALVQsRLVDRDVKEGVSEANMyrpieaaialsvsfsinE 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   239 VAIAM-TIAGFVNLAMMATAAAAFHFS-GHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQG 316
Cdd:TIGR01197 244 FVIALfTAALFVNTNILVVAGATLFNSnNNADAADLFSIGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 16130324   317 FIRFHIPLWVRRTVT----MLPSFIVILMG--LDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLM 377
Cdd:TIGR01197 324 FLNWRWSPWLRRLITraiaIIPCLLVAAFGgrEGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390
Nramp_1 NF037982
Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage ...
23-376 2.56e-90

Nramp family divalent metal transporter; Nramp (natural resistance-associated macrophage protein) family divalent metal transporters are widely conserved divalent metal transporters, which enables manganese import in bacteria and dietary iron uptake in mammals.


Pssm-ID: 468301  Cd Length: 404  Bit Score: 278.48  E-value: 2.56e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324   23 GPAFIAAIGYIDPGNFATNIQAGASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYpRPVVWFYWVQAE 102
Cdd:NF037982   1 GPGVIAAAAGVGSGEFILWPYIGSQFGYTLLWAALVGVLMQMFLNMEIERYTLATGETLFTGFRRLW-KPWGWFFWVQAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  103 IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL--LLFVAAAYIVELIFSQPNLA 180
Cdd:NF037982  80 LVNIWPGWATFSAAALTYLLGFGIPILWIAIATLVLIGLILTLAPVVYRALEKVIGVKvgLLVVFVAVAVVAVIAAPDWG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  181 QLGKGMVIPSLPTSE--AVFLA----AGVLGATIMPHVIYLHSS----------LTQHLHG-----GSRQQRYSATK--- 236
Cdd:NF037982 160 ALGAGVLFPQLPDGDlfAVLLGaiafAGAGGAQNMVQSNWLRDKgfgmgshvprLTSRVTGeteaePSTGYMFPTDEenl 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  237 -----------WDVAIAMTIAGFVNLAMMATAAA-AFHFSGH--TGVADLDEAYLTLQPLLSHAAATVFGLSLVAAGLSS 302
Cdd:NF037982 240 arwrgwwrvanFDQLIAFWLIGFINISMLSVLAAaTFFGSGSlaNDVAFLDVEGQTLAALVGPWFGTLFWLGGAASGLSS 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 16130324  303 TV-----VGTLAGQVVMQGFIRF-------HIPLWVRRTVTMLPSFIVILMGLDPTRILVMSQVLLSFGIaLALVPLLIF 370
Cdd:NF037982 320 ALgivdyVSRLAADVVKQGFLGGasrwsesRIYLYLVWGLTMFGIVILLAGGDQPLVLLVISAVLLGFGM-FAYSILLLL 398

                 ....*.
gi 16130324  371 TSDSKL 376
Cdd:NF037982 399 LNRRRL 404
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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